AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0116200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116200 MtrunA17_Chr1g0212851 94.943 435 3 2 1 418 17 449 0.0 832
Msa0116200 MtrunA17_Chr8g0369371 60.256 234 81 4 5 234 2 227 6.01e-89 269
Msa0116200 MtrunA17_Chr5g0418911 37.845 362 194 8 67 416 24 366 1.48e-69 224
Msa0116200 MtrunA17_Chr8g0369381 43.333 180 81 1 239 418 1 159 4.21e-42 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116200 AT1G80480.1 75.192 391 71 3 45 418 63 444 0.0 541
Msa0116200 AT1G15730.1 69.139 418 103 4 20 418 38 448 0.0 540
Msa0116200 AT1G26520.1 36.314 369 172 7 73 416 42 372 1.42e-69 224

Find 117 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGTCAAATTTGCCTTTCT+TGG 0.203631 1_3:+35068244 None:intergenic
ATACTCCGTCCTCTTTAAAT+TGG 0.236187 1_3:+35065794 None:intergenic
GAATGAAAGATTTGTCTTTC+AGG 0.236233 1_3:-35063177 Msa0116200:intron
GTGAACTTGGATTATGTTCT+TGG 0.237961 1_3:-35065765 Msa0116200:CDS
TCTGGCTGCCACAACCTTTC+CGG 0.245017 1_3:+35062951 None:intergenic
TTGTTTGTCCTTGGCTCATC+TGG 0.268152 1_3:+35062933 None:intergenic
GCCTCATTGACCACACCTTT+TGG 0.295052 1_3:+35067973 None:intergenic
CTACGGAAGATTGTAGAAAT+TGG 0.299599 1_3:+35068794 None:intergenic
AATAGTATCCTCAGCATAAA+AGG 0.305064 1_3:+35068074 None:intergenic
TGATCGAATAATCGTAAATA+AGG 0.306250 1_3:-35067929 Msa0116200:intron
AGAAGAGTGGTGAAGGGTTT+GGG 0.309735 1_3:+35068872 None:intergenic
GAACTTGAATGCTGAGGAAT+TGG 0.310817 1_3:-35062892 Msa0116200:CDS
AATTTAAAGAGGACGGAGTA+TGG 0.326999 1_3:-35065792 Msa0116200:CDS
AAGAAGAGTGGTGAAGGGTT+TGG 0.330035 1_3:+35068871 None:intergenic
TGGCATTGGAGGCTTTGATT+TGG 0.346009 1_3:-35065745 Msa0116200:CDS
GCATAAAAGGTCTGGATTAT+CGG 0.359801 1_3:+35068087 None:intergenic
TAATACAGGTTTGGCGAATC+CGG 0.361283 1_3:-35068112 Msa0116200:intron
GTGGCAGGAATGCGGTTATC+AGG 0.367337 1_3:+35068677 None:intergenic
GTCACTACGTTCCATCAATA+AGG 0.373389 1_3:+35063241 None:intergenic
CATGGTCATGGTCATGGCTA+TGG 0.392483 1_3:+35063909 None:intergenic
TTGGATTATGTTCTTGGCAT+TGG 0.395925 1_3:-35065759 Msa0116200:CDS
TTTGGTGAGATTGATATTGA+TGG 0.412472 1_3:-35068383 Msa0116200:CDS
AGATGAAGGTATTCTAGAAA+TGG 0.416613 1_3:+35062712 None:intergenic
AGAGGCGAGTGAGTTTGTTA+TGG 0.423350 1_3:+35068765 None:intergenic
TTCACTATTCATATAGTAAG+TGG 0.425610 1_3:+35062744 None:intergenic
ATACCTTCATCTTTCAATGA+AGG 0.428015 1_3:-35062701 Msa0116200:three_prime_UTR
GAAATTGGAGATGAGTTTAA+CGG 0.433464 1_3:+35068809 None:intergenic
GTGGCTTGGTACCTTATTGA+TGG 0.439152 1_3:-35063252 Msa0116200:CDS
AAATGATGATGATACCTTGC+CGG 0.444794 1_3:+35068631 None:intergenic
GGAGTTCATGACATATTTCA+AGG 0.445771 1_3:-35062978 Msa0116200:CDS
AACGTAGTGACGACATTTAT+AGG 0.447587 1_3:-35063229 Msa0116200:CDS
TATCCTCAGCATAAAAGGTC+TGG 0.451814 1_3:+35068079 None:intergenic
CCGTCCTCTTTAAATTGGCC+AGG 0.458430 1_3:+35065799 None:intergenic
TGTGGTCATGTGAATCTTCA+TGG 0.466615 1_3:+35063849 None:intergenic
GAATGCTGAGGAATTGGAAA+AGG 0.468936 1_3:-35062886 Msa0116200:CDS
GATCATGATGATGGTGTTCA+TGG 0.472248 1_3:+35063885 None:intergenic
AAAGGTCTTCTATCTGTTCA+AGG 0.474112 1_3:-35063203 Msa0116200:CDS
TTGTCTTTGCTGTACTGTGA+GGG 0.479297 1_3:-35068303 Msa0116200:CDS
CATATTGTTATTGAGACTAC+TGG 0.484719 1_3:-35068224 Msa0116200:intron
CAGTAGTCTCAATAACAATA+TGG 0.488237 1_3:+35068225 None:intergenic
ATGGTCATGGTCATGGCTAT+GGG 0.492078 1_3:+35063910 None:intergenic
CTATAGGCTAACATGTGGCT+TGG 0.493336 1_3:-35063266 Msa0116200:intron
GATTATGTTCTTGGCATTGG+AGG 0.493460 1_3:-35065756 Msa0116200:CDS
GAAACACGTGTGAAATCCAT+TGG 0.495998 1_3:+35062595 None:intergenic
GAATTAGTCACGTCCAAGAA+AGG 0.497720 1_3:-35068257 Msa0116200:CDS
ACCGAGAAAACCGGTGATGA+TGG 0.498944 1_3:+35068655 None:intergenic
GAACCTTCATTGAAAGATGA+AGG 0.501399 1_3:+35062698 None:intergenic
TTTGGTATTTCAGTTCATGA+TGG 0.501956 1_3:+35062621 None:intergenic
TTCTTAGTATCACAGCAAAC+AGG 0.504205 1_3:+35062854 None:intergenic
GGAGTATGGAAAGGTGAACT+TGG 0.507746 1_3:-35065778 Msa0116200:CDS
AATTGCGGTTATTGAAAATG+AGG 0.508358 1_3:-35068494 Msa0116200:intron
AATGCTGAGGAATTGGAAAA+GGG 0.512342 1_3:-35062885 Msa0116200:CDS
GTTGGATGGTGTTGTCACTT+TGG 0.513457 1_3:-35068037 Msa0116200:CDS
TCACTATTCATATAGTAAGT+GGG 0.516115 1_3:+35062745 None:intergenic
GTTTGTTATGGTTGTTACTA+CGG 0.516237 1_3:+35068777 None:intergenic
TTTAATGAAGTCAAGTTGGA+TGG 0.519334 1_3:-35068051 Msa0116200:CDS
TCGGAGTCGTCGGTGGTTTG+AGG 0.520426 1_3:+35068722 None:intergenic
CATGGTCATGGTCATGGTCA+TGG 0.522744 1_3:+35063903 None:intergenic
TGACATATTTCAAGGTTCAC+CGG 0.523489 1_3:-35062970 Msa0116200:CDS
GGAGACGTCGTCGGAGTCGT+CGG 0.528650 1_3:+35068712 None:intergenic
CTTGCCGGAACCGAGAAAAC+CGG 0.529351 1_3:+35068646 None:intergenic
GGTGTTCATGGTCATGGTCA+TGG 0.532202 1_3:+35063897 None:intergenic
AATCTTCATGGTGATGGTGG+TGG 0.536012 1_3:+35063861 None:intergenic
TATTGATGGTTCTTTAGTTG+CGG 0.539178 1_3:-35068369 Msa0116200:CDS
CTTGACGAGGTTAAGCCAAA+AGG 0.540274 1_3:-35067988 Msa0116200:CDS
ATTCCTGCCACCATCATCAC+CGG 0.540312 1_3:-35068665 Msa0116200:CDS
AAACCGGTGATGATGGTGGC+AGG 0.542945 1_3:+35068662 None:intergenic
CATATCCTCACAGCGGAGCA+TGG 0.544248 1_3:-35068523 Msa0116200:CDS
ATGCTCACTGATGAAACGCC+AGG 0.549059 1_3:+35063475 None:intergenic
TTGGTTGATGCGAAACATGC+TGG 0.549484 1_3:-35068018 Msa0116200:CDS
GCGGTTATCAGGTGGAATAA+CGG 0.551353 1_3:+35068688 None:intergenic
CATGATCATAGTCACGATCC+TGG 0.552341 1_3:-35063493 Msa0116200:CDS
GGTGGTGGTGATCATGATGA+TGG 0.553558 1_3:+35063876 None:intergenic
