AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0398850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398850 MtrunA17_Chr3g0086951 94.330 194 6 1 1 194 1 189 2.59e-126 353
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398850 AT5G08050.1 63.190 163 45 2 31 192 8 156 4.24e-51 162

Find 50 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATTTGATTTCTCTCTTA+TGG 0.205748 3_2:+20909525 Msa0398850:exon
TATTGTCGAGGTTGGATTAC+AGG 0.268191 3_2:+20909419 Msa0398850:CDS
GAGACAGATGGAACTGGTTT+GGG 0.332824 3_2:-20907894 None:intergenic
AGAGACAGATGGAACTGGTT+TGG 0.346099 3_2:-20907895 None:intergenic
TGTGTTGTTGGTGGTTCTGC+TGG 0.362863 3_2:+20909459 Msa0398850:CDS
TAAAACTGTAGCTTCTAAAA+AGG 0.383526 3_2:+20907917 Msa0398850:CDS
GTTGCTTTGGTCTGTGTTGT+TGG 0.388658 3_2:+20909447 Msa0398850:CDS
ATTACAGGCTGTGGTTGCTT+TGG 0.392075 3_2:+20909434 Msa0398850:CDS
TAGCGATAATCCTGCTTTCT+CGG 0.404741 3_2:-20909241 None:intergenic
CATTCTTGTGAGGAGTTTAA+CGG 0.405852 3_2:-20909166 None:intergenic
AACCTCGACAATATTATCTT+CGG 0.410629 3_2:-20909409 None:intergenic
TAAACCTGCTTTCTCTGCCT+TGG 0.422974 3_2:-20909208 None:intergenic
TGATAAAACACCGAGTTCTT+CGG 0.430623 3_2:-20909298 None:intergenic
CGTTAAACTCCTCACAAGAA+TGG 0.467112 3_2:+20909167 Msa0398850:CDS
GCCATGGATTTGACCAGAAA+AGG 0.471154 3_2:-20907867 None:intergenic
AAGAGTGATCCTGGAGTTGA+TGG 0.471176 3_2:-20909333 None:intergenic
GATCAAGCTGTTACTACAGA+TGG 0.487910 3_2:-20907802 None:intergenic
CTTATTGTATTATGTTGTGA+AGG 0.491912 3_2:+20909571 Msa0398850:three_prime_UTR
CTATCAACAATAGAGAAACT+TGG 0.493062 3_2:+20909261 Msa0398850:CDS
CTGAGTGTGAAGAGTGATCC+TGG 0.494258 3_2:-20909342 None:intergenic
ACCTCGACAATATTATCTTC+GGG 0.498930 3_2:-20909408 None:intergenic
GAAGATAATATTGTCGAGGT+TGG 0.505740 3_2:+20909411 Msa0398850:CDS
TTATCAGCCGCCGAGAAAGC+AGG 0.520670 3_2:+20909231 Msa0398850:CDS
AACTGGTTTGGGAGTAGCCA+TGG 0.526284 3_2:-20907883 None:intergenic
GCTTTGGTCTGTGTTGTTGG+TGG 0.531295 3_2:+20909450 Msa0398850:CDS
CTCTCAAAAGCCGAAGAACT+CGG 0.532978 3_2:+20909288 Msa0398850:CDS
CGAGGTTGGATTACAGGCTG+TGG 0.533900 3_2:+20909425 Msa0398850:CDS
GTAGAATAGTGACCATGGAT+TGG 0.535163 3_2:-20907651 None:intergenic
AATTCAACTGTATTCCCACT+TGG 0.537612 3_2:+20909108 Msa0398850:CDS
TCCTAGGTTGTTCCCCAAGT+GGG 0.538069 3_2:-20909122 None:intergenic
TTATTGTATTATGTTGTGAA+GGG 0.539234 3_2:+20909572 Msa0398850:three_prime_UTR
TTAACCAAGGCAGAGAAAGC+AGG 0.541705 3_2:+20909204 Msa0398850:CDS
GCTACTGATCCATCAACTCC+AGG 0.551246 3_2:+20909324 Msa0398850:CDS
ATTCAACTGTATTCCCACTT+GGG 0.553323 3_2:+20909109 Msa0398850:CDS
ACTTATGATGATGACAATGA+AGG 0.557494 3_2:+20907770 Msa0398850:exon
GTCGATGTTACAGCACTCCT+AGG 0.557906 3_2:-20909138 None:intergenic
TCAGTTGTTCCATTCTTGTG+AGG 0.560445 3_2:-20909176 None:intergenic
TCCCACTTGGGGAACAACCT+AGG 0.596244 3_2:+20909121 Msa0398850:CDS
CACAATAGAAAACCAATCCA+TGG 0.596432 3_2:+20907639 Msa0398850:five_prime_UTR
TTCAACTGTATTCCCACTTG+GGG 0.603934 3_2:+20909110 Msa0398850:CDS
TCCCGAAGATAATATTGTCG+AGG 0.606885 3_2:+20909407 Msa0398850:CDS
GGAACAAGATAAACAAACAA+AGG 0.614999 3_2:-20909387 None:intergenic
ATGAGGTAGAATAGTGACCA+TGG 0.616340 3_2:-20907656 None:intergenic
