AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0625310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625310 MtrunA17_Chr4g0000321 89.964 279 20 3 1 278 1 272 1.33e-180 498
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625310 AT2G46910.1 70.518 251 67 3 34 277 32 282 4.20e-122 350

Find 81 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATATTATCTGAGTTATT+TGG 0.204203 4_3:+4327034 Msa0625310:CDS
TTTGGATGATAATATGCTTT+TGG 0.254717 4_3:+4327052 Msa0625310:CDS
TCCAACTTGTTAAAATCAAT+TGG 0.289643 4_3:-4324428 None:intergenic
GGAATTACCTCAAACAAATT+AGG 0.299344 4_3:-4324718 None:intergenic
ATAATGTGTTCTTTAATTGC+TGG 0.306537 4_3:-4327434 None:intergenic
GAAACTGAAGGTAAATATTT+CGG 0.318032 4_3:-4326097 None:intergenic
ATAAGCCGTGGTTGAGGAAT+TGG 0.329110 4_3:+4327193 Msa0625310:three_prime_UTR
GGAATTCTCATCATTGTATA+AGG 0.343085 4_3:+4327260 Msa0625310:three_prime_UTR
AGAGTCCTCTTTGTGTGTCT+TGG 0.357425 4_3:-4324241 None:intergenic
AAAGATCGTGGTAGTATTGC+TGG 0.362518 4_3:-4326607 None:intergenic
CAATTTCCCGTGAGGGATCC+TGG 0.375960 4_3:+4326910 Msa0625310:CDS
TTGAGTTGGAGAAATGGATT+TGG 0.379150 4_3:+4323934 Msa0625310:exon
CACCACTATGCATTAATAAT+AGG 0.383426 4_3:+4323993 Msa0625310:CDS
GGCCGTGCTGTTGGTGGAGG+AGG 0.385119 4_3:+4327074 Msa0625310:CDS
TAAGCTTCTCGTTCCTTCTC+TGG 0.389022 4_3:-4323902 None:intergenic
CATTGTAACTGTAGAGTGTA+TGG 0.400357 4_3:-4324021 None:intergenic
GAGAATTCCTTGTGGACTAT+AGG 0.403316 4_3:-4327246 None:intergenic
CCATCATATATATACCTTCC+AGG 0.410693 4_3:-4326928 None:intergenic
TTGGGCCGTGCTGTTGGTGG+AGG 0.425794 4_3:+4327071 Msa0625310:CDS
GCTTAGCTTGGCAGTTGAGT+TGG 0.428513 4_3:+4323920 Msa0625310:five_prime_UTR
GAGCATTCCTAATTTGTTTG+AGG 0.430425 4_3:+4324711 Msa0625310:CDS
TGGAAGAGAATGAGAACATC+AGG 0.437458 4_3:-4324482 None:intergenic
TGGCAGTTGAGTTGGAGAAA+TGG 0.444921 4_3:+4323928 Msa0625310:exon
ACAGTTACAATGTTAATAGA+AGG 0.448234 4_3:+4324032 Msa0625310:CDS
TCTTCAACGTTCTTCTATTG+AGG 0.448829 4_3:+4324274 Msa0625310:CDS
CCAACTTGTTAAAATCAATT+GGG 0.453481 4_3:-4324427 None:intergenic
TTAACAAGTTGGATGGAACT+TGG 0.462758 4_3:+4324438 Msa0625310:CDS
ATAAGGCAATAATATGCTAT+TGG 0.468591 4_3:+4327277 Msa0625310:three_prime_UTR
CTCCTATTATTAATGCATAG+TGG 0.475506 4_3:-4323995 None:intergenic
GACCGATACAAGAGTGAACT+TGG 0.486559 4_3:-4326075 None:intergenic
CACTCGATAAGCCGTGGTTG+AGG 0.492755 4_3:+4327187 Msa0625310:three_prime_UTR
GGATACAGTACTTGAAAGAA+AGG 0.499312 4_3:-4324521 None:intergenic
AGATTGCATAGCCATGGAAA+TGG 0.503286 4_3:-4324065 None:intergenic
CAAAGAACGCCGCGAGCGTA+AGG 0.505693 4_3:+4323873 Msa0625310:five_prime_UTR
TGGTTGAGGAATTGGACATA+TGG 0.507094 4_3:+4327201 Msa0625310:three_prime_UTR
TTATTCGCAATGTTGTCCGC+TGG 0.516151 4_3:+4324689 Msa0625310:CDS
CAAAGCTCAATTTCCCGTGA+GGG 0.519679 4_3:+4326903 Msa0625310:CDS
AAATATTAGTGAACAACTGC+AGG 0.525549 4_3:+4326573 Msa0625310:CDS
TATGCAATCTGCTGTTACCC+AGG 0.526237 4_3:+4324078 Msa0625310:CDS
ATTGCGAATAACACCTCCAT+TGG 0.531951 4_3:-4324677 None:intergenic
AAGGAAGAGTAGCAGCAGCT+TGG 0.537516 4_3:-4324502 None:intergenic
CACCTCCATTGGAGCTATGA+CGG 0.538545 4_3:-4324666 None:intergenic
TGCCAAGTTCACTCTTGTAT+CGG 0.542599 4_3:+4326073 Msa0625310:CDS
ATGGAGAGGAAGAAATAGAC+TGG 0.545081 4_3:+4327220 Msa0625310:three_prime_UTR
GGAACAAGAAGGTGCTACAT+TGG 0.551537 4_3:+4326043 Msa0625310:intron
GAAATCAAAATCCATTTCCA+TGG 0.552738 4_3:+4324054 Msa0625310:CDS
