AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0074220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074220 MtrunA17_Chr1g0181891 94.183 361 18 1 1 358 1 361 0.0 676
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074220 AT5G12130.1 62.760 384 113 5 1 357 1 381 4.00e-152 434
Msa0074220 AT5G12130.2 69.255 322 80 2 53 357 22 341 1.18e-148 423

Find 101 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCTCTTCTCATCATTTA+AGG 0.091098 1_2:-48533851 Msa0074220:intron
TTGTTACAGGGATCAATTTC+TGG 0.173453 1_2:+48533365 None:intergenic
CGCCTGATAATAATACTTCT+TGG 0.220107 1_2:-48534045 Msa0074220:CDS
TGTAACACGGGATCCATTTA+TGG 0.222748 1_2:-48532368 Msa0074220:CDS
CTTAACTTATCTTGTAATTC+TGG 0.225297 1_2:-48536556 Msa0074220:five_prime_UTR
AACCAAAAGAGTGGTATTAT+TGG 0.232223 1_2:-48536528 Msa0074220:five_prime_UTR
CTGTTAGAGCTGTAGCCTTA+TGG 0.249487 1_2:-48535113 Msa0074220:CDS
CTTGATCGATTTCATTCTTC+AGG 0.260255 1_2:-48536173 Msa0074220:intron
GGGTTCCTCAGTTGGCTATT+TGG 0.261962 1_2:+48529665 None:intergenic
TTAGAAGAAAACACCATAAA+TGG 0.262800 1_2:+48532355 None:intergenic
GCTGTTGTACTGGGATTTAT+TGG 0.265015 1_2:-48530053 Msa0074220:CDS
GATGATAAAGGAATAATAAA+TGG 0.280495 1_2:+48529735 None:intergenic
ATTTGGGGTGTGGGTAGAAT+TGG 0.281978 1_2:+48529767 None:intergenic
TAGAGAACATTACTTGTTAC+AGG 0.291477 1_2:+48533352 None:intergenic
GTGGGTAGAATTGGATTTCT+TGG 0.296890 1_2:+48529776 None:intergenic
CATTATGATTCAATGGAGTT+TGG 0.307601 1_2:+48536422 None:intergenic
GCCGTCCATTGCTGTTGTAC+TGG 0.308097 1_2:-48530063 Msa0074220:CDS
TCAAATTTGAATTATGAGTT+TGG 0.317493 1_2:-48536467 Msa0074220:exon
AGCCAATAATACCACTCTTT+TGG 0.321171 1_2:+48536526 None:intergenic
TTCCAAGAAGTATTATTATC+AGG 0.326520 1_2:+48534043 None:intergenic
GAAGTGGAGTGTAGAGGTTT+TGG 0.332081 1_2:+48536372 None:intergenic
CCTTGTTTATAGATACATAT+TGG 0.332813 1_2:-48534334 Msa0074220:intron
AAGATGATCTTGGACTATTT+TGG 0.334282 1_2:-48530026 Msa0074220:intron
TGTTAGAGCTGTAGCCTTAT+GGG 0.336554 1_2:-48535112 Msa0074220:intron
GAGAAAATGAATTGAAACTT+TGG 0.340602 1_2:+48536488 None:intergenic
TAACAAATCAGGATGGGATA+TGG 0.357049 1_2:-48532752 Msa0074220:CDS
TGAATCATAATGCCCTTATC+AGG 0.358661 1_2:-48536411 Msa0074220:CDS
GTACTTTCCTATGGTATTGC+TGG 0.361260 1_2:-48534081 Msa0074220:CDS
GTCAGAATTGAAGTACTTAC+AGG 0.370831 1_2:-48531887 Msa0074220:intron
CTGTTGTACTGGGATTTATT+GGG 0.375873 1_2:-48530052 Msa0074220:CDS
CATTGGAGTGATATTAAGTC+TGG 0.387073 1_2:-48529868 Msa0074220:CDS
TGCATCACCTGATACAAAAC+TGG 0.390885 1_2:+48534249 None:intergenic
GCAATATTGCGGCCAATAGA+AGG 0.394887 1_2:+48533869 None:intergenic
TCTTGGAACAGCCACCATTC+AGG 0.402272 1_2:-48534028 Msa0074220:intron
TGAGGCAGTCAACCTTCTAT+TGG 0.402764 1_2:-48533881 Msa0074220:CDS
TATTGGGTGTAAGATGATCT+TGG 0.406333 1_2:-48530036 Msa0074220:CDS
AGATAGGACGGTGAAGGAAG+TGG 0.408111 1_2:+48536356 None:intergenic
CCGAGTATACAAGATGATAA+AGG 0.408126 1_2:+48529723 None:intergenic
CCGTCCATTGCTGTTGTACT+GGG 0.410679 1_2:-48530062 Msa0074220:CDS
AAGGCATCAGAATTCTTTGC+TGG 0.414094 1_2:-48534935 Msa0074220:CDS
CCTTTATCATCTTGTATACT+CGG 0.414413 1_2:-48529723 Msa0074220:three_prime_UTR
ATAATGCCCTTATCAGGATC+AGG 0.423375 1_2:-48536405 Msa0074220:CDS
GTTTGCGCCGCAGTAGCATT+TGG 0.429457 1_2:-48534989 Msa0074220:CDS
GTCTCAACGGAGGCATCTCT+TGG 0.430135 1_2:-48529912 Msa0074220:CDS
AATTGAAACTTTGGAGAGAA+GGG 0.436110 1_2:+48536497 None:intergenic
TGAAACCCTGATCCTGATAA+GGG 0.436637 1_2:+48536399 None:intergenic
AAACAAGTTCATAACAAATC+AGG 0.439299 1_2:-48532763 Msa0074220:CDS
TTGAAACCCTGATCCTGATA+AGG 0.444991 1_2:+48536398 None:intergenic
CAGAGATTTACCCACCCATA+AGG 0.448990 1_2:+48535098 None:intergenic
CAGAATCGTGTACTTTCCTA+TGG 0.449268 1_2:-48534090 Msa0074220:CDS
ATGGAGAATACCTGAGGAAA+AGG 0.451694 1_2:+48536330 None:intergenic
ATTGTTGCAGCATATTATGA+TGG 0.458126 1_2:-48532786 Msa0074220:intron
CCTGAGGAAAAGGAAGAGAT+AGG 0.458480 1_2:+48536340 None:intergenic
GCAAGATAGCTTACCCAGAA+TGG 0.477769 1_2:+48532324 None:intergenic
GTAGCCTCTAGTCTTTCCAT+TGG 0.487920 1_2:-48529885 Msa0074220:CDS
ATTTGTCAAATGTAGGTTTG+AGG 0.510439 1_2:-48531939 Msa0074220:intron
ATAAGGGCATTATGATTCAA+TGG 0.521803 1_2:+48536415 None:intergenic
GCCATAGCACAGTCTACAAA+GGG 0.523116 1_2:+48529645 None:intergenic
GTAGCATTTGGTGTTGGTGT+GGG 0.536752 1_2:-48534977 Msa0074220:CDS
GAGCTCAACTCATTCTGAGT+TGG 0.540882 1_2:+48529820 None:intergenic
ACTTTACATGATAATTTCTG+AGG 0.542248 1_2:-48531914 Msa0074220:CDS
TTGAAACTTTGGAGAGAAGG+GGG 0.543010 1_2:+48536499 None:intergenic
AGGAAGAGATAGGACGGTGA+AGG 0.543420 1_2:+48536350 None:intergenic
GAATTGAAACTTTGGAGAGA+AGG 0.547136 1_2:+48536496 None:intergenic
TGATGAGATATCTTCTACTG+AGG 0.548341 1_2:-48535151 Msa0074220:CDS
TTGGCTTCTGTTGTTCACAA+TGG 0.556243 1_2:-48536448 Msa0074220:CDS
GCCGCAGTAGCATTTGGTGT+TGG 0.559997 1_2:-48534983 Msa0074220:CDS
GTGAAGGAAGTGGAGTGTAG+AGG 0.568026 1_2:+48536366 None:intergenic
AGTAGCATTTGGTGTTGGTG+TGG 0.569083 1_2:-48534978 Msa0074220:CDS
TCTACAAAGGGTTCCTCAGT+TGG 0.573428 1_2:+48529657 None:intergenic
GAGATGCCTCCGTTGAGACA+TGG 0.574395 1_2:+48529916 None:intergenic
TAATGCCCTTATCAGGATCA+GGG 0.576136 1_2:-48536404 Msa0074220:CDS
AGGCATCAGAATTCTTTGCT+GGG 0.578831 1_2:-48534934 Msa0074220:intron
AATGTCACTGAGTTCAATAA+CGG 0.580060 1_2:+48532508 None:intergenic
ATTGAAACTTTGGAGAGAAG+GGG 0.583653 1_2:+48536498 None:intergenic
ACCCTTTGTAGACTGTGCTA+TGG 0.588312 1_2:-48529646 Msa0074220:three_prime_UTR
CTTTACATGATAATTTCTGA+GGG 0.588312 1_2:-48531913 Msa0074220:CDS
AGTTCATAACAAATCAGGAT+GGG 0.600192 1_2:-48532758 Msa0074220:CDS
TACAGGATTCCATGTCTCAA+CGG 0.603150 1_2:-48529925 Msa0074220:intron