CTCCTAGGTTGTTCCCCAAG+TGG 0.623775 3_2:-20909123 None:intergenic
GATGATGATAATTGATGATG+AGG 0.627667 3_2:-20907673 None:intergenic
GTTACTACAGATGGATGCTG+AGG 0.660105 3_2:-20907793 None:intergenic
ATAATACAATAAGATAACAA+AGG 0.670551 3_2:-20909561 None:intergenic
TCATAAGCAATGATAATGAG+TGG 0.685974 3_2:-20907695 None:intergenic
CGATAATCCTGCTTTCTCGG+CGG 0.695629 3_2:-20909238 None:intergenic
ACAACTGAGACTGTTAACCA+AGG 0.730927 3_2:+20909191 Msa0398850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTGCATAATGATAAA+AGG - chr3_2:20908016-20908035 None:intergenic 15.0%
!! TAACATAAAAATTTCTATGT+AGG - chr3_2:20908495-20908514 None:intergenic 15.0%
!! ATAATACAATAAGATAACAA+AGG - chr3_2:20909564-20909583 None:intergenic 15.0%
!!! ATGATTCAAAGTTTTATATA+TGG + chr3_2:20909633-20909652 Msa0398850:three_prime_UTR 15.0%
!! TAATATTGCATAATGATAAA+AGG - chr3_2:20908016-20908035 None:intergenic 15.0%
!! TAACATAAAAATTTCTATGT+AGG - chr3_2:20908495-20908514 None:intergenic 15.0%
!! ATAATACAATAAGATAACAA+AGG - chr3_2:20909564-20909583 None:intergenic 15.0%
!!! ATGATTCAAAGTTTTATATA+TGG + chr3_2:20909633-20909652 Msa0398850:three_prime_UTR 15.0%
!!! TATATTTTCAAAAAATCACC+TGG + chr3_2:20908437-20908456 Msa0398850:intron 20.0%
!!! ATGTTATCAAACTTTTAAGT+AGG + chr3_2:20908509-20908528 Msa0398850:intron 20.0%
!!! TAGAAATGCTTTGTTTAAAT+AGG - chr3_2:20908634-20908653 None:intergenic 20.0%
!!! ATTATGTAAACCATGTTTTT+TGG + chr3_2:20908663-20908682 Msa0398850:intron 20.0%
!!! TTATGTAAACCATGTTTTTT+GGG + chr3_2:20908664-20908683 Msa0398850:intron 20.0%
!!! TTATTTTATTTTCTGCAAGT+TGG - chr3_2:20909508-20909527 None:intergenic 20.0%
!!! TAAATTTGATTTCTCTCTTA+TGG + chr3_2:20909525-20909544 Msa0398850:exon 20.0%
!! TTATTGTATTATGTTGTGAA+GGG + chr3_2:20909572-20909591 Msa0398850:three_prime_UTR 20.0%
!!! CAAAGTTTTATATATGGAAA+TGG + chr3_2:20909639-20909658 Msa0398850:three_prime_UTR 20.0%
!!! TATATTTTCAAAAAATCACC+TGG + chr3_2:20908437-20908456 Msa0398850:intron 20.0%
!!! ATGTTATCAAACTTTTAAGT+AGG + chr3_2:20908509-20908528 Msa0398850:intron 20.0%
!!! TAGAAATGCTTTGTTTAAAT+AGG - chr3_2:20908634-20908653 None:intergenic 20.0%
!!! ATTATGTAAACCATGTTTTT+TGG + chr3_2:20908663-20908682 Msa0398850:intron 20.0%
!!! TTATGTAAACCATGTTTTTT+GGG + chr3_2:20908664-20908683 Msa0398850:intron 20.0%
!!! TTATTTTATTTTCTGCAAGT+TGG - chr3_2:20909508-20909527 None:intergenic 20.0%
!!! TAAATTTGATTTCTCTCTTA+TGG + chr3_2:20909525-20909544 Msa0398850:exon 20.0%
!! TTATTGTATTATGTTGTGAA+GGG + chr3_2:20909572-20909591 Msa0398850:three_prime_UTR 20.0%
!!! CAAAGTTTTATATATGGAAA+TGG + chr3_2:20909639-20909658 Msa0398850:three_prime_UTR 20.0%
!! TAAAACTGTAGCTTCTAAAA+AGG + chr3_2:20907917-20907936 Msa0398850:CDS 25.0%
! TTATGCAATATTATACTGTG+TGG + chr3_2:20908023-20908042 Msa0398850:intron 25.0%
! TACCACTTTAATTATGAGAA+AGG + chr3_2:20908073-20908092 Msa0398850:intron 25.0%
! AACCTTTCTCATAATTAAAG+TGG - chr3_2:20908078-20908097 None:intergenic 25.0%
!!! CATAAACCGTAATTTGTTAT+AGG + chr3_2:20908211-20908230 Msa0398850:intron 25.0%
! CAAACTCCTATAACAAATTA+CGG - chr3_2:20908220-20908239 None:intergenic 25.0%
!! AGGAATCTTTAGGAAAAAAA+GGG + chr3_2:20908411-20908430 Msa0398850:intron 25.0%
