AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0849290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0849290 MtrunA17_Chr5g0423381 96.307 352 12 1 1 352 1 351 0.0 702
Msa0849290 MtrunA17_Chr1g0188361 33.138 341 200 10 13 331 46 380 5.34e-54 182
Msa0849290 MtrunA17_Chr8g0372991 33.987 306 168 8 60 351 84 369 1.14e-48 167
Msa0849290 MtrunA17_Chr4g0018641 29.333 300 185 7 50 340 394 675 6.09e-33 129
Msa0849290 MtrunA17_Chr3g0090521 24.096 332 214 9 55 348 126 457 7.96e-24 102
Msa0849290 MtrunA17_Chr4g0003831 25.263 285 183 8 80 345 373 646 2.59e-15 77.0
Msa0849290 MtrunA17_Chr8g0337611 22.662 278 183 8 75 340 173 430 2.31e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0849290 AT5G19850.1 69.118 340 97 2 4 341 26 359 0.0 510
Msa0849290 AT4G36530.1 31.494 308 183 6 58 351 25 318 4.54e-47 162
Msa0849290 AT4G36530.2 31.494 308 183 6 58 351 82 375 1.89e-46 162
Msa0849290 AT5G38520.1 32.581 310 186 9 48 340 55 358 8.04e-46 160
Msa0849290 AT5G38520.2 31.366 322 186 9 48 340 55 370 5.40e-44 155
Msa0849290 AT4G25290.1 30.201 298 181 8 51 340 391 669 1.23e-28 117
Msa0849290 AT5G13800.3 25.526 333 206 9 54 347 113 442 6.58e-27 111
Msa0849290 AT5G13800.2 25.526 333 206 9 54 347 90 419 7.06e-27 111
Msa0849290 AT5G13800.1 25.526 333 206 9 54 347 90 419 7.06e-27 111
Msa0849290 AT5G13800.4 25.397 315 194 8 54 329 90 402 5.71e-25 105
Msa0849290 AT4G12830.1 23.466 277 186 6 75 342 132 391 1.41e-16 80.5
Msa0849290 AT1G15490.2 22.143 280 192 7 78 340 297 567 5.09e-11 64.3
Msa0849290 AT1G15490.1 22.143 280 192 7 78 340 368 638 5.27e-11 64.3
Msa0849290 AT1G15490.4 22.143 280 192 7 78 340 216 486 5.51e-11 63.9

Find 121 sgRNAs with CRISPR-Local

Find 517 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAATACATGGAAGAATT+TGG 0.164207 5_4:-35831034 None:intergenic
CCTAGGTTATTTGATAATTA+AGG 0.191001 5_4:+35830997 Msa0849290:three_prime_UTR
TCTATTGATCTTATTGGATA+TGG 0.205615 5_4:+35825615 Msa0849290:CDS
GTATACTCTATTGATCTTAT+TGG 0.213863 5_4:+35825609 Msa0849290:CDS
ATCTGTACCTAAGCAATCTT+TGG 0.231716 5_4:-35826059 None:intergenic
AATATTCGCTATCAATATTC+TGG 0.257699 5_4:+35824423 Msa0849290:CDS
ATACGATGTAGAAATGTTAA+AGG 0.295873 5_4:-35830968 None:intergenic
AAAATGTGTAGATATGAATT+TGG 0.297947 5_4:+35831065 Msa0849290:three_prime_UTR
GGAAATACATGGAAGAATTT+GGG 0.302240 5_4:-35831033 None:intergenic
TTCTTTATATGCAATTCTAT+TGG 0.304916 5_4:+35825750 Msa0849290:CDS
TGCAGGAGTTGTAGGTCTTC+AGG 0.314699 5_4:+35825924 Msa0849290:intron
CAACGGTCCTGCATTAGTTT+TGG 0.317095 5_4:+35824449 Msa0849290:CDS
TCTCCAATTTGACGAGGATT+TGG 0.317385 5_4:-35825651 None:intergenic
AAACCAAATCCTCGTCAAAT+TGG 0.328365 5_4:+35825648 Msa0849290:CDS
AAATTCTTCCATGTATTTCC+AGG 0.336060 5_4:+35831036 Msa0849290:three_prime_UTR
TGGAAGAATTTGGGGAATAG+AGG 0.348910 5_4:-35831024 None:intergenic
TAATTTCTTCCCATCTCAAT+TGG 0.375086 5_4:-35828263 None:intergenic
GAAAATGCAACGACACTGTT+TGG 0.390503 5_4:-35824215 None:intergenic
AAGAGGATAGTGTTCGAGGA+TGG 0.391260 5_4:-35824166 None:intergenic
CTACATCGTATTAGAGTCCT+AGG 0.398922 5_4:+35830980 Msa0849290:three_prime_UTR
ATATGTGTATTGTACATCAT+TGG 0.400169 5_4:+35830848 Msa0849290:three_prime_UTR
TGAAACACTGCTCCTTCTAT+AGG 0.409193 5_4:-35830921 None:intergenic
TCCTTGTACTCTCCTATAGA+AGG 0.409809 5_4:+35830909 Msa0849290:three_prime_UTR
AGTCACTTTCTTGATGCTGC+CGG 0.410473 5_4:+35830645 Msa0849290:three_prime_UTR
AGGAATCAAGTCCTAAAGTT+AGG 0.411045 5_4:-35830890 None:intergenic
TGAGGGCAATGGCCAACATT+TGG 0.415552 5_4:-35828323 None:intergenic
TTACTCAGGAGGCCCTCTTC+CGG 0.423885 5_4:+35828080 Msa0849290:CDS
CTTGAGTTTATTTGTTACTC+AGG 0.435166 5_4:+35828066 Msa0849290:CDS
GTCACTTTCTTGATGCTGCC+GGG 0.437269 5_4:+35830646 Msa0849290:three_prime_UTR
AGAATTCCCTTGCAGATTTG+TGG 0.439987 5_4:-35825961 None:intergenic
TTCATTGTCCTTCCAAATGT+TGG 0.443257 5_4:+35828311 Msa0849290:CDS
TGGGGTAAGAGATGAAGATT+TGG 0.443933 5_4:-35830601 None:intergenic
GGAGGAAACTTACCATTACT+TGG 0.444125 5_4:-35828116 None:intergenic
TTTATATGCAATTCTATTGG+AGG 0.447257 5_4:+35825753 Msa0849290:CDS
AGAGGATAGTGTTCGAGGAT+GGG 0.450570 5_4:-35824165 None:intergenic
TGCATGGTTTCGGAGCTAAC+AGG 0.452499 5_4:+35824472 Msa0849290:CDS
CTTAGTCCAGGGCTGGAACC+TGG 0.452536 5_4:+35828027 Msa0849290:CDS
ATTGAGATGGGAAGAAATTA+CGG 0.452709 5_4:+35828266 Msa0849290:CDS
GTTCATTCCAAAGATTGCTT+AGG 0.456751 5_4:+35826052 Msa0849290:CDS
ACAGCGCCAGGTTCCAGCCC+TGG 0.457858 5_4:-35828033 None:intergenic
TACGATGTAGAAATGTTAAA+GGG 0.458243 5_4:-35830967 None:intergenic
TGTTATAGGGATACTTCTGT+TGG 0.462681 5_4:+35826158 Msa0849290:intron
CCCATCTCAATTGGCTCCCA+AGG 0.463436 5_4:-35828254 None:intergenic
CACTAGCTCATCAGTCACTT+TGG 0.466030 5_4:-35827995 None:intergenic
CCATGTATCAAAAGTGTAGA+AGG 0.466315 5_4:-35825679 None:intergenic
GAGTAAGAGGATAGTGTTCG+AGG 0.467291 5_4:-35824170 None:intergenic
CATGGGGTGACAAGGATCCT+TGG 0.467501 5_4:+35828237 Msa0849290:CDS
AAATGTTGGCCATTGCCCTC+AGG 0.470508 5_4:+35828325 Msa0849290:CDS
CAGGTTCCAGCCCTGGACTA+AGG 0.473063 5_4:-35828026 None:intergenic
TCCATCGAAAGATTCACCTT+TGG 0.474063 5_4:+35830756 Msa0849290:three_prime_UTR
TCACCCCATGCTATCAAAAC+CGG 0.475442 5_4:-35828224 None:intergenic
AGAATTACCTGGTTTGAACC+TGG 0.475747 5_4:-35824289 None:intergenic
ATATTCGCTATCAATATTCT+GGG 0.476186 5_4:+35824424 Msa0849290:CDS
GTACTTGTAGCATGTGGAAT+TGG 0.478100 5_4:+35824391 Msa0849290:intron
ATGGGGTGACAAGGATCCTT+GGG 0.479263 5_4:+35828238 Msa0849290:CDS
CCCACTTGTGGAGTCATTTG+TGG 0.479333 5_4:+35830569 Msa0849290:CDS
CACCTTTGGAAGGAAAAGTA+AGG 0.479602 5_4:+35830770 Msa0849290:three_prime_UTR
GCATTGATGCAGTGAATCAA+TGG 0.481133 5_4:+35824073 Msa0849290:five_prime_UTR
GGTAGCAGTTCCTCCGGAAG+AGG 0.481343 5_4:-35828093 None:intergenic
GCATCAAGAAAGTGACTGAC+AGG 0.484411 5_4:-35830639 None:intergenic
GTGCAGCTGATCCTTAGTCC+AGG 0.487169 5_4:+35828015 Msa0849290:CDS
CACTTCATTGCAGTGACCAC+TGG 0.487204 5_4:+35825550 Msa0849290:intron
TCATTTGCTTCCACCAAGAG+TGG 0.495314 5_4:+35830693 Msa0849290:three_prime_UTR
GGAGAGAGTGAGAGTAGTGG+TGG 0.499143 5_4:-35824144 None:intergenic
TTTCTACCCCTGGAAATACA+TGG 0.508239 5_4:-35831044 None:intergenic
TTCATATAAAGAAGCAGCCT+TGG 0.511606 5_4:+35826010 Msa0849290:CDS
AGAAAGACATCTACAGCGCC+AGG 0.512098 5_4:-35828045 None:intergenic
GCTGATCCTTAGTCCAGGGC+TGG 0.515765 5_4:+35828020 Msa0849290:CDS
AATTCTTCCATGTATTTCCA+GGG 0.518593 5_4:+35831037 Msa0849290:three_prime_UTR
GGAAGAATTTGGGGAATAGA+GGG 0.523251 5_4:-35831023 None:intergenic
CCTTAATTATCAAATAACCT+AGG 0.523316 5_4:-35830997 None:intergenic
CATTTGCTTCCACCAAGAGT+GGG 0.526568 5_4:+35830694 Msa0849290:three_prime_UTR
CGTTCAAAATGAAGAGCTCC+AGG 0.529882 5_4:+35824271 Msa0849290:CDS