ACCAACACCAAATGCTACTG+CGG 0.603707 1_2:+48534982 None:intergenic
AAATCCCAGTACAACAGCAA+TGG 0.605163 1_2:+48530058 None:intergenic
AGAGAACATTACTTGTTACA+GGG 0.606173 1_2:+48533353 None:intergenic
CCCAGTACAACAGCAATGGA+CGG 0.606201 1_2:+48530062 None:intergenic
AAATCAGGATGGGATATGGA+TGG 0.609233 1_2:-48532748 Msa0074220:intron
AGCCATAGCACAGTCTACAA+AGG 0.609625 1_2:+48529644 None:intergenic
ACGGCTACGGTAAGAAGCAA+AGG 0.614565 1_2:+48532527 None:intergenic
CACTCCAATGGAAAGACTAG+AGG 0.616706 1_2:+48529881 None:intergenic
CAGACTTAATATCACTCCAA+TGG 0.619498 1_2:+48529869 None:intergenic
ATTTGTTTGATACATGCAAG+TGG 0.623492 1_2:+48536203 None:intergenic
TGATACATGCAAGTGGAAGA+CGG 0.623537 1_2:+48536210 None:intergenic
ACTGAGTTCAATAACGGCTA+CGG 0.624614 1_2:+48532514 None:intergenic
AAGTTCATAACAAATCAGGA+TGG 0.640212 1_2:-48532759 Msa0074220:CDS
AGGAAAAGGAAGAGATAGGA+CGG 0.645585 1_2:+48536344 None:intergenic
TTGAAAACACACCTGAATGG+TGG 0.653741 1_2:+48534017 None:intergenic
TACGGTAAGAAGCAAAGGTG+TGG 0.654323 1_2:+48532532 None:intergenic
TGATGAGAAGAGCAATATTG+CGG 0.659476 1_2:+48533858 None:intergenic
AACTGCACCAGCAATACCAT+AGG 0.661157 1_2:+48534074 None:intergenic
CTGGCGCAAAACCAAAAGAG+TGG 0.669445 1_2:-48536537 Msa0074220:five_prime_UTR
ATTGGAGCAAAGTCTCTCAG+TGG 0.684312 1_2:-48534316 Msa0074220:CDS
ATTAGCCAAATAGCCAACTG+AGG 0.692887 1_2:-48529670 Msa0074220:three_prime_UTR
AGGATTCCATGTCTCAACGG+AGG 0.720260 1_2:-48529922 Msa0074220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAAAAAAAAATAGATTTT+GGG + chr1_2:48530327-48530346 None:intergenic 10.0%
!!! TGAAAAAAAAAAATAGATTT+TGG + chr1_2:48530328-48530347 None:intergenic 10.0%
!!! ATTTTTTTTTTTCAAAAACA+AGG - chr1_2:48530334-48530353 Msa0074220:intron 10.0%
!! CAAAATTTGATATAATTATA+AGG - chr1_2:48530882-48530901 Msa0074220:intron 10.0%
!!! ATTTTTAAAATTTTCTAGAA+TGG - chr1_2:48531241-48531260 Msa0074220:intron 10.0%
!!! TTTTTAAAATTTTCTAGAAT+GGG - chr1_2:48531242-48531261 Msa0074220:intron 10.0%
!! AAAGTTTAATTAAATTATGA+AGG - chr1_2:48532495-48532514 Msa0074220:intron 10.0%
!! AAAATTAAATTCAAATATAC+AGG + chr1_2:48533870-48533889 None:intergenic 10.0%
!! ATTCATAATAAAATACAAAA+TGG + chr1_2:48535769-48535788 None:intergenic 10.0%
!!! TTATTATGAATTTTATCATA+AGG - chr1_2:48535778-48535797 Msa0074220:intron 10.0%
!!! TTTAAAAGGTGATTTTTTTT+TGG - chr1_2:48530398-48530417 Msa0074220:intron 15.0%
!! ATTTATTCAAAATCTATTCT+TGG - chr1_2:48530486-48530505 Msa0074220:intron 15.0%
!!! TTTTTTTTATTTTTGATCCA+AGG - chr1_2:48530545-48530564 Msa0074220:intron 15.0%
!! TTATGATAAGTAATAAAAAG+TGG - chr1_2:48530846-48530865 Msa0074220:intron 15.0%
!!! CTTTAAGTTTTTTAATCATT+TGG - chr1_2:48531525-48531544 Msa0074220:intron 15.0%
!! ATGTATTAACAAGTTATTAT+TGG - chr1_2:48531964-48531983 Msa0074220:intron 15.0%
!!! TTTTTTTTTTGTTGTATTTG+TGG - chr1_2:48532180-48532199 Msa0074220:intron 15.0%
!!! TTTGTTATAAAGTTGTTTAT+TGG + chr1_2:48533986-48534005 None:intergenic 15.0%
!! TTCTTTAAATGTATTACATT+TGG - chr1_2:48534346-48534365 Msa0074220:intron 15.0%
!! TCTTTAAATGTATTACATTT+GGG - chr1_2:48534347-48534366 Msa0074220:intron 15.0%
!!! AGGTTTTTAATTTCAAAATA+GGG + chr1_2:48535052-48535071 None:intergenic 15.0%
!!! TAGGTTTTTAATTTCAAAAT+AGG + chr1_2:48535053-48535072 None:intergenic 15.0%
!! ATAAAATGAAATTATTAGGA+GGG + chr1_2:48535804-48535823 None:intergenic 15.0%
!! AATAAAATGAAATTATTAGG+AGG + chr1_2:48535805-48535824 None:intergenic 15.0%
!! TTTGTAATATATCATATCAA+TGG + chr1_2:48535994-48536013 None:intergenic 15.0%
!! AAATATGTATATTAATGGTA+AGG + chr1_2:48536050-48536069 None:intergenic 15.0%
!! GAACAAAATATGTATATTAA+TGG + chr1_2:48536055-48536074 None:intergenic 15.0%
!!! TAAATGGATATTTTTCATTT+GGG + chr1_2:48536396-48536415 None:intergenic 15.0%
!!! ATAAATGGATATTTTTCATT+TGG + chr1_2:48536397-48536416 None:intergenic 15.0%
!!! GAGATATTTATTTTATATGT+TGG - chr1_2:48536447-48536466 Msa0074220:CDS 15.0%
!! TCAAATTTGAATTATGAGTT+TGG - chr1_2:48529677-48529696 Msa0074220:three_prime_UTR 20.0%
!! AGTAATTAAGAAGATGAATT+TGG + chr1_2:48529859-48529878 None:intergenic 20.0%
!!! AATAACTTTTGTCATTTTGA+AGG - chr1_2:48530215-48530234 Msa0074220:intron 20.0%
!!! CTCTAAAATGAAAAGTTATT+AGG - chr1_2:48530292-48530311 Msa0074220:intron 20.0%
!!! TTTTTTTTTCAAAAACAAGG+AGG - chr1_2:48530337-48530356 Msa0074220:intron 20.0%
!!! TTGTAATTTGTAGGAATAAA+AGG + chr1_2:48530575-48530594 None:intergenic 20.0%
!! AATAAGCTAAAAACAACTTA+TGG - chr1_2:48530773-48530792 Msa0074220:intron 20.0%
!! ATTAATGTAAATGAAATCAG+AGG + chr1_2:48531115-48531134 None:intergenic 20.0%
!! CATTTACATTAATCTAGTTA+TGG - chr1_2:48531122-48531141 Msa0074220:intron 20.0%
!! AAAGAAACTTCACAAAATAT+TGG + chr1_2:48531509-48531528 None:intergenic 20.0%
!! TAAATATTGGATAATGAGAA+TGG + chr1_2:48532322-48532341 None:intergenic 20.0%
!!! AGAATGAAGTACTTAAATAT+TGG + chr1_2:48532335-48532354 None:intergenic 20.0%
!!! AACTTAAAAGTTTAAGGTTT+AGG + chr1_2:48532575-48532594 None:intergenic 20.0%
!! TACTTCAACTTAAAAGTTTA+AGG + chr1_2:48532581-48532600 None:intergenic 20.0%
!!! ATTTTTTCAGAGTAAGATTT+TGG + chr1_2:48533340-48533359 None:intergenic 20.0%
!! AAAATTTCACATTAAATGGA+AGG + chr1_2:48533693-48533712 None:intergenic 20.0%
!!! TTAATTTTCAACCACTATTT+TGG + chr1_2:48534458-48534477 None:intergenic 20.0%
!!! TAAAGTTTTTATTTCACAGT+CGG + chr1_2:48534542-48534561 None:intergenic 20.0%
!! TAAATTGCTTATCTTGAAAT+TGG - chr1_2:48534568-48534587 Msa0074220:intron 20.0%
!! AAATTGCTTATCTTGAAATT+GGG - chr1_2:48534569-48534588 Msa0074220:intron 20.0%
!! TGATAATTTATTCTCAAAAG+AGG - chr1_2:48534749-48534768 Msa0074220:intron 20.0%
!! TAGAGTAATATAACTCAAAA+TGG - chr1_2:48534977-48534996 Msa0074220:CDS 20.0%