! ATTGAAAAGGTTAAATAACC+AGG - chr3_2:20908458-20908477 None:intergenic 25.0%
!! AAACAAAGCATTTCTAAACA+TGG + chr3_2:20908638-20908657 Msa0398850:intron 25.0%
!! TAGAATTTTCCCAAAAAACA+TGG - chr3_2:20908676-20908695 None:intergenic 25.0%
!!! TGTTTTTTGGGAAAATTCTA+TGG + chr3_2:20908676-20908695 Msa0398850:intron 25.0%
!!! TACTAGTTCTAAAAAACATC+TGG + chr3_2:20908831-20908850 Msa0398850:intron 25.0%
!!! ACTAGTTCTAAAAAACATCT+GGG + chr3_2:20908832-20908851 Msa0398850:intron 25.0%
!!! AGCTTTGTTTTACTTCTTTT+AGG + chr3_2:20909363-20909382 Msa0398850:CDS 25.0%
! CTTATTGTATTATGTTGTGA+AGG + chr3_2:20909571-20909590 Msa0398850:three_prime_UTR 25.0%
!! TAAAACTGTAGCTTCTAAAA+AGG + chr3_2:20907917-20907936 Msa0398850:CDS 25.0%
! TTATGCAATATTATACTGTG+TGG + chr3_2:20908023-20908042 Msa0398850:intron 25.0%
! TACCACTTTAATTATGAGAA+AGG + chr3_2:20908073-20908092 Msa0398850:intron 25.0%
! AACCTTTCTCATAATTAAAG+TGG - chr3_2:20908078-20908097 None:intergenic 25.0%
!!! CATAAACCGTAATTTGTTAT+AGG + chr3_2:20908211-20908230 Msa0398850:intron 25.0%
! CAAACTCCTATAACAAATTA+CGG - chr3_2:20908220-20908239 None:intergenic 25.0%
!! AGGAATCTTTAGGAAAAAAA+GGG + chr3_2:20908411-20908430 Msa0398850:intron 25.0%
! ATTGAAAAGGTTAAATAACC+AGG - chr3_2:20908458-20908477 None:intergenic 25.0%
!! AAACAAAGCATTTCTAAACA+TGG + chr3_2:20908638-20908657 Msa0398850:intron 25.0%
!! TAGAATTTTCCCAAAAAACA+TGG - chr3_2:20908676-20908695 None:intergenic 25.0%
!!! TGTTTTTTGGGAAAATTCTA+TGG + chr3_2:20908676-20908695 Msa0398850:intron 25.0%
!!! TACTAGTTCTAAAAAACATC+TGG + chr3_2:20908831-20908850 Msa0398850:intron 25.0%
!!! ACTAGTTCTAAAAAACATCT+GGG + chr3_2:20908832-20908851 Msa0398850:intron 25.0%
!!! AGCTTTGTTTTACTTCTTTT+AGG + chr3_2:20909363-20909382 Msa0398850:CDS 25.0%
! CTTATTGTATTATGTTGTGA+AGG + chr3_2:20909571-20909590 Msa0398850:three_prime_UTR 25.0%
!! GATGATGATAATTGATGATG+AGG - chr3_2:20907676-20907695 None:intergenic 30.0%
! TCATAAGCAATGATAATGAG+TGG - chr3_2:20907698-20907717 None:intergenic 30.0%
! ACTTATGATGATGACAATGA+AGG + chr3_2:20907770-20907789 Msa0398850:exon 30.0%
!! TCATCAAAGAGCATTAAAAC+TGG - chr3_2:20908171-20908190 None:intergenic 30.0%
! TGCTCTTTGATGATATGATA+TGG + chr3_2:20908178-20908197 Msa0398850:intron 30.0%
ATTACGGTTTATGTATACCT+AGG - chr3_2:20908204-20908223 None:intergenic 30.0%
! ACAGACTTGTGTAAAACTTT+TGG + chr3_2:20908261-20908280 Msa0398850:intron 30.0%
ACTCATATGGTAAAAGACTA+AGG + chr3_2:20908296-20908315 Msa0398850:intron 30.0%
!! ACATTTAATTTGCTCAGAAG+CGG + chr3_2:20908321-20908340 Msa0398850:intron 30.0%
! CAGGAATCTTTAGGAAAAAA+AGG + chr3_2:20908410-20908429 Msa0398850:intron 30.0%
!! ATGCTTTGTTTAAATAGGTC+TGG - chr3_2:20908629-20908648 None:intergenic 30.0%
!! TTTTTGGGAAAATTCTATGG+TGG + chr3_2:20908679-20908698 Msa0398850:intron 30.0%
TGTGTGTTCTATCAAAACAA+AGG - chr3_2:20908896-20908915 None:intergenic 30.0%
!! TCTCTACGATAATTTTCAAG+TGG + chr3_2:20909006-20909025 Msa0398850:intron 30.0%
! ACTTTTCTCACCAAAAAAAC+AGG - chr3_2:20909048-20909067 None:intergenic 30.0%
CTATCAACAATAGAGAAACT+TGG + chr3_2:20909261-20909280 Msa0398850:CDS 30.0%
GGAACAAGATAAACAAACAA+AGG - chr3_2:20909390-20909409 None:intergenic 30.0%