ACTTGGGGTAGCAGTTCCTC+CGG 0.530519 5_4:-35828099 None:intergenic
TCCTTGGGAGCCAATTGAGA+TGG 0.531636 5_4:+35828253 Msa0849290:CDS
GAGTTTATTTGTTACTCAGG+AGG 0.533102 5_4:+35828069 Msa0849290:CDS
GTAGCAGTTCCTCCGGAAGA+GGG 0.538863 5_4:-35828092 None:intergenic
TTGTAGCATGTGGAATTGGA+AGG 0.541812 5_4:+35824395 Msa0849290:intron
GAGGAAACTTACCATTACTT+GGG 0.543002 5_4:-35828115 None:intergenic
CAGGGAATCAATCAACTGAT+GGG 0.544170 5_4:-35830620 None:intergenic
GCAACGACACTGTTTGGTTG+AGG 0.546785 5_4:-35824209 None:intergenic
CTTTGGAATGAACTGATGAA+AGG 0.547460 5_4:-35826042 None:intergenic
CCTTGGGAGCCAATTGAGAT+GGG 0.554544 5_4:+35828254 Msa0849290:CDS
TACGCAAAGATATATTAAGA+AGG 0.556446 5_4:-35825984 None:intergenic
TCAACTTGTGAACCCACTTG+TGG 0.558784 5_4:+35830557 Msa0849290:CDS
TGCAGCTGATCCTTAGTCCA+GGG 0.559474 5_4:+35828016 Msa0849290:CDS
TCCAAAGGTGAATCTTTCGA+TGG 0.562629 5_4:-35830757 None:intergenic
TTGTGGAGTCATTTGTGGCA+CGG 0.566169 5_4:+35830574 Msa0849290:CDS
CCATGCACCAAAACTAATGC+AGG 0.568163 5_4:-35824456 None:intergenic
ACAAGTGGGTTCACAAGTTG+AGG 0.568774 5_4:-35830555 None:intergenic
ATGGGAGAGAGTGAGAGTAG+TGG 0.570860 5_4:-35824147 None:intergenic
GCCACAAATGACTCCACAAG+TGG 0.574429 5_4:-35830570 None:intergenic
TCGAAAGATTCACCTTTGGA+AGG 0.578239 5_4:+35830760 Msa0849290:three_prime_UTR
GAAATACATGGAAGAATTTG+GGG 0.579143 5_4:-35831032 None:intergenic
ACAGGGAATCAATCAACTGA+TGG 0.579224 5_4:-35830621 None:intergenic
TGTAGCATGTGGAATTGGAA+GGG 0.581070 5_4:+35824396 Msa0849290:intron
TCCTTCTATAGGAGAGTACA+AGG 0.582721 5_4:-35830910 None:intergenic
AATCAAGTCCTAAAGTTAGG+AGG 0.584220 5_4:-35830887 None:intergenic
GAGAAAGAACCTGAGGGCAA+TGG 0.584329 5_4:-35828334 None:intergenic
AACAGAACCACAAATCTGCA+AGG 0.584434 5_4:+35825954 Msa0849290:CDS
TTTGATAGCATGGGGTGACA+AGG 0.592047 5_4:+35828229 Msa0849290:CDS
ATCAATAGAGTATACGCGGT+GGG 0.596592 5_4:-35825601 None:intergenic
TTCATTGCAGTGACCACTGG+AGG 0.599325 5_4:+35825553 Msa0849290:intron
ATACACGATTTCAATGTGCC+CGG 0.599756 5_4:-35830664 None:intergenic
ACAAAACTCATTTAATTGTG+CGG 0.599912 5_4:-35825703 None:intergenic
GGCAATGGCCAACATTTGGA+AGG 0.602468 5_4:-35828319 None:intergenic
ACAGAACCACAAATCTGCAA+GGG 0.606953 5_4:+35825955 Msa0849290:CDS
CTCAGGAGGCCCTCTTCCGG+AGG 0.608570 5_4:+35828083 Msa0849290:CDS
AAGAGCTCCAGGTTCAAACC+AGG 0.616975 5_4:+35824282 Msa0849290:CDS
GGAACTGCTACCCCAAGTAA+TGG 0.618803 5_4:+35828104 Msa0849290:CDS
ATTCTTCCATGTATTTCCAG+GGG 0.645968 5_4:+35831038 Msa0849290:three_prime_UTR
AGGAAACTTACCATTACTTG+GGG 0.652133 5_4:-35828114 None:intergenic
AGGGAATCAATCAACTGATG+GGG 0.671099 5_4:-35830619 None:intergenic
CATCAAGAAAGTGACTGACA+GGG 0.678149 5_4:-35830638 None:intergenic
TATCAATATTCTGGGAACAA+CGG 0.681480 5_4:+35824432 Msa0849290:CDS
ATGAAAGGTCTTGCATACCA+AGG 0.685966 5_4:-35826027 None:intergenic
ACTCGAGCACATGAATAGAG+TGG 0.686522 5_4:+35824018 Msa0849290:five_prime_UTR
GAATCGTCTCCAATTTGACG+AGG 0.688025 5_4:-35825657 None:intergenic
CCACAAATGACTCCACAAGT+GGG 0.691468 5_4:-35830569 None:intergenic
GATCAATAGAGTATACGCGG+TGG 0.703484 5_4:-35825602 None:intergenic
TAAGATCAATAGAGTATACG+CGG 0.721303 5_4:-35825605 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTGTTATTTTTTATTTTTT+TGG - chr5_4:35825256-35825275 None:intergenic 10.0%
!!! TACTTTTCTTTTTTAAATTA+TGG - chr5_4:35827075-35827094 None:intergenic 10.0%
!! AAAATTCAAGAATAAAGAAA+AGG - chr5_4:35825370-35825389 None:intergenic 15.0%
!! TATATCACATATTTATTGTA+AGG + chr5_4:35825474-35825493 Msa0849290:intron 15.0%
!! ATATCACATATTTATTGTAA+GGG + chr5_4:35825475-35825494 Msa0849290:intron 15.0%
!! ATTATAAAAATATAGAGCAT+GGG - chr5_4:35827696-35827715 None:intergenic 15.0%
!! AATTATAAAAATATAGAGCA+TGG - chr5_4:35827697-35827716 None:intergenic 15.0%
!!! AAAATCATACTTGTTTTTTT+TGG - chr5_4:35827918-35827937 None:intergenic 15.0%
!! TTAATATGATATCTATAATG+CGG - chr5_4:35828604-35828623 None:intergenic 15.0%
!! TTAAGTCTATTAGAAAATAT+TGG + chr5_4:35829246-35829265 Msa0849290:intron 15.0%
!! TTATGTAAACCATATTATTA+TGG - chr5_4:35830361-35830380 None:intergenic 15.0%
!! ATTCATATTTCAGAACTAAA+CGG - chr5_4:35824321-35824340 None:intergenic 20.0%
!!! TTATATAGAATTTTGCTAAC+CGG + chr5_4:35824659-35824678 Msa0849290:intron 20.0%
!! TCTAAACAGATTATATAAAG+AGG - chr5_4:35824837-35824856 None:intergenic 20.0%
!! AAATAGATCTTGAATTAACT+GGG - chr5_4:35824996-35825015 None:intergenic 20.0%
!! TAAATAGATCTTGAATTAAC+TGG - chr5_4:35824997-35825016 None:intergenic 20.0%
!! AATTATACAAATCTTTACCA+GGG + chr5_4:35825294-35825313 Msa0849290:intron 20.0%
!! TTTCATACATATAAAGAAAC+AGG - chr5_4:35825325-35825344 None:intergenic 20.0%
!! TTCATTTCAATTAAAAATGC+AGG + chr5_4:35825443-35825462 Msa0849290:intron 20.0%
!! TTCTTTATATGCAATTCTAT+TGG + chr5_4:35825750-35825769 Msa0849290:CDS 20.0%
!!! TCGAATAATTTAAAATAACC+TGG - chr5_4:35825816-35825835 None:intergenic 20.0%
!! TATAACATAAAGCTTGATAA+TGG - chr5_4:35826145-35826164 None:intergenic 20.0%
!!! ATTATCAAGCTTTATGTTAT+AGG + chr5_4:35826144-35826163 Msa0849290:intron 20.0%
!!! TTATCAAGCTTTATGTTATA+GGG + chr5_4:35826145-35826164 Msa0849290:intron 20.0%
!! CTGTAACATTGTTTAAATAT+AGG - chr5_4:35826288-35826307 None:intergenic 20.0%
!! CTATATTTAAACAATGTTAC+AGG + chr5_4:35826286-35826305 Msa0849290:intron 20.0%
!!! TGAGTTATTTATCAATTTTC+TGG + chr5_4:35826743-35826762 Msa0849290:intron 20.0%
!!! GAGTTATTTATCAATTTTCT+GGG + chr5_4:35826744-35826763 Msa0849290:intron 20.0%
!! TGAAAATTAAGTTAACAACA+TGG - chr5_4:35827033-35827052 None:intergenic 20.0%
!! TAAGATAAAATTAAGCACTA+GGG - chr5_4:35827290-35827309 None:intergenic 20.0%
!! ATAAGATAAAATTAAGCACT+AGG - chr5_4:35827291-35827310 None:intergenic 20.0%
!! AATAATTGTTTGATATTGCT+AGG - chr5_4:35827818-35827837 None:intergenic 20.0%
!! AATAGGAATTAAGTATGTTA+AGG + chr5_4:35828496-35828515 Msa0849290:intron 20.0%
!! ATAGGAATTAAGTATGTTAA+GGG + chr5_4:35828497-35828516 Msa0849290:intron 20.0%
!! AATTAGATAACAGAATGTAA+AGG - chr5_4:35829305-35829324 None:intergenic 20.0%
!! ATTTGAGTAACAATTAATGA+TGG + chr5_4:35829687-35829706 Msa0849290:intron 20.0%
!! ATTAACTTATAAAATCCCAT+GGG + chr5_4:35829935-35829954 Msa0849290:intron 20.0%
!! TTATATCTAATTGGTATAAG+AGG - chr5_4:35830228-35830247 None:intergenic 20.0%
!! TTCATTTTGAACGGTTAATT+TGG - chr5_4:35824264-35824283 None:intergenic 25.0%
! TTCATATTTCAGAACTAAAC+GGG - chr5_4:35824320-35824339 None:intergenic 25.0%
! TGCTACAAGTACAAAATAAA+AGG - chr5_4:35824383-35824402 None:intergenic 25.0%
! AATATTCGCTATCAATATTC+TGG + chr5_4:35824423-35824442 Msa0849290:CDS 25.0%
! ATATTCGCTATCAATATTCT+GGG + chr5_4:35824424-35824443 Msa0849290:CDS 25.0%
!! GAATAATCTAAAACAACCTA+TGG + chr5_4:35824881-35824900 Msa0849290:intron 25.0%