!! AGAGTAATATAACTCAAAAT+GGG - chr1_2:48534978-48534997 Msa0074220:CDS 20.0%
!!! GGTTTTTAATTTCAAAATAG+GGG + chr1_2:48535051-48535070 None:intergenic 20.0%
!!! TTTTCAGAAACCAATTTTTT+TGG - chr1_2:48535413-48535432 Msa0074220:intron 20.0%
!!! TTTCAGAAACCAATTTTTTT+GGG - chr1_2:48535414-48535433 Msa0074220:intron 20.0%
!! TATCTTGAATTATGACTATA+TGG - chr1_2:48535700-48535719 Msa0074220:intron 20.0%
!! ATAAGTCATGGTATATATAA+AGG + chr1_2:48535870-48535889 None:intergenic 20.0%
!! CAGAGGATTATATTAAAATT+TGG + chr1_2:48536170-48536189 None:intergenic 20.0%
!!! AAATGGATATTTTTCATTTG+GGG + chr1_2:48536395-48536414 None:intergenic 20.0%
!! GATGATAAAGGAATAATAAA+TGG + chr1_2:48536412-48536431 None:intergenic 20.0%
!!! GTCAATCAAAACATTTTTTT+TGG - chr1_2:48536562-48536581 Msa0074220:five_prime_UTR 20.0%
! CTTAACTTATCTTGTAATTC+TGG - chr1_2:48529588-48529607 Msa0074220:three_prime_UTR 25.0%
! GAGAAAATGAATTGAAACTT+TGG + chr1_2:48529659-48529678 None:intergenic 25.0%
! AATTAAGAAGATGAATTTGG+AGG + chr1_2:48529856-48529875 None:intergenic 25.0%
! ACATGGAAAAAAAGTGAATA+GGG + chr1_2:48529889-48529908 None:intergenic 25.0%
! AAATTAGAGTGCGTTTATTT+AGG - chr1_2:48530171-48530190 Msa0074220:intron 25.0%
!!! TGCGTTTATTTAGGATTTTT+GGG - chr1_2:48530180-48530199 Msa0074220:intron 25.0%
!!! TTTATTTAGGATTTTTGGGA+AGG - chr1_2:48530184-48530203 Msa0074220:intron 25.0%
! AAAAATTTACAGGTTGTGTT+TGG + chr1_2:48530522-48530541 None:intergenic 25.0%
!! TAATTTGTAGGAATAAAAGG+TGG + chr1_2:48530572-48530591 None:intergenic 25.0%
!!! CATGTAGTTTTGTAATTTGT+AGG + chr1_2:48530584-48530603 None:intergenic 25.0%
!! TTTTACAGAAGGTTATGAAA+AGG - chr1_2:48531190-48531209 Msa0074220:intron 25.0%
! AAACTTCACAAAATATTGGT+GGG + chr1_2:48531505-48531524 None:intergenic 25.0%
! CTCTGTGATATACTAATTTA+AGG + chr1_2:48531629-48531648 None:intergenic 25.0%
! GTTTGTAGTTATAGCATATT+TGG - chr1_2:48531667-48531686 Msa0074220:intron 25.0%
! CCAATATGTATCTATAAACA+AGG + chr1_2:48531813-48531832 None:intergenic 25.0%
!! CCTTGTTTATAGATACATAT+TGG - chr1_2:48531810-48531829 Msa0074220:intron 25.0%
! CATGAATGCAAATAATTGAT+CGG - chr1_2:48532005-48532024 Msa0074220:intron 25.0%
!!! TTCCAAGAAGTATTATTATC+AGG + chr1_2:48532104-48532123 None:intergenic 25.0%
!! GATTAATACTGTGATTTTAG+AGG - chr1_2:48532238-48532257 Msa0074220:intron 25.0%
! TCCTTAAAGCTTAAGATATT+AGG - chr1_2:48532403-48532422 Msa0074220:intron 25.0%
! TCCTAATATCTTAAGCTTTA+AGG + chr1_2:48532407-48532426 None:intergenic 25.0%
!! ACAAAAAATTTGAAGTTCCT+AGG + chr1_2:48532638-48532657 None:intergenic 25.0%
!!! GAACTTCAAATTTTTTGTTG+TGG - chr1_2:48532640-48532659 Msa0074220:intron 25.0%
!!! TTTCTTTCTCTTTTTGTTGT+TGG - chr1_2:48532825-48532844 Msa0074220:intron 25.0%
! ATTCAGTTTCAATTGATCAA+CGG + chr1_2:48532943-48532962 None:intergenic 25.0%
! TAGAATAACTAGATATAAGC+TGG - chr1_2:48533098-48533117 Msa0074220:intron 25.0%
!! TGGAGTATTCTAATTACATT+GGG - chr1_2:48533118-48533137 Msa0074220:intron 25.0%
!! AATGCTGGATTAGAATAAAT+AGG - chr1_2:48533163-48533182 Msa0074220:intron 25.0%
! TTGTATACATGTATACATGT+AGG + chr1_2:48533203-48533222 None:intergenic 25.0%
! AAACAAGTTCATAACAAATC+AGG - chr1_2:48533381-48533400 Msa0074220:CDS 25.0%
! CCACAAAATTTCACATTAAA+TGG + chr1_2:48533697-48533716 None:intergenic 25.0%
!! CCATTTAATGTGAAATTTTG+TGG - chr1_2:48533694-48533713 Msa0074220:intron 25.0%
! TTAGAAGAAAACACCATAAA+TGG + chr1_2:48533792-48533811 None:intergenic 25.0%
! GCTAGTAAAACTTCATTTAT+AGG - chr1_2:48533934-48533953 Msa0074220:intron 25.0%
!! AACTGTTATTTGTCAAATGT+AGG - chr1_2:48534198-48534217 Msa0074220:intron 25.0%
! ACTTTACATGATAATTTCTG+AGG - chr1_2:48534230-48534249 Msa0074220:intron 25.0%
! CTTTACATGATAATTTCTGA+GGG - chr1_2:48534231-48534250 Msa0074220:intron 25.0%
!! AAAATTAACTCACGTTGTTT+TGG - chr1_2:48534470-48534489 Msa0074220:intron 25.0%
! AATTGCTTATCTTGAAATTG+GGG - chr1_2:48534570-48534589 Msa0074220:intron 25.0%
! TTATATTCCTTTGTCTAAGT+AGG - chr1_2:48534702-48534721 Msa0074220:intron 25.0%
! AAATTGAAGTCAAATGCAAT+GGG + chr1_2:48534730-48534749 None:intergenic 25.0%
! ATCATCATTTCAGCAAAAAA+AGG - chr1_2:48534779-48534798 Msa0074220:intron 25.0%
! AATTACCTGAATCTTAATCA+AGG + chr1_2:48534836-48534855 None:intergenic 25.0%
! AAGATTCAGGTAATTTCTAA+AGG - chr1_2:48534841-48534860 Msa0074220:intron 25.0%
! CATTGCAAGATAATAGATAT+TGG + chr1_2:48534877-48534896 None:intergenic 25.0%
!! ATATTACTCTAGCTTAGAAT+TGG + chr1_2:48534968-48534987 None:intergenic 25.0%
!!! AAAATAGGGGATTTTGATTT+TGG + chr1_2:48535038-48535057 None:intergenic 25.0%
! GATAAGAAACACATACATTT+AGG + chr1_2:48535072-48535091 None:intergenic 25.0%
! ATGTATATTAATGGTAAGGA+TGG + chr1_2:48536046-48536065 None:intergenic 25.0%
AACCAAAAGAGTGGTATTAT+TGG - chr1_2:48529616-48529635 Msa0074220:three_prime_UTR 30.0%
! AATTGAAACTTTGGAGAGAA+GGG + chr1_2:48529650-48529669 None:intergenic 30.0%
CATTATGATTCAATGGAGTT+TGG + chr1_2:48529725-48529744 None:intergenic 30.0%
!! ATAAGGGCATTATGATTCAA+TGG + chr1_2:48529732-48529751 None:intergenic 30.0%
CATGGAAAAAAAGTGAATAG+GGG + chr1_2:48529888-48529907 None:intergenic 30.0%
GACATGGAAAAAAAGTGAAT+AGG + chr1_2:48529890-48529909 None:intergenic 30.0%
ATTTGTTTGATACATGCAAG+TGG + chr1_2:48529944-48529963 None:intergenic 30.0%
TCTAACTTGAAGGTAGAAAT+TGG - chr1_2:48530115-48530134 Msa0074220:intron 30.0%
!! GTGCGTTTATTTAGGATTTT+TGG - chr1_2:48530179-48530198 Msa0074220:intron 30.0%
!!! TTTTGAAGGTGTTTTTGTCT+AGG - chr1_2:48530229-48530248 Msa0074220:intron 30.0%
AAGCATTTATGAGACTGTTT+GGG + chr1_2:48530828-48530847 None:intergenic 30.0%
TAAGCATTTATGAGACTGTT+TGG + chr1_2:48530829-48530848 None:intergenic 30.0%