GAGAGCGCTGTTAATGATGA+AGG 0.554591 1_3:-35063953 Msa0116200:CDS
ATTCCAGAAAATAAACAGCC+TGG 0.556534 1_3:-35065817 Msa0116200:intron
AAGGTTCACCGGAAAGGTTG+TGG 0.556980 1_3:-35062959 Msa0116200:CDS
GACGACATTTATAGGATGAA+AGG 0.558665 1_3:-35063221 Msa0116200:CDS
TATTTCAAGGTTCACCGGAA+AGG 0.560823 1_3:-35062965 Msa0116200:CDS
CATGTGAATCTTCATGGTGA+TGG 0.566710 1_3:+35063855 None:intergenic
GATATTATGTTGTTGAACAA+TGG 0.568349 1_3:-35068326 Msa0116200:CDS
AGCAAGTACTAACCTTCTCA+AGG 0.584526 1_3:+35063431 None:intergenic
AAAGAGGACGGAGTATGGAA+AGG 0.586024 1_3:-35065787 Msa0116200:CDS
GTGAATCTTCATGGTGATGG+TGG 0.586196 1_3:+35063858 None:intergenic
TTGGAGGCTTTGATTTGGAG+AGG 0.586416 1_3:-35065740 Msa0116200:intron
GGTGGAAAGAAGAGTGGTGA+AGG 0.586615 1_3:+35068865 None:intergenic
TGCTGGTTTGCATCTTGACG+AGG 0.587527 1_3:-35068001 Msa0116200:CDS
GGTTTGAGGCGGAGATGAGG+TGG 0.587638 1_3:+35068736 None:intergenic
GGTGTTGGTGGAAAGAAGAG+TGG 0.592017 1_3:+35068859 None:intergenic
CAACATAATATCTTCAGCAC+CGG 0.592357 1_3:+35068337 None:intergenic
ACAGCCTGGCCAATTTAAAG+AGG 0.594420 1_3:-35065803 Msa0116200:CDS
GCCAAAAGGTGTGGTCAATG+AGG 0.599909 1_3:-35067974 Msa0116200:CDS
AAATTTAGGTACCATGCTTG+TGG 0.601243 1_3:+35063831 None:intergenic
GTTGTCTTTGCTGTACTGTG+AGG 0.604741 1_3:-35068304 Msa0116200:CDS
GACGTCGTCGGAGTCGTCGG+TGG 0.608943 1_3:+35068715 None:intergenic
GGTGGTTTGAGGCGGAGATG+AGG 0.610253 1_3:+35068733 None:intergenic
GATGATGGTGTTCATGGTCA+TGG 0.610283 1_3:+35063891 None:intergenic
AGGGAAGAACTTGAATGCTG+AGG 0.611753 1_3:-35062898 Msa0116200:CDS
GTGGAAAGAAGAGTGGTGAA+GGG 0.612512 1_3:+35068866 None:intergenic
TGTCTTTGCTGTACTGTGAG+GGG 0.617492 1_3:-35068302 Msa0116200:CDS
AAGGTCTGGATTATCGGCGC+CGG 0.617720 1_3:+35068093 None:intergenic
GCAGGAATGCGGTTATCAGG+TGG 0.618572 1_3:+35068680 None:intergenic
CCTGGCCAATTTAAAGAGGA+CGG 0.624870 1_3:-35065799 Msa0116200:CDS
TCAGTGAGCATAGTTTGCGA+AGG 0.626638 1_3:-35063463 Msa0116200:CDS
GAGTCGTCGGTGGTTTGAGG+CGG 0.627298 1_3:+35068725 None:intergenic
AGGAAACTTAGACCTTGAGA+AGG 0.627667 1_3:-35063443 Msa0116200:intron
GATTCACATGACCACAAGCA+TGG 0.628690 1_3:-35063842 Msa0116200:intron
TGTGGCAGCCAGATGAGCCA+AGG 0.631087 1_3:-35062941 Msa0116200:CDS
GAGATGAGGTGGATGATGAG+AGG 0.634300 1_3:+35068747 None:intergenic
CGAGGTTAAGCCAAAAGGTG+TGG 0.651456 1_3:-35067983 Msa0116200:CDS
GAGAAAACCGGTGATGATGG+TGG 0.657464 1_3:+35068658 None:intergenic
ATGCTGAGGAATTGGAAAAG+GGG 0.668894 1_3:-35062884 Msa0116200:CDS
GTTATCAGGTGGAATAACGG+TGG 0.683146 1_3:+35068691 None:intergenic
TGATGATGGTGGCAGGAATG+CGG 0.686059 1_3:+35068669 None:intergenic
AATAACGGTGGAGACGTCGT+CGG 0.694029 1_3:+35068703 None:intergenic
GGAGCATGGAAAACGAATTG+CGG 0.698183 1_3:-35068509 Msa0116200:CDS
ATTCAGATATCATTCTAACA+AGG 0.703033 1_3:+35068276 None:intergenic
TCTGAATCATATCCTCACAG+CGG 0.790712 1_3:-35068530 Msa0116200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATTTTTTTAATTAA+AGG - chr1_3:35066370-35066389 Msa0116200:intron 0.0%
!! TTAAATTAATTAAATTAAAT+AGG - chr1_3:35066853-35066872 Msa0116200:intron 0.0%
!! ATATATATATATATAAAAAT+AGG + chr1_3:35067778-35067797 None:intergenic 0.0%
!!! AACTTATTTTTATTTAAGAA+TGG - chr1_3:35064106-35064125 Msa0116200:intron 10.0%
!!! ATCTTAAGTTTTTTTTTTTT+TGG - chr1_3:35064401-35064420 Msa0116200:intron 10.0%
!!! AAGTAAAATAAGATATTTTT+TGG + chr1_3:35064755-35064774 None:intergenic 10.0%
!! TTATTATAAAATAATATGAG+TGG + chr1_3:35066425-35066444 None:intergenic 10.0%
!!! ATAAAATTTAGGTTAAAATT+AGG - chr1_3:35067092-35067111 Msa0116200:intron 10.0%
!!! TAAAATTTAGGTTAAAATTA+GGG - chr1_3:35067093-35067112 Msa0116200:intron 10.0%
!!! ATCTAATTTTATTATTTGAA+TGG - chr1_3:35067807-35067826 Msa0116200:intron 10.0%
!! ACTAATTTATACTTATTACA+GGG - chr1_3:35063586-35063605 Msa0116200:intron 15.0%
!!! TTTTTCATTGATGAAAAATA+TGG - chr1_3:35063621-35063640 Msa0116200:intron 15.0%
!! AAACTTAAGATTTAAATGTT+GGG + chr1_3:35064392-35064411 None:intergenic 15.0%
!! AAAACTTAAGATTTAAATGT+TGG + chr1_3:35064393-35064412 None:intergenic 15.0%
!! TTTCAGTTAAAATAAGTTTA+TGG + chr1_3:35064825-35064844 None:intergenic 15.0%
!!! ATATATTTTATGAAACTGTA+TGG - chr1_3:35065224-35065243 Msa0116200:intron 15.0%
!!! TTTTTCTTAAACAATTGAAA+AGG + chr1_3:35065793-35065812 None:intergenic 15.0%
!!! TTTTCAATTGTTTAAGAAAA+AGG - chr1_3:35065792-35065811 Msa0116200:CDS 15.0%
!!! ATCAAAATCTTATTTTCAAA+CGG + chr1_3:35066825-35066844 None:intergenic 15.0%
!! TTAAATAGGTTTAATTAAAC+AGG - chr1_3:35066867-35066886 Msa0116200:intron 15.0%
!! TAAATAGGTTTAATTAAACA+GGG - chr1_3:35066868-35066887 Msa0116200:intron 15.0%
!!! TAGAATTTAGGTTAAAATTA+GGG - chr1_3:35066912-35066931 Msa0116200:intron 15.0%
!! CTTATTTATTAAAGTTAACT+TGG + chr1_3:35066951-35066970 None:intergenic 15.0%
!!! ATCAAATTCTTATTTTCAAA+CGG + chr1_3:35066996-35067015 None:intergenic 15.0%
!! TAAAAGTAAGCATAAAATTT+AGG - chr1_3:35067081-35067100 Msa0116200:intron 15.0%
!!! AATAAGTTTAGGTTAAAATT+AGG - chr1_3:35067260-35067279 Msa0116200:intron 15.0%
!!! ATAAGTTTAGGTTAAAATTA+GGG - chr1_3:35067261-35067280 Msa0116200:intron 15.0%
!!! TAATTTTATTATTTGAATGG+TGG - chr1_3:35067810-35067829 Msa0116200:intron 15.0%
!!! ATTAATTTGTCTTATTCATT+TGG - chr1_3:35068100-35068119 Msa0116200:CDS 15.0%
!! AGCATTAACATAAAAAATAA+AGG + chr1_3:35068141-35068160 None:intergenic 15.0%
!!! ATGAATAGTTCTTTTGATTT+TGG + chr1_3:35062649-35062668 None:intergenic 20.0%
!! TTGAAATGATTGAATTGAAA+TGG + chr1_3:35062894-35062913 None:intergenic 20.0%
!! TAAAATTGAACTGCTTATTA+GGG - chr1_3:35063316-35063335 Msa0116200:intron 20.0%