! TTTACAAGTGATTGTATTTG+AGG + chr5_4:35824942-35824961 Msa0849290:intron 25.0%
!! GTTCATTTACATGAACTTTT+GGG - chr5_4:35825055-35825074 None:intergenic 25.0%
!! TGTTCATTTACATGAACTTT+TGG - chr5_4:35825056-35825075 None:intergenic 25.0%
! GAATTATACAAATCTTTACC+AGG + chr5_4:35825293-35825312 Msa0849290:intron 25.0%
! ATTATACAAATCTTTACCAG+GGG + chr5_4:35825295-35825314 Msa0849290:intron 25.0%
! TCAAGAATAAAGAAAAGGTT+TGG - chr5_4:35825365-35825384 None:intergenic 25.0%
!!! TTGAATTTTTTCATGAGTAG+AGG + chr5_4:35825381-35825400 Msa0849290:intron 25.0%
! GTATACTCTATTGATCTTAT+TGG + chr5_4:35825609-35825628 Msa0849290:CDS 25.0%
! TCTATTGATCTTATTGGATA+TGG + chr5_4:35825615-35825634 Msa0849290:CDS 25.0%
! ACAAAACTCATTTAATTGTG+CGG - chr5_4:35825706-35825725 None:intergenic 25.0%
! TTTATATGCAATTCTATTGG+AGG + chr5_4:35825753-35825772 Msa0849290:CDS 25.0%
! TTGATATTTAATTACTGACC+AGG + chr5_4:35825795-35825814 Msa0849290:intron 25.0%
!!! ATTTGCTATTATTTTTGTGC+AGG + chr5_4:35825907-35825926 Msa0849290:intron 25.0%
! TACGCAAAGATATATTAAGA+AGG - chr5_4:35825987-35826006 None:intergenic 25.0%
! GTAAATATATCAATTCAGAC+CGG - chr5_4:35826710-35826729 None:intergenic 25.0%
! TCAGTAGAGTAGTATAAATA+AGG - chr5_4:35827156-35827175 None:intergenic 25.0%
! TTATTTATACTACTCTACTG+AGG + chr5_4:35827155-35827174 Msa0849290:intron 25.0%
!!! TTCTAGTTCATATGACTATA+AGG + chr5_4:35827244-35827263 Msa0849290:intron 25.0%
! GGGAATACTAAAGAATATTA+AGG - chr5_4:35827336-35827355 None:intergenic 25.0%
! GAGAATGATGAAGAATAATA+TGG - chr5_4:35827374-35827393 None:intergenic 25.0%
! ATAACTAAAAAAATGCTCCT+AGG + chr5_4:35827728-35827747 Msa0849290:intron 25.0%
! ATATAAAGCATGATACACAT+TGG - chr5_4:35827857-35827876 None:intergenic 25.0%
! GCTTTATATATTGACAAACA+AGG + chr5_4:35827868-35827887 Msa0849290:intron 25.0%
! CTACTATATACAAACCAAAA+AGG + chr5_4:35828755-35828774 Msa0849290:intron 25.0%
! ATATTATGAGTGTGTTCATT+GGG - chr5_4:35829004-35829023 None:intergenic 25.0%
! AATATTATGAGTGTGTTCAT+TGG - chr5_4:35829005-35829024 None:intergenic 25.0%
! CTAATTGACTAGTATTTAGT+TGG + chr5_4:35829319-35829338 Msa0849290:intron 25.0%
! GCAATTATATATTCACCTAT+TGG - chr5_4:35829437-35829456 None:intergenic 25.0%
! TCATCAAGCTAGTATATTTA+TGG - chr5_4:35829584-35829603 None:intergenic 25.0%
!! TTTCTTTTTAACCAATGACA+AGG - chr5_4:35829616-35829635 None:intergenic 25.0%
! AATTGTTACTCAAATCTGAT+AGG - chr5_4:35829682-35829701 None:intergenic 25.0%
! AAGTACTTAATGATCTCTAT+CGG + chr5_4:35829730-35829749 Msa0849290:intron 25.0%
!! TGATATCTAAGATCTATCTT+TGG + chr5_4:35829831-35829850 Msa0849290:intron 25.0%
!! GATATCTAAGATCTATCTTT+GGG + chr5_4:35829832-35829851 Msa0849290:intron 25.0%
! TTTAGAGGAACATTTACAAA+TGG - chr5_4:35829905-35829924 None:intergenic 25.0%
!! TTAATCAAGGAACATTTTAG+AGG - chr5_4:35829920-35829939 None:intergenic 25.0%
!! GGGATTTTATAAGTTAATCA+AGG - chr5_4:35829933-35829952 None:intergenic 25.0%
! GATTAACTTATAAAATCCCA+TGG + chr5_4:35829934-35829953 Msa0849290:intron 25.0%
! GGTTATCACTTATATCTAAT+TGG - chr5_4:35830237-35830256 None:intergenic 25.0%
!!! AAAACCACTTTTATTGTGAA+CGG - chr5_4:35830258-35830277 None:intergenic 25.0%
! AATATCGCTCCATAATAATA+TGG + chr5_4:35830349-35830368 Msa0849290:intron 25.0%
!!! AAAACAAGCATTGAAGAAAA+AGG - chr5_4:35830390-35830409 None:intergenic 25.0%
!! TTTTTCTTCAATGCTTGTTT+TGG + chr5_4:35830389-35830408 Msa0849290:intron 25.0%
! ATATGTGTATTGTACATCAT+TGG + chr5_4:35830848-35830867 Msa0849290:three_prime_UTR 25.0%
!! ATTTTATTCCTCCTAACTTT+AGG + chr5_4:35830879-35830898 Msa0849290:three_prime_UTR 25.0%
! TACGATGTAGAAATGTTAAA+GGG - chr5_4:35830970-35830989 None:intergenic 25.0%
! ATACGATGTAGAAATGTTAA+AGG - chr5_4:35830971-35830990 None:intergenic 25.0%
! CCTTAATTATCAAATAACCT+AGG - chr5_4:35831000-35831019 None:intergenic 25.0%
!! CCTAGGTTATTTGATAATTA+AGG + chr5_4:35830997-35831016 Msa0849290:three_prime_UTR 25.0%
!!! ACGAATTTTTTTGGAGTAAG+AGG - chr5_4:35824186-35824205 None:intergenic 30.0%
!!! TTGAGGAGAACGAATTTTTT+TGG - chr5_4:35824195-35824214 None:intergenic 30.0%
! TATTTTGTACTTGTAGCATG+TGG + chr5_4:35824385-35824404 Msa0849290:intron 30.0%
! TATCAATATTCTGGGAACAA+CGG + chr5_4:35824432-35824451 Msa0849290:CDS 30.0%
TTCTTAATCTCATTATTCGC+CGG + chr5_4:35824505-35824524 Msa0849290:intron 30.0%
TATCAGATACCGATATTCAA+TGG - chr5_4:35824534-35824553 None:intergenic 30.0%
TACAATTCCGTCTCTATATT+TGG + chr5_4:35824552-35824571 Msa0849290:intron 30.0%
AGATACTCCAAATATAGAGA+CGG - chr5_4:35824562-35824581 None:intergenic 30.0%
! TCTCTATATTTGGAGTATCT+CGG + chr5_4:35824562-35824581 Msa0849290:intron 30.0%
TCTTTCATGATTCTTTAACC+AGG + chr5_4:35824795-35824814 Msa0849290:intron 30.0%
CTTTCATGATTCTTTAACCA+GGG + chr5_4:35824796-35824815 Msa0849290:intron 30.0%
!! TCTGTTTAGATTTGCTATCT+AGG + chr5_4:35824847-35824866 Msa0849290:intron 30.0%
ATTAACCACTTGAGTTTAAC+TGG - chr5_4:35825096-35825115 None:intergenic 30.0%
AGTAAAAAATTGTTCCACTC+TGG - chr5_4:35825162-35825181 None:intergenic 30.0%
!!! GAGTGGAACAATTTTTTACT+AGG + chr5_4:35825162-35825181 Msa0849290:intron 30.0%
TTATACAAATCTTTACCAGG+GGG + chr5_4:35825296-35825315 Msa0849290:intron 30.0%
TAAGATCAATAGAGTATACG+CGG - chr5_4:35825608-35825627 None:intergenic 30.0%
! CTTCTACACTTTTGATACAT+GGG + chr5_4:35825680-35825699 Msa0849290:CDS 30.0%
! ATTGGAGGTAAATTCTTTTC+AGG + chr5_4:35825768-35825787 Msa0849290:intron 30.0%
TCATGTTCAAAACTTAAGCA+AGG + chr5_4:35826113-35826132 Msa0849290:intron 30.0%
CATGTTCAAAACTTAAGCAA+GGG + chr5_4:35826114-35826133 Msa0849290:intron 30.0%
!!! CTTTGATAGCTAGCTTTTAA+GGG - chr5_4:35826494-35826513 None:intergenic 30.0%
!!! TCTTTGATAGCTAGCTTTTA+AGG - chr5_4:35826495-35826514 None:intergenic 30.0%
ATAGAGACTTGGGTATTATT+GGG - chr5_4:35826583-35826602 None:intergenic 30.0%
TTGAGTTATCTGTTGTTATG+GGG - chr5_4:35826613-35826632 None:intergenic 30.0%
GTTGAGTTATCTGTTGTTAT+GGG - chr5_4:35826614-35826633 None:intergenic 30.0%
AACAGATAACTCAACCTTTA+TGG + chr5_4:35826619-35826638 Msa0849290:intron 30.0%
ATGCTTGAACATAAACACTT+AGG + chr5_4:35826878-35826897 Msa0849290:intron 30.0%
TGCTTGAACATAAACACTTA+GGG + chr5_4:35826879-35826898 Msa0849290:intron 30.0%
TAAATAAGGCTCATCACTAA+GGG - chr5_4:35827142-35827161 None:intergenic 30.0%
ATAAATAAGGCTCATCACTA+AGG - chr5_4:35827143-35827162 None:intergenic 30.0%
GATCATTCTACTTTGTAATG+TGG - chr5_4:35827183-35827202 None:intergenic 30.0%
CAAAGAAAAGTCTAGAGATA+TGG + chr5_4:35827218-35827237 Msa0849290:intron 30.0%
TATGGAAGTCTCTAGATATA+GGG - chr5_4:35827356-35827375 None:intergenic 30.0%
ATATGGAAGTCTCTAGATAT+AGG - chr5_4:35827357-35827376 None:intergenic 30.0%
TAATTTCATCCTAAGTCACA+AGG - chr5_4:35827474-35827493 None:intergenic 30.0%