ATCTAGTTATGGTTTCTTAC+AGG - chr1_2:48531133-48531152 Msa0074220:intron 30.0%
CTATTCTAGTAGTGTAAAGT+TGG + chr1_2:48531394-48531413 None:intergenic 30.0%
GAAACTTCACAAAATATTGG+TGG + chr1_2:48531506-48531525 None:intergenic 30.0%
GCTTATCAAAGCAGAAATTA+AGG + chr1_2:48531564-48531583 None:intergenic 30.0%
! TAATTTAAGGCCATATTCAC+AGG + chr1_2:48531616-48531635 None:intergenic 30.0%
ATGCTATAACTACAAACTCT+AGG + chr1_2:48531664-48531683 None:intergenic 30.0%
!!! TTGGATATTTTGAAGTACTC+TGG - chr1_2:48531728-48531747 Msa0074220:intron 30.0%
TTTGCAAACTATGTACTCAA+TGG - chr1_2:48531771-48531790 Msa0074220:intron 30.0%
TTGCAAACTATGTACTCAAT+GGG - chr1_2:48531772-48531791 Msa0074220:intron 30.0%
AAAGTTTACTCTTGACAAGA+AGG + chr1_2:48531928-48531947 None:intergenic 30.0%
!! ATTTTGAAAACACACCTGAA+TGG + chr1_2:48532133-48532152 None:intergenic 30.0%
! ATTCAGGTGTGTTTTCAAAA+TGG - chr1_2:48532132-48532151 Msa0074220:intron 30.0%
ATCACAGTATTAATCAAGAC+AGG + chr1_2:48532233-48532252 None:intergenic 30.0%
ATTGCTCTTCTCATCATTTA+AGG - chr1_2:48532293-48532312 Msa0074220:intron 30.0%
TTAAGTACTTCATTCTTGCT+TGG - chr1_2:48532339-48532358 Msa0074220:CDS 30.0%
AAGCTTAAGATATTAGGACA+TGG - chr1_2:48532409-48532428 Msa0074220:intron 30.0%
!! CTTTTGGCTATATGATATCA+AGG - chr1_2:48532540-48532559 Msa0074220:intron 30.0%
! AGTTTAAGGTTTAGGATGAT+TGG + chr1_2:48532567-48532586 None:intergenic 30.0%
TTGTGGTATTCACAATTCTA+TGG - chr1_2:48532657-48532676 Msa0074220:intron 30.0%
! AGACTTATCTGACAACTTTT+TGG - chr1_2:48532746-48532765 Msa0074220:intron 30.0%
! AGAGAACATTACTTGTTACA+GGG + chr1_2:48532794-48532813 None:intergenic 30.0%
! TAGAGAACATTACTTGTTAC+AGG + chr1_2:48532795-48532814 None:intergenic 30.0%
! TTTTCTGTTGATCACTTGAA+TGG - chr1_2:48532851-48532870 Msa0074220:intron 30.0%
AACCAATGAAAGAAGAATTC+TGG - chr1_2:48533073-48533092 Msa0074220:intron 30.0%
ATCCAGAATTCTTCTTTCAT+TGG + chr1_2:48533078-48533097 None:intergenic 30.0%
! CTGGAGTATTCTAATTACAT+TGG - chr1_2:48533117-48533136 Msa0074220:intron 30.0%
GTATTCTAATTACATTGGGT+TGG - chr1_2:48533122-48533141 Msa0074220:intron 30.0%
ATACTCAAATAAAACGACCA+CGG + chr1_2:48533287-48533306 None:intergenic 30.0%
ATTGTTGCAGCATATTATGA+TGG - chr1_2:48533358-48533377 Msa0074220:intron 30.0%
AAGTTCATAACAAATCAGGA+TGG - chr1_2:48533385-48533404 Msa0074220:CDS 30.0%
AGTTCATAACAAATCAGGAT+GGG - chr1_2:48533386-48533405 Msa0074220:CDS 30.0%
! TAACAGGGATCAAACATTTT+GGG - chr1_2:48533585-48533604 Msa0074220:intron 30.0%
AATGTCACTGAGTTCAATAA+CGG + chr1_2:48533639-48533658 None:intergenic 30.0%
TTGTGGTATAAATCTTGACA+CGG - chr1_2:48533711-48533730 Msa0074220:intron 30.0%
! ACACGGTTTTCTTTTCTAAT+AGG - chr1_2:48533728-48533747 Msa0074220:intron 30.0%
! TTCTAATCTTTTTGCCATTC+TGG - chr1_2:48533806-48533825 Msa0074220:intron 30.0%
! TCTAATCTTTTTGCCATTCT+GGG - chr1_2:48533807-48533826 Msa0074220:intron 30.0%
ATACAGGCATTACATCATAA+GGG + chr1_2:48533854-48533873 None:intergenic 30.0%
TATACAGGCATTACATCATA+AGG + chr1_2:48533855-48533874 None:intergenic 30.0%
TTTCCAGGTATCAAACTTTA+AGG + chr1_2:48533910-48533929 None:intergenic 30.0%
TATTGGCACATGTTTATCAA+TGG + chr1_2:48533969-48533988 None:intergenic 30.0%
TCCATTAAGTCATTAACATG+TGG - chr1_2:48534053-48534072 Msa0074220:CDS 30.0%
TCCACATGTTAATGACTTAA+TGG + chr1_2:48534057-48534076 None:intergenic 30.0%
!! AAAAAGCATCGACTATTGTT+AGG + chr1_2:48534138-48534157 None:intergenic 30.0%
ATTTGTCAAATGTAGGTTTG+AGG - chr1_2:48534205-48534224 Msa0074220:intron 30.0%
AGAAAATCATGCATCAATCA+TGG + chr1_2:48534310-48534329 None:intergenic 30.0%
TCTACGCTTATGCAATAATT+CGG + chr1_2:48534503-48534522 None:intergenic 30.0%
CAAATTGAAGTCAAATGCAA+TGG + chr1_2:48534731-48534750 None:intergenic 30.0%
TCATTTCAGCAAAAAAAGGT+AGG - chr1_2:48534783-48534802 Msa0074220:intron 30.0%
CATTTCAGCAAAAAAAGGTA+GGG - chr1_2:48534784-48534803 Msa0074220:intron 30.0%
! CAGGTAATTTCTAAAGGAAA+CGG - chr1_2:48534847-48534866 Msa0074220:intron 30.0%
AGAATTGGATTGTCTTATCA+AGG + chr1_2:48534953-48534972 None:intergenic 30.0%
! GAGAGAGAACAGATTTTTAA+TGG + chr1_2:48535180-48535199 None:intergenic 30.0%
AGCAAACAGTTTCATTCATT+TGG + chr1_2:48535242-48535261 None:intergenic 30.0%
TGTTTGCTTTAATTCTGAGT+TGG - chr1_2:48535254-48535273 Msa0074220:intron 30.0%
TCAAATGGACCCAAAAAAAT+TGG + chr1_2:48535426-48535445 None:intergenic 30.0%
ATTTCTTTCGAGAAATTGAG+AGG + chr1_2:48535460-48535479 None:intergenic 30.0%
TCTCAATTTCTCGAAAGAAA+TGG - chr1_2:48535459-48535478 Msa0074220:intron 30.0%
AATTTCTCGAAAGAAATGGA+GGG - chr1_2:48535463-48535482 Msa0074220:intron 30.0%
! TCATTTGTTGAAAAACTGGA+GGG + chr1_2:48535578-48535597 None:intergenic 30.0%
! TTCATTTGTTGAAAAACTGG+AGG + chr1_2:48535579-48535598 None:intergenic 30.0%
! CTCTTCATTTGTTGAAAAAC+TGG + chr1_2:48535582-48535601 None:intergenic 30.0%
!! CAGTTTTTCAACAAATGAAG+AGG - chr1_2:48535580-48535599 Msa0074220:intron 30.0%
AATTCGCAATTGATGTAAGT+CGG + chr1_2:48535621-48535640 None:intergenic 30.0%
TATATGGATAAATCTGTGCT+TGG - chr1_2:48535716-48535735 Msa0074220:intron 30.0%
! AAGATGATCTTGGACTATTT+TGG - chr1_2:48536118-48536137 Msa0074220:intron 30.0%
!! ATATTTTTCATTTGGGGTGT+GGG + chr1_2:48536389-48536408 None:intergenic 30.0%
CCTTTATCATCTTGTATACT+CGG - chr1_2:48536421-48536440 Msa0074220:CDS 30.0%
! AGCCAATAATACCACTCTTT+TGG + chr1_2:48529621-48529640 None:intergenic 35.0%
! ATTGAAACTTTGGAGAGAAG+GGG + chr1_2:48529649-48529668 None:intergenic 35.0%
! GAATTGAAACTTTGGAGAGA+AGG + chr1_2:48529651-48529670 None:intergenic 35.0%
TGAATCATAATGCCCTTATC+AGG - chr1_2:48529733-48529752 Msa0074220:three_prime_UTR 35.0%
! CTTGATCGATTTCATTCTTC+AGG - chr1_2:48529971-48529990 Msa0074220:intron 35.0%