!!! TATTTTTAATGAAGTCAAGT+TGG - chr1_3:35063429-35063448 Msa0116200:intron 20.0%
!! GACTAATTTATACTTATTAC+AGG - chr1_3:35063585-35063604 Msa0116200:intron 20.0%
!! TAACTAAATAATGTACAGTA+TGG - chr1_3:35063687-35063706 Msa0116200:intron 20.0%
!! ATAATTCAAAATTCGCTATA+TGG + chr1_3:35063731-35063750 None:intergenic 20.0%
!! AAAAATTCTACATCAAGTTA+TGG - chr1_3:35063754-35063773 Msa0116200:intron 20.0%
!! TGTATGAAAGTTTCAAATAA+CGG + chr1_3:35064247-35064266 None:intergenic 20.0%
!! TAAAAGATTATAGATGTTCA+TGG + chr1_3:35064780-35064799 None:intergenic 20.0%
!!! TGAACATCTATAATCTTTTA+AGG - chr1_3:35064780-35064799 Msa0116200:intron 20.0%
!!! TAAATCTTAAGGGAATTTTT+TGG - chr1_3:35064961-35064980 Msa0116200:intron 20.0%
!!! GAATTTTCAATTTCATTATG+AGG - chr1_3:35064983-35065002 Msa0116200:intron 20.0%
!! TAAAAGCTTATAGATGTTAA+TGG + chr1_3:35065385-35065404 None:intergenic 20.0%
!!! TTAACATCTATAAGCTTTTA+AGG - chr1_3:35065385-35065404 Msa0116200:intron 20.0%
!!! AGCCATAAATTTATTTTAAC+TGG - chr1_3:35065425-35065444 Msa0116200:intron 20.0%
!!! GCCATAAATTTATTTTAACT+GGG - chr1_3:35065426-35065445 Msa0116200:intron 20.0%
!! TCCCAGTTAAAATAAATTTA+TGG + chr1_3:35065430-35065449 None:intergenic 20.0%
!!! CAAAAGTTCTAAAAGTTATA+TGG + chr1_3:35065955-35065974 None:intergenic 20.0%
!!! CATATAACTTTTAGAACTTT+TGG - chr1_3:35065953-35065972 Msa0116200:intron 20.0%
!! TATAAAATAATATGAGTGGA+TGG + chr1_3:35066421-35066440 None:intergenic 20.0%
!! ATATATACTACTAAATCTTG+AGG + chr1_3:35066615-35066634 None:intergenic 20.0%
!! CTTATTTATTAAAGTTAACC+CGG + chr1_3:35066787-35066806 None:intergenic 20.0%
!! AAATAGGTTTAATTAAACAG+GGG - chr1_3:35066869-35066888 Msa0116200:intron 20.0%
!!! GTAGAATTTAGGTTAAAATT+AGG - chr1_3:35066911-35066930 Msa0116200:intron 20.0%
!! TTAAATAGGTTTAATCAAAC+AGG - chr1_3:35067029-35067048 Msa0116200:intron 20.0%
!! TAAATAGGTTTAATCAAACA+GGG - chr1_3:35067030-35067049 Msa0116200:intron 20.0%
!! ATAATAATAAGAGAAAGAGT+AGG - chr1_3:35067180-35067199 Msa0116200:intron 20.0%
!! TAAATCTATGCAATAAGTTT+AGG - chr1_3:35067249-35067268 Msa0116200:intron 20.0%
!! TTATATATAAAAGTTAACCC+GGG + chr1_3:35067299-35067318 None:intergenic 20.0%
!! CTTATATATAAAAGTTAACC+CGG + chr1_3:35067300-35067319 None:intergenic 20.0%
!! TGACAAATCTTATCAAAAAT+AGG + chr1_3:35067743-35067762 None:intergenic 20.0%
!! TTTCATAAGGACAAATTATA+AGG - chr1_3:35067877-35067896 Msa0116200:intron 20.0%
!!! AACTAACATACTTTTTCTAT+AGG - chr1_3:35068202-35068221 Msa0116200:intron 20.0%
!! TGAAAACAACAACAATAAAT+AGG + chr1_3:35068354-35068373 None:intergenic 20.0%
!!! ACAAACAAAATTGTTTTCAT+AGG - chr1_3:35068566-35068585 Msa0116200:intron 20.0%
!!! CAAACAAAATTGTTTTCATA+GGG - chr1_3:35068567-35068586 Msa0116200:intron 20.0%
!! TCAAAAAGAATAAAGGATTA+AGG + chr1_3:35068670-35068689 None:intergenic 20.0%
!! TGAACAATCAAAAAGAATAA+AGG + chr1_3:35068677-35068696 None:intergenic 20.0%
! TGCATATGATTATTGTAGTT+TGG - chr1_3:35063083-35063102 Msa0116200:intron 25.0%
! GATATTATGTTGTTGAACAA+TGG - chr1_3:35063158-35063177 Msa0116200:intron 25.0%
! ATTCAGATATCATTCTAACA+AGG + chr1_3:35063211-35063230 None:intergenic 25.0%
! GTAAAATTGAACTGCTTATT+AGG - chr1_3:35063315-35063334 Msa0116200:intron 25.0%
! TTGACTGTTTGTATTAATAC+AGG - chr1_3:35063358-35063377 Msa0116200:intron 25.0%
! TGTTTGTATTAATACAGGTT+TGG - chr1_3:35063363-35063382 Msa0116200:intron 25.0%
! TGATCGAATAATCGTAAATA+AGG - chr1_3:35063555-35063574 Msa0116200:intron 25.0%
! AATAATGTACAGTATGGTTA+TGG - chr1_3:35063693-35063712 Msa0116200:intron 25.0%
! ATCTAGTACAATCAAAATGT+TGG - chr1_3:35063907-35063926 Msa0116200:CDS 25.0%
! TCTAGTACAATCAAAATGTT+GGG - chr1_3:35063908-35063927 Msa0116200:CDS 25.0%
!!! TTTAAGAATGGCTTTTAGTT+TGG - chr1_3:35064118-35064137 Msa0116200:intron 25.0%
!!! TTAAGAATGGCTTTTAGTTT+GGG - chr1_3:35064119-35064138 Msa0116200:intron 25.0%
!! TTAGTTTGGGTTATAAAACA+TGG - chr1_3:35064132-35064151 Msa0116200:intron 25.0%
! GAAAATAGTGTATCATTCTT+AGG - chr1_3:35064163-35064182 Msa0116200:intron 25.0%
!! GAAAATGACAGTATTGTTTT+GGG - chr1_3:35064327-35064346 Msa0116200:intron 25.0%
!!! TATTGTTTTGGGATTTACAA+TGG - chr1_3:35064338-35064357 Msa0116200:intron 25.0%
! GAATTTCCTATCTAATTATG+AGG - chr1_3:35064423-35064442 Msa0116200:intron 25.0%
! AAATTCTCAAGAAATGCTTA+TGG - chr1_3:35064636-35064655 Msa0116200:intron 25.0%
! ACAGTGAAGATTTAAATGTT+GGG + chr1_3:35064884-35064903 None:intergenic 25.0%
! AACAGTGAAGATTTAAATGT+TGG + chr1_3:35064885-35064904 None:intergenic 25.0%
!! CATTTAAATCTTCACTGTTT+TGG - chr1_3:35064886-35064905 Msa0116200:intron 25.0%
! TCCCTTAAGATTTAAATGTT+GGG + chr1_3:35064955-35064974 None:intergenic 25.0%
! TTCCCTTAAGATTTAAATGT+TGG + chr1_3:35064956-35064975 None:intergenic 25.0%
! TATTGAACTGAAATATGTAG+CGG - chr1_3:35065162-35065181 Msa0116200:intron 25.0%
! AGTTAGACATTAATACAAAG+TGG - chr1_3:35065460-35065479 Msa0116200:intron 25.0%
! TCTTAAACAATTGAAAAGGA+AGG + chr1_3:35065789-35065808 None:intergenic 25.0%
! AATGTAAGTTTACTTCTTCT+CGG - chr1_3:35065823-35065842 Msa0116200:intron 25.0%
!!! ATGAGAATGATTTTAGCATA+TGG + chr1_3:35065926-35065945 None:intergenic 25.0%
!!! AGTTCTAAAAGTTATATGGT+AGG + chr1_3:35065951-35065970 None:intergenic 25.0%
! ACTCAACAATTAGATACATT+AGG + chr1_3:35065991-35066010 None:intergenic 25.0%
! ATATGGAAGGTAATATTTGA+CGG - chr1_3:35066067-35066086 Msa0116200:intron 25.0%
! ATATTAAGAATCATAGACGT+TGG - chr1_3:35066146-35066165 Msa0116200:intron 25.0%
! TGTCATGGAAAATTATGTTA+TGG + chr1_3:35066179-35066198 None:intergenic 25.0%