TTAGGATGAAATTAGCCATT+TGG + chr5_4:35827480-35827499 Msa0849290:intron 30.0%
! ACAACTGAAGGATTCTAAAA+TGG - chr5_4:35827524-35827543 None:intergenic 30.0%
! ATTTTTCCCTTGGATTACTT+TGG - chr5_4:35827552-35827571 None:intergenic 30.0%
!!! GTTATTACTGATTTTTCCCT+TGG - chr5_4:35827562-35827581 None:intergenic 30.0%
TAAAAATATAGAGCATGGGA+GGG - chr5_4:35827692-35827711 None:intergenic 30.0%
ATAAAAATATAGAGCATGGG+AGG - chr5_4:35827693-35827712 None:intergenic 30.0%
TAATAGGCCTTTATTCTATG+AGG - chr5_4:35827789-35827808 None:intergenic 30.0%
TATTGCTAGGACTTAGTAAT+AGG - chr5_4:35827805-35827824 None:intergenic 30.0%
TTCACAATCAGTATAGTTTC+TGG - chr5_4:35827942-35827961 None:intergenic 30.0%
! CTTGAGTTTATTTGTTACTC+AGG + chr5_4:35828066-35828085 Msa0849290:CDS 30.0%
TAATTTCTTCCCATCTCAAT+TGG - chr5_4:35828266-35828285 None:intergenic 30.0%
ATTGAGATGGGAAGAAATTA+CGG + chr5_4:35828266-35828285 Msa0849290:CDS 30.0%
ATAGAAAGAAAGCAAGTGAA+TGG - chr5_4:35828365-35828384 None:intergenic 30.0%
AACAGTAACATCACAAAAAG+TGG - chr5_4:35828458-35828477 None:intergenic 30.0%
TATTTCCCTTGAAACTTACA+AGG - chr5_4:35828531-35828550 None:intergenic 30.0%
ATATCTATAATGCGGTTCTA+TGG - chr5_4:35828596-35828615 None:intergenic 30.0%
ACAACAGTACATGCATATTA+TGG + chr5_4:35828708-35828727 Msa0849290:intron 30.0%
!! CAATTTTGATCGATCCTTTT+TGG - chr5_4:35828772-35828791 None:intergenic 30.0%
AATTGAAATGACAATGCACA+AGG + chr5_4:35828787-35828806 Msa0849290:intron 30.0%
AAAAAAGTTGACACTGATGT+AGG - chr5_4:35828891-35828910 None:intergenic 30.0%
GAGATCTGAATCATTTCTTA+GGG + chr5_4:35829047-35829066 Msa0849290:intron 30.0%
ATATACGAGCTGTTTACATT+TGG + chr5_4:35829120-35829139 Msa0849290:intron 30.0%
TATACGAGCTGTTTACATTT+GGG + chr5_4:35829121-35829140 Msa0849290:intron 30.0%
CAATGTTCATACTGAACATA+AGG - chr5_4:35829209-35829228 None:intergenic 30.0%
TTAAATTCCCAGACAAATGT+TGG - chr5_4:35829362-35829381 None:intergenic 30.0%
!! CACTTTGAAATAGTTATGGT+GGG - chr5_4:35829544-35829563 None:intergenic 30.0%
!! ACACTTTGAAATAGTTATGG+TGG - chr5_4:35829545-35829564 None:intergenic 30.0%
!! CGAACACTTTGAAATAGTTA+TGG - chr5_4:35829548-35829567 None:intergenic 30.0%
! TTTTAACCAATGACAAGGAT+TGG - chr5_4:35829611-35829630 None:intergenic 30.0%
GATAGAGATCATTAAGTACT+TGG - chr5_4:35829731-35829750 None:intergenic 30.0%
ATATAAGTCCACTATCTGTA+TGG - chr5_4:35830053-35830072 None:intergenic 30.0%
CAAAAATCAGTAGACAGATA+GGG - chr5_4:35830114-35830133 None:intergenic 30.0%
ACAAAAATCAGTAGACAGAT+AGG - chr5_4:35830115-35830134 None:intergenic 30.0%
ATTACTCTCATAGTCAAGAT+AGG - chr5_4:35830185-35830204 None:intergenic 30.0%
TAATCACATAATTGCTACAG+AGG + chr5_4:35830201-35830220 Msa0849290:intron 30.0%
AATCACATAATTGCTACAGA+GGG + chr5_4:35830202-35830221 Msa0849290:intron 30.0%
ATAACCGTTCACAATAAAAG+TGG + chr5_4:35830251-35830270 Msa0849290:intron 30.0%
! CAATAAAAGTGGTTTTCACT+TGG + chr5_4:35830262-35830281 Msa0849290:intron 30.0%
GAAGCTTAATTCACTATCAA+TGG - chr5_4:35830329-35830348 None:intergenic 30.0%
GAAATACATGGAAGAATTTG+GGG - chr5_4:35831035-35831054 None:intergenic 30.0%
GGAAATACATGGAAGAATTT+GGG - chr5_4:35831036-35831055 None:intergenic 30.0%
TGGAAATACATGGAAGAATT+TGG - chr5_4:35831037-35831056 None:intergenic 30.0%
AAATTCTTCCATGTATTTCC+AGG + chr5_4:35831036-35831055 Msa0849290:three_prime_UTR 30.0%
AATTCTTCCATGTATTTCCA+GGG + chr5_4:35831037-35831056 Msa0849290:three_prime_UTR 30.0%
! AACGGGTTTAAAGAATTACC+TGG - chr5_4:35824303-35824322 None:intergenic 35.0%
!!! TTAGTTTTGGTGCATGGTTT+CGG + chr5_4:35824462-35824481 Msa0849290:CDS 35.0%
GGCGAATAATGAGATTAAGA+AGG - chr5_4:35824506-35824525 None:intergenic 35.0%
ACTTCCTTAACTAATGCACA+TGG - chr5_4:35824687-35824706 None:intergenic 35.0%
ACAACTTATGACATGTCCAT+AGG - chr5_4:35824900-35824919 None:intergenic 35.0%
! CATTTACATGAACTTTTGGG+CGG - chr5_4:35825052-35825071 None:intergenic 35.0%
AGTAAATGCTCCAGTCATTA+TGG - chr5_4:35825233-35825252 None:intergenic 35.0%
! ATTGTAAGGGTCTTATAGCT+AGG + chr5_4:35825488-35825507 Msa0849290:intron 35.0%
AAACCAAATCCTCGTCAAAT+TGG + chr5_4:35825648-35825667 Msa0849290:CDS 35.0%
! CCATGTATCAAAAGTGTAGA+AGG - chr5_4:35825682-35825701 None:intergenic 35.0%
! CCTTCTACACTTTTGATACA+TGG + chr5_4:35825679-35825698 Msa0849290:CDS 35.0%
! GTTTTGTCTTGATGTCGTTA+AGG + chr5_4:35825719-35825738 Msa0849290:CDS 35.0%
!! TATTTTTGTGCAGGAGTTGT+AGG + chr5_4:35825916-35825935 Msa0849290:intron 35.0%
TTCATATAAAGAAGCAGCCT+TGG + chr5_4:35826010-35826029 Msa0849290:CDS 35.0%
!! CTTTGGAATGAACTGATGAA+AGG - chr5_4:35826045-35826064 None:intergenic 35.0%
GTTCATTCCAAAGATTGCTT+AGG + chr5_4:35826052-35826071 Msa0849290:CDS 35.0%
ATCTGTACCTAAGCAATCTT+TGG - chr5_4:35826062-35826081 None:intergenic 35.0%
TGTTATAGGGATACTTCTGT+TGG + chr5_4:35826158-35826177 Msa0849290:intron 35.0%
! TGTGAAGAACATTTTATGCC+AGG + chr5_4:35826217-35826236 Msa0849290:CDS 35.0%
TGTTAAGCTAGAAGAATACC+TGG - chr5_4:35826238-35826257 None:intergenic 35.0%
!!! TTCAGTTTTGAGCATCAACA+AGG - chr5_4:35826348-35826367 None:intergenic 35.0%
! CATTTTTCTCTGCTTATTGC+AGG - chr5_4:35826371-35826390 None:intergenic 35.0%
GAAAAATGCAAACACTCTGA+CGG + chr5_4:35826383-35826402 Msa0849290:intron 35.0%
AAAAATGCAAACACTCTGAC+GGG + chr5_4:35826384-35826403 Msa0849290:intron 35.0%
ATCGAGTATTATGAGATGCT+CGG - chr5_4:35826546-35826565 None:intergenic 35.0%
CATAGAGACTTGGGTATTAT+TGG - chr5_4:35826584-35826603 None:intergenic 35.0%
GGTTGAGTTATCTGTTGTTA+TGG - chr5_4:35826615-35826634 None:intergenic 35.0%
ATTCTGTAGGTTTCCCTTTA+CGG + chr5_4:35826648-35826667 Msa0849290:intron 35.0%
GTATAAGAGCTGGTTATTGA+TGG - chr5_4:35826675-35826694 None:intergenic 35.0%
AATAACCAGCTCTTATACCA+AGG + chr5_4:35826677-35826696 Msa0849290:intron 35.0%
! AAGAAGAAAATCTTGACTCG+AGG - chr5_4:35827428-35827447 None:intergenic 35.0%
AGGTTACAAATGTTGTCTTG+AGG - chr5_4:35827454-35827473 None:intergenic 35.0%
CATTTGTAACCTTGTGACTT+AGG + chr5_4:35827462-35827481 Msa0849290:intron 35.0%
AAAAGGCCACAGACAAAATT+AGG - chr5_4:35827754-35827773 None:intergenic 35.0%
TTATTCTATGAGGAAGGTCT+AGG - chr5_4:35827779-35827798 None:intergenic 35.0%
AGACCTTCCTCATAGAATAA+AGG + chr5_4:35827779-35827798 Msa0849290:intron 35.0%
! GAGTTTATTTGTTACTCAGG+AGG + chr5_4:35828069-35828088 Msa0849290:CDS 35.0%
AGGAAACTTACCATTACTTG+GGG - chr5_4:35828117-35828136 None:intergenic 35.0%
GAGGAAACTTACCATTACTT+GGG - chr5_4:35828118-35828137 None:intergenic 35.0%
! ATTTCTCTTGTTTCAGTGTC+CGG + chr5_4:35828205-35828224 Msa0849290:intron 35.0%
!!! TTACGGAGATTTTGATTCAG+TGG + chr5_4:35828283-35828302 Msa0849290:CDS 35.0%
TTCATTGTCCTTCCAAATGT+TGG + chr5_4:35828311-35828330 Msa0849290:CDS 35.0%
AAAAAGTGGAAGTCACAAAG+AGG - chr5_4:35828444-35828463 None:intergenic 35.0%