TGCTTTGATTACACTTCTTG+AGG - chr1_2:48530055-48530074 Msa0074220:CDS 35.0%
CAAGTTAGAGTCAATTCTGA+AGG + chr1_2:48530104-48530123 None:intergenic 35.0%
! CAGAATTGACTCTAACTTGA+AGG - chr1_2:48530105-48530124 Msa0074220:intron 35.0%
ACTCTTTATCCAAACAAGAG+AGG + chr1_2:48530615-48530634 None:intergenic 35.0%
CTTATTTCCATAAGCTCTTC+AGG + chr1_2:48530759-48530778 None:intergenic 35.0%
ATCAAGGGCTAAACTAATCA+CGG + chr1_2:48530926-48530945 None:intergenic 35.0%
! TTAGCCCTTGATTTTATGAG+TGG - chr1_2:48530934-48530953 Msa0074220:intron 35.0%
ACCACCACTCATAAAATCAA+GGG + chr1_2:48530941-48530960 None:intergenic 35.0%
TGATGAGATATCTTCTACTG+AGG - chr1_2:48530993-48531012 Msa0074220:intron 35.0%
CAATCTGAGAACTTACTATG+AGG + chr1_2:48531271-48531290 None:intergenic 35.0%
!!! TTTTTTTCCTCCTACTAGAG+AGG + chr1_2:48531327-48531346 None:intergenic 35.0%
AAGCAGGATAAAAAGAAACG+AGG + chr1_2:48531591-48531610 None:intergenic 35.0%
ATTCATGACTAGTGACTTAG+CGG - chr1_2:48531704-48531723 Msa0074220:intron 35.0%
CGCCTGATAATAATACTTCT+TGG - chr1_2:48532099-48532118 Msa0074220:intron 35.0%
CAGTATTAATCAAGACAGGA+TGG + chr1_2:48532229-48532248 None:intergenic 35.0%
!! ACTGTGATTTTAGAGGTTTG+AGG - chr1_2:48532245-48532264 Msa0074220:intron 35.0%
TGATGAGAAGAGCAATATTG+CGG + chr1_2:48532289-48532308 None:intergenic 35.0%
CATTGTTTCCTTGACAAGTA+GGG + chr1_2:48532382-48532401 None:intergenic 35.0%
TCATTGTTTCCTTGACAAGT+AGG + chr1_2:48532383-48532402 None:intergenic 35.0%
! TATCCTCTTTCATGCTACTT+AGG - chr1_2:48532450-48532469 Msa0074220:intron 35.0%
! ATCCTCTTTCATGCTACTTA+GGG - chr1_2:48532451-48532470 Msa0074220:intron 35.0%
TATCTCTTCAACAGTATCCT+AGG - chr1_2:48532618-48532637 Msa0074220:intron 35.0%
GTATTCACAATTCTATGGAC+TGG - chr1_2:48532662-48532681 Msa0074220:intron 35.0%
TTGTTACAGGGATCAATTTC+TGG + chr1_2:48532782-48532801 None:intergenic 35.0%
ACAATATCTTCTCAACTCAG+TGG - chr1_2:48533031-48533050 Msa0074220:intron 35.0%
!! TGTTGGCTTATCATTCTACT+AGG - chr1_2:48533255-48533274 Msa0074220:intron 35.0%
TAACAAATCAGGATGGGATA+TGG - chr1_2:48533392-48533411 Msa0074220:CDS 35.0%
! CTAACAGGGATCAAACATTT+TGG - chr1_2:48533584-48533603 Msa0074220:intron 35.0%
CACATTAAATGGAAGGATCA+GGG + chr1_2:48533686-48533705 None:intergenic 35.0%
TCACATTAAATGGAAGGATC+AGG + chr1_2:48533687-48533706 None:intergenic 35.0%
! CGGTTTTCTTTTCTAATAGG+TGG - chr1_2:48533731-48533750 Msa0074220:intron 35.0%
TACAGGCATTACATCATAAG+GGG + chr1_2:48533853-48533872 None:intergenic 35.0%
! GTCAGAATTGAAGTACTTAC+AGG - chr1_2:48534257-48534276 Msa0074220:CDS 35.0%
TTCTAGTAACACTTCATCCT+TGG - chr1_2:48534391-48534410 Msa0074220:intron 35.0%
TCGCAAATTTCTATACAAGC+AGG + chr1_2:48534429-48534448 None:intergenic 35.0%
CTTATCTTGAAATTGGGGTT+AGG - chr1_2:48534575-48534594 Msa0074220:intron 35.0%
!! GGAAAGTACTCTTCTTGATA+GGG - chr1_2:48534805-48534824 Msa0074220:intron 35.0%
TACTGCCTTGATTAAGATTC+AGG - chr1_2:48534828-48534847 Msa0074220:intron 35.0%
CATTAAAATGTACTAGAGCG+TGG - chr1_2:48535108-48535127 Msa0074220:intron 35.0%
! TGAAACACTTTTCCATGACT+GGG - chr1_2:48535149-48535168 Msa0074220:CDS 35.0%
AAAAATCTGTTCTCTCTCCA+AGG - chr1_2:48535182-48535201 Msa0074220:CDS 35.0%
CAATTTCTCGAAAGAAATGG+AGG - chr1_2:48535462-48535481 Msa0074220:intron 35.0%
GATATTTGCTCAATAACGCA+TGG - chr1_2:48535655-48535674 Msa0074220:intron 35.0%
GACGTTACTACTATAAGTCA+TGG + chr1_2:48535882-48535901 None:intergenic 35.0%
CTGTTGTACTGGGATTTATT+GGG - chr1_2:48536092-48536111 Msa0074220:intron 35.0%
TATTGGGTGTAAGATGATCT+TGG - chr1_2:48536108-48536127 Msa0074220:intron 35.0%
! AAATTTGGTAACTGAACGAG+TGG + chr1_2:48536155-48536174 None:intergenic 35.0%
TCACATATTCTCGTTTGTAC+AGG - chr1_2:48536202-48536221 Msa0074220:CDS 35.0%
CAGACTTAATATCACTCCAA+TGG + chr1_2:48536278-48536297 None:intergenic 35.0%
CATTGGAGTGATATTAAGTC+TGG - chr1_2:48536276-48536295 Msa0074220:intron 35.0%
!! GATATTTTTCATTTGGGGTG+TGG + chr1_2:48536390-48536409 None:intergenic 35.0%
CCGAGTATACAAGATGATAA+AGG + chr1_2:48536424-48536443 None:intergenic 35.0%
! TTGAAACTTTGGAGAGAAGG+GGG + chr1_2:48529648-48529667 None:intergenic 40.0%
TTGGCTTCTGTTGTTCACAA+TGG - chr1_2:48529696-48529715 Msa0074220:three_prime_UTR 40.0%
ATAATGCCCTTATCAGGATC+AGG - chr1_2:48529739-48529758 Msa0074220:three_prime_UTR 40.0%
TAATGCCCTTATCAGGATCA+GGG - chr1_2:48529740-48529759 Msa0074220:three_prime_UTR 40.0%
TGAAACCCTGATCCTGATAA+GGG + chr1_2:48529748-48529767 None:intergenic 40.0%
TTGAAACCCTGATCCTGATA+AGG + chr1_2:48529749-48529768 None:intergenic 40.0%
AGGAAAAGGAAGAGATAGGA+CGG + chr1_2:48529803-48529822 None:intergenic 40.0%
ATGGAGAATACCTGAGGAAA+AGG + chr1_2:48529817-48529836 None:intergenic 40.0%
TTCCATGTCTGTGATAACAG+TGG - chr1_2:48529901-48529920 Msa0074220:CDS 40.0%
ATCCACTGTTATCACAGACA+TGG + chr1_2:48529906-48529925 None:intergenic 40.0%
TGATACATGCAAGTGGAAGA+CGG + chr1_2:48529937-48529956 None:intergenic 40.0%
TAGGAATAAAAGGTGGACCT+TGG + chr1_2:48530565-48530584 None:intergenic 40.0%
! GCTTTTAGTCCTCTCTTGTT+TGG - chr1_2:48530603-48530622 Msa0074220:intron 40.0%
TCAAGGGCTAAACTAATCAC+GGG + chr1_2:48530925-48530944 None:intergenic 40.0%
CACCACCACTCATAAAATCA+AGG + chr1_2:48530942-48530961 None:intergenic 40.0%
!! TGTTAGAGCTGTAGCCTTAT+GGG - chr1_2:48531032-48531051 Msa0074220:intron 40.0%
! AAGGCATCAGAATTCTTTGC+TGG - chr1_2:48531209-48531228 Msa0074220:intron 40.0%
AGGCATCAGAATTCTTTGCT+GGG - chr1_2:48531210-48531229 Msa0074220:intron 40.0%
TGTAGTAGATCCTCTCTAGT+AGG - chr1_2:48531314-48531333 Msa0074220:intron 40.0%
ATGTGGAATGTGATTGGTGA+TGG + chr1_2:48531482-48531501 None:intergenic 40.0%
CACAAAATATTGGTGGGATG+TGG + chr1_2:48531499-48531518 None:intergenic 40.0%
!! CAAAGTGCCAGTTTTGTATC+AGG - chr1_2:48531888-48531907 Msa0074220:CDS 40.0%