AACCTCGACAATATTATCTT+CGG - chr3_2:20909412-20909431 None:intergenic 30.0%
!! GATGATGATAATTGATGATG+AGG - chr3_2:20907676-20907695 None:intergenic 30.0%
! TCATAAGCAATGATAATGAG+TGG - chr3_2:20907698-20907717 None:intergenic 30.0%
! ACTTATGATGATGACAATGA+AGG + chr3_2:20907770-20907789 Msa0398850:exon 30.0%
!! TCATCAAAGAGCATTAAAAC+TGG - chr3_2:20908171-20908190 None:intergenic 30.0%
! TGCTCTTTGATGATATGATA+TGG + chr3_2:20908178-20908197 Msa0398850:intron 30.0%
ATTACGGTTTATGTATACCT+AGG - chr3_2:20908204-20908223 None:intergenic 30.0%
! ACAGACTTGTGTAAAACTTT+TGG + chr3_2:20908261-20908280 Msa0398850:intron 30.0%
ACTCATATGGTAAAAGACTA+AGG + chr3_2:20908296-20908315 Msa0398850:intron 30.0%
!! ACATTTAATTTGCTCAGAAG+CGG + chr3_2:20908321-20908340 Msa0398850:intron 30.0%
! CAGGAATCTTTAGGAAAAAA+AGG + chr3_2:20908410-20908429 Msa0398850:intron 30.0%
!! ATGCTTTGTTTAAATAGGTC+TGG - chr3_2:20908629-20908648 None:intergenic 30.0%
!! TTTTTGGGAAAATTCTATGG+TGG + chr3_2:20908679-20908698 Msa0398850:intron 30.0%
TGTGTGTTCTATCAAAACAA+AGG - chr3_2:20908896-20908915 None:intergenic 30.0%
!! TCTCTACGATAATTTTCAAG+TGG + chr3_2:20909006-20909025 Msa0398850:intron 30.0%
! ACTTTTCTCACCAAAAAAAC+AGG - chr3_2:20909048-20909067 None:intergenic 30.0%
CTATCAACAATAGAGAAACT+TGG + chr3_2:20909261-20909280 Msa0398850:CDS 30.0%
GGAACAAGATAAACAAACAA+AGG - chr3_2:20909390-20909409 None:intergenic 30.0%
AACCTCGACAATATTATCTT+CGG - chr3_2:20909412-20909431 None:intergenic 30.0%
CACAATAGAAAACCAATCCA+TGG + chr3_2:20907639-20907658 Msa0398850:five_prime_UTR 35.0%
! TTGATGATATGATATGGCCT+AGG + chr3_2:20908184-20908203 Msa0398850:intron 35.0%
! ACTTGTGTAAAACTTTTGGC+CGG + chr3_2:20908265-20908284 Msa0398850:intron 35.0%
ACCATATGAGTTGTACTTAC+CGG - chr3_2:20908287-20908306 None:intergenic 35.0%
!! CATTTAATTTGCTCAGAAGC+GGG + chr3_2:20908322-20908341 Msa0398850:intron 35.0%
!! ACACAAAGTGTTGAGAAGTA+GGG - chr3_2:20908363-20908382 None:intergenic 35.0%
! GTTTTGTAGCAGGAATCTTT+AGG + chr3_2:20908401-20908420 Msa0398850:intron 35.0%
TTTAAGTAGGCTAATACGTC+AGG + chr3_2:20908522-20908541 Msa0398850:intron 35.0%
! TAGTACTTGTCAGACCTTTT+CGG - chr3_2:20908551-20908570 None:intergenic 35.0%
GGTCTGACAAGTACTAAAAA+TGG + chr3_2:20908555-20908574 Msa0398850:intron 35.0%
GTACTATGAGTCATAGTTTC+AGG - chr3_2:20908749-20908768 None:intergenic 35.0%
CTATGACTCATAGTACTTGT+TGG + chr3_2:20908753-20908772 Msa0398850:intron 35.0%
TCTCACTCATTAAGACAAAG+AGG - chr3_2:20908796-20908815 None:intergenic 35.0%
CTTTGTCTTAATGAGTGAGA+CGG + chr3_2:20908796-20908815 Msa0398850:intron 35.0%
! TGTTGCTGTTATAGGTGATA+CGG - chr3_2:20908931-20908950 None:intergenic 35.0%
! ACAGTCATTGTTGCTGTTAT+AGG - chr3_2:20908939-20908958 None:intergenic 35.0%
!! CATCGGTTGTTACTTGTTAT+TGG + chr3_2:20908981-20909000 Msa0398850:intron 35.0%
!! AAAAAAACAGGCTGGTTCTA+CGG - chr3_2:20909036-20909055 None:intergenic 35.0%
AATTCAACTGTATTCCCACT+TGG + chr3_2:20909108-20909127 Msa0398850:CDS 35.0%
ATTCAACTGTATTCCCACTT+GGG + chr3_2:20909109-20909128 Msa0398850:CDS 35.0%
CATTCTTGTGAGGAGTTTAA+CGG - chr3_2:20909169-20909188 None:intergenic 35.0%
TGATAAAACACCGAGTTCTT+CGG - chr3_2:20909301-20909320 None:intergenic 35.0%