! TAACATATGATGTTACGTTA+CGG + chr1_3:35066214-35066233 None:intergenic 25.0%
! AACATCATATGTTAAGTACA+AGG - chr1_3:35066220-35066239 Msa0116200:intron 25.0%
! GTTCTTGAATGTATGATTTA+GGG + chr1_3:35066544-35066563 None:intergenic 25.0%
! TGTTCTTGAATGTATGATTT+AGG + chr1_3:35066545-35066564 None:intergenic 25.0%
! AAATAGGAAGAAACTGTTAT+AGG - chr1_3:35066680-35066699 Msa0116200:intron 25.0%
!!! GCTACTTTGTTTTTACTAAA+CGG + chr1_3:35066713-35066732 None:intergenic 25.0%
! TAAAAGTAAGCGTAGAATTT+AGG - chr1_3:35066900-35066919 Msa0116200:intron 25.0%
! AAATAGGTTTAATCAAACAG+GGG - chr1_3:35067031-35067050 Msa0116200:intron 25.0%
! TAAACCAGAAAATAAGCATT+AGG - chr1_3:35067216-35067235 Msa0116200:intron 25.0%
! AAACCAGAAAATAAGCATTA+GGG - chr1_3:35067217-35067236 Msa0116200:intron 25.0%
! TGGGTATTTAGATATTTCTT+CGG - chr1_3:35067430-35067449 Msa0116200:intron 25.0%
!! ATGTCTTCTTGATCTTTTTA+AGG - chr1_3:35067505-35067524 Msa0116200:intron 25.0%
! AAACAAGAAAGGATTGAATT+GGG + chr1_3:35067860-35067879 None:intergenic 25.0%
!!! AAAACAATTTTGTTTGTCCT+TGG + chr1_3:35068563-35068582 None:intergenic 25.0%
! TCACTATTCATATAGTAAGT+GGG + chr1_3:35068742-35068761 None:intergenic 25.0%
! TTCACTATTCATATAGTAAG+TGG + chr1_3:35068743-35068762 None:intergenic 25.0%
!!! AGTTCTTTTGATTTTGGTGT+TGG + chr1_3:35062643-35062662 None:intergenic 30.0%
GAAATTGGAGATGAGTTTAA+CGG + chr1_3:35062678-35062697 None:intergenic 30.0%
!! GTTTGTTATGGTTGTTACTA+CGG + chr1_3:35062710-35062729 None:intergenic 30.0%
AATTGCGGTTATTGAAAATG+AGG - chr1_3:35062990-35063009 Msa0116200:intron 30.0%
TTTGGTGAGATTGATATTGA+TGG - chr1_3:35063101-35063120 Msa0116200:intron 30.0%
! TATTGATGGTTCTTTAGTTG+CGG - chr1_3:35063115-35063134 Msa0116200:intron 30.0%
CAGTAGTCTCAATAACAATA+TGG + chr1_3:35063262-35063281 None:intergenic 30.0%
! CATATTGTTATTGAGACTAC+TGG - chr1_3:35063260-35063279 Msa0116200:CDS 30.0%
AATAGTATCCTCAGCATAAA+AGG + chr1_3:35063413-35063432 None:intergenic 30.0%
!! TTTAATGAAGTCAAGTTGGA+TGG - chr1_3:35063433-35063452 Msa0116200:intron 30.0%
TTTATACTTATTACAGGGTG+TGG - chr1_3:35063591-35063610 Msa0116200:intron 30.0%
! AATATGGATTGTCGAGAAAA+TGG - chr1_3:35063637-35063656 Msa0116200:intron 30.0%
! ATATGGATTGTCGAGAAAAT+GGG - chr1_3:35063638-35063657 Msa0116200:intron 30.0%
TTCAAAATTCGCTATATGGA+AGG + chr1_3:35063727-35063746 None:intergenic 30.0%
! GGAAAATGACAGTATTGTTT+TGG - chr1_3:35064326-35064345 Msa0116200:intron 30.0%
GATTTAAATGTTGGGCTTTA+TGG + chr1_3:35064384-35064403 None:intergenic 30.0%
TGTGCAAGATATAGATTCTA+TGG - chr1_3:35064600-35064619 Msa0116200:intron 30.0%
AAAAAAAACATCTCGTGAAG+TGG - chr1_3:35064714-35064733 Msa0116200:intron 30.0%
ATTTAAATGTTGGGGATTTG+AGG + chr1_3:35064875-35064894 None:intergenic 30.0%
CAGTGAAGATTTAAATGTTG+GGG + chr1_3:35064883-35064902 None:intergenic 30.0%
ATTTAAATGTTGGGGCTTTA+AGG + chr1_3:35064946-35064965 None:intergenic 30.0%
CCCTTAAGATTTAAATGTTG+GGG + chr1_3:35064954-35064973 None:intergenic 30.0%
CCCCAACATTTAAATCTTAA+GGG - chr1_3:35064951-35064970 Msa0116200:intron 30.0%
ATTGAACTGAAATATGTAGC+GGG - chr1_3:35065163-35065182 Msa0116200:intron 30.0%
GAATTCTCAAGAAACACTTA+TGG - chr1_3:35065250-35065269 Msa0116200:intron 30.0%
GGAAGGAAACAAGAAAAAAA+AGG + chr1_3:35065772-35065791 None:intergenic 30.0%
AATAACTCGAGTATATGTAC+AGG + chr1_3:35065887-35065906 None:intergenic 30.0%
AGGTAATATTTGACGGTAAT+AGG - chr1_3:35066074-35066093 Msa0116200:intron 30.0%
AAGCTAGGTACTAATGAAAA+GGG - chr1_3:35066246-35066265 Msa0116200:intron 30.0%
ATATGCATATGAGTCCTATA+GGG + chr1_3:35066301-35066320 None:intergenic 30.0%
AATATGCATATGAGTCCTAT+AGG + chr1_3:35066302-35066321 None:intergenic 30.0%
TTTAGTATAAGTGAACCAAC+TGG + chr1_3:35066352-35066371 None:intergenic 30.0%
AAGAAAAAAGAGAACATGAG+TGG + chr1_3:35066397-35066416 None:intergenic 30.0%
CAACAACATTTGGGAAATTA+GGG - chr1_3:35066506-35066525 Msa0116200:intron 30.0%
AACAACATTTGGGAAATTAG+GGG - chr1_3:35066507-35066526 Msa0116200:intron 30.0%
GTTTATCTTGCAAACAAAGT+AGG - chr1_3:35066645-35066664 Msa0116200:intron 30.0%
AAAATAGGAGCAACGATTAT+AGG - chr1_3:35066745-35066764 Msa0116200:intron 30.0%
AATAGGTTTAATCAAACAGG+GGG - chr1_3:35067032-35067051 Msa0116200:intron 30.0%
!! TAACCCTAATGCTTATTTTC+TGG + chr1_3:35067223-35067242 None:intergenic 30.0%
TTAGGGCTAAAATATTTACC+CGG - chr1_3:35067278-35067297 Msa0116200:intron 30.0%
ATGTTTAGTCATAACCTCAT+GGG - chr1_3:35067411-35067430 Msa0116200:intron 30.0%
GAAATATCTAAATACCCATG+AGG + chr1_3:35067428-35067447 None:intergenic 30.0%
TCAACACACAAGACAAATTT+AGG + chr1_3:35067670-35067689 None:intergenic 30.0%
AGCAAATAGGTAAAAACTGT+TGG + chr1_3:35067836-35067855 None:intergenic 30.0%
GAAACAAGAAAGGATTGAAT+TGG + chr1_3:35067861-35067880 None:intergenic 30.0%
! CAATCCTTTCTTGTTTCATA+AGG - chr1_3:35067864-35067883 Msa0116200:intron 30.0%
TTGTCCTTATGAAACAAGAA+AGG + chr1_3:35067871-35067890 None:intergenic 30.0%
!! TGTAGTTTTGCTATGAAGTA+AGG - chr1_3:35067932-35067951 Msa0116200:CDS 30.0%
!! GTAGTTTTGCTATGAAGTAA+GGG - chr1_3:35067933-35067952 Msa0116200:CDS 30.0%
TCTTATTCATTTGGATGCTT+GGG - chr1_3:35068109-35068128 Msa0116200:intron 30.0%
! TTTTTCTATAGGCTAACATG+TGG - chr1_3:35068213-35068232 Msa0116200:intron 30.0%
GAATGAAAGATTTGTCTTTC+AGG - chr1_3:35068307-35068326 Msa0116200:CDS 30.0%
AGAAAAAAGCCATGCTTTAT+TGG + chr1_3:35068479-35068498 None:intergenic 30.0%
!! AGATGAAGGTATTCTAGAAA+TGG + chr1_3:35068775-35068794 None:intergenic 30.0%
ATACCTTCATCTTTCAATGA+AGG - chr1_3:35068783-35068802 Msa0116200:CDS 30.0%
