AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0155350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0155350 MtrunA17_Chr5g0418001 94.884 215 8 2 1 215 1 212 2.22e-149 413
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0155350 AT5G43750.1 62.255 204 73 2 12 215 13 212 1.62e-89 262

Find 59 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAATTTCAGGAACATTT+TGG 0.115202 1_4:-20601441 Msa0155350:intron
TTCCCACCAGCCATTGCTGC+TGG 0.238546 1_4:-20600965 Msa0155350:CDS
TGGGATTTCAATGACAAATA+TGG 0.271183 1_4:-20600653 Msa0155350:CDS
CTTTCCATGTTGTATATTTG+AGG 0.297169 1_4:+20600722 None:intergenic
GGTCAACAGGGTCTTCATTA+AGG 0.320744 1_4:+20601982 None:intergenic
CTAATGCAGGGCTTATTTCA+TGG 0.328399 1_4:-20600991 Msa0155350:intron
GAATGCCATTAGTACGAAAT+TGG 0.332918 1_4:+20601961 None:intergenic
ACTATAATTCCATGAGCATA+TGG 0.355011 1_4:-20600673 Msa0155350:CDS
GTTGACCAATTTCGTACTAA+TGG 0.357957 1_4:-20601966 Msa0155350:CDS
TTTGAGTATGGAATATTTGA+TGG 0.360719 1_4:-20601836 Msa0155350:CDS
TTATAGGAAGAATTTGAGTA+TGG 0.374124 1_4:-20601848 Msa0155350:intron
ATGACAAATATGGAGACCTT+TGG 0.379641 1_4:-20600643 Msa0155350:CDS
TTAGTACGAAATTGGTCAAC+AGG 0.388128 1_4:+20601969 None:intergenic
GTTTGCTATAGAATAGAAAC+AGG 0.388957 1_4:+20600439 None:intergenic
TTTAAATATAATGAATATGA+AGG 0.390038 1_4:-20600528 Msa0155350:three_prime_UTR
CCAACACCACTCAACATTCA+TGG 0.401594 1_4:-20602080 Msa0155350:CDS
TCAAAGTGATGAGGTTGATC+AGG 0.402133 1_4:+20600746 None:intergenic
TGGGGTATTCTTCGATGTTC+CGG 0.405466 1_4:-20600945 Msa0155350:intron
TGACAAATATGGAGACCTTT+GGG 0.407790 1_4:-20600642 Msa0155350:CDS
TCCCACCAGCCATTGCTGCT+GGG 0.411279 1_4:-20600964 Msa0155350:CDS
ACAAAGTTCTTGTTGAATGC+TGG 0.429995 1_4:-20602026 Msa0155350:CDS
GAGTATTTGTTCATTGGAGC+AGG 0.434030 1_4:-20600809 Msa0155350:CDS
AGTTTGGATGGAGTGATGAT+AGG 0.472201 1_4:+20602125 None:intergenic
CCCACCAGCCATTGCTGCTG+GGG 0.474226 1_4:-20600963 Msa0155350:CDS
GGTCATCATACTTTCAATGA+AGG 0.504834 1_4:-20601815 Msa0155350:CDS
CAAATATACAACATGGAAAG+AGG 0.518390 1_4:-20600719 Msa0155350:CDS
CTATAATTCCATGAGCATAT+GGG 0.524970 1_4:-20600672 Msa0155350:CDS
TTGGATGGAGTGATGATAGG+AGG 0.525418 1_4:+20602128 None:intergenic
CCATGAATGTTGAGTGGTGT+TGG 0.531670 1_4:+20602080 None:intergenic
ATTGAAATCCCATATGCTCA+TGG 0.535585 1_4:+20600664 None:intergenic
ACAGGGTCTTCATTAAGGTC+AGG 0.548106 1_4:+20601987 None:intergenic
GAGTGGTGTTGGAGAAGAGA+AGG 0.548650 1_4:+20602091 None:intergenic
TGGATGGAGTGATGATAGGA+GGG 0.548771 1_4:+20602129 None:intergenic
AGAAAAGTAACAAATTTACA+AGG 0.555667 1_4:+20600501 None:intergenic
AATACCCCAGCAGCAATGGC+TGG 0.556419 1_4:+20600959 None:intergenic
GAAGAATACCCCAGCAGCAA+TGG 0.556648 1_4:+20600955 None:intergenic
AACATACCTTGAAATCCAGT+GGG 0.557528 1_4:+20601382 None:intergenic
AATGAAGGTGAAGAAAAGAA+AGG 0.563141 1_4:-20601800 Msa0155350:intron
CCCCAGCAGCAATGGCTGGT+GGG 0.565163 1_4:+20600963 None:intergenic
ATGTGTCAGACTTGGTTGGT+TGG 0.567628 1_4:+20602179 None:intergenic
ACCCCAGCAGCAATGGCTGG+TGG 0.569943 1_4:+20600962 None:intergenic
AGGAGGGACAAGTGAGAGTG+AGG 0.582918 1_4:+20602145 None:intergenic