TGCATCACCTGATACAAAAC+TGG + chr1_2:48531898-48531917 None:intergenic 40.0%
CAGAATCGTGTACTTTCCTA+TGG - chr1_2:48532054-48532073 Msa0074220:intron 40.0%
GTACTTTCCTATGGTATTGC+TGG - chr1_2:48532063-48532082 Msa0074220:intron 40.0%
TTGAAAACACACCTGAATGG+TGG + chr1_2:48532130-48532149 None:intergenic 40.0%
TTGACAAGTAGGGATGTAGA+AGG + chr1_2:48532372-48532391 None:intergenic 40.0%
TTCTACATCCCTACTTGTCA+AGG - chr1_2:48532371-48532390 Msa0074220:CDS 40.0%
! AGTCACGAGGATCAAACTTT+TGG - chr1_2:48532524-48532543 Msa0074220:CDS 40.0%
AGCATTCCACAAAGGAACAA+TGG + chr1_2:48533149-48533168 None:intergenic 40.0%
ATTGTTCCTTTGTGGAATGC+TGG - chr1_2:48533148-48533167 Msa0074220:intron 40.0%
TCTAATCCAGCATTCCACAA+AGG + chr1_2:48533157-48533176 None:intergenic 40.0%
AACCATGCTGAATGAAAACC+AGG - chr1_2:48533221-48533240 Msa0074220:intron 40.0%
ACCATGCTGAATGAAAACCA+GGG - chr1_2:48533222-48533241 Msa0074220:intron 40.0%
ACCAGGGGATCATATATTGT+TGG - chr1_2:48533238-48533257 Msa0074220:intron 40.0%
AAATCAGGATGGGATATGGA+TGG - chr1_2:48533396-48533415 Msa0074220:CDS 40.0%
ACTGAGTTCAATAACGGCTA+CGG + chr1_2:48533633-48533652 None:intergenic 40.0%
!!! CTGCAGTTTTTGGTGTAACA+CGG - chr1_2:48533763-48533782 Msa0074220:intron 40.0%
!!! TGCAGTTTTTGGTGTAACAC+GGG - chr1_2:48533764-48533783 Msa0074220:intron 40.0%
TGTAACACGGGATCCATTTA+TGG - chr1_2:48533776-48533795 Msa0074220:intron 40.0%
GCTCCTTAAAGTTTGATACC+TGG - chr1_2:48533904-48533923 Msa0074220:intron 40.0%
! GTTTTACTAGCAAGCTTTCC+AGG + chr1_2:48533925-48533944 None:intergenic 40.0%
AAGTCATTAACATGTGGAGC+TGG - chr1_2:48534059-48534078 Msa0074220:CDS 40.0%
!!! CACTTCATCCTTGGTGTTTT+TGG - chr1_2:48534400-48534419 Msa0074220:intron 40.0%
TGCGACTTCATCCAAAATAG+TGG - chr1_2:48534444-48534463 Msa0074220:intron 40.0%
TTATGCAATAATTCGGCTCC+AGG + chr1_2:48534496-48534515 None:intergenic 40.0%
TAACTCAACCCTTACCAAAC+CGG - chr1_2:48534600-48534619 Msa0074220:intron 40.0%
CTCGAAAATGTGCTTCTAAG+CGG + chr1_2:48534648-48534667 None:intergenic 40.0%
ATGGGATCCTACTTAGACAA+AGG + chr1_2:48534712-48534731 None:intergenic 40.0%
!! GGGAAAGTACTCTTCTTGAT+AGG - chr1_2:48534804-48534823 Msa0074220:intron 40.0%
! TCAAGGTGTTTCGCTATGTT+AGG + chr1_2:48534936-48534955 None:intergenic 40.0%
! GTGAAACACTTTTCCATGAC+TGG - chr1_2:48535148-48535167 Msa0074220:CDS 40.0%
! GAAACACTTTTCCATGACTG+GGG - chr1_2:48535150-48535169 Msa0074220:CDS 40.0%
! AATTCTGAGTTGGCCTATGT+TGG - chr1_2:48535264-48535283 Msa0074220:intron 40.0%
! AAGGCACTAATTGCATGTTG+GGG + chr1_2:48535293-48535312 None:intergenic 40.0%
! CAAGGCACTAATTGCATGTT+GGG + chr1_2:48535294-48535313 None:intergenic 40.0%
! ACAAGGCACTAATTGCATGT+TGG + chr1_2:48535295-48535314 None:intergenic 40.0%
AGTGCCTTGTCCAATAGTAA+CGG - chr1_2:48535305-48535324 Msa0074220:intron 40.0%
ATTCCTTCGATGCGAAGAAA+TGG + chr1_2:48535349-48535368 None:intergenic 40.0%
ATGTAAGTCGGAGGTGAATA+GGG + chr1_2:48535609-48535628 None:intergenic 40.0%
! TAACGCATGGTCAAAGGTTT+TGG - chr1_2:48535668-48535687 Msa0074220:intron 40.0%
AAATCCCAGTACAACAGCAA+TGG + chr1_2:48536089-48536108 None:intergenic 40.0%
GCTGTTGTACTGGGATTTAT+TGG - chr1_2:48536091-48536110 Msa0074220:intron 40.0%
TGTGAGAAGTTCAAGTACAG+AGG + chr1_2:48536187-48536206 None:intergenic 40.0%
TACAGGATTCCATGTCTCAA+CGG - chr1_2:48536219-48536238 Msa0074220:CDS 40.0%
GTGGGTAGAATTGGATTTCT+TGG + chr1_2:48536371-48536390 None:intergenic 40.0%
ATTAGCCAAATAGCCAACTG+AGG - chr1_2:48536474-48536493 Msa0074220:exon 40.0%
! GAAGTGGAGTGTAGAGGTTT+TGG + chr1_2:48529775-48529794 None:intergenic 45.0%
CCTGAGGAAAAGGAAGAGAT+AGG + chr1_2:48529807-48529826 None:intergenic 45.0%
! CCTATCTCTTCCTTTTCCTC+AGG - chr1_2:48529804-48529823 Msa0074220:three_prime_UTR 45.0%
AGAGAGATGGAGAATACCTG+AGG + chr1_2:48529823-48529842 None:intergenic 45.0%
! AAGCTAGCCTGAAGAGCTTA+TGG - chr1_2:48530749-48530768 Msa0074220:intron 45.0%
! GCCCTTGATTTTATGAGTGG+TGG - chr1_2:48530937-48530956 Msa0074220:intron 45.0%
! CTGTTAGAGCTGTAGCCTTA+TGG - chr1_2:48531031-48531050 Msa0074220:intron 45.0%
CAGAGATTTACCCACCCATA+AGG + chr1_2:48531049-48531068 None:intergenic 45.0%
ACCAACACCAAATGCTACTG+CGG + chr1_2:48531165-48531184 None:intergenic 45.0%
!! AGTAGCATTTGGTGTTGGTG+TGG - chr1_2:48531166-48531185 Msa0074220:intron 45.0%
!! GTAGCATTTGGTGTTGGTGT+GGG - chr1_2:48531167-48531186 Msa0074220:intron 45.0%
! GTTGGTGTGGGTTTTACAGA+AGG - chr1_2:48531179-48531198 Msa0074220:intron 45.0%
AGTAGATCCTCTCTAGTAGG+AGG - chr1_2:48531317-48531336 Msa0074220:intron 45.0%
!! ATGTGATTGGTGATGGATGG+TGG + chr1_2:48531475-48531494 None:intergenic 45.0%
!! GGAATGTGATTGGTGATGGA+TGG + chr1_2:48531478-48531497 None:intergenic 45.0%
TCCTGCTTCTCCTGTGAATA+TGG - chr1_2:48531603-48531622 Msa0074220:intron 45.0%
TGACTAGTGACTTAGCGGTT+TGG - chr1_2:48531709-48531728 Msa0074220:intron 45.0%
ATTGGAGCAAAGTCTCTCAG+TGG - chr1_2:48531828-48531847 Msa0074220:intron 45.0%
AACTGCACCAGCAATACCAT+AGG + chr1_2:48532073-48532092 None:intergenic 45.0%
TGAGGCAGTCAACCTTCTAT+TGG - chr1_2:48532263-48532282 Msa0074220:intron 45.0%
GCAATATTGCGGCCAATAGA+AGG + chr1_2:48532278-48532297 None:intergenic 45.0%
AGCCCTAAGTAGCATGAAAG+AGG + chr1_2:48532456-48532475 None:intergenic 45.0%
! TTCATGCTACTTAGGGCTTG+AGG - chr1_2:48532458-48532477 Msa0074220:intron 45.0%
ATGAAGGAATGAGAGTCACG+AGG - chr1_2:48532511-48532530 Msa0074220:CDS 45.0%
TCAACTCAGTGGTTGTACCA+AGG - chr1_2:48533042-48533061 Msa0074220:intron 45.0%
CAACTCAGTGGTTGTACCAA+GGG - chr1_2:48533043-48533062 Msa0074220:intron 45.0%
AACTCAGTGGTTGTACCAAG+GGG - chr1_2:48533044-48533063 Msa0074220:intron 45.0%
GTTGGTCCATTGTTCCTTTG+TGG - chr1_2:48533140-48533159 Msa0074220:intron 45.0%