TCACACGTATATGTAGCAAT+AGG + chr5_4:35828479-35828498 Msa0849290:intron 35.0%
ATTAAGTATGTTAAGGGAGC+AGG + chr5_4:35828503-35828522 Msa0849290:intron 35.0%
AGGAACCTTGTAAGTTTCAA+GGG + chr5_4:35828523-35828542 Msa0849290:intron 35.0%
CACTAAGAAAGTAGCATACA+AGG + chr5_4:35828570-35828589 Msa0849290:intron 35.0%
CATGAGTTCTACATCTTTGT+AGG + chr5_4:35828679-35828698 Msa0849290:intron 35.0%
TTATGACTAGTATCTGTGTG+TGG - chr5_4:35828735-35828754 None:intergenic 35.0%
CAATAATCCTCTAACTGCAT+AGG + chr5_4:35828812-35828831 Msa0849290:intron 35.0%
GATTGCTTCTAACGTACATA+TGG - chr5_4:35828858-35828877 None:intergenic 35.0%
TTGACATCAACTTGACAAGA+AGG + chr5_4:35829024-35829043 Msa0849290:intron 35.0%
TGACATCAACTTGACAAGAA+GGG + chr5_4:35829025-35829044 Msa0849290:intron 35.0%
GGAGATCTGAATCATTTCTT+AGG + chr5_4:35829046-35829065 Msa0849290:intron 35.0%
!! ATATATTCACCTATTGGCTC+AGG - chr5_4:35829431-35829450 None:intergenic 35.0%
ATCTTCCAAAAAGGTTGACA+CGG + chr5_4:35829506-35829525 Msa0849290:intron 35.0%
ATCTATCTTTGGGTCATGTT+GGG + chr5_4:35829842-35829861 Msa0849290:intron 35.0%
GAACATTTACAAATGGTGCA+AGG - chr5_4:35829898-35829917 None:intergenic 35.0%
AAAGGGAACATGATTACATG+AGG - chr5_4:35829961-35829980 None:intergenic 35.0%
ATGACTTCTGAGCATGAAAA+GGG - chr5_4:35829978-35829997 None:intergenic 35.0%
AATGACTTCTGAGCATGAAA+AGG - chr5_4:35829979-35829998 None:intergenic 35.0%
AATATAGGGATGTGCATGAA+AGG - chr5_4:35830002-35830021 None:intergenic 35.0%
! GCAGATGTATCTGGAATATA+GGG - chr5_4:35830016-35830035 None:intergenic 35.0%
TCACTATCAATGGACATTTC+TGG - chr5_4:35830319-35830338 None:intergenic 35.0%
GAACCTATTGCAACATTAAG+TGG + chr5_4:35830447-35830466 Msa0849290:intron 35.0%
TGACCACTTAATGTTGCAAT+AGG - chr5_4:35830453-35830472 None:intergenic 35.0%
GTTAACTGTCCATTTCATGA+AGG + chr5_4:35830524-35830543 Msa0849290:intron 35.0%
CAAAAGAAAAAACCCACTCT+TGG - chr5_4:35830709-35830728 None:intergenic 35.0%
!! TTCCTTACTTTTCCTTCCAA+AGG - chr5_4:35830775-35830794 None:intergenic 35.0%
AATCAAGTCCTAAAGTTAGG+AGG - chr5_4:35830890-35830909 None:intergenic 35.0%
AGGAATCAAGTCCTAAAGTT+AGG - chr5_4:35830893-35830912 None:intergenic 35.0%
ATTCTTCCATGTATTTCCAG+GGG + chr5_4:35831038-35831057 Msa0849290:three_prime_UTR 35.0%
! GCATTGATGCAGTGAATCAA+TGG + chr5_4:35824073-35824092 Msa0849290:five_prime_UTR 40.0%
GAAAATGCAACGACACTGTT+TGG - chr5_4:35824218-35824237 None:intergenic 40.0%
! CTGGAGCTCTTCATTTTGAA+CGG - chr5_4:35824273-35824292 None:intergenic 40.0%
! AGAATTACCTGGTTTGAACC+TGG - chr5_4:35824292-35824311 None:intergenic 40.0%
GTACTTGTAGCATGTGGAAT+TGG + chr5_4:35824391-35824410 Msa0849290:intron 40.0%
TTGTAGCATGTGGAATTGGA+AGG + chr5_4:35824395-35824414 Msa0849290:intron 40.0%
TGTAGCATGTGGAATTGGAA+GGG + chr5_4:35824396-35824415 Msa0849290:intron 40.0%
TACCGATATTCAATGGACAC+CGG - chr5_4:35824527-35824546 None:intergenic 40.0%
TTAACTAATGCACATGGCAC+CGG - chr5_4:35824681-35824700 None:intergenic 40.0%
ACCAACCAGTTAAACTCAAG+TGG + chr5_4:35825088-35825107 Msa0849290:intron 40.0%
ACCACTTGAGTTTAACTGGT+TGG - chr5_4:35825092-35825111 None:intergenic 40.0%
TTCTCCAGAACAATTTGTCC+GGG - chr5_4:35825127-35825146 None:intergenic 40.0%
GTTCTCCAGAACAATTTGTC+CGG - chr5_4:35825128-35825147 None:intergenic 40.0%
! TTGGTAATCTGGAGTTTGGT+CGG - chr5_4:35825201-35825220 None:intergenic 40.0%
GTCATTATGGAAATGGGTCT+TGG - chr5_4:35825220-35825239 None:intergenic 40.0%
AGACCCATTTCCATAATGAC+TGG + chr5_4:35825220-35825239 Msa0849290:intron 40.0%
GCTCCAGTCATTATGGAAAT+GGG - chr5_4:35825226-35825245 None:intergenic 40.0%
TGCTCCAGTCATTATGGAAA+TGG - chr5_4:35825227-35825246 None:intergenic 40.0%
GTCTTATAGCTAGGTCTGTT+TGG + chr5_4:35825497-35825516 Msa0849290:intron 40.0%
ATCAATAGAGTATACGCGGT+GGG - chr5_4:35825604-35825623 None:intergenic 40.0%
TCTCCAATTTGACGAGGATT+TGG - chr5_4:35825654-35825673 None:intergenic 40.0%
AACAGAACCACAAATCTGCA+AGG + chr5_4:35825954-35825973 Msa0849290:CDS 40.0%
ACAGAACCACAAATCTGCAA+GGG + chr5_4:35825955-35825974 Msa0849290:CDS 40.0%
AGAATTCCCTTGCAGATTTG+TGG - chr5_4:35825964-35825983 None:intergenic 40.0%
ATGAAAGGTCTTGCATACCA+AGG - chr5_4:35826030-35826049 None:intergenic 40.0%
GACAGAAAGTAGGTGATTAG+AGG - chr5_4:35826436-35826455 None:intergenic 40.0%
AGAGATCAAGGACAGAAAGT+AGG - chr5_4:35826446-35826465 None:intergenic 40.0%
TGCTAGACAATGAGAGATCA+AGG - chr5_4:35826458-35826477 None:intergenic 40.0%
!!! GATAGCTAGCTTTTAAGGGA+GGG - chr5_4:35826490-35826509 None:intergenic 40.0%
!!! TGATAGCTAGCTTTTAAGGG+AGG - chr5_4:35826491-35826510 None:intergenic 40.0%
TCGAGTATTATGAGATGCTC+GGG - chr5_4:35826545-35826564 None:intergenic 40.0%
ATAATACTCGATGCGAGACT+TGG + chr5_4:35826554-35826573 Msa0849290:intron 40.0%
GGGTGATATCATAGAGACTT+GGG - chr5_4:35826593-35826612 None:intergenic 40.0%
TACAGAATGGCTGACCATAA+AGG - chr5_4:35826636-35826655 None:intergenic 40.0%
TTTATGGTCAGCCATTCTGT+AGG + chr5_4:35826635-35826654 Msa0849290:intron 40.0%
GTAAAGGGAAACCTACAGAA+TGG - chr5_4:35826649-35826668 None:intergenic 40.0%
TTCTGTAGGTTTCCCTTTAC+GGG + chr5_4:35826649-35826668 Msa0849290:intron 40.0%
CTTATACCAAGGATGGAAAC+CGG + chr5_4:35826688-35826707 Msa0849290:intron 40.0%
GAACATAAACACTTAGGGTG+TGG + chr5_4:35826884-35826903 Msa0849290:intron 40.0%
TTAGGGTGTGGTTGAATTGA+GGG + chr5_4:35826896-35826915 Msa0849290:intron 40.0%
TGTGGTTGAATTGAGGGTTT+AGG + chr5_4:35826902-35826921 Msa0849290:intron 40.0%
GTTGAATTGAGGGTTTAGGA+GGG + chr5_4:35826906-35826925 Msa0849290:intron 40.0%
TTGAATTGAGGGTTTAGGAG+GGG + chr5_4:35826907-35826926 Msa0849290:intron 40.0%
TCATTCTCTATCATTCTCCC+CGG + chr5_4:35827386-35827405 Msa0849290:intron 40.0%
! AGAAAATCTTGACTCGAGGA+CGG - chr5_4:35827424-35827443 None:intergenic 40.0%
TCGAAGAGATGCTTTCCAAA+TGG - chr5_4:35827498-35827517 None:intergenic 40.0%
TCGAGTCCAAAGTAATCCAA+GGG + chr5_4:35827543-35827562 Msa0849290:intron 40.0%
TACTTGTGCCTTGGTTGTAT+GGG - chr5_4:35827656-35827675 None:intergenic 40.0%
ATACTTGTGCCTTGGTTGTA+TGG - chr5_4:35827657-35827676 None:intergenic 40.0%
AGGCCTTTATTCTATGAGGA+AGG - chr5_4:35827785-35827804 None:intergenic 40.0%
AGCATGATACACATTGGAGA+TGG - chr5_4:35827851-35827870 None:intergenic 40.0%
GGAGGAAACTTACCATTACT+TGG - chr5_4:35828119-35828138 None:intergenic 40.0%
ACTTCCCATTTCCTCATGTA+GGG - chr5_4:35828144-35828163 None:intergenic 40.0%
AACTTCCCATTTCCTCATGT+AGG - chr5_4:35828145-35828164 None:intergenic 40.0%
CAGGAACCTTGTAAGTTTCA+AGG + chr5_4:35828522-35828541 Msa0849290:intron 40.0%
AGAGTAAGAGTAGTCATCTG+TGG + chr5_4:35828650-35828669 Msa0849290:intron 40.0%
GAAAACGAGCTCATCTATAG+AGG - chr5_4:35828967-35828986 None:intergenic 40.0%
TGAACATTGCGAATGTCAAC+AGG + chr5_4:35829220-35829239 Msa0849290:intron 40.0%