ATTTGAGGTTCAAAGTGATG+AGG 0.590006 1_4:+20600737 None:intergenic
CGCCATGTGTCAGACTTGGT+TGG 0.594565 1_4:+20602175 None:intergenic
AGTATTTGTTCATTGGAGCA+GGG 0.597436 1_4:-20600808 Msa0155350:CDS
AAGGATGACATAATAGCAGT+AGG 0.616111 1_4:-20601409 Msa0155350:CDS
ATAGCGCCATGTGTCAGACT+TGG 0.620326 1_4:+20602171 None:intergenic
AAACATACCTTGAAATCCAG+TGG 0.629247 1_4:+20601381 None:intergenic
TCTTGATAGTAAAATCCCAA+AGG 0.630483 1_4:+20600627 None:intergenic
TAGTACGAAATTGGTCAACA+GGG 0.671278 1_4:+20601970 None:intergenic
GAAAAGTAACAAATTTACAA+GGG 0.674092 1_4:+20600502 None:intergenic
TGAACCTCAAATATACAACA+TGG 0.679208 1_4:-20600726 Msa0155350:CDS
AACCAACCAAGTCTGACACA+TGG 0.684292 1_4:-20602177 Msa0155350:exon
CATACCTTGAAATCCAGTGG+GGG 0.685937 1_4:+20601384 None:intergenic
TTTGCTATAGAATAGAAACA+GGG 0.698214 1_4:+20600440 None:intergenic
ATACCTTGAAATCCAGTGGG+GGG 0.705939 1_4:+20601385 None:intergenic
TTGCTATAGAATAGAAACAG+GGG 0.711038 1_4:+20600441 None:intergenic
ACATACCTTGAAATCCAGTG+GGG 0.724590 1_4:+20601383 None:intergenic
AATATGCCATGAATGTTGAG+TGG 0.727294 1_4:+20602074 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTATAGTACTA+TGG - chr1_4:20600683-20600702 Msa0155350:CDS 10.0%
!! AAAAAAAAAATTAGAGAATA+AGG - chr1_4:20600943-20600962 Msa0155350:intron 10.0%
!! TTTAAATATAATGAATATGA+AGG - chr1_4:20602066-20602085 Msa0155350:CDS 10.0%
!!! TTTTTTTTTTTATAGTACTA+TGG - chr1_4:20600683-20600702 Msa0155350:CDS 10.0%
!! AAAAAAAAAATTAGAGAATA+AGG - chr1_4:20600943-20600962 Msa0155350:intron 10.0%
!! TTTAAATATAATGAATATGA+AGG - chr1_4:20602066-20602085 Msa0155350:CDS 10.0%
!! GTATATATATGAAAAAATAC+AGG + chr1_4:20600661-20600680 None:intergenic 15.0%
!! GTATATATATGAAAAAATAC+AGG + chr1_4:20600661-20600680 None:intergenic 15.0%
!! TATATATGAAAAAATACAGG+TGG + chr1_4:20600658-20600677 None:intergenic 20.0%
!!! CAATCACTTTTGTTTTTTAA+TGG - chr1_4:20600870-20600889 Msa0155350:intron 20.0%
!!! CAATTAACATTTAGAATTAC+CGG + chr1_4:20601671-20601690 None:intergenic 20.0%
!!! TTTTACTATCAAGAAGAATA+AGG - chr1_4:20601976-20601995 Msa0155350:CDS 20.0%
!! GAAAAGTAACAAATTTACAA+GGG + chr1_4:20602095-20602114 None:intergenic 20.0%
!! AGAAAAGTAACAAATTTACA+AGG + chr1_4:20602096-20602115 None:intergenic 20.0%
!! TATATATGAAAAAATACAGG+TGG + chr1_4:20600658-20600677 None:intergenic 20.0%
!!! CAATCACTTTTGTTTTTTAA+TGG - chr1_4:20600870-20600889 Msa0155350:intron 20.0%
!!! CAATTAACATTTAGAATTAC+CGG + chr1_4:20601671-20601690 None:intergenic 20.0%
!!! TTTTACTATCAAGAAGAATA+AGG - chr1_4:20601976-20601995 Msa0155350:CDS 20.0%
!! GAAAAGTAACAAATTTACAA+GGG + chr1_4:20602095-20602114 None:intergenic 20.0%
!! AGAAAAGTAACAAATTTACA+AGG + chr1_4:20602096-20602115 None:intergenic 20.0%
!!! TTGTTTTGTGTGGATTTTAT+AGG - chr1_4:20600730-20600749 Msa0155350:CDS 25.0%
! TTATAGGAAGAATTTGAGTA+TGG - chr1_4:20600746-20600765 Msa0155350:CDS 25.0%
! TTTGAGTATGGAATATTTGA+TGG - chr1_4:20600758-20600777 Msa0155350:CDS 25.0%
!!! AATGTTGATTTTATTGTCGA+AGG - chr1_4:20600993-20601012 Msa0155350:intron 25.0%
!! ATCAATTTCAGGAACATTTT+GGG - chr1_4:20601154-20601173 Msa0155350:intron 25.0%