ACCTCGACAATATTATCTTC+GGG - chr3_2:20909411-20909430 None:intergenic 35.0%
GAAGATAATATTGTCGAGGT+TGG + chr3_2:20909411-20909430 Msa0398850:CDS 35.0%
CACAATAGAAAACCAATCCA+TGG + chr3_2:20907639-20907658 Msa0398850:five_prime_UTR 35.0%
! TTGATGATATGATATGGCCT+AGG + chr3_2:20908184-20908203 Msa0398850:intron 35.0%
! ACTTGTGTAAAACTTTTGGC+CGG + chr3_2:20908265-20908284 Msa0398850:intron 35.0%
ACCATATGAGTTGTACTTAC+CGG - chr3_2:20908287-20908306 None:intergenic 35.0%
!! CATTTAATTTGCTCAGAAGC+GGG + chr3_2:20908322-20908341 Msa0398850:intron 35.0%
!! ACACAAAGTGTTGAGAAGTA+GGG - chr3_2:20908363-20908382 None:intergenic 35.0%
! GTTTTGTAGCAGGAATCTTT+AGG + chr3_2:20908401-20908420 Msa0398850:intron 35.0%
TTTAAGTAGGCTAATACGTC+AGG + chr3_2:20908522-20908541 Msa0398850:intron 35.0%
! TAGTACTTGTCAGACCTTTT+CGG - chr3_2:20908551-20908570 None:intergenic 35.0%
GGTCTGACAAGTACTAAAAA+TGG + chr3_2:20908555-20908574 Msa0398850:intron 35.0%
GTACTATGAGTCATAGTTTC+AGG - chr3_2:20908749-20908768 None:intergenic 35.0%
CTATGACTCATAGTACTTGT+TGG + chr3_2:20908753-20908772 Msa0398850:intron 35.0%
TCTCACTCATTAAGACAAAG+AGG - chr3_2:20908796-20908815 None:intergenic 35.0%
CTTTGTCTTAATGAGTGAGA+CGG + chr3_2:20908796-20908815 Msa0398850:intron 35.0%
! TGTTGCTGTTATAGGTGATA+CGG - chr3_2:20908931-20908950 None:intergenic 35.0%
! ACAGTCATTGTTGCTGTTAT+AGG - chr3_2:20908939-20908958 None:intergenic 35.0%
!! CATCGGTTGTTACTTGTTAT+TGG + chr3_2:20908981-20909000 Msa0398850:intron 35.0%
!! AAAAAAACAGGCTGGTTCTA+CGG - chr3_2:20909036-20909055 None:intergenic 35.0%
AATTCAACTGTATTCCCACT+TGG + chr3_2:20909108-20909127 Msa0398850:CDS 35.0%
ATTCAACTGTATTCCCACTT+GGG + chr3_2:20909109-20909128 Msa0398850:CDS 35.0%
CATTCTTGTGAGGAGTTTAA+CGG - chr3_2:20909169-20909188 None:intergenic 35.0%
TGATAAAACACCGAGTTCTT+CGG - chr3_2:20909301-20909320 None:intergenic 35.0%
ACCTCGACAATATTATCTTC+GGG - chr3_2:20909411-20909430 None:intergenic 35.0%
GAAGATAATATTGTCGAGGT+TGG + chr3_2:20909411-20909430 Msa0398850:CDS 35.0%
GTAGAATAGTGACCATGGAT+TGG - chr3_2:20907654-20907673 None:intergenic 40.0%
ATGAGGTAGAATAGTGACCA+TGG - chr3_2:20907659-20907678 None:intergenic 40.0%
GATCAAGCTGTTACTACAGA+TGG - chr3_2:20907805-20907824 None:intergenic 40.0%
!! AGAGTTTTGTGTTGAAGGAG+AGG - chr3_2:20907835-20907854 None:intergenic 40.0%
!! GTGTGAGAGTTTTGTGTTGA+AGG - chr3_2:20907840-20907859 None:intergenic 40.0%
! TCACACTTTCTCACCTTTTC+TGG + chr3_2:20907854-20907873 Msa0398850:CDS 40.0%
!! ACCTTTTCTGGTCAAATCCA+TGG + chr3_2:20907866-20907885 Msa0398850:CDS 40.0%
!!! GTTTTAGAGACAGATGGAAC+TGG - chr3_2:20907903-20907922 None:intergenic 40.0%
!!! GCTACAGTTTTAGAGACAGA+TGG - chr3_2:20907909-20907928 None:intergenic 40.0%
! AGTGTTGAGAAGTAGGGAAT+CGG - chr3_2:20908357-20908376 None:intergenic 40.0%
!! CACACAAAGTGTTGAGAAGT+AGG - chr3_2:20908364-20908383 None:intergenic 40.0%
!!! GTAGAACCAGCCTGTTTTTT+TGG + chr3_2:20909035-20909054 Msa0398850:intron 40.0%
TTCTCACCAAAAAAACAGGC+TGG - chr3_2:20909044-20909063 None:intergenic 40.0%
TTCAACTGTATTCCCACTTG+GGG + chr3_2:20909110-20909129 Msa0398850:CDS 40.0%
CGTTAAACTCCTCACAAGAA+TGG + chr3_2:20909167-20909186 Msa0398850:CDS 40.0%