TGAATGCACCAACATTTGTC+TGG + chr5_4:35829351-35829370 Msa0849290:intron 40.0%
GAATGCACCAACATTTGTCT+GGG + chr5_4:35829352-35829371 Msa0849290:intron 40.0%
TTGACTCTTTCTACAGACAC+TGG - chr5_4:35829484-35829503 None:intergenic 40.0%
GAGTCAAGCATCTTCCAAAA+AGG + chr5_4:35829497-35829516 Msa0849290:intron 40.0%
AACCAATGACAAGGATTGGA+AGG - chr5_4:35829607-35829626 None:intergenic 40.0%
AACCATCTTGAGAGTGATAC+AGG - chr5_4:35829812-35829831 None:intergenic 40.0%
GATCTATCTTTGGGTCATGT+TGG + chr5_4:35829841-35829860 Msa0849290:intron 40.0%
! GGCAGATGTATCTGGAATAT+AGG - chr5_4:35830017-35830036 None:intergenic 40.0%
CTATCTGTATGGTCATGGTA+GGG - chr5_4:35830042-35830061 None:intergenic 40.0%
ACTATCTGTATGGTCATGGT+AGG - chr5_4:35830043-35830062 None:intergenic 40.0%
TACCATGACCATACAGATAG+TGG + chr5_4:35830042-35830061 Msa0849290:intron 40.0%
GCTCTGATAGTTACATCCAT+AGG + chr5_4:35830073-35830092 Msa0849290:intron 40.0%
GTTACATCCATAGGTTGTAC+AGG + chr5_4:35830082-35830101 Msa0849290:intron 40.0%
GTGCTTCATCCTTCATGAAA+TGG - chr5_4:35830536-35830555 None:intergenic 40.0%
TGGGGTAAGAGATGAAGATT+TGG - chr5_4:35830604-35830623 None:intergenic 40.0%
AGGGAATCAATCAACTGATG+GGG - chr5_4:35830622-35830641 None:intergenic 40.0%
CAGGGAATCAATCAACTGAT+GGG - chr5_4:35830623-35830642 None:intergenic 40.0%
ACAGGGAATCAATCAACTGA+TGG - chr5_4:35830624-35830643 None:intergenic 40.0%
CATCAAGAAAGTGACTGACA+GGG - chr5_4:35830641-35830660 None:intergenic 40.0%
ATACACGATTTCAATGTGCC+CGG - chr5_4:35830667-35830686 None:intergenic 40.0%
AAGAAAAAACCCACTCTTGG+TGG - chr5_4:35830706-35830725 None:intergenic 40.0%
TCCATCGAAAGATTCACCTT+TGG + chr5_4:35830756-35830775 Msa0849290:three_prime_UTR 40.0%
TCCAAAGGTGAATCTTTCGA+TGG - chr5_4:35830760-35830779 None:intergenic 40.0%
TCGAAAGATTCACCTTTGGA+AGG + chr5_4:35830760-35830779 Msa0849290:three_prime_UTR 40.0%
! CACCTTTGGAAGGAAAAGTA+AGG + chr5_4:35830770-35830789 Msa0849290:three_prime_UTR 40.0%
TCCTTGTACTCTCCTATAGA+AGG + chr5_4:35830909-35830928 Msa0849290:three_prime_UTR 40.0%
! TCCTTCTATAGGAGAGTACA+AGG - chr5_4:35830913-35830932 None:intergenic 40.0%
TGAAACACTGCTCCTTCTAT+AGG - chr5_4:35830924-35830943 None:intergenic 40.0%
CTACATCGTATTAGAGTCCT+AGG + chr5_4:35830980-35830999 Msa0849290:three_prime_UTR 40.0%
GGAAGAATTTGGGGAATAGA+GGG - chr5_4:35831026-35831045 None:intergenic 40.0%
TGGAAGAATTTGGGGAATAG+AGG - chr5_4:35831027-35831046 None:intergenic 40.0%
TTTCTACCCCTGGAAATACA+TGG - chr5_4:35831047-35831066 None:intergenic 40.0%
! TCTACACATTTTTCTACCCC+TGG - chr5_4:35831057-35831076 None:intergenic 40.0%
ACTCGAGCACATGAATAGAG+TGG + chr5_4:35824018-35824037 Msa0849290:five_prime_UTR 45.0%
AGAGGATAGTGTTCGAGGAT+GGG - chr5_4:35824168-35824187 None:intergenic 45.0%
AAGAGGATAGTGTTCGAGGA+TGG - chr5_4:35824169-35824188 None:intergenic 45.0%
GAGTAAGAGGATAGTGTTCG+AGG - chr5_4:35824173-35824192 None:intergenic 45.0%
CGTTCAAAATGAAGAGCTCC+AGG + chr5_4:35824271-35824290 Msa0849290:CDS 45.0%
!! CAACGGTCCTGCATTAGTTT+TGG + chr5_4:35824449-35824468 Msa0849290:CDS 45.0%
CCATGCACCAAAACTAATGC+AGG - chr5_4:35824459-35824478 None:intergenic 45.0%
!!! CCTGCATTAGTTTTGGTGCA+TGG + chr5_4:35824456-35824475 Msa0849290:CDS 45.0%
! GGTGCCATGTGCATTAGTTA+AGG + chr5_4:35824680-35824699 Msa0849290:intron 45.0%
TGCTATCTAGGAGAGCTTAG+AGG + chr5_4:35824859-35824878 Msa0849290:intron 45.0%
AGTGGTTAATGAGATCCACC+CGG + chr5_4:35825106-35825125 Msa0849290:intron 45.0%
!! TTCCACTCTGGAATCGAACT+CGG - chr5_4:35825150-35825169 None:intergenic 45.0%
! TGGTAATCTGGAGTTTGGTC+GGG - chr5_4:35825200-35825219 None:intergenic 45.0%
! GGTCTTGGTAATCTGGAGTT+TGG - chr5_4:35825205-35825224 None:intergenic 45.0%
! GGAAATGGGTCTTGGTAATC+TGG - chr5_4:35825212-35825231 None:intergenic 45.0%
TAAAGAAACAGGTTTCCCCC+TGG - chr5_4:35825314-35825333 None:intergenic 45.0%
! CTGGAATGTTTTTCCTCCAG+TGG - chr5_4:35825569-35825588 None:intergenic 45.0%
GATCAATAGAGTATACGCGG+TGG - chr5_4:35825605-35825624 None:intergenic 45.0%
GAATCGTCTCCAATTTGACG+AGG - chr5_4:35825660-35825679 None:intergenic 45.0%
AGGTGATTAGAGGCTGTTGA+GGG - chr5_4:35826426-35826445 None:intergenic 45.0%
TAGGTGATTAGAGGCTGTTG+AGG - chr5_4:35826427-35826446 None:intergenic 45.0%
CTCTCATTGTCTAGCACTTG+AGG + chr5_4:35826462-35826481 Msa0849290:intron 45.0%
TGCTCGGGCAAGTATTTAAG+AGG - chr5_4:35826530-35826549 None:intergenic 45.0%
GGGGTGATATCATAGAGACT+TGG - chr5_4:35826594-35826613 None:intergenic 45.0%
! GGTTATTGATGGCCCGTAAA+GGG - chr5_4:35826664-35826683 None:intergenic 45.0%
! TGGTTATTGATGGCCCGTAA+AGG - chr5_4:35826665-35826684 None:intergenic 45.0%
ACCAGCTCTTATACCAAGGA+TGG + chr5_4:35826681-35826700 Msa0849290:intron 45.0%
TCCATCCTTGGTATAAGAGC+TGG - chr5_4:35826685-35826704 None:intergenic 45.0%
CTTAGGGTGTGGTTGAATTG+AGG + chr5_4:35826895-35826914 Msa0849290:intron 45.0%
GGTTGAATTGAGGGTTTAGG+AGG + chr5_4:35826905-35826924 Msa0849290:intron 45.0%
TTTGGATGGAGGGTTTAGGA+GGG - chr5_4:35827115-35827134 None:intergenic 45.0%
TGTGTTTGGATGGAGGGTTT+AGG - chr5_4:35827119-35827138 None:intergenic 45.0%
! TAAGGGTGTGTTTGGATGGA+GGG - chr5_4:35827125-35827144 None:intergenic 45.0%
! TCACTAAGGGTGTGTTTGGA+TGG - chr5_4:35827129-35827148 None:intergenic 45.0%
! CTCATCACTAAGGGTGTGTT+TGG - chr5_4:35827133-35827152 None:intergenic 45.0%
CATTCTCTATCATTCTCCCC+GGG + chr5_4:35827387-35827406 Msa0849290:intron 45.0%
! GAAAATCTTGACTCGAGGAC+GGG - chr5_4:35827423-35827442 None:intergenic 45.0%
ACTTTGGACTCGACAACTGA+AGG - chr5_4:35827536-35827555 None:intergenic 45.0%
GTCGAGTCCAAAGTAATCCA+AGG + chr5_4:35827542-35827561 Msa0849290:intron 45.0%
ATCTTCCCAAGAGAGAGAGA+GGG + chr5_4:35827582-35827601 Msa0849290:intron 45.0%
GCATTTGGATACTTGTGCCT+TGG - chr5_4:35827665-35827684 None:intergenic 45.0%
ATATAGAGCATGGGAGGGTT+AGG - chr5_4:35827687-35827706 None:intergenic 45.0%
CCACAGACAAAATTAGGCCT+AGG - chr5_4:35827748-35827767 None:intergenic 45.0%
! CCTAGGCCTAATTTTGTCTG+TGG + chr5_4:35827745-35827764 Msa0849290:intron 45.0%
TGAGGAAGGTCTAGGAGAAA+AGG - chr5_4:35827771-35827790 None:intergenic 45.0%
!! TGGAAGTGTCATGATAGCAC+TGG - chr5_4:35827978-35827997 None:intergenic 45.0%
!! AGTGTCCGGTTTTGATAGCA+TGG + chr5_4:35828219-35828238 Msa0849290:intron 45.0%
!! GTGTCCGGTTTTGATAGCAT+GGG + chr5_4:35828220-35828239 Msa0849290:intron 45.0%
!! TGTCCGGTTTTGATAGCATG+GGG + chr5_4:35828221-35828240 Msa0849290:CDS 45.0%
TCACCCCATGCTATCAAAAC+CGG - chr5_4:35828227-35828246 None:intergenic 45.0%
! TTTGATAGCATGGGGTGACA+AGG + chr5_4:35828229-35828248 Msa0849290:CDS 45.0%
GCATGAGAGAAAGAACCTGA+GGG - chr5_4:35828343-35828362 None:intergenic 45.0%
TCATTGGGAGTTTGACAGAG+CGG - chr5_4:35828989-35829008 None:intergenic 45.0%
!!! TCTTAGGGAGAGAGTGCTTT+TGG + chr5_4:35829062-35829081 Msa0849290:intron 45.0%