! TTGTAATACACGTTAGAAAA+TGG + chr1_4:20601247-20601266 None:intergenic 25.0%
! ACTAATGAATAAATAAGTCG+TGG - chr1_4:20601351-20601370 Msa0155350:intron 25.0%
! AACGATTATAGTCAAAATTG+TGG + chr1_4:20601561-20601580 None:intergenic 25.0%
!!! TCTAATTTTGATTCTAATGC+AGG - chr1_4:20601590-20601609 Msa0155350:intron 25.0%
!!! CTAATTTTGATTCTAATGCA+GGG - chr1_4:20601591-20601610 Msa0155350:intron 25.0%
! AGAAATCAATTGATACATTG+AGG - chr1_4:20601716-20601735 Msa0155350:intron 25.0%
! TAAGTACAATGTATGTTTCA+GGG - chr1_4:20601761-20601780 Msa0155350:intron 25.0%
!! TGTATTTTGCATTATTGAGA+TGG - chr1_4:20601820-20601839 Msa0155350:CDS 25.0%
!! TTTGCTATAGAATAGAAACA+GGG + chr1_4:20602157-20602176 None:intergenic 25.0%
!!! CATACATTTTTTTTAGACAG+AGG + chr1_4:20602201-20602220 None:intergenic 25.0%
! TATGTGTTAAGATTCTTTCA+GGG - chr1_4:20602217-20602236 Msa0155350:five_prime_UTR 25.0%
!!! TTGTTTTGTGTGGATTTTAT+AGG - chr1_4:20600730-20600749 Msa0155350:CDS 25.0%
! TTATAGGAAGAATTTGAGTA+TGG - chr1_4:20600746-20600765 Msa0155350:CDS 25.0%
! TTTGAGTATGGAATATTTGA+TGG - chr1_4:20600758-20600777 Msa0155350:CDS 25.0%
!!! AATGTTGATTTTATTGTCGA+AGG - chr1_4:20600993-20601012 Msa0155350:intron 25.0%
!! ATCAATTTCAGGAACATTTT+GGG - chr1_4:20601154-20601173 Msa0155350:intron 25.0%
! TTGTAATACACGTTAGAAAA+TGG + chr1_4:20601247-20601266 None:intergenic 25.0%
! ACTAATGAATAAATAAGTCG+TGG - chr1_4:20601351-20601370 Msa0155350:intron 25.0%
! AACGATTATAGTCAAAATTG+TGG + chr1_4:20601561-20601580 None:intergenic 25.0%
!!! TCTAATTTTGATTCTAATGC+AGG - chr1_4:20601590-20601609 Msa0155350:intron 25.0%
!!! CTAATTTTGATTCTAATGCA+GGG - chr1_4:20601591-20601610 Msa0155350:intron 25.0%
! AGAAATCAATTGATACATTG+AGG - chr1_4:20601716-20601735 Msa0155350:intron 25.0%
! TAAGTACAATGTATGTTTCA+GGG - chr1_4:20601761-20601780 Msa0155350:intron 25.0%
!! TGTATTTTGCATTATTGAGA+TGG - chr1_4:20601820-20601839 Msa0155350:CDS 25.0%
!! TTTGCTATAGAATAGAAACA+GGG + chr1_4:20602157-20602176 None:intergenic 25.0%
!!! CATACATTTTTTTTAGACAG+AGG + chr1_4:20602201-20602220 None:intergenic 25.0%
! TGTTGAGTTTTTGTTACTCT+TGG + chr1_4:20600551-20600570 None:intergenic 30.0%
!!! TGAGATTTGTTTGTTTTGTG+TGG - chr1_4:20600720-20600739 Msa0155350:CDS 30.0%
AATGAAGGTGAAGAAAAGAA+AGG - chr1_4:20600794-20600813 Msa0155350:CDS 30.0%
TTAATGGAAATTGAAGCATG+TGG - chr1_4:20600886-20600905 Msa0155350:intron 30.0%
TAGAAAAACATATACACGCT+TGG + chr1_4:20601122-20601141 None:intergenic 30.0%
! GATCAATTTCAGGAACATTT+TGG - chr1_4:20601153-20601172 Msa0155350:intron 30.0%
! TCAATTTCAGGAACATTTTG+GGG - chr1_4:20601155-20601174 Msa0155350:intron 30.0%
ATAGTCAAAATTGTGGTCAA+GGG + chr1_4:20601554-20601573 None:intergenic 30.0%
TATAGTCAAAATTGTGGTCA+AGG + chr1_4:20601555-20601574 None:intergenic 30.0%
CTGAAACATACATTGTACTT+AGG + chr1_4:20601762-20601781 None:intergenic 30.0%
CTAAGTACAATGTATGTTTC+AGG - chr1_4:20601760-20601779 Msa0155350:intron 30.0%
AAGTACAATGTATGTTTCAG+GGG - chr1_4:20601762-20601781 Msa0155350:intron 30.0%
TGAACCTCAAATATACAACA+TGG - chr1_4:20601868-20601887 Msa0155350:intron 30.0%
CTTTCCATGTTGTATATTTG+AGG + chr1_4:20601875-20601894 None:intergenic 30.0%