! TTTATGCAGTCACGATTTTA+GGG + chr1_3:35068820-35068839 None:intergenic 30.0%
! ATTTATGCAGTCACGATTTT+AGG + chr1_3:35068821-35068840 None:intergenic 30.0%
TTTGGTATTTCAGTTCATGA+TGG + chr1_3:35068866-35068885 None:intergenic 30.0%
CTGAAATACCAAAAATCCAA+TGG - chr1_3:35068873-35068892 Msa0116200:CDS 30.0%
! TGTGAAATCCATTGGATTTT+TGG + chr1_3:35068884-35068903 None:intergenic 30.0%
!!! TCTTTTGATTTTGGTGTTGG+TGG + chr1_3:35062640-35062659 None:intergenic 35.0%
CTACGGAAGATTGTAGAAAT+TGG + chr1_3:35062693-35062712 None:intergenic 35.0%
! AAATGATGATGATACCTTGC+CGG + chr1_3:35062856-35062875 None:intergenic 35.0%
TTCTTTAGTTGCGGCAAAAA+CGG - chr1_3:35063124-35063143 Msa0116200:intron 35.0%
CAACATAATATCTTCAGCAC+CGG + chr1_3:35063150-35063169 None:intergenic 35.0%
ATGGTCAAATTTGCCTTTCT+TGG + chr1_3:35063243-35063262 None:intergenic 35.0%
GCATAAAAGGTCTGGATTAT+CGG + chr1_3:35063400-35063419 None:intergenic 35.0%
! AATACTTTCTTTGTGCCGTT+TGG - chr1_3:35063786-35063805 Msa0116200:intron 35.0%
TTGCGAGAAGTTAATCCAAA+CGG + chr1_3:35063804-35063823 None:intergenic 35.0%
TAACTTCTCGCAAATCACTT+CGG - chr1_3:35063811-35063830 Msa0116200:intron 35.0%
!! ACTTCGGTGTTGTTAAATAG+CGG - chr1_3:35063827-35063846 Msa0116200:intron 35.0%
TTGTACTAGATAGCATATCG+CGG + chr1_3:35063898-35063917 None:intergenic 35.0%
TTGCGAATAGCAGAAAACAA+CGG + chr1_3:35063988-35064007 None:intergenic 35.0%
TGACAACACTGAAACACTTA+TGG - chr1_3:35064009-35064028 Msa0116200:intron 35.0%
! TATCCCGTTATGGAATTTTG+GGG + chr1_3:35064215-35064234 None:intergenic 35.0%
! CTATCCCGTTATGGAATTTT+GGG + chr1_3:35064216-35064235 None:intergenic 35.0%
! TAAATGTTGGGCTTTATGGT+TGG + chr1_3:35064380-35064399 None:intergenic 35.0%
GACTACACTATATTGCAGTA+TGG - chr1_3:35064490-35064509 Msa0116200:intron 35.0%
ATAGATTCTATGGAACTGTC+TGG - chr1_3:35064610-35064629 Msa0116200:intron 35.0%
AGTTTATGGCTATTACTTGC+AGG + chr1_3:35064811-35064830 None:intergenic 35.0%
GCCCCAACATTTAAATCTTA+AGG - chr1_3:35064950-35064969 Msa0116200:intron 35.0%
ATTAAATGCGCAGAAGAACT+AGG + chr1_3:35065132-35065151 None:intergenic 35.0%
ATTCCAGAAAATAAACAGCC+TGG - chr1_3:35065667-35065686 Msa0116200:intron 35.0%
ATACTCCGTCCTCTTTAAAT+TGG + chr1_3:35065693-35065712 None:intergenic 35.0%
AATTTAAAGAGGACGGAGTA+TGG - chr1_3:35065692-35065711 Msa0116200:intron 35.0%
GTGAACTTGGATTATGTTCT+TGG - chr1_3:35065719-35065738 Msa0116200:intron 35.0%
TTGGATTATGTTCTTGGCAT+TGG - chr1_3:35065725-35065744 Msa0116200:intron 35.0%
GAAGCTAGGTACTAATGAAA+AGG - chr1_3:35066245-35066264 Msa0116200:intron 35.0%
AGCTAGGTACTAATGAAAAG+GGG - chr1_3:35066247-35066266 Msa0116200:intron 35.0%
AGGGGTCCTATATATTTCAT+GGG + chr1_3:35066282-35066301 None:intergenic 35.0%
TAGGGGTCCTATATATTTCA+TGG + chr1_3:35066283-35066302 None:intergenic 35.0%
GAAATATATAGGACCCCTAT+AGG - chr1_3:35066284-35066303 Msa0116200:intron 35.0%
TATGCATATGAGTCCTATAG+GGG + chr1_3:35066300-35066319 None:intergenic 35.0%
!! AAATGTTGTTGGCTTCTACT+TGG + chr1_3:35066497-35066516 None:intergenic 35.0%
AAGTAGAAGCCAACAACATT+TGG - chr1_3:35066496-35066515 Msa0116200:intron 35.0%
AGTAGAAGCCAACAACATTT+GGG - chr1_3:35066497-35066516 Msa0116200:intron 35.0%
CCTAATTTCCCAAATGTTGT+TGG + chr1_3:35066508-35066527 None:intergenic 35.0%
CCAACAACATTTGGGAAATT+AGG - chr1_3:35066505-35066524 Msa0116200:intron 35.0%
TACTACTAAATCTTGAGGTG+TGG + chr1_3:35066610-35066629 None:intergenic 35.0%
AGGAAGAAACTGTTATAGGA+TGG - chr1_3:35066684-35066703 Msa0116200:intron 35.0%
! AGCAACGATGAGTTGAAAAT+AGG - chr1_3:35066730-35066749 Msa0116200:intron 35.0%
AGGATGAAACATTTAGCATC+CGG - chr1_3:35066765-35066784 Msa0116200:intron 35.0%
ACAGGGGGTAATACAATAAA+AGG - chr1_3:35067047-35067066 Msa0116200:intron 35.0%
CAGGGGGTAATACAATAAAA+GGG - chr1_3:35067048-35067067 Msa0116200:intron 35.0%
AGGGGGTAATACAATAAAAG+GGG - chr1_3:35067049-35067068 Msa0116200:intron 35.0%
TAGGGCTAAAATATTTACCC+GGG - chr1_3:35067279-35067298 Msa0116200:intron 35.0%
!! GAAAAATGTGAGTGCTACTT+TGG + chr1_3:35067361-35067380 None:intergenic 35.0%
CTAAACATGACAACAAAGCA+AGG + chr1_3:35067399-35067418 None:intergenic 35.0%
CATGTTTAGTCATAACCTCA+TGG - chr1_3:35067410-35067429 Msa0116200:intron 35.0%
GACATGCACATCATATATTC+AGG + chr1_3:35067490-35067509 None:intergenic 35.0%
AAATTTAGGTACCATGCTTG+TGG + chr1_3:35067656-35067675 None:intergenic 35.0%
GATTGAATTGGGAAGCAAAT+AGG + chr1_3:35067849-35067868 None:intergenic 35.0%
! GTCTTATTCATTTGGATGCT+TGG - chr1_3:35068108-35068127 Msa0116200:intron 35.0%
CTTATTCATTTGGATGCTTG+GGG - chr1_3:35068110-35068129 Msa0116200:intron 35.0%
TTATTCATTTGGATGCTTGG+GGG - chr1_3:35068111-35068130 Msa0116200:intron 35.0%
AACGTAGTGACGACATTTAT+AGG - chr1_3:35068255-35068274 Msa0116200:CDS 35.0%
GACGACATTTATAGGATGAA+AGG - chr1_3:35068263-35068282 Msa0116200:CDS 35.0%
AAAGGTCTTCTATCTGTTCA+AGG - chr1_3:35068281-35068300 Msa0116200:CDS 35.0%
!!! CATGGCTTTTTTCTGTAACA+GGG - chr1_3:35068485-35068504 Msa0116200:intron 35.0%
GGAGTTCATGACATATTTCA+AGG - chr1_3:35068506-35068525 Msa0116200:CDS 35.0%
TGACATATTTCAAGGTTCAC+CGG - chr1_3:35068514-35068533 Msa0116200:CDS 35.0%
AATGCTGAGGAATTGGAAAA+GGG - chr1_3:35068599-35068618 Msa0116200:intron 35.0%
TTCTTAGTATCACAGCAAAC+AGG + chr1_3:35068633-35068652 None:intergenic 35.0%
GAACCTTCATTGAAAGATGA+AGG + chr1_3:35068789-35068808 None:intergenic 35.0%
TCTGAATCATATCCTCACAG+CGG - chr1_3:35062954-35062973 Msa0116200:CDS 40.0%
! TTGTCTTTGCTGTACTGTGA+GGG - chr1_3:35063181-35063200 Msa0116200:CDS 40.0%