AAGGATCACTGATGCGTGAT+TGG - chr5_4:35829190-35829209 None:intergenic 45.0%
!! AAGTGACGAGCTTTGAGCTA+AGG + chr5_4:35829273-35829292 Msa0849290:intron 45.0%
TGATGCTTTCCTGAGCCAAT+AGG + chr5_4:35829419-35829438 Msa0849290:intron 45.0%
AGACACTGGAACTCATTGCA+AGG - chr5_4:35829470-35829489 None:intergenic 45.0%
! TAGCACCGTGTCAACCTTTT+TGG - chr5_4:35829514-35829533 None:intergenic 45.0%
! AAGGTTGACACGGTGCTAAA+AGG + chr5_4:35829516-35829535 Msa0849290:intron 45.0%
GACCTTCCAATCCTTGTCAT+TGG + chr5_4:35829602-35829621 Msa0849290:intron 45.0%
CTGATAGGTCCATAACCACT+GGG - chr5_4:35829667-35829686 None:intergenic 45.0%
TCTGATAGGTCCATAACCAC+TGG - chr5_4:35829668-35829687 None:intergenic 45.0%
GACCTGTATCACTCTCAAGA+TGG + chr5_4:35829807-35829826 Msa0849290:intron 45.0%
CATGATTACATGAGGCCCAT+GGG - chr5_4:35829953-35829972 None:intergenic 45.0%
ACATGATTACATGAGGCCCA+TGG - chr5_4:35829954-35829973 None:intergenic 45.0%
GTCCACTATCTGTATGGTCA+TGG - chr5_4:35830047-35830066 None:intergenic 45.0%
GTGAGTACCTGTACAACCTA+TGG - chr5_4:35830092-35830111 None:intergenic 45.0%
! ACAAGTGGGTTCACAAGTTG+AGG - chr5_4:35830558-35830577 None:intergenic 45.0%
TCAACTTGTGAACCCACTTG+TGG + chr5_4:35830557-35830576 Msa0849290:CDS 45.0%
CCACAAATGACTCCACAAGT+GGG - chr5_4:35830572-35830591 None:intergenic 45.0%
TTGTGGAGTCATTTGTGGCA+CGG + chr5_4:35830574-35830593 Msa0849290:CDS 45.0%
GCATCAAGAAAGTGACTGAC+AGG - chr5_4:35830642-35830661 None:intergenic 45.0%
! AGTCACTTTCTTGATGCTGC+CGG + chr5_4:35830645-35830664 Msa0849290:three_prime_UTR 45.0%
TCATTTGCTTCCACCAAGAG+TGG + chr5_4:35830693-35830712 Msa0849290:three_prime_UTR 45.0%
CATTTGCTTCCACCAAGAGT+GGG + chr5_4:35830694-35830713 Msa0849290:three_prime_UTR 45.0%
ATGGGAGAGAGTGAGAGTAG+TGG - chr5_4:35824150-35824169 None:intergenic 50.0%
GCAACGACACTGTTTGGTTG+AGG - chr5_4:35824212-35824231 None:intergenic 50.0%
AAGAGCTCCAGGTTCAAACC+AGG + chr5_4:35824282-35824301 Msa0849290:CDS 50.0%
TGCATGGTTTCGGAGCTAAC+AGG + chr5_4:35824472-35824491 Msa0849290:CDS 50.0%
CGCCGGTGTCCATTGAATAT+CGG + chr5_4:35824522-35824541 Msa0849290:intron 50.0%
TATCTCGGCTTCGTAGCTGT+TGG + chr5_4:35824577-35824596 Msa0849290:intron 50.0%
TCCACCCGGACAAATTGTTC+TGG + chr5_4:35825120-35825139 Msa0849290:intron 50.0%
TCCAGAACAATTTGTCCGGG+TGG - chr5_4:35825124-35825143 None:intergenic 50.0%
AACCGAGTTCGATTCCAGAG+TGG + chr5_4:35825145-35825164 Msa0849290:intron 50.0%
! TAATCTGGAGTTTGGTCGGG+AGG - chr5_4:35825197-35825216 None:intergenic 50.0%
CACTTCATTGCAGTGACCAC+TGG + chr5_4:35825550-35825569 Msa0849290:intron 50.0%
TTCATTGCAGTGACCACTGG+AGG + chr5_4:35825553-35825572 Msa0849290:intron 50.0%
! ATACGCGGTGGGATTTTGCT+AGG - chr5_4:35825593-35825612 None:intergenic 50.0%
TGCAGGAGTTGTAGGTCTTC+AGG + chr5_4:35825924-35825943 Msa0849290:intron 50.0%
! TTCAGACCGGTTTCCATCCT+TGG - chr5_4:35826697-35826716 None:intergenic 50.0%
TGGGAATGAGCATCCAGAAG+AGG + chr5_4:35826763-35826782 Msa0849290:intron 50.0%
GCATCCAGAAGAGGAGTTAC+TGG + chr5_4:35826772-35826791 Msa0849290:intron 50.0%
TGAGCCAGTAACTCCTCTTC+TGG - chr5_4:35826779-35826798 None:intergenic 50.0%
!! GAAGAGGAGTTACTGGCTCA+CGG + chr5_4:35826779-35826798 Msa0849290:intron 50.0%
ATTGAGGGTTTAGGAGGGGA+AGG + chr5_4:35826911-35826930 Msa0849290:intron 50.0%
TTGAGGGTTTAGGAGGGGAA+GGG + chr5_4:35826912-35826931 Msa0849290:intron 50.0%
TGGAGGGTTTAGGAGGGAAA+GGG - chr5_4:35827109-35827128 None:intergenic 50.0%
ATGGAGGGTTTAGGAGGGAA+AGG - chr5_4:35827110-35827129 None:intergenic 50.0%
GTTTGGATGGAGGGTTTAGG+AGG - chr5_4:35827116-35827135 None:intergenic 50.0%
! CTAAGGGTGTGTTTGGATGG+AGG - chr5_4:35827126-35827145 None:intergenic 50.0%
CATCTTCCCAAGAGAGAGAG+AGG + chr5_4:35827581-35827600 Msa0849290:intron 50.0%
TGCACTCTCAGACTACTAGG+TGG - chr5_4:35827623-35827642 None:intergenic 50.0%
GACTGCACTCTCAGACTACT+AGG - chr5_4:35827626-35827645 None:intergenic 50.0%
CTCTCTCTCCCATACAACCA+AGG + chr5_4:35827645-35827664 Msa0849290:intron 50.0%
TGCAGCTGATCCTTAGTCCA+GGG + chr5_4:35828016-35828035 Msa0849290:CDS 50.0%
AGAAAGACATCTACAGCGCC+AGG - chr5_4:35828048-35828067 None:intergenic 50.0%
GGAACTGCTACCCCAAGTAA+TGG + chr5_4:35828104-35828123 Msa0849290:CDS 50.0%
ATTTCCTCATGTAGGGTGGG+AGG - chr5_4:35828137-35828156 None:intergenic 50.0%
TCCCACCCTACATGAGGAAA+TGG + chr5_4:35828136-35828155 Msa0849290:intron 50.0%
CCCATTTCCTCATGTAGGGT+GGG - chr5_4:35828140-35828159 None:intergenic 50.0%
CCCACCCTACATGAGGAAAT+GGG + chr5_4:35828137-35828156 Msa0849290:intron 50.0%
TCCCATTTCCTCATGTAGGG+TGG - chr5_4:35828141-35828160 None:intergenic 50.0%
ATGGGGTGACAAGGATCCTT+GGG + chr5_4:35828238-35828257 Msa0849290:CDS 50.0%
TCCTTGGGAGCCAATTGAGA+TGG + chr5_4:35828253-35828272 Msa0849290:CDS 50.0%
CCTTGGGAGCCAATTGAGAT+GGG + chr5_4:35828254-35828273 Msa0849290:CDS 50.0%
GGCAATGGCCAACATTTGGA+AGG - chr5_4:35828322-35828341 None:intergenic 50.0%
TGAGGGCAATGGCCAACATT+TGG - chr5_4:35828326-35828345 None:intergenic 50.0%
AAATGTTGGCCATTGCCCTC+AGG + chr5_4:35828325-35828344 Msa0849290:CDS 50.0%
GAGAAAGAACCTGAGGGCAA+TGG - chr5_4:35828337-35828356 None:intergenic 50.0%
GGCATGAGAGAAAGAACCTG+AGG - chr5_4:35828344-35828363 None:intergenic 50.0%
TCCTCTAACTGCATAGGCAG+CGG + chr5_4:35828818-35828837 Msa0849290:intron 50.0%
!! GACGAGCTTTGAGCTAAGGA+TGG + chr5_4:35829277-35829296 Msa0849290:intron 50.0%
TGGAACTCATTGCAAGGCGA+GGG - chr5_4:35829464-35829483 None:intergenic 50.0%
! TTAACTTGACAGCCACCCAG+TGG + chr5_4:35829649-35829668 Msa0849290:intron 50.0%
ATAGGTCCATAACCACTGGG+TGG - chr5_4:35829664-35829683 None:intergenic 50.0%
TACAGGTCAGACAAGCCTGT+CGG - chr5_4:35829795-35829814 None:intergenic 50.0%
CCCACTTGTGGAGTCATTTG+TGG + chr5_4:35830569-35830588 Msa0849290:CDS 50.0%
GCCACAAATGACTCCACAAG+TGG - chr5_4:35830573-35830592 None:intergenic 50.0%
! GTCACTTTCTTGATGCTGCC+GGG + chr5_4:35830646-35830665 Msa0849290:three_prime_UTR 50.0%
GGAGAGAGTGAGAGTAGTGG+TGG - chr5_4:35824147-35824166 None:intergenic 55.0%
GGAAACGCTAACAAGTGCCC+TGG - chr5_4:35824816-35824835 None:intergenic 55.0%
! CGGTGGGATTTTGCTAGGTC+TGG - chr5_4:35825588-35825607 None:intergenic 55.0%
! ATGCAAACACTCTGACGGGC+TGG + chr5_4:35826388-35826407 Msa0849290:intron 55.0%
!! GTTACTGGCTCACGGACAGA+AGG + chr5_4:35826787-35826806 Msa0849290:intron 55.0%
GGCTCACGGACAGAAGGAAA+AGG + chr5_4:35826793-35826812 Msa0849290:intron 55.0%
GGTTTAGGAGGGAAAGGGAG+GGG - chr5_4:35827104-35827123 None:intergenic 55.0%
GGGTTTAGGAGGGAAAGGGA+GGG - chr5_4:35827105-35827124 None:intergenic 55.0%
AGGGTTTAGGAGGGAAAGGG+AGG - chr5_4:35827106-35827125 None:intergenic 55.0%
AGGACGGGTCTCTTCTAACC+CGG - chr5_4:35827408-35827427 None:intergenic 55.0%