AACAGCAGATTGCATAGCCA+TGG 0.553271 4_3:-4324071 None:intergenic
CGTAAGGAGTGTACCAGAGA+AGG 0.555677 4_3:+4323889 Msa0625310:five_prime_UTR
GTCAGGTGAATGTGGAAGGA+AGG 0.565736 4_3:+4324393 Msa0625310:intron
TTCTGTCAGGTGAATGTGGA+AGG 0.566123 4_3:+4324389 Msa0625310:intron
TACCTTCCAGGATCCCTCAC+GGG 0.569268 4_3:-4326916 None:intergenic
CTACTTCTGTCAGGTGAATG+TGG 0.570625 4_3:+4324385 Msa0625310:intron
TTGGATTGTAGGGAATCAGT+AGG 0.573551 4_3:+4327008 Msa0625310:intron
GATTGTAGGGAATCAGTAGG+AGG 0.575346 4_3:+4327011 Msa0625310:intron
AAGGAACGAGAAGCTTAGCT+TGG 0.578059 4_3:+4323908 Msa0625310:five_prime_UTR
GAAATTGAGCTTTGAAAGCA+CGG 0.585966 4_3:-4326894 None:intergenic
GAATGTGGAAGGAAGGAACA+TGG 0.586118 4_3:+4324400 Msa0625310:CDS
TCAATAGAAGAACGTTGAAG+AGG 0.588804 4_3:-4324272 None:intergenic
GAATGCCGTCATAGCTCCAA+TGG 0.593991 4_3:+4324661 Msa0625310:CDS
TGATTACCTCTTGAAACTGA+AGG 0.594547 4_3:-4326109 None:intergenic
TATTTACCTTCAGTTTCAAG+AGG 0.595839 4_3:+4326103 Msa0625310:CDS
ATTATTTGAGCTGTGAATTG+TGG 0.600446 4_3:+4327452 Msa0625310:three_prime_UTR
TTCCCGTGAGGGATCCTGGA+AGG 0.606634 4_3:+4326914 Msa0625310:CDS
CTGGAGGCCTATAGTCCACA+AGG 0.607285 4_3:+4327239 Msa0625310:three_prime_UTR
ATACCTTCCAGGATCCCTCA+CGG 0.609419 4_3:-4326917 None:intergenic
TTATTAATGCATAGTGGTGG+TGG 0.610336 4_3:-4323989 None:intergenic
ACAAATTAGGAATGCTCCAG+CGG 0.613575 4_3:-4324705 None:intergenic
TCTCTCCAAGACACACAAAG+AGG 0.636026 4_3:+4324236 Msa0625310:CDS
TGCAAACTTATAAAAGATCG+TGG 0.636201 4_3:-4326619 None:intergenic
TCAAAGCTCAATTTCCCGTG+AGG 0.649088 4_3:+4326902 Msa0625310:CDS
TGGTACACTCCTTACGCTCG+CGG 0.649440 4_3:-4323882 None:intergenic
GAGGAATTGGACATATGGAG+AGG 0.653797 4_3:+4327206 Msa0625310:three_prime_UTR
CTATTATTAATGCATAGTGG+TGG 0.657145 4_3:-4323992 None:intergenic
AATGTGGAAGGAAGGAACAT+GGG 0.663999 4_3:+4324401 Msa0625310:CDS
CTCCTCCTCCACCAACAGCA+CGG 0.664017 4_3:-4327076 None:intergenic
TGCCGTCATAGCTCCAATGG+AGG 0.669650 4_3:+4324664 Msa0625310:CDS
CAGTAACACTCGATAAGCCG+TGG 0.675508 4_3:+4327181 Msa0625310:three_prime_UTR
TATGTCCAATTCCTCAACCA+CGG 0.683624 4_3:-4327198 None:intergenic
ACATTGGTGCAGGAACAAGA+AGG 0.688213 4_3:+4326032 Msa0625310:intron
ACAATGATGAGAATTCCTTG+TGG 0.696408 4_3:-4327254 None:intergenic
GAGAGGAAGAAATAGACTGG+AGG 0.707122 4_3:+4327223 Msa0625310:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAACATGTAAAAAAA+TGG + chr4_3:4325819-4325838 Msa0625310:intron 10.0%
!! ATATAATAAAATATGGAAAT+GGG - chr4_3:4326311-4326330 None:intergenic 10.0%
!! AAGAAAGTGAAAAATAAAAA+TGG - chr4_3:4324598-4324617 None:intergenic 15.0%
!! AATTATATGTTGCAAAATAT+CGG - chr4_3:4326194-4326213 None:intergenic 15.0%
!!! TTCTCTTGTTATTAATTAAA+AGG + chr4_3:4326218-4326237 Msa0625310:intron 15.0%
!! TATAATAAAATATGGAAATG+GGG - chr4_3:4326310-4326329 None:intergenic 15.0%
!! CATATAATAAAATATGGAAA+TGG - chr4_3:4326312-4326331 None:intergenic 15.0%
!!! CATTTCCATATTTTATTATA+TGG + chr4_3:4326310-4326329 Msa0625310:intron 15.0%
!! GTAAACCATATAATAAAATA+TGG - chr4_3:4326318-4326337 None:intergenic 15.0%
!! ATTATATTATCTGAGTTATT+TGG + chr4_3:4327034-4327053 Msa0625310:CDS 15.0%
!! AATAAATAAAAACTGTGTGA+TGG + chr4_3:4323850-4323869 Msa0625310:five_prime_UTR 20.0%
!!! TCATCATTCTTTAATTTTGA+AGG + chr4_3:4324169-4324188 Msa0625310:intron 20.0%
!! AGTAAGAAAGTAAAAAGTAA+AGG - chr4_3:4324742-4324761 None:intergenic 20.0%