GAATTAGTCACGTCCAAGAA+AGG - chr1_3:35063227-35063246 Msa0116200:CDS 40.0%
TAATACAGGTTTGGCGAATC+CGG - chr1_3:35063372-35063391 Msa0116200:intron 40.0%
! AATCCAGACCTTTTATGCTG+AGG - chr1_3:35063402-35063421 Msa0116200:intron 40.0%
TATCCTCAGCATAAAAGGTC+TGG + chr1_3:35063408-35063427 None:intergenic 40.0%
! GCTATCCCGTTATGGAATTT+TGG + chr1_3:35064217-35064236 None:intergenic 40.0%
! AAATTCCATAACGGGATAGC+AGG - chr1_3:35064217-35064236 Msa0116200:intron 40.0%
TAACTGTGACTGACAAGAAG+AGG - chr1_3:35064302-35064321 Msa0116200:intron 40.0%
AACTGTGACTGACAAGAAGA+GGG - chr1_3:35064303-35064322 Msa0116200:intron 40.0%
GCTGCACCTCATAATTAGAT+AGG + chr1_3:35064432-35064451 None:intergenic 40.0%
!! CATATAGCAGCAGAGCATTT+TGG + chr1_3:35065074-35065093 None:intergenic 40.0%
CAAAATGCTCTGCTGCTATA+TGG - chr1_3:35065072-35065091 Msa0116200:intron 40.0%
CGAATCAGACATCACTTCTT+TGG - chr1_3:35065529-35065548 Msa0116200:intron 40.0%
! GATTATGTTCTTGGCATTGG+AGG - chr1_3:35065728-35065747 Msa0116200:intron 40.0%
ATATGTACAGGCTAGCAAGA+TGG + chr1_3:35065875-35065894 None:intergenic 40.0%
GATGTTACGTTACGGTATCA+AGG + chr1_3:35066206-35066225 None:intergenic 40.0%
TTAAGTACAAGGACGAAGCT+AGG - chr1_3:35066231-35066250 Msa0116200:intron 40.0%
CCTATATATTTCATGGGTGG+CGG + chr1_3:35066276-35066295 None:intergenic 40.0%
GGTCCTATATATTTCATGGG+TGG + chr1_3:35066279-35066298 None:intergenic 40.0%
! CCAACTGGATATGAAAGCAT+GGG + chr1_3:35066337-35066356 None:intergenic 40.0%
ACCAACTGGATATGAAAGCA+TGG + chr1_3:35066338-35066357 None:intergenic 40.0%
! GTTGGCTTCTACTTGGAAAT+AGG + chr1_3:35066490-35066509 None:intergenic 40.0%
TACTAAATCTTGAGGTGTGG+CGG + chr1_3:35066607-35066626 None:intergenic 40.0%
TTGCAAACAAAGTAGGAGCA+GGG - chr1_3:35066652-35066671 Msa0116200:intron 40.0%
TAGGAGCAGGGAAACAAAAT+AGG - chr1_3:35066664-35066683 Msa0116200:intron 40.0%
GGATGAAACATTTAGCATCC+GGG - chr1_3:35066766-35066785 Msa0116200:intron 40.0%
GGGGGTAATACAATAAAAGG+GGG - chr1_3:35067050-35067069 Msa0116200:intron 40.0%
GAAAGAGTAGGAAGCAGATA+AGG - chr1_3:35067192-35067211 Msa0116200:intron 40.0%
GCACATCATATATTCAGGCT+TGG + chr1_3:35067485-35067504 None:intergenic 40.0%
!! GATCATGATGATGGTGTTCA+TGG + chr1_3:35067602-35067621 None:intergenic 40.0%
CATGTGAATCTTCATGGTGA+TGG + chr1_3:35067632-35067651 None:intergenic 40.0%
TGTGGTCATGTGAATCTTCA+TGG + chr1_3:35067638-35067657 None:intergenic 40.0%
AGGAAACTTAGACCTTGAGA+AGG - chr1_3:35068041-35068060 Msa0116200:CDS 40.0%
AGCAAGTACTAACCTTCTCA+AGG + chr1_3:35068056-35068075 None:intergenic 40.0%
CTGAAGCAAAAAGTCTTCGT+TGG - chr1_3:35068159-35068178 Msa0116200:intron 40.0%
GTCACTACGTTCCATCAATA+AGG + chr1_3:35068246-35068265 None:intergenic 40.0%
TCAATTAAGCGACATGAGTC+AGG - chr1_3:35068371-35068390 Msa0116200:CDS 40.0%
CGAGACACATATAACACAAG+CGG - chr1_3:35068397-35068416 Msa0116200:intron 40.0%
TCAGTTTCGCCAATAAAGCA+TGG - chr1_3:35068467-35068486 Msa0116200:intron 40.0%
!!! GCATGGCTTTTTTCTGTAAC+AGG - chr1_3:35068484-35068503 Msa0116200:intron 40.0%
TATTTCAAGGTTCACCGGAA+AGG - chr1_3:35068519-35068538 Msa0116200:CDS 40.0%
GAACTTGAATGCTGAGGAAT+TGG - chr1_3:35068592-35068611 Msa0116200:intron 40.0%
GAATGCTGAGGAATTGGAAA+AGG - chr1_3:35068598-35068617 Msa0116200:intron 40.0%
ATGCTGAGGAATTGGAAAAG+GGG - chr1_3:35068600-35068619 Msa0116200:intron 40.0%
AGAAGAGTGGTGAAGGGTTT+GGG + chr1_3:35062615-35062634 None:intergenic 45.0%
AAGAAGAGTGGTGAAGGGTT+TGG + chr1_3:35062616-35062635 None:intergenic 45.0%
GTGGAAAGAAGAGTGGTGAA+GGG + chr1_3:35062621-35062640 None:intergenic 45.0%
!! AGAGGCGAGTGAGTTTGTTA+TGG + chr1_3:35062722-35062741 None:intergenic 45.0%
GTTATCAGGTGGAATAACGG+TGG + chr1_3:35062796-35062815 None:intergenic 45.0%
GCGGTTATCAGGTGGAATAA+CGG + chr1_3:35062799-35062818 None:intergenic 45.0%
!!! ACCATCATCACCGGTTTTCT+CGG - chr1_3:35062828-35062847 Msa0116200:three_prime_UTR 45.0%
GGAGCATGGAAAACGAATTG+CGG - chr1_3:35062975-35062994 Msa0116200:CDS 45.0%
! GTTGTCTTTGCTGTACTGTG+AGG - chr1_3:35063180-35063199 Msa0116200:CDS 45.0%
! TGTCTTTGCTGTACTGTGAG+GGG - chr1_3:35063182-35063201 Msa0116200:CDS 45.0%
!! GTTGGATGGTGTTGTCACTT+TGG - chr1_3:35063447-35063466 Msa0116200:CDS 45.0%
! TTGGTTGATGCGAAACATGC+TGG - chr1_3:35063466-35063485 Msa0116200:CDS 45.0%
CTTGACGAGGTTAAGCCAAA+AGG - chr1_3:35063496-35063515 Msa0116200:CDS 45.0%
GCTATAGCGCTATTGCATAG+CGG - chr1_3:35063849-35063868 Msa0116200:CDS 45.0%
TTGGGAGATAGCAGCTATAG+TGG - chr1_3:35063926-35063945 Msa0116200:CDS 45.0%
!!! CCGTTATGGAATTTTGGGGT+CGG + chr1_3:35064211-35064230 None:intergenic 45.0%
CCGACCCCAAAATTCCATAA+CGG - chr1_3:35064208-35064227 Msa0116200:intron 45.0%
CGACCCCAAAATTCCATAAC+GGG - chr1_3:35064209-35064228 Msa0116200:intron 45.0%
ACTGTGACTGACAAGAAGAG+GGG - chr1_3:35064304-35064323 Msa0116200:intron 45.0%
TCAATAGCAGCAGAGCAGTT+TGG + chr1_3:35064472-35064491 None:intergenic 45.0%
ACTATATTGCAGTATGGCCC+CGG - chr1_3:35064496-35064515 Msa0116200:intron 45.0%
ATGCATAGAAAGACCAAGCC+GGG + chr1_3:35064517-35064536 None:intergenic 45.0%
GATGCATAGAAAGACCAAGC+CGG + chr1_3:35064518-35064537 None:intergenic 45.0%
!! AGCAGAGCATTTTGGTGTAG+TGG + chr1_3:35065066-35065085 None:intergenic 45.0%
!! CTGAAATATGTAGCGGGCTA+TGG - chr1_3:35065169-35065188 Msa0116200:intron 45.0%
TTGCACCAGACTGATCTTGT+TGG - chr1_3:35065506-35065525 Msa0116200:intron 45.0%
ATTCGCCAACAAGATCAGTC+TGG + chr1_3:35065514-35065533 None:intergenic 45.0%
ACATCACTTCTTTGGTCCAG+CGG - chr1_3:35065537-35065556 Msa0116200:intron 45.0%
!! TTCTTTGGTCCAGCGGATTA+GGG - chr1_3:35065544-35065563 Msa0116200:intron 45.0%