CCATGCTGAATGAAAACCAG+GGG - chr1_2:48533223-48533242 Msa0074220:intron 45.0%
GCCAACAATATATGATCCCC+TGG + chr1_2:48533242-48533261 None:intergenic 45.0%
! AGGGATCAAACATTTTGGGC+AGG - chr1_2:48533589-48533608 Msa0074220:intron 45.0%
TACGGTAAGAAGCAAAGGTG+TGG + chr1_2:48533615-48533634 None:intergenic 45.0%
! GACTCGATACCTGCAGTTTT+TGG - chr1_2:48533753-48533772 Msa0074220:intron 45.0%
CGTGTTACACCAAAAACTGC+AGG + chr1_2:48533765-48533784 None:intergenic 45.0%
GCAAGATAGCTTACCCAGAA+TGG + chr1_2:48533823-48533842 None:intergenic 45.0%
TCATTAACATGTGGAGCTGG+AGG - chr1_2:48534062-48534081 Msa0074220:CDS 45.0%
!!! TAACTCACGTTGTTTTGGCC+TGG - chr1_2:48534475-48534494 Msa0074220:intron 45.0%
! GGTTTGGTAAGGGTTGAGTT+AGG + chr1_2:48534601-48534620 None:intergenic 45.0%
!! CTTACAAGCCGGTTTGGTAA+GGG + chr1_2:48534611-48534630 None:intergenic 45.0%
GAAAATGTGCTTCTAAGCGG+CGG + chr1_2:48534645-48534664 None:intergenic 45.0%
AGCTATATCTCATCCAGCGA+GGG - chr1_2:48534666-48534685 Msa0074220:intron 45.0%
AAATGTACTAGAGCGTGGAC+CGG - chr1_2:48535113-48535132 Msa0074220:CDS 45.0%
TTAATGGCTTACCCCAGTCA+TGG + chr1_2:48535164-48535183 None:intergenic 45.0%
GTGCCTTGTCCAATAGTAAC+GGG - chr1_2:48535306-48535325 Msa0074220:intron 45.0%
TGCCTTGTCCAATAGTAACG+GGG - chr1_2:48535307-48535326 Msa0074220:intron 45.0%
CTACCATTTCTTCGCATCGA+AGG - chr1_2:48535343-48535362 Msa0074220:intron 45.0%
TTTGGGTCCATTTGACGAGT+CGG - chr1_2:48535431-48535450 Msa0074220:intron 45.0%
GATGTAAGTCGGAGGTGAAT+AGG + chr1_2:48535610-48535629 None:intergenic 45.0%
TCGCAATTGATGTAAGTCGG+AGG + chr1_2:48535618-48535637 None:intergenic 45.0%
GCTCAATAACGCATGGTCAA+AGG - chr1_2:48535662-48535681 Msa0074220:intron 45.0%
! GTAGCCTCTAGTCTTTCCAT+TGG - chr1_2:48536259-48536278 Msa0074220:intron 45.0%
CACTCCAATGGAAAGACTAG+AGG + chr1_2:48536266-48536285 None:intergenic 45.0%
GAGCTCAACTCATTCTGAGT+TGG + chr1_2:48536327-48536346 None:intergenic 45.0%
! ATTTGGGGTGTGGGTAGAAT+TGG + chr1_2:48536380-48536399 None:intergenic 45.0%
TCTACAAAGGGTTCCTCAGT+TGG + chr1_2:48536490-48536509 None:intergenic 45.0%
ACCCTTTGTAGACTGTGCTA+TGG - chr1_2:48536498-48536517 Msa0074220:five_prime_UTR 45.0%
GCCATAGCACAGTCTACAAA+GGG + chr1_2:48536502-48536521 None:intergenic 45.0%
AGCCATAGCACAGTCTACAA+AGG + chr1_2:48536503-48536522 None:intergenic 45.0%
!!! TTAAAAATCATTTTTTTAAA+AGG - chr1_2:48530384-48530403 Msa0074220:intron 5.0%
!! AAAAAAATAAAAAAATTTAC+AGG + chr1_2:48530532-48530551 None:intergenic 5.0%
!! TTAAATAAAATGAAATTATT+AGG + chr1_2:48535808-48535827 None:intergenic 5.0%
CTGGCGCAAAACCAAAAGAG+TGG - chr1_2:48529607-48529626 Msa0074220:three_prime_UTR 50.0%
GTGAAGGAAGTGGAGTGTAG+AGG + chr1_2:48529781-48529800 None:intergenic 50.0%
AGATAGGACGGTGAAGGAAG+TGG + chr1_2:48529791-48529810 None:intergenic 50.0%
AGGAAGAGATAGGACGGTGA+AGG + chr1_2:48529797-48529816 None:intergenic 50.0%
AGGAGAGAGAGAGAGAGAGA+TGG + chr1_2:48529836-48529855 None:intergenic 50.0%
!! TAGAGCTGTAGCCTTATGGG+TGG - chr1_2:48531035-48531054 Msa0074220:intron 50.0%
!! AGAGCTGTAGCCTTATGGGT+GGG - chr1_2:48531036-48531055 Msa0074220:intron 50.0%
GGTGGGATGTGGAATGTGAT+TGG + chr1_2:48531488-48531507 None:intergenic 50.0%
GCCATATTCACAGGAGAAGC+AGG + chr1_2:48531607-48531626 None:intergenic 50.0%
TCTTGGAACAGCCACCATTC+AGG - chr1_2:48532116-48532135 Msa0074220:intron 50.0%
ACTCAGTGGTTGTACCAAGG+GGG - chr1_2:48533045-48533064 Msa0074220:intron 50.0%
! TCATTGGTTGCATACCCCCT+TGG + chr1_2:48533062-48533081 None:intergenic 50.0%
!! CCCCTGGTTTTCATTCAGCA+TGG + chr1_2:48533226-48533245 None:intergenic 50.0%
ATTCTACTAGGCATGTGCCG+TGG - chr1_2:48533267-48533286 Msa0074220:intron 50.0%
ACGGCTACGGTAAGAAGCAA+AGG + chr1_2:48533620-48533639 None:intergenic 50.0%
GCAGGAAGCCAAAAACACCA+AGG + chr1_2:48534411-48534430 None:intergenic 50.0%
!! CCTTACAAGCCGGTTTGGTA+AGG + chr1_2:48534612-48534631 None:intergenic 50.0%
!! CCTTACCAAACCGGCTTGTA+AGG - chr1_2:48534609-48534628 Msa0074220:intron 50.0%
!! TACCAAACCGGCTTGTAAGG+TGG - chr1_2:48534612-48534631 Msa0074220:intron 50.0%
!! ACCAAACCGGCTTGTAAGGT+GGG - chr1_2:48534613-48534632 Msa0074220:intron 50.0%
ATAGTCCCCACCTTACAAGC+CGG + chr1_2:48534622-48534641 None:intergenic 50.0%
GAGCTATATCTCATCCAGCG+AGG - chr1_2:48534665-48534684 Msa0074220:intron 50.0%
GTTGTTACAAAGTCCCTCGC+TGG + chr1_2:48534682-48534701 None:intergenic 50.0%
GTTTCACCCTTGCATTGCAC+CGG + chr1_2:48535135-48535154 None:intergenic 50.0%
GGAGCTACTTAGTTACCCCA+GGG + chr1_2:48535221-48535240 None:intergenic 50.0%
TGGAGCTACTTAGTTACCCC+AGG + chr1_2:48535222-48535241 None:intergenic 50.0%
! TCTGAGTTGGCCTATGTTGG+CGG - chr1_2:48535267-48535286 Msa0074220:intron 50.0%
GCCTTGTCCAATAGTAACGG+GGG - chr1_2:48535308-48535327 Msa0074220:intron 50.0%
ACCCCCGTTACTATTGGACA+AGG + chr1_2:48535312-48535331 None:intergenic 50.0%
! GAAGAAATGGTAGTGCGCAG+AGG + chr1_2:48535336-48535355 None:intergenic 50.0%
TTGGGTCCATTTGACGAGTC+GGG - chr1_2:48535432-48535451 Msa0074220:intron 50.0%
CCCAGTACAACAGCAATGGA+CGG + chr1_2:48536085-48536104 None:intergenic 50.0%
! CCGTCCATTGCTGTTGTACT+GGG - chr1_2:48536082-48536101 Msa0074220:intron 50.0%
AGGATTCCATGTCTCAACGG+AGG - chr1_2:48536222-48536241 Msa0074220:CDS 50.0%
GGGTTCCTCAGTTGGCTATT+TGG + chr1_2:48536482-48536501 None:intergenic 50.0%
GTTTGCGCCGCAGTAGCATT+TGG - chr1_2:48531155-48531174 Msa0074220:intron 55.0%
!! GCCGCAGTAGCATTTGGTGT+TGG - chr1_2:48531161-48531180 Msa0074220:intron 55.0%
!! CCAAACCGGCTTGTAAGGTG+GGG - chr1_2:48534614-48534633 Msa0074220:intron 55.0%
!! AGGGCTCTAGAGGATCTCCT+TGG + chr1_2:48535202-48535221 None:intergenic 55.0%
!! AAGGAGATCCTCTAGAGCCC+TGG - chr1_2:48535201-48535220 Msa0074220:intron 55.0%