!!! TTTCACAGTTTTTATCTTAA+AGG + chr4_3:4325172-4325191 Msa0625310:intron 20.0%
!!! TTCACAGTTTTTATCTTAAA+GGG + chr4_3:4325173-4325192 Msa0625310:intron 20.0%
!! AAATAGTATCATTACTCAAA+AGG + chr4_3:4325220-4325239 Msa0625310:intron 20.0%
!!! CTTGTTATTAATTAAAAGGT+TGG + chr4_3:4326222-4326241 Msa0625310:intron 20.0%
!!! TTTTCTTAATCTTAATGATG+GGG - chr4_3:4326437-4326456 None:intergenic 20.0%
!!! CTTTTCTTAATCTTAATGAT+GGG - chr4_3:4326438-4326457 None:intergenic 20.0%
!! GAATTAATTAGTGTCTTTAT+TGG + chr4_3:4326962-4326981 Msa0625310:intron 20.0%
!!! AATTCATTTTATTTGAAGCT+TGG + chr4_3:4327500-4327519 Msa0625310:three_prime_UTR 20.0%
! ACAGTTACAATGTTAATAGA+AGG + chr4_3:4324032-4324051 Msa0625310:CDS 25.0%
! CTATGTATGCATAATTAGAA+TGG - chr4_3:4324117-4324136 None:intergenic 25.0%
! CATACATAGATAGATTGATT+GGG + chr4_3:4324128-4324147 Msa0625310:intron 25.0%
!!! CCAACTTGTTAAAATCAATT+GGG - chr4_3:4324430-4324449 None:intergenic 25.0%
!!! TCCAACTTGTTAAAATCAAT+TGG - chr4_3:4324431-4324450 None:intergenic 25.0%
!!! ATTGATTTTAACAAGTTGGA+TGG + chr4_3:4324431-4324450 Msa0625310:CDS 25.0%
! AAATGGTAAGAAAGAAAAGA+GGG - chr4_3:4324581-4324600 None:intergenic 25.0%
! AAAATGGTAAGAAAGAAAAG+AGG - chr4_3:4324582-4324601 None:intergenic 25.0%
! AGAATGATCATAGTTAATCT+GGG - chr4_3:4324803-4324822 None:intergenic 25.0%
! AAGAATGATCATAGTTAATC+TGG - chr4_3:4324804-4324823 None:intergenic 25.0%
! GAATAATCAAGTATGAATAG+AGG - chr4_3:4324888-4324907 None:intergenic 25.0%
! TATATAAGTATACTTCATCC+TGG + chr4_3:4325035-4325054 Msa0625310:intron 25.0%
!!! AATCTAGTTCCTTTTATTCT+AGG + chr4_3:4325255-4325274 Msa0625310:intron 25.0%
! AATAATATTCCACTTCTCAA+AGG - chr4_3:4325381-4325400 None:intergenic 25.0%
! GAATATTATTAAGCACTAGA+GGG + chr4_3:4325391-4325410 Msa0625310:intron 25.0%
! TTAGCTCATTAATATCTTCT+AGG + chr4_3:4325551-4325570 Msa0625310:intron 25.0%
!! TAATATCTTCTAGGAGAATT+CGG + chr4_3:4325560-4325579 Msa0625310:intron 25.0%
! ATATCTAAATGTTCTCAAGA+TGG - chr4_3:4325768-4325787 None:intergenic 25.0%
! ACTTAAGCTTAATTAGTTCA+GGG - chr4_3:4325968-4325987 None:intergenic 25.0%
! GAAACTGAAGGTAAATATTT+CGG - chr4_3:4326100-4326119 None:intergenic 25.0%
!! GCATGAACATTTTATTACTT+TGG + chr4_3:4326141-4326160 Msa0625310:intron 25.0%
!! AATCTGATTTGTCATTATGA+TGG + chr4_3:4326391-4326410 Msa0625310:intron 25.0%
!! CCTTTTCTTAATCTTAATGA+TGG - chr4_3:4326439-4326458 None:intergenic 25.0%
! CCATCATTAAGATTAAGAAA+AGG + chr4_3:4326436-4326455 Msa0625310:intron 25.0%
! ACAAATGAGCAATTTATAAC+TGG + chr4_3:4326530-4326549 Msa0625310:intron 25.0%
! AAATGCAACAGATTAAACTA+CGG - chr4_3:4326655-4326674 None:intergenic 25.0%
! TCATAAGTTATTAGTGTCAA+TGG - chr4_3:4326720-4326739 None:intergenic 25.0%
!! TTTGGTGATATATTTGTGAA+CGG + chr4_3:4326765-4326784 Msa0625310:intron 25.0%
!! TTTGGATGATAATATGCTTT+TGG + chr4_3:4327052-4327071 Msa0625310:CDS 25.0%
!! TTGGATGATAATATGCTTTT+GGG + chr4_3:4327053-4327072 Msa0625310:CDS 25.0%
! ATAAGGCAATAATATGCTAT+TGG + chr4_3:4327277-4327296 Msa0625310:three_prime_UTR 25.0%
!!! TATTTGAACTTGCTACTTTT+TGG + chr4_3:4327308-4327327 Msa0625310:three_prime_UTR 25.0%
! ATAATGTGTTCTTTAATTGC+TGG - chr4_3:4327437-4327456 None:intergenic 25.0%
CTATTATTAATGCATAGTGG+TGG - chr4_3:4323995-4324014 None:intergenic 30.0%
CACCACTATGCATTAATAAT+AGG + chr4_3:4323993-4324012 Msa0625310:CDS 30.0%
CTCCTATTATTAATGCATAG+TGG - chr4_3:4323998-4324017 None:intergenic 30.0%