CAAATATACAACATGGAAAG+AGG - chr1_4:20601875-20601894 Msa0155350:intron 30.0%
ACTATAATTCCATGAGCATA+TGG - chr1_4:20601921-20601940 Msa0155350:intron 30.0%
CTATAATTCCATGAGCATAT+GGG - chr1_4:20601922-20601941 Msa0155350:intron 30.0%
TGGGATTTCAATGACAAATA+TGG - chr1_4:20601941-20601960 Msa0155350:intron 30.0%
! TCTTGATAGTAAAATCCCAA+AGG + chr1_4:20601970-20601989 None:intergenic 30.0%
! CTTTTGTCTATATATGTGCA+TGG - chr1_4:20602037-20602056 Msa0155350:CDS 30.0%
TTGCTATAGAATAGAAACAG+GGG + chr1_4:20602156-20602175 None:intergenic 30.0%
!! GTTTGCTATAGAATAGAAAC+AGG + chr1_4:20602158-20602177 None:intergenic 30.0%
GTATGTGTTAAGATTCTTTC+AGG - chr1_4:20602216-20602235 Msa0155350:five_prime_UTR 30.0%
! TGTTGAGTTTTTGTTACTCT+TGG + chr1_4:20600551-20600570 None:intergenic 30.0%
!!! TGAGATTTGTTTGTTTTGTG+TGG - chr1_4:20600720-20600739 Msa0155350:CDS 30.0%
AATGAAGGTGAAGAAAAGAA+AGG - chr1_4:20600794-20600813 Msa0155350:CDS 30.0%
TTAATGGAAATTGAAGCATG+TGG - chr1_4:20600886-20600905 Msa0155350:intron 30.0%
TAGAAAAACATATACACGCT+TGG + chr1_4:20601122-20601141 None:intergenic 30.0%
! GATCAATTTCAGGAACATTT+TGG - chr1_4:20601153-20601172 Msa0155350:intron 30.0%
! TCAATTTCAGGAACATTTTG+GGG - chr1_4:20601155-20601174 Msa0155350:intron 30.0%
ATAGTCAAAATTGTGGTCAA+GGG + chr1_4:20601554-20601573 None:intergenic 30.0%
TATAGTCAAAATTGTGGTCA+AGG + chr1_4:20601555-20601574 None:intergenic 30.0%
CTGAAACATACATTGTACTT+AGG + chr1_4:20601762-20601781 None:intergenic 30.0%
CTAAGTACAATGTATGTTTC+AGG - chr1_4:20601760-20601779 Msa0155350:intron 30.0%
AAGTACAATGTATGTTTCAG+GGG - chr1_4:20601762-20601781 Msa0155350:intron 30.0%
TGAACCTCAAATATACAACA+TGG - chr1_4:20601868-20601887 Msa0155350:intron 30.0%
CTTTCCATGTTGTATATTTG+AGG + chr1_4:20601875-20601894 None:intergenic 30.0%
CAAATATACAACATGGAAAG+AGG - chr1_4:20601875-20601894 Msa0155350:intron 30.0%
ACTATAATTCCATGAGCATA+TGG - chr1_4:20601921-20601940 Msa0155350:intron 30.0%
CTATAATTCCATGAGCATAT+GGG - chr1_4:20601922-20601941 Msa0155350:intron 30.0%
TGGGATTTCAATGACAAATA+TGG - chr1_4:20601941-20601960 Msa0155350:intron 30.0%
! TCTTGATAGTAAAATCCCAA+AGG + chr1_4:20601970-20601989 None:intergenic 30.0%
! CTTTTGTCTATATATGTGCA+TGG - chr1_4:20602037-20602056 Msa0155350:CDS 30.0%
TTGCTATAGAATAGAAACAG+GGG + chr1_4:20602156-20602175 None:intergenic 30.0%
!! GTTTGCTATAGAATAGAAAC+AGG + chr1_4:20602158-20602177 None:intergenic 30.0%
!!! GATTTTGAAGTGAGTTTGGA+TGG + chr1_4:20600484-20600503 None:intergenic 35.0%
!!! GAAGGATTTTGAAGTGAGTT+TGG + chr1_4:20600488-20600507 None:intergenic 35.0%
AATATGCCATGAATGTTGAG+TGG + chr1_4:20600523-20600542 None:intergenic 35.0%
ACAAAGTTCTTGTTGAATGC+TGG - chr1_4:20600568-20600587 Msa0155350:three_prime_UTR 35.0%
TAGTACGAAATTGGTCAACA+GGG + chr1_4:20600627-20600646 None:intergenic 35.0%
TTAGTACGAAATTGGTCAAC+AGG + chr1_4:20600628-20600647 None:intergenic 35.0%
GTTGACCAATTTCGTACTAA+TGG - chr1_4:20600628-20600647 Msa0155350:CDS 35.0%
GAATGCCATTAGTACGAAAT+TGG + chr1_4:20600636-20600655 None:intergenic 35.0%
GGTCATCATACTTTCAATGA+AGG - chr1_4:20600779-20600798 Msa0155350:CDS 35.0%