!! TGGCCAGGCTGTTTATTTTC+TGG + chr1_3:35065673-35065692 None:intergenic 45.0%
ACAGCCTGGCCAATTTAAAG+AGG - chr1_3:35065681-35065700 Msa0116200:intron 45.0%
CCTGGCCAATTTAAAGAGGA+CGG - chr1_3:35065685-35065704 Msa0116200:intron 45.0%
AAAGAGGACGGAGTATGGAA+AGG - chr1_3:35065697-35065716 Msa0116200:intron 45.0%
GGAGTATGGAAAGGTGAACT+TGG - chr1_3:35065706-35065725 Msa0116200:intron 45.0%
! TGGCATTGGAGGCTTTGATT+TGG - chr1_3:35065739-35065758 Msa0116200:intron 45.0%
!! TTGGAGGCTTTGATTTGGAG+AGG - chr1_3:35065744-35065763 Msa0116200:CDS 45.0%
ATATGATCCGTGCGTTAGCA+CGG + chr1_3:35066051-35066070 None:intergenic 45.0%
TAACGCACGGATCATATGGA+AGG - chr1_3:35066054-35066073 Msa0116200:intron 45.0%
CCGCCACCCATGAAATATAT+AGG - chr1_3:35066273-35066292 Msa0116200:intron 45.0%
! ACTGGATATGAAAGCATGGG+TGG + chr1_3:35066334-35066353 None:intergenic 45.0%
CCCATGCTTTCATATCCAGT+TGG - chr1_3:35066334-35066353 Msa0116200:intron 45.0%
CTTGCAAACAAAGTAGGAGC+AGG - chr1_3:35066651-35066670 Msa0116200:intron 45.0%
TTAGGGCAACAGTTAGCGTT+CGG - chr1_3:35067110-35067129 Msa0116200:intron 45.0%
CAAAGCAAGGCAGTTGACAA+GGG + chr1_3:35067386-35067405 None:intergenic 45.0%
ACAAAGCAAGGCAGTTGACA+AGG + chr1_3:35067387-35067406 None:intergenic 45.0%
!! GAGAGCGCTGTTAATGATGA+AGG - chr1_3:35067531-35067550 Msa0116200:intron 45.0%
ATGGTCATGGTCATGGCTAT+GGG + chr1_3:35067577-35067596 None:intergenic 45.0%
! GATGATGGTGTTCATGGTCA+TGG + chr1_3:35067596-35067615 None:intergenic 45.0%
!! AATCTTCATGGTGATGGTGG+TGG + chr1_3:35067626-35067645 None:intergenic 45.0%
!! GTGAATCTTCATGGTGATGG+TGG + chr1_3:35067629-35067648 None:intergenic 45.0%
GATTCACATGACCACAAGCA+TGG - chr1_3:35067642-35067661 Msa0116200:intron 45.0%
CATGATCATAGTCACGATCC+TGG - chr1_3:35067991-35068010 Msa0116200:CDS 45.0%
! TCAGTGAGCATAGTTTGCGA+AGG - chr1_3:35068021-35068040 Msa0116200:CDS 45.0%
CTTCGTTGGCATTTATGTGC+TGG - chr1_3:35068173-35068192 Msa0116200:intron 45.0%
CTATAGGCTAACATGTGGCT+TGG - chr1_3:35068218-35068237 Msa0116200:intron 45.0%
!! GTGGCTTGGTACCTTATTGA+TGG - chr1_3:35068232-35068251 Msa0116200:CDS 45.0%
AAGCGGTGTTTGTGATTCAG+AGG - chr1_3:35068414-35068433 Msa0116200:intron 45.0%
TTGTTTGTCCTTGGCTCATC+TGG + chr1_3:35068554-35068573 None:intergenic 45.0%
AGGGAAGAACTTGAATGCTG+AGG - chr1_3:35068586-35068605 Msa0116200:intron 45.0%
!! TTAAATTAACTAAATTAAAT+AGG - chr1_3:35067015-35067034 Msa0116200:intron 5.0%
GGTGGAAAGAAGAGTGGTGA+AGG + chr1_3:35062622-35062641 None:intergenic 50.0%
!! GGTGTTGGTGGAAAGAAGAG+TGG + chr1_3:35062628-35062647 None:intergenic 50.0%
GAGATGAGGTGGATGATGAG+AGG + chr1_3:35062740-35062759 None:intergenic 50.0%
AATAACGGTGGAGACGTCGT+CGG + chr1_3:35062784-35062803 None:intergenic 50.0%
!! TGATGATGGTGGCAGGAATG+CGG + chr1_3:35062818-35062837 None:intergenic 50.0%
ATTCCTGCCACCATCATCAC+CGG - chr1_3:35062819-35062838 Msa0116200:three_prime_UTR 50.0%
!! GAGAAAACCGGTGATGATGG+TGG + chr1_3:35062829-35062848 None:intergenic 50.0%
ACCGAGAAAACCGGTGATGA+TGG + chr1_3:35062832-35062851 None:intergenic 50.0%
!!! ATCACCGGTTTTCTCGGTTC+CGG - chr1_3:35062834-35062853 Msa0116200:three_prime_UTR 50.0%
TTAGTTGCGGCAAAAACGGC+CGG - chr1_3:35063128-35063147 Msa0116200:intron 50.0%
!! TGCTGGTTTGCATCTTGACG+AGG - chr1_3:35063483-35063502 Msa0116200:CDS 50.0%
CGAGGTTAAGCCAAAAGGTG+TGG - chr1_3:35063501-35063520 Msa0116200:CDS 50.0%
! GCCAAAAGGTGTGGTCAATG+AGG - chr1_3:35063510-35063529 Msa0116200:intron 50.0%
! GCCTCATTGACCACACCTTT+TGG + chr1_3:35063514-35063533 None:intergenic 50.0%
! TCCATAACGGGATAGCAGGA+TGG - chr1_3:35064221-35064240 Msa0116200:intron 50.0%
CTGTGACTGACAAGAAGAGG+GGG - chr1_3:35064305-35064324 Msa0116200:intron 50.0%
!! AGTTTGGTGATGCGGTGAGA+TGG + chr1_3:35064456-35064475 None:intergenic 50.0%
!! AGCAGAGCAGTTTGGTGATG+CGG + chr1_3:35064464-35064483 None:intergenic 50.0%
TGCATAGAAAGACCAAGCCG+GGG + chr1_3:35064516-35064535 None:intergenic 50.0%
CTGAACTACATAGTGCGCTG+TGG - chr1_3:35064559-35064578 Msa0116200:intron 50.0%
CGCCGCGACAACTATTGTTT+CGG - chr1_3:35065019-35065038 Msa0116200:intron 50.0%
GGCCGAAACAATAGTTGTCG+CGG + chr1_3:35065024-35065043 None:intergenic 50.0%
!! TTTTGGTGTAGTGGCCGCAA+CGG + chr1_3:35065057-35065076 None:intergenic 50.0%
! CTTCTTTGGTCCAGCGGATT+AGG - chr1_3:35065543-35065562 Msa0116200:intron 50.0%
AGACACTAACCCTAATCCGC+TGG + chr1_3:35065556-35065575 None:intergenic 50.0%
CCGTCCTCTTTAAATTGGCC+AGG + chr1_3:35065688-35065707 None:intergenic 50.0%
TATGATCCGTGCGTTAGCAC+GGG + chr1_3:35066050-35066069 None:intergenic 50.0%
GTGCTAACGCACGGATCATA+TGG - chr1_3:35066050-35066069 Msa0116200:intron 50.0%
CGGTATCAAGGACGATGTCA+TGG + chr1_3:35066194-35066213 None:intergenic 50.0%
! ATGAAAGCATGGGTGGCGAA+TGG + chr1_3:35066327-35066346 None:intergenic 50.0%
TAGGGCAACAGTTAGCGTTC+GGG - chr1_3:35067111-35067130 Msa0116200:intron 50.0%
CATGGTCATGGTCATGGCTA+TGG + chr1_3:35067578-35067597 None:intergenic 50.0%
CATGGTCATGGTCATGGTCA+TGG + chr1_3:35067584-35067603 None:intergenic 50.0%
GGTGTTCATGGTCATGGTCA+TGG + chr1_3:35067590-35067609 None:intergenic 50.0%
! GGTGGTGGTGATCATGATGA+TGG + chr1_3:35067611-35067630 None:intergenic 50.0%
ATGCTCACTGATGAAACGCC+AGG + chr1_3:35068012-35068031 None:intergenic 50.0%
AAGGTTCACCGGAAAGGTTG+TGG - chr1_3:35068525-35068544 Msa0116200:CDS 50.0%
GCAGGAATGCGGTTATCAGG+TGG + chr1_3:35062807-35062826 None:intergenic 55.0%
GTGGCAGGAATGCGGTTATC+AGG + chr1_3:35062810-35062829 None:intergenic 55.0%
!! AAACCGGTGATGATGGTGGC+AGG + chr1_3:35062825-35062844 None:intergenic 55.0%