GAAATCAAAATCCATTTCCA+TGG + chr4_3:4324054-4324073 Msa0625310:CDS 30.0%
GCATACATAGATAGATTGAT+TGG + chr4_3:4324127-4324146 Msa0625310:intron 30.0%
ATAATCATTCTACTTCTGTC+AGG + chr4_3:4324376-4324395 Msa0625310:intron 30.0%
!! CCCAATTGATTTTAACAAGT+TGG + chr4_3:4324427-4324446 Msa0625310:CDS 30.0%
AAAGAAAAGAGGGAAAATGA+TGG - chr4_3:4324571-4324590 None:intergenic 30.0%
GGAATTACCTCAAACAAATT+AGG - chr4_3:4324721-4324740 None:intergenic 30.0%
AATCTGGGGAAATCAAAAAT+AGG - chr4_3:4324788-4324807 None:intergenic 30.0%
GAATGATCATAGTTAATCTG+GGG - chr4_3:4324802-4324821 None:intergenic 30.0%
ATAATATTGCGGAAATTGAG+GGG - chr4_3:4324849-4324868 None:intergenic 30.0%
CATAATATTGCGGAAATTGA+GGG - chr4_3:4324850-4324869 None:intergenic 30.0%
CTAAACTGTGCATAATATTG+CGG - chr4_3:4324860-4324879 None:intergenic 30.0%
!!! TTGCTAGGATTTGGTTTTTT+AGG + chr4_3:4324994-4325013 Msa0625310:intron 30.0%
AGTTGTGTAAATTAAAGACC+CGG + chr4_3:4325127-4325146 Msa0625310:intron 30.0%
!! TTAGTTTTTCCAACCATCTA+AGG - chr4_3:4325319-4325338 None:intergenic 30.0%
GATGGTTGGAAAAACTAAAT+TGG + chr4_3:4325321-4325340 Msa0625310:intron 30.0%
GGATGAAATACTTATTCTTG+AGG + chr4_3:4325342-4325361 Msa0625310:intron 30.0%
GGAATATTATTAAGCACTAG+AGG + chr4_3:4325390-4325409 Msa0625310:intron 30.0%
TCTTTGCTCGTAACTTATAT+TGG - chr4_3:4325433-4325452 None:intergenic 30.0%
TAAGTTACGAGCAAAGAAAA+CGG + chr4_3:4325436-4325455 Msa0625310:intron 30.0%
TGACCATATAGAAAACAACT+AGG + chr4_3:4325613-4325632 Msa0625310:intron 30.0%
GACCATATAGAAAACAACTA+GGG + chr4_3:4325614-4325633 Msa0625310:intron 30.0%
!! GGAATTTTGAGAAATCACAA+TGG - chr4_3:4325657-4325676 None:intergenic 30.0%
!! CAGCTTTTAGAAATCAGAAA+GGG - chr4_3:4325890-4325909 None:intergenic 30.0%
!! ACAGCTTTTAGAAATCAGAA+AGG - chr4_3:4325891-4325910 None:intergenic 30.0%
CTTAAGCTTAATTAGTTCAG+GGG - chr4_3:4325967-4325986 None:intergenic 30.0%
CACTTAAGCTTAATTAGTTC+AGG - chr4_3:4325969-4325988 None:intergenic 30.0%
TTCTTTGGTTGAGATAACAT+TGG + chr4_3:4326016-4326035 Msa0625310:intron 30.0%
TATTTACCTTCAGTTTCAAG+AGG + chr4_3:4326103-4326122 Msa0625310:CDS 30.0%
TATCAAAAGCAAATTGAACG+TGG - chr4_3:4326257-4326276 None:intergenic 30.0%
TATTACTCCTCAAGAAATGT+TGG + chr4_3:4326338-4326357 Msa0625310:intron 30.0%
GAGCATAAAACATATATGCT+AGG + chr4_3:4326360-4326379 Msa0625310:intron 30.0%
AAATATTAGTGAACAACTGC+AGG + chr4_3:4326573-4326592 Msa0625310:CDS 30.0%
TGCAAACTTATAAAAGATCG+TGG - chr4_3:4326622-4326641 None:intergenic 30.0%
! ACGATCTTTTATAAGTTTGC+AGG + chr4_3:4326621-4326640 Msa0625310:CDS 30.0%
TCTGCATCAAATCAAAACTT+TGG + chr4_3:4326747-4326766 Msa0625310:intron 30.0%
CATGCAGATATATTACCATT+AGG - chr4_3:4326791-4326810 None:intergenic 30.0%
AATGGTAATATATCTGCATG+AGG + chr4_3:4326791-4326810 Msa0625310:intron 30.0%
! CTGGAAGGTATATATATGAT+GGG + chr4_3:4326929-4326948 Msa0625310:intron 30.0%
! TTACGAGTATAATGCTCTTT+TGG + chr4_3:4326989-4327008 Msa0625310:intron 30.0%
! ATAATGCTCTTTTGGATTGT+AGG + chr4_3:4326997-4327016 Msa0625310:intron 30.0%
! TAATGCTCTTTTGGATTGTA+GGG + chr4_3:4326998-4327017 Msa0625310:intron 30.0%
GGAATTCTCATCATTGTATA+AGG + chr4_3:4327260-4327279 Msa0625310:three_prime_UTR 30.0%
ATTATTTGAGCTGTGAATTG+TGG + chr4_3:4327452-4327471 Msa0625310:three_prime_UTR 30.0%
!! TTGAGTTGGAGAAATGGATT+TGG + chr4_3:4323934-4323953 Msa0625310:exon 35.0%