TCAGTTGTTCCATTCTTGTG+AGG - chr3_2:20909179-20909198 None:intergenic 40.0%
ACAACTGAGACTGTTAACCA+AGG + chr3_2:20909191-20909210 Msa0398850:CDS 40.0%
TAGCGATAATCCTGCTTTCT+CGG - chr3_2:20909244-20909263 None:intergenic 40.0%
TCCCGAAGATAATATTGTCG+AGG + chr3_2:20909407-20909426 Msa0398850:CDS 40.0%
TATTGTCGAGGTTGGATTAC+AGG + chr3_2:20909419-20909438 Msa0398850:CDS 40.0%
GTAGAATAGTGACCATGGAT+TGG - chr3_2:20907654-20907673 None:intergenic 40.0%
ATGAGGTAGAATAGTGACCA+TGG - chr3_2:20907659-20907678 None:intergenic 40.0%
GATCAAGCTGTTACTACAGA+TGG - chr3_2:20907805-20907824 None:intergenic 40.0%
!! AGAGTTTTGTGTTGAAGGAG+AGG - chr3_2:20907835-20907854 None:intergenic 40.0%
!! GTGTGAGAGTTTTGTGTTGA+AGG - chr3_2:20907840-20907859 None:intergenic 40.0%
! TCACACTTTCTCACCTTTTC+TGG + chr3_2:20907854-20907873 Msa0398850:CDS 40.0%
!! ACCTTTTCTGGTCAAATCCA+TGG + chr3_2:20907866-20907885 Msa0398850:CDS 40.0%
!!! GTTTTAGAGACAGATGGAAC+TGG - chr3_2:20907903-20907922 None:intergenic 40.0%
!!! GCTACAGTTTTAGAGACAGA+TGG - chr3_2:20907909-20907928 None:intergenic 40.0%
! AGTGTTGAGAAGTAGGGAAT+CGG - chr3_2:20908357-20908376 None:intergenic 40.0%
!! CACACAAAGTGTTGAGAAGT+AGG - chr3_2:20908364-20908383 None:intergenic 40.0%
!!! GTAGAACCAGCCTGTTTTTT+TGG + chr3_2:20909035-20909054 Msa0398850:intron 40.0%
TTCTCACCAAAAAAACAGGC+TGG - chr3_2:20909044-20909063 None:intergenic 40.0%
TTCAACTGTATTCCCACTTG+GGG + chr3_2:20909110-20909129 Msa0398850:CDS 40.0%
CGTTAAACTCCTCACAAGAA+TGG + chr3_2:20909167-20909186 Msa0398850:CDS 40.0%
TCAGTTGTTCCATTCTTGTG+AGG - chr3_2:20909179-20909198 None:intergenic 40.0%
ACAACTGAGACTGTTAACCA+AGG + chr3_2:20909191-20909210 Msa0398850:CDS 40.0%
TAGCGATAATCCTGCTTTCT+CGG - chr3_2:20909244-20909263 None:intergenic 40.0%
TCCCGAAGATAATATTGTCG+AGG + chr3_2:20909407-20909426 Msa0398850:CDS 40.0%
TATTGTCGAGGTTGGATTAC+AGG + chr3_2:20909419-20909438 Msa0398850:CDS 40.0%
GTTACTACAGATGGATGCTG+AGG - chr3_2:20907796-20907815 None:intergenic 45.0%
GCCATGGATTTGACCAGAAA+AGG - chr3_2:20907870-20907889 None:intergenic 45.0%
! GAGACAGATGGAACTGGTTT+GGG - chr3_2:20907897-20907916 None:intergenic 45.0%
AGAGACAGATGGAACTGGTT+TGG - chr3_2:20907898-20907917 None:intergenic 45.0%
GCCGGTAAGTACAACTCATA+TGG + chr3_2:20908283-20908302 Msa0398850:intron 45.0%
GTGTTGAGAAGTAGGGAATC+GGG - chr3_2:20908356-20908375 None:intergenic 45.0%
!! GTGAGTGTGAGTTTTGTAGC+AGG + chr3_2:20908391-20908410 Msa0398850:intron 45.0%
! TACTTGTCAGACCTTTTCGG+AGG - chr3_2:20908548-20908567 None:intergenic 45.0%
CTATGGTGGTCCACTTAGAT+AGG + chr3_2:20908693-20908712 Msa0398850:intron 45.0%
TCCACTTAGATAGGTGTCCA+CGG + chr3_2:20908702-20908721 Msa0398850:intron 45.0%
AGGTGATACGGTGACTTGAT+TGG - chr3_2:20908919-20908938 None:intergenic 45.0%
TCTACTTCCAAGAGCGACAT+CGG + chr3_2:20908964-20908983 Msa0398850:intron 45.0%
TTAACCAAGGCAGAGAAAGC+AGG + chr3_2:20909204-20909223 Msa0398850:CDS 45.0%
TAAACCTGCTTTCTCTGCCT+TGG - chr3_2:20909211-20909230 None:intergenic 45.0%
CTCTCAAAAGCCGAAGAACT+CGG + chr3_2:20909288-20909307 Msa0398850:CDS 45.0%
AAGAGTGATCCTGGAGTTGA+TGG - chr3_2:20909336-20909355 None:intergenic 45.0%
ATTACAGGCTGTGGTTGCTT+TGG + chr3_2:20909434-20909453 Msa0398850:CDS 45.0%