CTTGCCGGAACCGAGAAAAC+CGG + chr1_3:35062841-35062860 None:intergenic 55.0%
CATATCCTCACAGCGGAGCA+TGG - chr1_3:35062961-35062980 Msa0116200:CDS 55.0%
! GTTTTCCATGCTCCGCTGTG+AGG + chr1_3:35062969-35062988 None:intergenic 55.0%
AAGGTCTGGATTATCGGCGC+CGG + chr1_3:35063394-35063413 None:intergenic 55.0%
GCCATCCTGCTATCCCGTTA+TGG + chr1_3:35064225-35064244 None:intergenic 55.0%
CAATAGTTGTCGCGGCGAGA+TGG + chr1_3:35065016-35065035 None:intergenic 55.0%
TCTGGCTGCCACAACCTTTC+CGG + chr1_3:35068536-35068555 None:intergenic 55.0%
! GGTTTGAGGCGGAGATGAGG+TGG + chr1_3:35062751-35062770 None:intergenic 60.0%
! GGTGGTTTGAGGCGGAGATG+AGG + chr1_3:35062754-35062773 None:intergenic 60.0%
GAGTCGTCGGTGGTTTGAGG+CGG + chr1_3:35062762-35062781 None:intergenic 60.0%
TCGGAGTCGTCGGTGGTTTG+AGG + chr1_3:35062765-35062784 None:intergenic 60.0%
! CGGTTTTCTCGGTTCCGGCA+AGG - chr1_3:35062839-35062858 Msa0116200:three_prime_UTR 60.0%
ATTGCAGTATGGCCCCGGCT+TGG - chr1_3:35064501-35064520 Msa0116200:intron 60.0%
GGCCACCATAGCTTCCGTTG+CGG - chr1_3:35065040-35065059 Msa0116200:intron 60.0%
AGTGGCCGCAACGGAAGCTA+TGG + chr1_3:35065048-35065067 None:intergenic 60.0%
CATCGACCCGTGCTAACGCA+CGG - chr1_3:35066041-35066060 Msa0116200:intron 60.0%
TGTGGCAGCCAGATGAGCCA+AGG - chr1_3:35068543-35068562 Msa0116200:intron 60.0%
GGAGACGTCGTCGGAGTCGT+CGG + chr1_3:35062775-35062794 None:intergenic 65.0%
GGCCGCAACGGAAGCTATGG+TGG + chr1_3:35065045-35065064 None:intergenic 65.0%
CGTGCGTTAGCACGGGTCGA+TGG + chr1_3:35066043-35066062 None:intergenic 65.0%
GACGTCGTCGGAGTCGTCGG+TGG + chr1_3:35062772-35062791 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 35062603 35068903 35062603 ID=Msa0116200;Name=Msa0116200
chr1_3 mRNA 35062603 35068903 35062603 ID=Msa0116200-mRNA-1;Parent=Msa0116200;Name=Msa0116200-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.87|0.88|1|1|1|9|260|418
chr1_3 exon 35062603 35063000 35062603 ID=Msa0116200-mRNA-1:exon:11204;Parent=Msa0116200-mRNA-1
chr1_3 exon 35063178 35063282 35063178 ID=Msa0116200-mRNA-1:exon:11203;Parent=Msa0116200-mRNA-1
chr1_3 exon 35063444 35063526 35063444 ID=Msa0116200-mRNA-1:exon:11202;Parent=Msa0116200-mRNA-1
chr1_3 exon 35063843 35063979 35063843 ID=Msa0116200-mRNA-1:exon:11201;Parent=Msa0116200-mRNA-1
chr1_3 exon 35065741 35065832 35065741 ID=Msa0116200-mRNA-1:exon:11200;Parent=Msa0116200-mRNA-1
chr1_3 exon 35067930 35068126 35067930 ID=Msa0116200-mRNA-1:exon:11199;Parent=Msa0116200-mRNA-1
chr1_3 exon 35068225 35068405 35068225 ID=Msa0116200-mRNA-1:exon:11198;Parent=Msa0116200-mRNA-1
chr1_3 exon 35068495 35068560 35068495 ID=Msa0116200-mRNA-1:exon:11197;Parent=Msa0116200-mRNA-1
chr1_3 exon 35068646 35068903 35068646 ID=Msa0116200-mRNA-1:exon:11196;Parent=Msa0116200-mRNA-1
chr1_3 CDS 35068646 35068903 35068646 ID=Msa0116200-mRNA-1:cds;Parent=Msa0116200-mRNA-1
chr1_3 CDS 35068495 35068560 35068495 ID=Msa0116200-mRNA-1:cds;Parent=Msa0116200-mRNA-1
chr1_3 CDS 35068225 35068405 35068225 ID=Msa0116200-mRNA-1:cds;Parent=Msa0116200-mRNA-1
chr1_3 CDS 35067930 35068126 35067930 ID=Msa0116200-mRNA-1:cds;Parent=Msa0116200-mRNA-1
chr1_3 CDS 35065741 35065832 35065741 ID=Msa0116200-mRNA-1:cds;Parent=Msa0116200-mRNA-1
chr1_3 CDS 35063843 35063979 35063843 ID=Msa0116200-mRNA-1:cds;Parent=Msa0116200-mRNA-1
chr1_3 CDS 35063444 35063526 35063444 ID=Msa0116200-mRNA-1:cds;Parent=Msa0116200-mRNA-1
chr1_3 CDS 35063178 35063282 35063178 ID=Msa0116200-mRNA-1:cds;Parent=Msa0116200-mRNA-1
chr1_3 CDS 35062863 35063000 35062863 ID=Msa0116200-mRNA-1:cds;Parent=Msa0116200-mRNA-1
chr1_3 three_prime_UTR 35062603 35062862 35062603 ID=Msa0116200-mRNA-1:three_prime_utr;Parent=Msa0116200-mRNA-1
Gene Sequence

>Msa0116200

TATCGCAAACCCAAACCCTTCACCACTCTTCTTTCCACCAACACCAAAATCAAAAGAACTATTCATTTTCAACCGTTAAACTCATCTCCAATTTCTACAATCTTCCGTAGTAACAACCATAACAAACTCACTCGCCTCTCATCATCCACCTCATCTCCGCCTCAAACCACCGACGACTCCGACGACGTCTCCACCGTTATTCCACCTGATAACCGCATTCCTGCCACCATCATCACCGGTTTTCTCGGTTCCGGCAAGACAACACTTCTGAATCATATCCTCACAGCGGAGCATGGAAAACGAATTGCGGTTATTGAAAATGAGTTTGGTGAGATTGATATTGATGGTTCTTTAGTTGCGGCAAAAACGGCCGGTGCTGAAGATATTATGTTGTTGAACAATGGTTGTCTTTGCTGTACTGTGAGGGGTGACCTTGTTAGAATGATATCTGAATTAGTCACGTCCAAGAAAGGCAAATTTGACCATATTGTTATTGAGACTACTGGTTTGGCGAATCCGGCGCCGATAATCCAGACCTTTTATGCTGAGGATACTATTTTTAATGAAGTCAAGTTGGATGGTGTTGTCACTTTGGTTGATGCGAAACATGCTGGTTTGCATCTTGACGAGGTTAAGCCAAAAGGTGTGGTCAATGAGGCAGTAGAACAGATTGCATATGCTGATCGAATAATCGTAAATAAGAAAATAAACAGCCTGGCCAATTTAAAGAGGACGGAGTATGGAAAGGTGAACTTGGATTATGTTCTTGGCATTGGAGGCTTTGATTTGGAGAGGATTGAGAGCGCTGTTAATGATGAAGGATCAAAAGACGAAGATCACGCCCATAGCCATGACCATGACCATGACCATGAACACCATCATCATGATCACCACCACCATCACCATGAAGATTCACATGACCACAAGCATGATCATCACGCTCATGATCATAGTCACGATCCTGGCGTTTCATCAGTGAGCATAGTTTGCGAAGGAAACTTAGACCTTGAGAAGGCTAACATGTGGCTTGGTACCTTATTGATGGAACGTAGTGACGACATTTATAGGATGAAAGGTCTTCTATCTGTTCAAGGAATGAATGAAAGATTTGTCTTTCAGGGAGTTCATGACATATTTCAAGGTTCACCGGAAAGGTTGTGGCAGCCAGATGAGCCAAGGACAAACAAAATTGTTTTCATAGGGAAGAACTTGAATGCTGAGGAATTGGAAAAGGGGTTCAAGACCTGTTTGCTGTGA

Protein sequence

>Msa0116200

YRKPKPFTTLLSTNTKIKRTIHFQPLNSSPISTIFRSNNHNKLTRLSSSTSSPPQTTDDSDDVSTVIPPDNRIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEFGEIDIDGSLVAAKTAGAEDIMLLNNGCLCCTVRGDLVRMISELVTSKKGKFDHIVIETTGLANPAPIIQTFYAEDTIFNEVKLDGVVTLVDAKHAGLHLDEVKPKGVVNEAVEQIAYADRIIVNKKINSLANLKRTEYGKVNLDYVLGIGGFDLERIESAVNDEGSKDEDHAHSHDHDHDHEHHHHDHHHHHHEDSHDHKHDHHAHDHSHDPGVSSVSIVCEGNLDLEKANMWLGTLLMERSDDIYRMKGLLSVQGMNERFVFQGVHDIFQGSPERLWQPDEPRTNKIVFIGKNLNAEELEKGFKTCLL*