TTATTAATGCATAGTGGTGG+TGG - chr4_3:4323992-4324011 None:intergenic 35.0%
CATTGTAACTGTAGAGTGTA+TGG - chr4_3:4324024-4324043 None:intergenic 35.0%
TCAATAGAAGAACGTTGAAG+AGG - chr4_3:4324275-4324294 None:intergenic 35.0%
TCTTCAACGTTCTTCTATTG+AGG + chr4_3:4324274-4324293 Msa0625310:CDS 35.0%
! TTAACAAGTTGGATGGAACT+TGG + chr4_3:4324438-4324457 Msa0625310:CDS 35.0%
GGATACAGTACTTGAAAGAA+AGG - chr4_3:4324524-4324543 None:intergenic 35.0%
AAAATGATGGTAAGGAAGGA+AGG - chr4_3:4324558-4324577 None:intergenic 35.0%
AAAGAGGGAAAATGATGGTA+AGG - chr4_3:4324566-4324585 None:intergenic 35.0%
!! GAGCATTCCTAATTTGTTTG+AGG + chr4_3:4324711-4324730 Msa0625310:CDS 35.0%
TAATATTGCGGAAATTGAGG+GGG - chr4_3:4324848-4324867 None:intergenic 35.0%
GCATAATATTGCGGAAATTG+AGG - chr4_3:4324851-4324870 None:intergenic 35.0%
TTCTTTCTTAGAGTTCAAGC+TGG + chr4_3:4324905-4324924 Msa0625310:intron 35.0%
GTTGTGTAAATTAAAGACCC+GGG + chr4_3:4325128-4325147 Msa0625310:intron 35.0%
!! TTTTCCAACCATCTAAGGTT+AGG - chr4_3:4325314-4325333 None:intergenic 35.0%
ATTATTAAGCACTAGAGGGT+TGG + chr4_3:4325395-4325414 Msa0625310:intron 35.0%
AAGTTACGAGCAAAGAAAAC+GGG + chr4_3:4325437-4325456 Msa0625310:intron 35.0%
TCACGCTTATTTGATTCTCA+AGG + chr4_3:4325490-4325509 Msa0625310:intron 35.0%
TATTTGATTCTCAAGGAGCA+TGG + chr4_3:4325497-4325516 Msa0625310:intron 35.0%
AGCTAATGTACTTTCCAAAC+TGG - chr4_3:4325537-4325556 None:intergenic 35.0%
!! CTCCCTAGTTGTTTTCTATA+TGG - chr4_3:4325619-4325638 None:intergenic 35.0%
AAATGTTCTCAAGATGGATG+TGG - chr4_3:4325762-4325781 None:intergenic 35.0%
! CTATATCAAGTTAGCCTCAA+CGG + chr4_3:4325851-4325870 Msa0625310:intron 35.0%
GATTTAAAGATGAACCGTTG+AGG - chr4_3:4325868-4325887 None:intergenic 35.0%
! CAGCTTGAACATGTTTTCTT+TGG + chr4_3:4326001-4326020 Msa0625310:intron 35.0%
TGATTACCTCTTGAAACTGA+AGG - chr4_3:4326112-4326131 None:intergenic 35.0%
TAAAATATGGAAATGGGGCA+TGG - chr4_3:4326305-4326324 None:intergenic 35.0%
TTATGCTCCAACATTTCTTG+AGG - chr4_3:4326348-4326367 None:intergenic 35.0%
TATATTTGTGAACGGCCTAA+TGG + chr4_3:4326773-4326792 Msa0625310:intron 35.0%
!! GAAATTGAGCTTTGAAAGCA+CGG - chr4_3:4326897-4326916 None:intergenic 35.0%
CCATCATATATATACCTTCC+AGG - chr4_3:4326931-4326950 None:intergenic 35.0%
! CCTGGAAGGTATATATATGA+TGG + chr4_3:4326928-4326947 Msa0625310:intron 35.0%
ACAATGATGAGAATTCCTTG+TGG - chr4_3:4327257-4327276 None:intergenic 35.0%
!!! ACTTGCTACTTTTTGGTTGA+AGG + chr4_3:4327315-4327334 Msa0625310:three_prime_UTR 35.0%
!!! CTTGCTACTTTTTGGTTGAA+GGG + chr4_3:4327316-4327335 Msa0625310:three_prime_UTR 35.0%
!!! TTGCTACTTTTTGGTTGAAG+GGG + chr4_3:4327317-4327336 Msa0625310:three_prime_UTR 35.0%
AGATTGCATAGCCATGGAAA+TGG - chr4_3:4324068-4324087 None:intergenic 40.0%
ATGGAAACCTTACCTTACCT+GGG - chr4_3:4324098-4324117 None:intergenic 40.0%
AATGGAAACCTTACCTTACC+TGG - chr4_3:4324099-4324118 None:intergenic 40.0%
AATGTGGAAGGAAGGAACAT+GGG + chr4_3:4324401-4324420 Msa0625310:CDS 40.0%
TGGAAGAGAATGAGAACATC+AGG - chr4_3:4324485-4324504 None:intergenic 40.0%
GGAAGGAAGGAAGAAATAGA+TGG - chr4_3:4324545-4324564 None:intergenic 40.0%
AGGGAAAATGATGGTAAGGA+AGG - chr4_3:4324562-4324581 None:intergenic 40.0%
CTTTCCTTCTGTCATGAGAT+AGG + chr4_3:4324615-4324634 Msa0625310:intron 40.0%
ATTGCGAATAACACCTCCAT+TGG - chr4_3:4324680-4324699 None:intergenic 40.0%
ACAAATTAGGAATGCTCCAG+CGG - chr4_3:4324708-4324727 None:intergenic 40.0%