!! AGGAGATCCTCTAGAGCCCT+GGG - chr1_2:48535202-48535221 Msa0074220:intron 55.0%
! TAGTTACCCCAGGGCTCTAG+AGG + chr1_2:48535212-48535231 None:intergenic 55.0%
!! AGAGGCACCCCCGTTACTAT+TGG + chr1_2:48535318-48535337 None:intergenic 55.0%
! GAGGATCCCGACTCGTCAAA+TGG + chr1_2:48535441-48535460 None:intergenic 55.0%
! GCCGTCCATTGCTGTTGTAC+TGG - chr1_2:48536081-48536100 Msa0074220:intron 55.0%
GAGATGCCTCCGTTGAGACA+TGG + chr1_2:48536231-48536250 None:intergenic 55.0%
!! GTCTCAACGGAGGCATCTCT+TGG - chr1_2:48536232-48536251 Msa0074220:intron 55.0%
CCCCACCTTACAAGCCGGTT+TGG + chr1_2:48534617-48534636 None:intergenic 60.0%
CGTGGACCGGTGCAATGCAA+GGG - chr1_2:48535126-48535145 Msa0074220:CDS 60.0%
!! GGAGATCCTCTAGAGCCCTG+GGG - chr1_2:48535203-48535222 Msa0074220:intron 60.0%
CATGTTGGGGCCGCCAACAT+AGG + chr1_2:48535280-48535299 None:intergenic 60.0%
GCGTGGACCGGTGCAATGCA+AGG - chr1_2:48535125-48535144 Msa0074220:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 48529581 48536585 48529581 ID=Msa0074220;Name=Msa0074220
chr1_2 mRNA 48529581 48536585 48529581 ID=Msa0074220-mRNA-1;Parent=Msa0074220;Name=Msa0074220-mRNA-1;_AED=0.16;_eAED=0.16;_QI=109|1|1|1|1|1|14|270|358
chr1_2 exon 48529581 48529942 48529581 ID=Msa0074220-mRNA-1:exon:14810;Parent=Msa0074220-mRNA-1
chr1_2 exon 48530027 48530084 48530027 ID=Msa0074220-mRNA-1:exon:14809;Parent=Msa0074220-mRNA-1
chr1_2 exon 48531888 48531946 48531888 ID=Msa0074220-mRNA-1:exon:14808;Parent=Msa0074220-mRNA-1
chr1_2 exon 48532338 48532416 48532338 ID=Msa0074220-mRNA-1:exon:14807;Parent=Msa0074220-mRNA-1
chr1_2 exon 48532499 48532555 48532499 ID=Msa0074220-mRNA-1:exon:14806;Parent=Msa0074220-mRNA-1
chr1_2 exon 48532749 48532798 48532749 ID=Msa0074220-mRNA-1:exon:14805;Parent=Msa0074220-mRNA-1
chr1_2 exon 48533365 48533446 48533365 ID=Msa0074220-mRNA-1:exon:14804;Parent=Msa0074220-mRNA-1
chr1_2 exon 48533852 48533908 48533852 ID=Msa0074220-mRNA-1:exon:14803;Parent=Msa0074220-mRNA-1
chr1_2 exon 48534029 48534109 48534029 ID=Msa0074220-mRNA-1:exon:14802;Parent=Msa0074220-mRNA-1
chr1_2 exon 48534257 48534344 48534257 ID=Msa0074220-mRNA-1:exon:14801;Parent=Msa0074220-mRNA-1
chr1_2 exon 48534935 48535011 48534935 ID=Msa0074220-mRNA-1:exon:14800;Parent=Msa0074220-mRNA-1
chr1_2 exon 48535113 48535201 48535113 ID=Msa0074220-mRNA-1:exon:14799;Parent=Msa0074220-mRNA-1
chr1_2 exon 48536174 48536245 48536174 ID=Msa0074220-mRNA-1:exon:14798;Parent=Msa0074220-mRNA-1
chr1_2 exon 48536341 48536585 48536341 ID=Msa0074220-mRNA-1:exon:14797;Parent=Msa0074220-mRNA-1
chr1_2 five_prime_UTR 48536477 48536585 48536477 ID=Msa0074220-mRNA-1:five_prime_utr;Parent=Msa0074220-mRNA-1
chr1_2 CDS 48536341 48536476 48536341 ID=Msa0074220-mRNA-1:cds;Parent=Msa0074220-mRNA-1
chr1_2 CDS 48536174 48536245 48536174 ID=Msa0074220-mRNA-1:cds;Parent=Msa0074220-mRNA-1
chr1_2 CDS 48535113 48535201 48535113 ID=Msa0074220-mRNA-1:cds;Parent=Msa0074220-mRNA-1
chr1_2 CDS 48534935 48535011 48534935 ID=Msa0074220-mRNA-1:cds;Parent=Msa0074220-mRNA-1
chr1_2 CDS 48534257 48534344 48534257 ID=Msa0074220-mRNA-1:cds;Parent=Msa0074220-mRNA-1
chr1_2 CDS 48534029 48534109 48534029 ID=Msa0074220-mRNA-1:cds;Parent=Msa0074220-mRNA-1
chr1_2 CDS 48533852 48533908 48533852 ID=Msa0074220-mRNA-1:cds;Parent=Msa0074220-mRNA-1
chr1_2 CDS 48533365 48533446 48533365 ID=Msa0074220-mRNA-1:cds;Parent=Msa0074220-mRNA-1
chr1_2 CDS 48532749 48532798 48532749 ID=Msa0074220-mRNA-1:cds;Parent=Msa0074220-mRNA-1
chr1_2 CDS 48532499 48532555 48532499 ID=Msa0074220-mRNA-1:cds;Parent=Msa0074220-mRNA-1
chr1_2 CDS 48532338 48532416 48532338 ID=Msa0074220-mRNA-1:cds;Parent=Msa0074220-mRNA-1
chr1_2 CDS 48531888 48531946 48531888 ID=Msa0074220-mRNA-1:cds;Parent=Msa0074220-mRNA-1
chr1_2 CDS 48530027 48530084 48530027 ID=Msa0074220-mRNA-1:cds;Parent=Msa0074220-mRNA-1
chr1_2 CDS 48529851 48529942 48529851 ID=Msa0074220-mRNA-1:cds;Parent=Msa0074220-mRNA-1
chr1_2 three_prime_UTR 48529581 48529850 48529581 ID=Msa0074220-mRNA-1:three_prime_utr;Parent=Msa0074220-mRNA-1
Gene Sequence

>Msa0074220

ATGAGTTTGGCTTCTGTTGTTCACAATGGCATCCAAACTCCATTGAATCATAATGCCCTTATCAGGATCAGGGTTTCAAATTCCAAAACCTCTACACTCCACTTCCTTCACCGTCCTATCTCTTCCTTTTCCTCAGTGGATCGTTCTCTCCGTCTTCCACTTGCATGTATCAAACAAATTCGTCAGCTTGATCGATTTCATTCTTCAGATGTGAAGAGAATTACTGCTCAACGAGATGATGAGATATCTTCTACTGAGGAGTCACAGAGTTCTGCTGTTAGAGCTGTAGCCTTATGGGTTTGCGCCGCAGTAGCATTTGGTGTTGGTGTGGGTTTTACAGAAGGTTATGAAAAGGCATCAGAATTCTTTGCTGGATACATATTGGAGCAAAGTCTCTCAGTGGATAATCTCTTTGTCTTTGTTCTAATATTCAAATACTTCAAAGTGCCAGTTTTGTATCAGAATCGTGTACTTTCCTATGGTATTGCTGGTGCAGTTGTTTTTCGCCTGATAATAATACTTCTTGGAACAGCCACCATTCAGAGGTTTGAGGCAGTCAACCTTCTATTGGCCGCAATATTGCTCTTCTCATCATTTAAGCTATTTGCTAGTGAAGAAGAAGAGTCAGACTTATCTGACAACTTTTTGGTGAAGACATGCCAGAAATTGATCCCTGTAACAACATATTATGATGGAAACAAGTTCATAACAAATCAGGATGGGATATGGATGGCCACACCTTTGCTTCTTACCGTAGCCGTTATTGAACTCAGTGACATTGCATTTGCAGTGGACTCGATACCTGCAGTTTTTGGTGTAACACGGGATCCATTTATGGTGTTTTCTTCTAATCTTTTTGCCATTCTGGGTTTGAGGTCACTTTACATGATAATTTCTGAGGGTATGTCAGAATTGAAGTACTTACAGCCGTCCATTGCTGTTGTACTGGGATTTATTGGGTGTAAGATGATCTTGGACTATTTTGGATTCCATGTCTCAACGGAGGCATCTCTTGGTTTTGTAGCCTCTAGTCTTTCCATTGGAGTGATATTAAGTCTGGCTAACAAATCTGACTAG

Protein sequence

>Msa0074220

MSLASVVHNGIQTPLNHNALIRIRVSNSKTSTLHFLHRPISSFSSVDRSLRLPLACIKQIRQLDRFHSSDVKRITAQRDDEISSTEESQSSAVRAVALWVCAAVAFGVGVGFTEGYEKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVLYQNRVLSYGIAGAVVFRLIIILLGTATIQRFEAVNLLLAAILLFSSFKLFASEEEESDLSDNFLVKTCQKLIPVTTYYDGNKFITNQDGIWMATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFMVFSSNLFAILGLRSLYMIISEGMSELKYLQPSIAVVLGFIGCKMILDYFGFHVSTEASLGFVASSLSIGVILSLANKSD*