CCAATGGTAAGAGTTTGATA+TGG + chr1_4:20601043-20601062 None:intergenic 35.0%
CCATATCAAACTCTTACCAT+TGG - chr1_4:20601040-20601059 Msa0155350:intron 35.0%
CAAAGCTCATGATCAATTTC+AGG - chr1_4:20601143-20601162 Msa0155350:intron 35.0%
!!! AACATTTTGGGGTGCAATTA+AGG - chr1_4:20601166-20601185 Msa0155350:intron 35.0%
AAGGATGACATAATAGCAGT+AGG - chr1_4:20601185-20601204 Msa0155350:intron 35.0%
AACATACCTTGAAATCCAGT+GGG + chr1_4:20601215-20601234 None:intergenic 35.0%
AAACATACCTTGAAATCCAG+TGG + chr1_4:20601216-20601235 None:intergenic 35.0%
ACACGTTAGAAAATGGTACA+AGG + chr1_4:20601240-20601259 None:intergenic 35.0%
! ACCACAATTTGGAGGTTTTA+CGG + chr1_4:20601302-20601321 None:intergenic 35.0%
CTAATTGAACCACAATTTGG+AGG + chr1_4:20601310-20601329 None:intergenic 35.0%
GAGCTAATTGAACCACAATT+TGG + chr1_4:20601313-20601332 None:intergenic 35.0%
TAGTCAAAATTGTGGTCAAG+GGG + chr1_4:20601553-20601572 None:intergenic 35.0%
AGTACAATGTATGTTTCAGG+GGG - chr1_4:20601763-20601782 Msa0155350:intron 35.0%
AGTATTTGTTCATTGGAGCA+GGG - chr1_4:20601786-20601805 Msa0155350:intron 35.0%
! ATTTGAGGTTCAAAGTGATG+AGG + chr1_4:20601860-20601879 None:intergenic 35.0%
ATTGAAATCCCATATGCTCA+TGG + chr1_4:20601933-20601952 None:intergenic 35.0%
ATGACAAATATGGAGACCTT+TGG - chr1_4:20601951-20601970 Msa0155350:intron 35.0%
TGACAAATATGGAGACCTTT+GGG - chr1_4:20601952-20601971 Msa0155350:intron 35.0%
!!! GATTTTGAAGTGAGTTTGGA+TGG + chr1_4:20600484-20600503 None:intergenic 35.0%
!!! GAAGGATTTTGAAGTGAGTT+TGG + chr1_4:20600488-20600507 None:intergenic 35.0%
AATATGCCATGAATGTTGAG+TGG + chr1_4:20600523-20600542 None:intergenic 35.0%
ACAAAGTTCTTGTTGAATGC+TGG - chr1_4:20600568-20600587 Msa0155350:three_prime_UTR 35.0%
TAGTACGAAATTGGTCAACA+GGG + chr1_4:20600627-20600646 None:intergenic 35.0%
TTAGTACGAAATTGGTCAAC+AGG + chr1_4:20600628-20600647 None:intergenic 35.0%
GTTGACCAATTTCGTACTAA+TGG - chr1_4:20600628-20600647 Msa0155350:CDS 35.0%
GAATGCCATTAGTACGAAAT+TGG + chr1_4:20600636-20600655 None:intergenic 35.0%
GGTCATCATACTTTCAATGA+AGG - chr1_4:20600779-20600798 Msa0155350:CDS 35.0%
CCAATGGTAAGAGTTTGATA+TGG + chr1_4:20601043-20601062 None:intergenic 35.0%
CCATATCAAACTCTTACCAT+TGG - chr1_4:20601040-20601059 Msa0155350:intron 35.0%
CAAAGCTCATGATCAATTTC+AGG - chr1_4:20601143-20601162 Msa0155350:intron 35.0%
!!! AACATTTTGGGGTGCAATTA+AGG - chr1_4:20601166-20601185 Msa0155350:intron 35.0%
AAGGATGACATAATAGCAGT+AGG - chr1_4:20601185-20601204 Msa0155350:intron 35.0%
AACATACCTTGAAATCCAGT+GGG + chr1_4:20601215-20601234 None:intergenic 35.0%
AAACATACCTTGAAATCCAG+TGG + chr1_4:20601216-20601235 None:intergenic 35.0%
ACACGTTAGAAAATGGTACA+AGG + chr1_4:20601240-20601259 None:intergenic 35.0%
! ACCACAATTTGGAGGTTTTA+CGG + chr1_4:20601302-20601321 None:intergenic 35.0%
CTAATTGAACCACAATTTGG+AGG + chr1_4:20601310-20601329 None:intergenic 35.0%
GAGCTAATTGAACCACAATT+TGG + chr1_4:20601313-20601332 None:intergenic 35.0%
TAGTCAAAATTGTGGTCAAG+GGG + chr1_4:20601553-20601572 None:intergenic 35.0%
AGTACAATGTATGTTTCAGG+GGG - chr1_4:20601763-20601782 Msa0155350:intron 35.0%