!! GGAACAAGTTGATTGCAAGA+AGG - chr4_3:4324767-4324786 None:intergenic 40.0%
GAAACTGCATATGCATTGCT+AGG + chr4_3:4324979-4324998 Msa0625310:intron 40.0%
GCATATGCATTGCTAGGATT+TGG + chr4_3:4324985-4325004 Msa0625310:intron 40.0%
AGTATACTTCATCCTGGACT+AGG + chr4_3:4325041-4325060 Msa0625310:intron 40.0%
ACGTTATTAGTTCCTAGTCC+AGG - chr4_3:4325056-4325075 None:intergenic 40.0%
AGTTACGAGCAAAGAAAACG+GGG + chr4_3:4325438-4325457 Msa0625310:intron 40.0%
CAGAGAATAACTGTCCAGTT+TGG + chr4_3:4325520-4325539 Msa0625310:intron 40.0%
TCTCAAAATTCCTCCACAAG+AGG + chr4_3:4325665-4325684 Msa0625310:intron 40.0%
TGGATGGATCTCATTCTACT+AGG - chr4_3:4325742-4325761 None:intergenic 40.0%
AAACATGTTCAAGCTGACGA+AGG - chr4_3:4325997-4326016 None:intergenic 40.0%
TGCCAAGTTCACTCTTGTAT+CGG + chr4_3:4326073-4326092 Msa0625310:CDS 40.0%
GATGGGGAAGTGAAATTTCA+GGG - chr4_3:4326421-4326440 None:intergenic 40.0%
TGATGGGGAAGTGAAATTTC+AGG - chr4_3:4326422-4326441 None:intergenic 40.0%
AGCATCATACCAACCAAAGA+AGG - chr4_3:4326504-4326523 None:intergenic 40.0%
AAAGATCGTGGTAGTATTGC+TGG - chr4_3:4326610-4326629 None:intergenic 40.0%
TTGGATTGTAGGGAATCAGT+AGG + chr4_3:4327008-4327027 Msa0625310:intron 40.0%
TATGTCCAATTCCTCAACCA+CGG - chr4_3:4327201-4327220 None:intergenic 40.0%
TGGTTGAGGAATTGGACATA+TGG + chr4_3:4327201-4327220 Msa0625310:three_prime_UTR 40.0%
ATGGAGAGGAAGAAATAGAC+TGG + chr4_3:4327220-4327239 Msa0625310:three_prime_UTR 40.0%
! GAGAATTCCTTGTGGACTAT+AGG - chr4_3:4327249-4327268 None:intergenic 40.0%
!!! TACTTTTTGGTTGAAGGGGA+GGG + chr4_3:4327321-4327340 Msa0625310:three_prime_UTR 40.0%
TAAGCTTCTCGTTCCTTCTC+TGG - chr4_3:4323905-4323924 None:intergenic 45.0%
AAGGAACGAGAAGCTTAGCT+TGG + chr4_3:4323908-4323927 Msa0625310:five_prime_UTR 45.0%
!! TGGCAGTTGAGTTGGAGAAA+TGG + chr4_3:4323928-4323947 Msa0625310:exon 45.0%
AACAGCAGATTGCATAGCCA+TGG - chr4_3:4324074-4324093 None:intergenic 45.0%
TATGCAATCTGCTGTTACCC+AGG + chr4_3:4324078-4324097 Msa0625310:CDS 45.0%
AATCTGCTGTTACCCAGGTA+AGG + chr4_3:4324083-4324102 Msa0625310:intron 45.0%
TCTCTCCAAGACACACAAAG+AGG + chr4_3:4324236-4324255 Msa0625310:CDS 45.0%
AGAGTCCTCTTTGTGTGTCT+TGG - chr4_3:4324244-4324263 None:intergenic 45.0%
CTACTTCTGTCAGGTGAATG+TGG + chr4_3:4324385-4324404 Msa0625310:intron 45.0%
TTCTGTCAGGTGAATGTGGA+AGG + chr4_3:4324389-4324408 Msa0625310:intron 45.0%
GAATGTGGAAGGAAGGAACA+TGG + chr4_3:4324400-4324419 Msa0625310:CDS 45.0%
CCTTCTGTCATGAGATAGGT+CGG + chr4_3:4324619-4324638 Msa0625310:intron 45.0%
TTATTCGCAATGTTGTCCGC+TGG + chr4_3:4324689-4324708 Msa0625310:CDS 45.0%
CAACTTGTCTACTGCGATGA+AGG - chr4_3:4325112-4325131 None:intergenic 45.0%
TTAGCTAGCATACGCAATCC+CGG - chr4_3:4325149-4325168 None:intergenic 45.0%
CGTGCGACTCCTAGAATAAA+AGG - chr4_3:4325267-4325286 None:intergenic 45.0%
ACACCTAGCCTAACCTTAGA+TGG + chr4_3:4325303-4325322 Msa0625310:intron 45.0%
! CAACCATCTAAGGTTAGGCT+AGG - chr4_3:4325309-4325328 None:intergenic 45.0%
CTAGCCTAACCTTAGATGGT+TGG + chr4_3:4325307-4325326 Msa0625310:intron 45.0%
! TTGCTCTCACCTTTGAGAAG+TGG + chr4_3:4325369-4325388 Msa0625310:intron 45.0%
ACCACTTCTTTGCTCAACTC+GGG - chr4_3:4325471-4325490 None:intergenic 45.0%
GACCACTTCTTTGCTCAACT+CGG - chr4_3:4325472-4325491 None:intergenic 45.0%
CACAATGGCCACTTCATCAA+CGG - chr4_3:4325642-4325661 None:intergenic 45.0%
GTAGGGGATCTCATTCTACT+AGG - chr4_3:4325701-4325720 None:intergenic 45.0%