TTCCCAAGAGAGAGAGAGGG+AGG + chr5_4:35827585-35827604 Msa0849290:intron 55.0%
TCCCAAGAGAGAGAGAGGGA+GGG + chr5_4:35827586-35827605 Msa0849290:intron 55.0%
TCCCTCCCTCTCTCTCTCTT+GGG - chr5_4:35827590-35827609 None:intergenic 55.0%
AAGAGAGAGAGAGGGAGGGA+GGG + chr5_4:35827590-35827609 Msa0849290:intron 55.0%
GCATGGGAGGGTTAGGCATT+TGG - chr5_4:35827680-35827699 None:intergenic 55.0%
GTGCAGCTGATCCTTAGTCC+AGG + chr5_4:35828015-35828034 Msa0849290:CDS 55.0%
TTACTCAGGAGGCCCTCTTC+CGG + chr5_4:35828080-35828099 Msa0849290:CDS 55.0%
GTAGCAGTTCCTCCGGAAGA+GGG - chr5_4:35828095-35828114 None:intergenic 55.0%
ACTTGGGGTAGCAGTTCCTC+CGG - chr5_4:35828102-35828121 None:intergenic 55.0%
GTTTCCTCCCACCCTACATG+AGG + chr5_4:35828130-35828149 Msa0849290:intron 55.0%
CATGGGGTGACAAGGATCCT+TGG + chr5_4:35828237-35828256 Msa0849290:CDS 55.0%
! CCCATCTCAATTGGCTCCCA+AGG - chr5_4:35828257-35828276 None:intergenic 55.0%
CCTCTAACTGCATAGGCAGC+GGG + chr5_4:35828819-35828838 Msa0849290:intron 55.0%
CTCTAACTGCATAGGCAGCG+GGG + chr5_4:35828820-35828839 Msa0849290:intron 55.0%
CTGGAACTCATTGCAAGGCG+AGG - chr5_4:35829465-35829484 None:intergenic 55.0%
TGACAGCCACCCAGTGGTTA+TGG + chr5_4:35829655-35829674 Msa0849290:intron 55.0%
ACAGGTCAGACAAGCCTGTC+GGG - chr5_4:35829794-35829813 None:intergenic 55.0%
! GTAGGGCTGGCAGATGTATC+TGG - chr5_4:35830025-35830044 None:intergenic 55.0%
CTGTATGGTCATGGTAGGGC+TGG - chr5_4:35830038-35830057 None:intergenic 55.0%
!! CACTCTGACGGGCTGGTTTC+TGG + chr5_4:35826395-35826414 Msa0849290:intron 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr5_4:35826915-35826934 Msa0849290:intron 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr5_4:35826916-35826935 Msa0849290:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr5_4:35826917-35826936 Msa0849290:intron 60.0%
TAGGAGGGAAAGGGAGGGGA+GGG - chr5_4:35827100-35827119 None:intergenic 60.0%
TTAGGAGGGAAAGGGAGGGG+AGG - chr5_4:35827101-35827120 None:intergenic 60.0%
GACGGGTCTCTTCTAACCCG+GGG - chr5_4:35827406-35827425 None:intergenic 60.0%
GGACGGGTCTCTTCTAACCC+GGG - chr5_4:35827407-35827426 None:intergenic 60.0%
CTCCCTCCCTCTCTCTCTCT+TGG - chr5_4:35827591-35827610 None:intergenic 60.0%
CAAGAGAGAGAGAGGGAGGG+AGG + chr5_4:35827589-35827608 Msa0849290:intron 60.0%
GCTGATCCTTAGTCCAGGGC+TGG + chr5_4:35828020-35828039 Msa0849290:CDS 60.0%
CAGGTTCCAGCCCTGGACTA+AGG - chr5_4:35828029-35828048 None:intergenic 60.0%
CTTAGTCCAGGGCTGGAACC+TGG + chr5_4:35828027-35828046 Msa0849290:CDS 60.0%
GGTAGCAGTTCCTCCGGAAG+AGG - chr5_4:35828096-35828115 None:intergenic 60.0%
CCCGCTGCCTATGCAGTTAG+AGG - chr5_4:35828822-35828841 None:intergenic 60.0%
CTGCATAGGCAGCGGGGAAA+AGG + chr5_4:35828826-35828845 Msa0849290:intron 60.0%
CTGTTCTAGCGTCTCCCGAC+AGG + chr5_4:35829777-35829796 Msa0849290:intron 60.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr5_4:35826920-35826939 Msa0849290:intron 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr5_4:35826921-35826940 Msa0849290:intron 65.0%
AGAGAGAGGGAGGGAGGGAG+AGG + chr5_4:35827595-35827614 Msa0849290:intron 65.0%
ACAGCGCCAGGTTCCAGCCC+TGG - chr5_4:35828036-35828055 None:intergenic 70.0%
CTCAGGAGGCCCTCTTCCGG+AGG + chr5_4:35828083-35828102 Msa0849290:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 35824008 35831086 35824008 ID=Msa0849290;Name=Msa0849290
chr5_4 mRNA 35824008 35831086 35824008 ID=Msa0849290-mRNA-1;Parent=Msa0849290;Name=Msa0849290-mRNA-1;_AED=0.17;_eAED=0.17;_QI=123|1|1|1|1|1|8|451|352
chr5_4 exon 35824008 35824303 35824008 ID=Msa0849290-mRNA-1:exon:11946;Parent=Msa0849290-mRNA-1
chr5_4 exon 35824401 35824493 35824401 ID=Msa0849290-mRNA-1:exon:11947;Parent=Msa0849290-mRNA-1
chr5_4 exon 35825563 35825774 35825563 ID=Msa0849290-mRNA-1:exon:11948;Parent=Msa0849290-mRNA-1
chr5_4 exon 35825929 35826073 35825929 ID=Msa0849290-mRNA-1:exon:11949;Parent=Msa0849290-mRNA-1
chr5_4 exon 35826166 35826238 35826166 ID=Msa0849290-mRNA-1:exon:11950;Parent=Msa0849290-mRNA-1
chr5_4 exon 35827979 35828125 35827979 ID=Msa0849290-mRNA-1:exon:11951;Parent=Msa0849290-mRNA-1
chr5_4 exon 35828221 35828346 35828221 ID=Msa0849290-mRNA-1:exon:11952;Parent=Msa0849290-mRNA-1
chr5_4 exon 35830546 35831086 35830546 ID=Msa0849290-mRNA-1:exon:11953;Parent=Msa0849290-mRNA-1
chr5_4 five_prime_UTR 35824008 35824130 35824008 ID=Msa0849290-mRNA-1:five_prime_utr;Parent=Msa0849290-mRNA-1
chr5_4 CDS 35824131 35824303 35824131 ID=Msa0849290-mRNA-1:cds;Parent=Msa0849290-mRNA-1
chr5_4 CDS 35824401 35824493 35824401 ID=Msa0849290-mRNA-1:cds;Parent=Msa0849290-mRNA-1
chr5_4 CDS 35825563 35825774 35825563 ID=Msa0849290-mRNA-1:cds;Parent=Msa0849290-mRNA-1
chr5_4 CDS 35825929 35826073 35825929 ID=Msa0849290-mRNA-1:cds;Parent=Msa0849290-mRNA-1
chr5_4 CDS 35826166 35826238 35826166 ID=Msa0849290-mRNA-1:cds;Parent=Msa0849290-mRNA-1
chr5_4 CDS 35827979 35828125 35827979 ID=Msa0849290-mRNA-1:cds;Parent=Msa0849290-mRNA-1
chr5_4 CDS 35828221 35828346 35828221 ID=Msa0849290-mRNA-1:cds;Parent=Msa0849290-mRNA-1
chr5_4 CDS 35830546 35830635 35830546 ID=Msa0849290-mRNA-1:cds;Parent=Msa0849290-mRNA-1
chr5_4 three_prime_UTR 35830636 35831086 35830636 ID=Msa0849290-mRNA-1:three_prime_utr;Parent=Msa0849290-mRNA-1
Gene Sequence

>Msa0849290

ATGACATTTGCTTCCACCACTACTCTCACTCTCTCCCATCCTCGAACACTATCCTCTTACTCCAAAAAAATTCGTTCTCCTCAACCAAACAGTGTCGTTGCATTTTCTAGTTTCAGTAATCAAATTGTTTCCAAATTAACCGTTCAAAATGAAGAGCTCCAGGTTCAAACCAGCATGTGGAATTGGAAGGGTTACAATATTCGCTATCAATATTCTGGGAACAACGGTCCTGCATTAGTTTTGGTGCATGGTTTCGGAGCTAACAGTGACCACTGGAGGAAAAACATTCCAGACCTAGCAAAATCCCACCGCGTATACTCTATTGATCTTATTGGATATGGATATTCAGACAAACCAAATCCTCGTCAAATTGGAGACGATTCCTTCTACACTTTTGATACATGGGCCGCACAATTAAATGAGTTTTGTCTTGATGTCGTTAAGGATGAAGCATTCTTTATATGCAATTCTATTGGAGGAGTTGTAGGTCTTCAGGCAGCTATAACAGAACCACAAATCTGCAAGGGAATTCTCCTTCTTAATATATCTTTGCGTATGCTTCATATAAAGAAGCAGCCTTGGTATGCAAGACCTTTCATCAGTTCATTCCAAAGATTGCTTAGGGATACTTCTGTTGGAAAATTCTTCTTTAAAGCTGTTGCAACGAAAGAATCTGTGAAGAACATTTTATGCCAGTGCTATCATGACACTTCCAAAGTGACTGATGAGCTAGTGCAGCTGATCCTTAGTCCAGGGCTGGAACCTGGCGCTGTAGATGTCTTTCTTGAGTTTATTTGTTACTCAGGAGGCCCTCTTCCGGAGGAACTGCTACCCCAAGTAATGTGTCCGGTTTTGATAGCATGGGGTGACAAGGATCCTTGGGAGCCAATTGAGATGGGAAGAAATTACGGAGATTTTGATTCAGTGGAAGACTTCATTGTCCTTCCAAATGTTGGCCATTGCCCTCAGGATGAAGCACCTCAACTTGTGAACCCACTTGTGGAGTCATTTGTGGCACGGCATGCCAAATCTTCATCTCTTACCCCATCAGTTGATTGA

Protein sequence

>Msa0849290

MTFASTTTLTLSHPRTLSSYSKKIRSPQPNSVVAFSSFSNQIVSKLTVQNEELQVQTSMWNWKGYNIRYQYSGNNGPALVLVHGFGANSDHWRKNIPDLAKSHRVYSIDLIGYGYSDKPNPRQIGDDSFYTFDTWAAQLNEFCLDVVKDEAFFICNSIGGVVGLQAAITEPQICKGILLLNISLRMLHIKKQPWYARPFISSFQRLLRDTSVGKFFFKAVATKESVKNILCQCYHDTSKVTDELVQLILSPGLEPGAVDVFLEFICYSGGPLPEELLPQVMCPVLIAWGDKDPWEPIEMGRNYGDFDSVEDFIVLPNVGHCPQDEAPQLVNPLVESFVARHAKSSSLTPSVD*