AGTATTTGTTCATTGGAGCA+GGG - chr1_4:20601786-20601805 Msa0155350:intron 35.0%
! ATTTGAGGTTCAAAGTGATG+AGG + chr1_4:20601860-20601879 None:intergenic 35.0%
ATTGAAATCCCATATGCTCA+TGG + chr1_4:20601933-20601952 None:intergenic 35.0%
ATGACAAATATGGAGACCTT+TGG - chr1_4:20601951-20601970 Msa0155350:intron 35.0%
TGACAAATATGGAGACCTTT+GGG - chr1_4:20601952-20601971 Msa0155350:intron 35.0%
AGTTTGGATGGAGTGATGAT+AGG + chr1_4:20600472-20600491 None:intergenic 40.0%
ATTGAAGCATGTGGTACTCA+TGG - chr1_4:20600895-20600914 Msa0155350:intron 40.0%
TCACAGCTCATTAGCTATTG+TGG - chr1_4:20601065-20601084 Msa0155350:intron 40.0%
ACATACCTTGAAATCCAGTG+GGG + chr1_4:20601214-20601233 None:intergenic 40.0%
! CCACAATTTGGAGGTTTTAC+GGG + chr1_4:20601301-20601320 None:intergenic 40.0%
TTTGATACTGCAGAGGTTTG+TGG + chr1_4:20601512-20601531 None:intergenic 40.0%
CTAATGCAGGGCTTATTTCA+TGG - chr1_4:20601603-20601622 Msa0155350:intron 40.0%
GAGTATTTGTTCATTGGAGC+AGG - chr1_4:20601785-20601804 Msa0155350:intron 40.0%
! TCAAAGTGATGAGGTTGATC+AGG + chr1_4:20601851-20601870 None:intergenic 40.0%
AGTTTGGATGGAGTGATGAT+AGG + chr1_4:20600472-20600491 None:intergenic 40.0%
ATTGAAGCATGTGGTACTCA+TGG - chr1_4:20600895-20600914 Msa0155350:intron 40.0%
TCACAGCTCATTAGCTATTG+TGG - chr1_4:20601065-20601084 Msa0155350:intron 40.0%
ACATACCTTGAAATCCAGTG+GGG + chr1_4:20601214-20601233 None:intergenic 40.0%
! CCACAATTTGGAGGTTTTAC+GGG + chr1_4:20601301-20601320 None:intergenic 40.0%
TTTGATACTGCAGAGGTTTG+TGG + chr1_4:20601512-20601531 None:intergenic 40.0%
CTAATGCAGGGCTTATTTCA+TGG - chr1_4:20601603-20601622 Msa0155350:intron 40.0%
GAGTATTTGTTCATTGGAGC+AGG - chr1_4:20601785-20601804 Msa0155350:intron 40.0%
! TCAAAGTGATGAGGTTGATC+AGG + chr1_4:20601851-20601870 None:intergenic 40.0%
! ATGTGTCAGACTTGGTTGGT+TGG + chr1_4:20600418-20600437 None:intergenic 45.0%
AACCAACCAAGTCTGACACA+TGG - chr1_4:20600417-20600436 Msa0155350:three_prime_UTR 45.0%
TGGATGGAGTGATGATAGGA+GGG + chr1_4:20600468-20600487 None:intergenic 45.0%
TTGGATGGAGTGATGATAGG+AGG + chr1_4:20600469-20600488 None:intergenic 45.0%
CCATGAATGTTGAGTGGTGT+TGG + chr1_4:20600517-20600536 None:intergenic 45.0%
CCAACACCACTCAACATTCA+TGG - chr1_4:20600514-20600533 Msa0155350:three_prime_UTR 45.0%
ACAGGGTCTTCATTAAGGTC+AGG + chr1_4:20600610-20600629 None:intergenic 45.0%
GGTCAACAGGGTCTTCATTA+AGG + chr1_4:20600615-20600634 None:intergenic 45.0%
CTAATGAGCTGTGACACCAA+TGG + chr1_4:20601059-20601078 None:intergenic 45.0%
CAGCTCATTAGCTATTGTGG+AGG - chr1_4:20601068-20601087 Msa0155350:intron 45.0%
ATACCTTGAAATCCAGTGGG+GGG + chr1_4:20601212-20601231 None:intergenic 45.0%
CATACCTTGAAATCCAGTGG+GGG + chr1_4:20601213-20601232 None:intergenic 45.0%
CCCGTAAAACCTCCAAATTG+TGG - chr1_4:20601298-20601317 Msa0155350:intron 45.0%
! AGTCGATTCTGCCTCAATTG+CGG + chr1_4:20601481-20601500 None:intergenic 45.0%
! GCAAGCTTTTGATACTGCAG+AGG + chr1_4:20601519-20601538 None:intergenic 45.0%
! TGGGGTATTCTTCGATGTTC+CGG - chr1_4:20601649-20601668 Msa0155350:intron 45.0%
!! CAGGGGGAGTATTTGTTCAT+TGG - chr1_4:20601779-20601798 Msa0155350:intron 45.0%
! ATGTGTCAGACTTGGTTGGT+TGG + chr1_4:20600418-20600437 None:intergenic 45.0%