AATGAGATCCCCTACACAAG+AGG + chr4_3:4325706-4325725 Msa0625310:intron 45.0%
GTTCTCAAGATGGATGTGGA+TGG - chr4_3:4325758-4325777 None:intergenic 45.0%
ATGTTCAAGCTGACGAAGGA+AGG - chr4_3:4325993-4326012 None:intergenic 45.0%
GGTTGAGATAACATTGGTGC+AGG + chr4_3:4326022-4326041 Msa0625310:intron 45.0%
ACATTGGTGCAGGAACAAGA+AGG + chr4_3:4326032-4326051 Msa0625310:intron 45.0%
!! GGAACAAGAAGGTGCTACAT+TGG + chr4_3:4326043-4326062 Msa0625310:intron 45.0%
GACCGATACAAGAGTGAACT+TGG - chr4_3:4326078-4326097 None:intergenic 45.0%
GAATGCGACATTGCCTTCTT+TGG + chr4_3:4326488-4326507 Msa0625310:intron 45.0%
ATTTGTGTGCACTGTCGTAC+TGG + chr4_3:4326678-4326697 Msa0625310:intron 45.0%
TCAAAGCTCAATTTCCCGTG+AGG + chr4_3:4326902-4326921 Msa0625310:CDS 45.0%
CAAAGCTCAATTTCCCGTGA+GGG + chr4_3:4326903-4326922 Msa0625310:CDS 45.0%
GATTGTAGGGAATCAGTAGG+AGG + chr4_3:4327011-4327030 Msa0625310:intron 45.0%
ATAAGCCGTGGTTGAGGAAT+TGG + chr4_3:4327193-4327212 Msa0625310:three_prime_UTR 45.0%
GAGGAATTGGACATATGGAG+AGG + chr4_3:4327206-4327225 Msa0625310:three_prime_UTR 45.0%
GAGAGGAAGAAATAGACTGG+AGG + chr4_3:4327223-4327242 Msa0625310:three_prime_UTR 45.0%
!!! CTACTTTTTGGTTGAAGGGG+AGG + chr4_3:4327320-4327339 Msa0625310:three_prime_UTR 45.0%
! CGTAAGGAGTGTACCAGAGA+AGG + chr4_3:4323889-4323908 Msa0625310:five_prime_UTR 50.0%
! GCTTAGCTTGGCAGTTGAGT+TGG + chr4_3:4323920-4323939 Msa0625310:five_prime_UTR 50.0%
GCTGTTACCCAGGTAAGGTA+AGG + chr4_3:4324088-4324107 Msa0625310:intron 50.0%
GTCAGGTGAATGTGGAAGGA+AGG + chr4_3:4324393-4324412 Msa0625310:intron 50.0%
AAGGAAGAGTAGCAGCAGCT+TGG - chr4_3:4324505-4324524 None:intergenic 50.0%
CCGACCTATCTCATGACAGA+AGG - chr4_3:4324622-4324641 None:intergenic 50.0%
GAATGCCGTCATAGCTCCAA+TGG + chr4_3:4324661-4324680 Msa0625310:CDS 50.0%
CACCTCCATTGGAGCTATGA+CGG - chr4_3:4324669-4324688 None:intergenic 50.0%
TAGCTAGCATACGCAATCCC+GGG - chr4_3:4325148-4325167 None:intergenic 50.0%
CGACACTTCCTCTTGTGTAG+GGG - chr4_3:4325717-4325736 None:intergenic 50.0%
GCGACACTTCCTCTTGTGTA+GGG - chr4_3:4325718-4325737 None:intergenic 50.0%
AGCGACACTTCCTCTTGTGT+AGG - chr4_3:4325719-4325738 None:intergenic 50.0%
GCGACATTGCCTTCTTTGGT+TGG + chr4_3:4326492-4326511 Msa0625310:intron 50.0%
ATACCTTCCAGGATCCCTCA+CGG - chr4_3:4326920-4326939 None:intergenic 50.0%
CAGTAACACTCGATAAGCCG+TGG + chr4_3:4327181-4327200 Msa0625310:three_prime_UTR 50.0%
TGGTACACTCCTTACGCTCG+CGG - chr4_3:4323885-4323904 None:intergenic 55.0%
TGCCGTCATAGCTCCAATGG+AGG + chr4_3:4324664-4324683 Msa0625310:CDS 55.0%
! GCCCGAGTTGAGCAAAGAAG+TGG + chr4_3:4325467-4325486 Msa0625310:intron 55.0%
! CTAGGGAGCCGTTGATGAAG+TGG + chr4_3:4325631-4325650 Msa0625310:intron 55.0%
AGCGACACTTCCTCTTGTGG+AGG - chr4_3:4325678-4325697 None:intergenic 55.0%
AGGAGCGACACTTCCTCTTG+TGG - chr4_3:4325681-4325700 None:intergenic 55.0%
CAATTTCCCGTGAGGGATCC+TGG + chr4_3:4326910-4326929 Msa0625310:CDS 55.0%
TACCTTCCAGGATCCCTCAC+GGG - chr4_3:4326919-4326938 None:intergenic 55.0%
! ATGCTTTTGGGCCGTGCTGT+TGG + chr4_3:4327065-4327084 Msa0625310:CDS 55.0%
CACTCGATAAGCCGTGGTTG+AGG + chr4_3:4327187-4327206 Msa0625310:three_prime_UTR 55.0%
CTGGAGGCCTATAGTCCACA+AGG + chr4_3:4327239-4327258 Msa0625310:three_prime_UTR 55.0%
CAAAGAACGCCGCGAGCGTA+AGG + chr4_3:4323873-4323892 Msa0625310:five_prime_UTR 60.0%
TTCCCGTGAGGGATCCTGGA+AGG + chr4_3:4326914-4326933 Msa0625310:CDS 60.0%