! GTTGCTTTGGTCTGTGTTGT+TGG + chr3_2:20909447-20909466 Msa0398850:CDS 45.0%
GTTACTACAGATGGATGCTG+AGG - chr3_2:20907796-20907815 None:intergenic 45.0%
GCCATGGATTTGACCAGAAA+AGG - chr3_2:20907870-20907889 None:intergenic 45.0%
! GAGACAGATGGAACTGGTTT+GGG - chr3_2:20907897-20907916 None:intergenic 45.0%
AGAGACAGATGGAACTGGTT+TGG - chr3_2:20907898-20907917 None:intergenic 45.0%
GCCGGTAAGTACAACTCATA+TGG + chr3_2:20908283-20908302 Msa0398850:intron 45.0%
GTGTTGAGAAGTAGGGAATC+GGG - chr3_2:20908356-20908375 None:intergenic 45.0%
!! GTGAGTGTGAGTTTTGTAGC+AGG + chr3_2:20908391-20908410 Msa0398850:intron 45.0%
! TACTTGTCAGACCTTTTCGG+AGG - chr3_2:20908548-20908567 None:intergenic 45.0%
CTATGGTGGTCCACTTAGAT+AGG + chr3_2:20908693-20908712 Msa0398850:intron 45.0%
TCCACTTAGATAGGTGTCCA+CGG + chr3_2:20908702-20908721 Msa0398850:intron 45.0%
AGGTGATACGGTGACTTGAT+TGG - chr3_2:20908919-20908938 None:intergenic 45.0%
TCTACTTCCAAGAGCGACAT+CGG + chr3_2:20908964-20908983 Msa0398850:intron 45.0%
TTAACCAAGGCAGAGAAAGC+AGG + chr3_2:20909204-20909223 Msa0398850:CDS 45.0%
TAAACCTGCTTTCTCTGCCT+TGG - chr3_2:20909211-20909230 None:intergenic 45.0%
CTCTCAAAAGCCGAAGAACT+CGG + chr3_2:20909288-20909307 Msa0398850:CDS 45.0%
AAGAGTGATCCTGGAGTTGA+TGG - chr3_2:20909336-20909355 None:intergenic 45.0%
ATTACAGGCTGTGGTTGCTT+TGG + chr3_2:20909434-20909453 Msa0398850:CDS 45.0%
! GTTGCTTTGGTCTGTGTTGT+TGG + chr3_2:20909447-20909466 Msa0398850:CDS 45.0%
!! TAATAATTAAATTATTGAAA+AGG - chr3_2:20908471-20908490 None:intergenic 5.0%
!! TAATAATTAAATTATTGAAA+AGG - chr3_2:20908471-20908490 None:intergenic 5.0%
!! AACTGGTTTGGGAGTAGCCA+TGG - chr3_2:20907886-20907905 None:intergenic 50.0%
AATACGTCAGGCCTCCGAAA+AGG + chr3_2:20908534-20908553 Msa0398850:intron 50.0%
ACCGTGGACACCTATCTAAG+TGG - chr3_2:20908706-20908725 None:intergenic 50.0%
ACTTAGATAGGTGTCCACGG+TGG + chr3_2:20908705-20908724 Msa0398850:intron 50.0%
!! TTTCAAGCGTTGATCCACCG+TGG - chr3_2:20908722-20908741 None:intergenic 50.0%
GTAACAACCGATGTCGCTCT+TGG - chr3_2:20908974-20908993 None:intergenic 50.0%
TCCTAGGTTGTTCCCCAAGT+GGG - chr3_2:20909125-20909144 None:intergenic 50.0%
GTCGATGTTACAGCACTCCT+AGG - chr3_2:20909141-20909160 None:intergenic 50.0%
CGATAATCCTGCTTTCTCGG+CGG - chr3_2:20909241-20909260 None:intergenic 50.0%
! CGAGTTCTTCGGCTTTTGAG+AGG - chr3_2:20909290-20909309 None:intergenic 50.0%
GCTACTGATCCATCAACTCC+AGG + chr3_2:20909324-20909343 Msa0398850:CDS 50.0%
CTGAGTGTGAAGAGTGATCC+TGG - chr3_2:20909345-20909364 None:intergenic 50.0%
! GCTTTGGTCTGTGTTGTTGG+TGG + chr3_2:20909450-20909469 Msa0398850:CDS 50.0%
!! TGTGTTGTTGGTGGTTCTGC+TGG + chr3_2:20909459-20909478 Msa0398850:CDS 50.0%
!! AACTGGTTTGGGAGTAGCCA+TGG - chr3_2:20907886-20907905 None:intergenic 50.0%
AATACGTCAGGCCTCCGAAA+AGG + chr3_2:20908534-20908553 Msa0398850:intron 50.0%
ACCGTGGACACCTATCTAAG+TGG - chr3_2:20908706-20908725 None:intergenic 50.0%
ACTTAGATAGGTGTCCACGG+TGG + chr3_2:20908705-20908724 Msa0398850:intron 50.0%
!! TTTCAAGCGTTGATCCACCG+TGG - chr3_2:20908722-20908741 None:intergenic 50.0%
GTAACAACCGATGTCGCTCT+TGG - chr3_2:20908974-20908993 None:intergenic 50.0%
TCCTAGGTTGTTCCCCAAGT+GGG - chr3_2:20909125-20909144 None:intergenic 50.0%