AACCAACCAAGTCTGACACA+TGG - chr1_4:20600417-20600436 Msa0155350:three_prime_UTR 45.0%
TGGATGGAGTGATGATAGGA+GGG + chr1_4:20600468-20600487 None:intergenic 45.0%
TTGGATGGAGTGATGATAGG+AGG + chr1_4:20600469-20600488 None:intergenic 45.0%
CCATGAATGTTGAGTGGTGT+TGG + chr1_4:20600517-20600536 None:intergenic 45.0%
CCAACACCACTCAACATTCA+TGG - chr1_4:20600514-20600533 Msa0155350:three_prime_UTR 45.0%
ACAGGGTCTTCATTAAGGTC+AGG + chr1_4:20600610-20600629 None:intergenic 45.0%
GGTCAACAGGGTCTTCATTA+AGG + chr1_4:20600615-20600634 None:intergenic 45.0%
CTAATGAGCTGTGACACCAA+TGG + chr1_4:20601059-20601078 None:intergenic 45.0%
CAGCTCATTAGCTATTGTGG+AGG - chr1_4:20601068-20601087 Msa0155350:intron 45.0%
ATACCTTGAAATCCAGTGGG+GGG + chr1_4:20601212-20601231 None:intergenic 45.0%
CATACCTTGAAATCCAGTGG+GGG + chr1_4:20601213-20601232 None:intergenic 45.0%
CCCGTAAAACCTCCAAATTG+TGG - chr1_4:20601298-20601317 Msa0155350:intron 45.0%
! AGTCGATTCTGCCTCAATTG+CGG + chr1_4:20601481-20601500 None:intergenic 45.0%
! GCAAGCTTTTGATACTGCAG+AGG + chr1_4:20601519-20601538 None:intergenic 45.0%
! TGGGGTATTCTTCGATGTTC+CGG - chr1_4:20601649-20601668 Msa0155350:intron 45.0%
!! CAGGGGGAGTATTTGTTCAT+TGG - chr1_4:20601779-20601798 Msa0155350:intron 45.0%
ATAGCGCCATGTGTCAGACT+TGG + chr1_4:20600426-20600445 None:intergenic 50.0%
! GAGTGGTGTTGGAGAAGAGA+AGG + chr1_4:20600506-20600525 None:intergenic 50.0%
TCGTGGTTGTGTTGCAACTG+AGG - chr1_4:20601368-20601387 Msa0155350:intron 50.0%
GAAGAATACCCCAGCAGCAA+TGG + chr1_4:20601642-20601661 None:intergenic 50.0%
ATAGCGCCATGTGTCAGACT+TGG + chr1_4:20600426-20600445 None:intergenic 50.0%
! GAGTGGTGTTGGAGAAGAGA+AGG + chr1_4:20600506-20600525 None:intergenic 50.0%
TCGTGGTTGTGTTGCAACTG+AGG - chr1_4:20601368-20601387 Msa0155350:intron 50.0%
GAAGAATACCCCAGCAGCAA+TGG + chr1_4:20601642-20601661 None:intergenic 50.0%
! CGCCATGTGTCAGACTTGGT+TGG + chr1_4:20600422-20600441 None:intergenic 55.0%
AGGAGGGACAAGTGAGAGTG+AGG + chr1_4:20600452-20600471 None:intergenic 55.0%
AATACCCCAGCAGCAATGGC+TGG + chr1_4:20601638-20601657 None:intergenic 55.0%
! CGCCATGTGTCAGACTTGGT+TGG + chr1_4:20600422-20600441 None:intergenic 55.0%
AGGAGGGACAAGTGAGAGTG+AGG + chr1_4:20600452-20600471 None:intergenic 55.0%
AATACCCCAGCAGCAATGGC+TGG + chr1_4:20601638-20601657 None:intergenic 55.0%
ATAGCAGTAGGACCCCCCAC+TGG - chr1_4:20601197-20601216 Msa0155350:intron 60.0%
GGACCCCCCACTGGATTTCA+AGG - chr1_4:20601206-20601225 Msa0155350:intron 60.0%
GCTGCAGTGCAGTGCAGTTG+TGG + chr1_4:20601459-20601478 None:intergenic 60.0%
CTGCACTGCAGCCGCAATTG+AGG - chr1_4:20601467-20601486 Msa0155350:intron 60.0%
TGGTCAAGGGGCAGCTCAAG+TGG + chr1_4:20601541-20601560 None:intergenic 60.0%
TTCCCACCAGCCATTGCTGC+TGG - chr1_4:20601629-20601648 Msa0155350:intron 60.0%
TCCCACCAGCCATTGCTGCT+GGG - chr1_4:20601630-20601649 Msa0155350:intron 60.0%
ATAGCAGTAGGACCCCCCAC+TGG - chr1_4:20601197-20601216 Msa0155350:intron 60.0%
GGACCCCCCACTGGATTTCA+AGG - chr1_4:20601206-20601225 Msa0155350:intron 60.0%
GCTGCAGTGCAGTGCAGTTG+TGG + chr1_4:20601459-20601478 None:intergenic 60.0%