!! CTTTTGGGCCGTGCTGTTGG+TGG + chr4_3:4327068-4327087 Msa0625310:CDS 60.0%
CTCCTCCTCCACCAACAGCA+CGG - chr4_3:4327079-4327098 None:intergenic 60.0%
! TTGGGCCGTGCTGTTGGTGG+AGG + chr4_3:4327071-4327090 Msa0625310:CDS 65.0%
! GGCCGTGCTGTTGGTGGAGG+AGG + chr4_3:4327074-4327093 Msa0625310:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 4323841 4327529 4323841 ID=Msa0625310;Name=Msa0625310
chr4_3 mRNA 4323841 4327529 4323841 ID=Msa0625310-mRNA-1;Parent=Msa0625310;Name=Msa0625310-mRNA-1;_AED=0.33;_eAED=0.33;_QI=106|1|1|1|1|1|8|396|278
chr4_3 exon 4323841 4324099 4323841 ID=Msa0625310-mRNA-1:exon:1124;Parent=Msa0625310-mRNA-1
chr4_3 exon 4324191 4324304 4324191 ID=Msa0625310-mRNA-1:exon:1125;Parent=Msa0625310-mRNA-1
chr4_3 exon 4324398 4324532 4324398 ID=Msa0625310-mRNA-1:exon:1126;Parent=Msa0625310-mRNA-1
chr4_3 exon 4324637 4324732 4324637 ID=Msa0625310-mRNA-1:exon:1127;Parent=Msa0625310-mRNA-1
chr4_3 exon 4326044 4326124 4326044 ID=Msa0625310-mRNA-1:exon:1128;Parent=Msa0625310-mRNA-1
chr4_3 exon 4326556 4326642 4326556 ID=Msa0625310-mRNA-1:exon:1129;Parent=Msa0625310-mRNA-1
chr4_3 exon 4326880 4326935 4326880 ID=Msa0625310-mRNA-1:exon:1130;Parent=Msa0625310-mRNA-1
chr4_3 exon 4327019 4327529 4327019 ID=Msa0625310-mRNA-1:exon:1131;Parent=Msa0625310-mRNA-1
chr4_3 five_prime_UTR 4323841 4323946 4323841 ID=Msa0625310-mRNA-1:five_prime_utr;Parent=Msa0625310-mRNA-1
chr4_3 CDS 4323947 4324099 4323947 ID=Msa0625310-mRNA-1:cds;Parent=Msa0625310-mRNA-1
chr4_3 CDS 4324191 4324304 4324191 ID=Msa0625310-mRNA-1:cds;Parent=Msa0625310-mRNA-1
chr4_3 CDS 4324398 4324532 4324398 ID=Msa0625310-mRNA-1:cds;Parent=Msa0625310-mRNA-1
chr4_3 CDS 4324637 4324732 4324637 ID=Msa0625310-mRNA-1:cds;Parent=Msa0625310-mRNA-1
chr4_3 CDS 4326044 4326124 4326044 ID=Msa0625310-mRNA-1:cds;Parent=Msa0625310-mRNA-1
chr4_3 CDS 4326556 4326642 4326556 ID=Msa0625310-mRNA-1:cds;Parent=Msa0625310-mRNA-1
chr4_3 CDS 4326880 4326935 4326880 ID=Msa0625310-mRNA-1:cds;Parent=Msa0625310-mRNA-1
chr4_3 CDS 4327019 4327133 4327019 ID=Msa0625310-mRNA-1:cds;Parent=Msa0625310-mRNA-1
chr4_3 three_prime_UTR 4327134 4327529 4327134 ID=Msa0625310-mRNA-1:three_prime_utr;Parent=Msa0625310-mRNA-1
Gene Sequence

>Msa0625310

ATGGATTTGGCTCTCAATTTCAATTTTAGTTTCAGTTCATCACCACCACCACTATGCATTAATAATAGGAGAAGCCATACACTCTACAGTTACAATGTTAATAGAAGGAAATCAAAATCCATTTCCATGGCTATGCAATCTGCTGTTACCCAGGCATATGATTCTGAGCTAGAAAACAAGAAGCACGAGCTTTTAACATCTCTCCAAGACACACAAAGAGGACTCTTAACAACTCCTCTTCAACGTTCTTCTATTGAGGAAGCTCTTGTGAATGTGGAAGGAAGGAACATGGGTCACCCAATTGATTTTAACAAGTTGGATGGAACTTGGCGCTTGCAATATACTTCTGCTCCTGATGTTCTCATTCTCTTCCAAGCTGCTGCTACTCTTCCTTTCTTTCAAGTCGGACAAATATTTCAGAAATTTGAATGCCGTCATAGCTCCAATGGAGGTGTTATTCGCAATGTTGTCCGCTGGAGCATTCCTAATTTGTTTGAGGAACAAGAAGGTGCTACATTGGTTGTATCTGCCAAGTTCACTCTTGTATCGGTCCGAAATATTTACCTTCAGTTTCAAGAGATCTCAGTTCAAGATATAAATATTAGTGAACAACTGCAGGCTCTAATATCTCCAGCAATACTACCACGATCTTTTATAAGTTTGCAGATATTGCAATATCTCCGTGCTTTCAAAGCTCAATTTCCCGTGAGGGATCCTGGAAGGGAATCAGTAGGAGGATTATATTATCTGAGTTATTTGGATGATAATATGCTTTTGGGCCGTGCTGTTGGTGGAGGAGGAGTATTTGTGTTTACGAGAGCTCAATCACTTTACTGA

Protein sequence

>Msa0625310

MDLALNFNFSFSSSPPPLCINNRRSHTLYSYNVNRRKSKSISMAMQSAVTQAYDSELENKKHELLTSLQDTQRGLLTTPLQRSSIEEALVNVEGRNMGHPIDFNKLDGTWRLQYTSAPDVLILFQAAATLPFFQVGQIFQKFECRHSSNGGVIRNVVRWSIPNLFEEQEGATLVVSAKFTLVSVRNIYLQFQEISVQDINISEQLQALISPAILPRSFISLQILQYLRAFKAQFPVRDPGRESVGGLYYLSYLDDNMLLGRAVGGGGVFVFTRAQSLY*