GTCGATGTTACAGCACTCCT+AGG - chr3_2:20909141-20909160 None:intergenic 50.0%
CGATAATCCTGCTTTCTCGG+CGG - chr3_2:20909241-20909260 None:intergenic 50.0%
! CGAGTTCTTCGGCTTTTGAG+AGG - chr3_2:20909290-20909309 None:intergenic 50.0%
GCTACTGATCCATCAACTCC+AGG + chr3_2:20909324-20909343 Msa0398850:CDS 50.0%
CTGAGTGTGAAGAGTGATCC+TGG - chr3_2:20909345-20909364 None:intergenic 50.0%
! GCTTTGGTCTGTGTTGTTGG+TGG + chr3_2:20909450-20909469 Msa0398850:CDS 50.0%
!! TGTGTTGTTGGTGGTTCTGC+TGG + chr3_2:20909459-20909478 Msa0398850:CDS 50.0%
GAGTGAGACGGTGACTCGAT+TGG + chr3_2:20908808-20908827 Msa0398850:intron 55.0%
TCCCACTTGGGGAACAACCT+AGG + chr3_2:20909121-20909140 Msa0398850:CDS 55.0%
CTCCTAGGTTGTTCCCCAAG+TGG - chr3_2:20909126-20909145 None:intergenic 55.0%
TTATCAGCCGCCGAGAAAGC+AGG + chr3_2:20909231-20909250 Msa0398850:CDS 55.0%
CGAGGTTGGATTACAGGCTG+TGG + chr3_2:20909425-20909444 Msa0398850:CDS 55.0%
!!! GGTGGTTCTGCTGGTTTTGC+TGG + chr3_2:20909468-20909487 Msa0398850:CDS 55.0%
GAGTGAGACGGTGACTCGAT+TGG + chr3_2:20908808-20908827 Msa0398850:intron 55.0%
TCCCACTTGGGGAACAACCT+AGG + chr3_2:20909121-20909140 Msa0398850:CDS 55.0%
CTCCTAGGTTGTTCCCCAAG+TGG - chr3_2:20909126-20909145 None:intergenic 55.0%
TTATCAGCCGCCGAGAAAGC+AGG + chr3_2:20909231-20909250 Msa0398850:CDS 55.0%
CGAGGTTGGATTACAGGCTG+TGG + chr3_2:20909425-20909444 Msa0398850:CDS 55.0%
!!! GGTGGTTCTGCTGGTTTTGC+TGG + chr3_2:20909468-20909487 Msa0398850:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 20907633 20909741 20907633 ID=Msa0398850;Name=Msa0398850
chr3_2 mRNA 20907633 20909741 20907633 ID=Msa0398850-mRNA-1;Parent=Msa0398850;Name=Msa0398850-mRNA-1;_AED=0.00;_eAED=0.00;_QI=141|1|1|1|1|1|2|214|194
chr3_2 exon 20907633 20907938 20907633 ID=Msa0398850-mRNA-1:exon:4575;Parent=Msa0398850-mRNA-1
chr3_2 exon 20909108 20909741 20909108 ID=Msa0398850-mRNA-1:exon:4576;Parent=Msa0398850-mRNA-1
chr3_2 five_prime_UTR 20907633 20907773 20907633 ID=Msa0398850-mRNA-1:five_prime_utr;Parent=Msa0398850-mRNA-1
chr3_2 CDS 20907774 20907938 20907774 ID=Msa0398850-mRNA-1:cds;Parent=Msa0398850-mRNA-1
chr3_2 CDS 20909108 20909527 20909108 ID=Msa0398850-mRNA-1:cds;Parent=Msa0398850-mRNA-1
chr3_2 three_prime_UTR 20909528 20909741 20909528 ID=Msa0398850-mRNA-1:three_prime_utr;Parent=Msa0398850-mRNA-1
Gene Sequence

>Msa0398850

ATGATGATGACAATGAAGGCCTCAGCATCCATCTGTAGTAACAGCTTGATCTTCTACTCCTCTCCTTCAACACAAAACTCTCACACTTTCTCACCTTTTCTGGTCAAATCCATGGCTACTCCCAAACCAGTTCCATCTGTCTCTAAAACTGTAGCTTCTAAAAAGAATTCAACTGTATTCCCACTTGGGGAACAACCTAGGAGTGCTGTAACATCGACACAATCCGTTAAACTCCTCACAAGAATGGAACAACTGAGACTGTTAACCAAGGCAGAGAAAGCAGGTTTATTATCAGCCGCCGAGAAAGCAGGATTATCGCTATCAACAATAGAGAAACTTGGTCTCCTCTCAAAAGCCGAAGAACTCGGTGTTTTATCAGCTGCTACTGATCCATCAACTCCAGGATCACTCTTCACACTCAGCTTTGTTTTACTTCTTTTAGGTCCTTTGTTTGTTTATCTTGTTCCCGAAGATAATATTGTCGAGGTTGGATTACAGGCTGTGGTTGCTTTGGTCTGTGTTGTTGGTGGTTCTGCTGGTTTTGCTGGTTCAAGTTTTGTATCCAACTTGCAGAAAATAAAATAA

Protein sequence

>Msa0398850

MMMTMKASASICSNSLIFYSSPSTQNSHTFSPFLVKSMATPKPVPSVSKTVASKKNSTVFPLGEQPRSAVTSTQSVKLLTRMEQLRLLTKAEKAGLLSAAEKAGLSLSTIEKLGLLSKAEELGVLSAATDPSTPGSLFTLSFVLLLLGPLFVYLVPEDNIVEVGLQAVVALVCVVGGSAGFAGSSFVSNLQKIK*