CTGCACTGCAGCCGCAATTG+AGG - chr1_4:20601467-20601486 Msa0155350:intron 60.0%
TGGTCAAGGGGCAGCTCAAG+TGG + chr1_4:20601541-20601560 None:intergenic 60.0%
TTCCCACCAGCCATTGCTGC+TGG - chr1_4:20601629-20601648 Msa0155350:intron 60.0%
TCCCACCAGCCATTGCTGCT+GGG - chr1_4:20601630-20601649 Msa0155350:intron 60.0%
CCCCAGCAGCAATGGCTGGT+GGG + chr1_4:20601634-20601653 None:intergenic 65.0%
CCCACCAGCCATTGCTGCTG+GGG - chr1_4:20601631-20601650 Msa0155350:intron 65.0%
ACCCCAGCAGCAATGGCTGG+TGG + chr1_4:20601635-20601654 None:intergenic 65.0%
CCCCAGCAGCAATGGCTGGT+GGG + chr1_4:20601634-20601653 None:intergenic 65.0%
CCCACCAGCCATTGCTGCTG+GGG - chr1_4:20601631-20601650 Msa0155350:intron 65.0%
ACCCCAGCAGCAATGGCTGG+TGG + chr1_4:20601635-20601654 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 20600380 20602236 20600380 ID=Msa0155350;Name=Msa0155350
chr1_4 mRNA 20600380 20602236 20600380 ID=Msa0155350-mRNA-1;Parent=Msa0155350;Name=Msa0155350-mRNA-1;_AED=0.07;_eAED=0.07;_QI=56|1|1|1|1|1|5|218|215
chr1_4 exon 20600380 20600834 20600380 ID=Msa0155350-mRNA-1:exon:7505;Parent=Msa0155350-mRNA-1
chr1_4 exon 20600946 20601004 20600946 ID=Msa0155350-mRNA-1:exon:7504;Parent=Msa0155350-mRNA-1
chr1_4 exon 20601389 20601451 20601389 ID=Msa0155350-mRNA-1:exon:7503;Parent=Msa0155350-mRNA-1
chr1_4 exon 20601801 20601864 20601801 ID=Msa0155350-mRNA-1:exon:7502;Parent=Msa0155350-mRNA-1
chr1_4 exon 20601956 20602236 20601956 ID=Msa0155350-mRNA-1:exon:7501;Parent=Msa0155350-mRNA-1
chr1_4 five_prime_UTR 20602181 20602236 20602181 ID=Msa0155350-mRNA-1:five_prime_utr;Parent=Msa0155350-mRNA-1
chr1_4 CDS 20601956 20602180 20601956 ID=Msa0155350-mRNA-1:cds;Parent=Msa0155350-mRNA-1
chr1_4 CDS 20601801 20601864 20601801 ID=Msa0155350-mRNA-1:cds;Parent=Msa0155350-mRNA-1
chr1_4 CDS 20601389 20601451 20601389 ID=Msa0155350-mRNA-1:cds;Parent=Msa0155350-mRNA-1
chr1_4 CDS 20600946 20601004 20600946 ID=Msa0155350-mRNA-1:cds;Parent=Msa0155350-mRNA-1
chr1_4 CDS 20600598 20600834 20600598 ID=Msa0155350-mRNA-1:cds;Parent=Msa0155350-mRNA-1
chr1_4 three_prime_UTR 20600380 20600597 20600380 ID=Msa0155350-mRNA-1:three_prime_utr;Parent=Msa0155350-mRNA-1
Gene Sequence

>Msa0155350

ATGGCGCTATGTTCCTCACTCTCACTTGTCCCTCCTATCATCACTCCATCCAAACTCACTTCAAAATCCTTCTCTTCTCCAACACCACTCAACATTCATGGCATATTCACTACCAAGAGTAACAAAAACTCAACAAAGTTCTTGTTGAATGCTGGTTTCAATCTTATTGAGCCTGACCTTAATGAAGACCCTGTTGACCAATTTCGTACTAATGGCATTCCACCTGAAGAATTTGAGTATGGAATATTTGATGGTCATCATACTTTCAATGAAGGTGAAGAAAAGAAAGGAACATTTTGGGGTGCAATTAAGGATGACATAATAGCAGTAGGACCCCCCACTGGATTTCAAGGGCTTATTTCATGGCTCTTCCCACCAGCCATTGCTGCTGGGGTATTCTTCGATGTTCCGGGGGAGTATTTGTTCATTGGAGCAGGGATATTTACAATTGTATTTTGCATTATTGAGATGGATAAACCTGATCAACCTCATCACTTTGAACCTCAAATATACAACATGGAAAGAGGAGCTAGAGACAAGTTGATAAATGACTATAATTCCATGAGCATATGGGATTTCAATGACAAATATGGAGACCTTTGGGATTTTACTATCAAGAAGAATAAGGATGACATAATGAAGAGATAA

Protein sequence

>Msa0155350

MALCSSLSLVPPIITPSKLTSKSFSSPTPLNIHGIFTTKSNKNSTKFLLNAGFNLIEPDLNEDPVDQFRTNGIPPEEFEYGIFDGHHTFNEGEEKKGTFWGAIKDDIIAVGPPTGFQGLISWLFPPAIAAGVFFDVPGEYLFIGAGIFTIVFCIIEMDKPDQPHHFEPQIYNMERGARDKLINDYNSMSIWDFNDKYGDLWDFTIKKNKDDIMKR*