Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365850 | XP_003599303.2 | 95.000 | 380 | 19 | 0 | 1 | 380 | 1 | 380 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365850 | sp|Q8R3F5|FABD_MOUSE | 39.672 | 305 | 174 | 4 | 77 | 373 | 61 | 363 | 3.87e-69 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365850 | G7J0N6 | 95.000 | 380 | 19 | 0 | 1 | 380 | 1 | 380 | 0.0 | 723 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032120 | Msa0365850 | 0.801685 | 8.014285e-49 | -8.615850e-47 |
| Msa0185700 | Msa0365850 | 0.801826 | 7.497435e-49 | -8.615850e-47 |
| Msa0365850 | Msa0413720 | 0.881114 | 3.141689e-70 | -8.615850e-47 |
| Msa0365850 | Msa0425940 | 0.801958 | 7.042857e-49 | -8.615850e-47 |
| Msa0365850 | Msa0426160 | 0.806804 | 6.884058e-50 | -8.615850e-47 |
| Msa0365850 | Msa0505370 | 0.881141 | 3.070381e-70 | -8.615850e-47 |
| Msa0365850 | Msa0825020 | 0.817525 | 3.152341e-52 | -8.615850e-47 |
| Msa0365850 | Msa0864310 | 0.831680 | 1.455253e-55 | -8.615850e-47 |
| Msa0365850 | Msa1226620 | 0.881862 | 1.686438e-70 | -8.615850e-47 |
| Msa0365850 | Msa1284520 | 0.806823 | 6.822309e-50 | -8.615850e-47 |
| Msa0365850 | Msa1324000 | 0.828677 | 7.869140e-55 | -8.615850e-47 |
| Msa0365850 | Msa1379570 | 0.811404 | 7.121392e-51 | -8.615850e-47 |
| Msa0365850 | Msa1382310 | 0.803654 | 3.143706e-49 | -8.615850e-47 |
| Msa0365850 | Msa1398480 | 0.812487 | 4.136239e-51 | -8.615850e-47 |
| Msa0277630 | Msa0365850 | 0.817494 | 3.203017e-52 | -8.615850e-47 |
| Msa0317310 | Msa0365850 | 0.801322 | 9.510169e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365850 | MtrunA17_Chr3g0106261 | 95.000 | 380 | 19 | 0 | 1 | 380 | 1 | 380 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365850 | AT2G30200.1 | 80.814 | 344 | 65 | 1 | 38 | 380 | 50 | 393 | 0.0 | 556 |
| Msa0365850 | AT2G30200.2 | 80.068 | 296 | 58 | 1 | 38 | 332 | 50 | 345 | 4.36e-168 | 474 |
Find 125 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCGTTTGCTGGGGCTTTC+AGG | 0.094720 | 3_1:+60132772 | Msa0365850:CDS |
| CAAGAAAGCCAATGAGATTT+TGG | 0.134267 | 3_1:+60131157 | Msa0365850:CDS |
| CTTCTTGATGTATGCATTAA+TGG | 0.181932 | 3_1:+60131277 | Msa0365850:CDS |
| GCATTCAAATGTTGGATTTA+TGG | 0.185585 | 3_1:-60130736 | None:intergenic |
| TTATTTCATCTAAAATTTAT+TGG | 0.214877 | 3_1:-60134682 | None:intergenic |
| TATACTGCTCTGGCGTTTGC+TGG | 0.229112 | 3_1:+60132762 | Msa0365850:CDS |
| CATTCAAATGTTGGATTTAT+GGG | 0.229579 | 3_1:-60130735 | None:intergenic |
| GTGGCGAAAACCCTAGATTT+AGG | 0.242064 | 3_1:-60130899 | None:intergenic |
| CAGGTGCGCCTGGCTGTTGC+AGG | 0.273267 | 3_1:+60133875 | Msa0365850:intron |
| CGTAAACTTTCTACCTTTCC+AGG | 0.283273 | 3_1:-60134211 | None:intergenic |
| TAAGAGTGTGGGTTCGATTT+GGG | 0.294147 | 3_1:-60130862 | None:intergenic |
| GTGATCTAACTTATTCAAAA+TGG | 0.303518 | 3_1:-60134579 | None:intergenic |
| CCCACAATTTCCCTAAATCT+AGG | 0.310590 | 3_1:+60130888 | Msa0365850:CDS |
| CCTTACTGGACATAGGTAAT+TGG | 0.315959 | 3_1:-60133598 | None:intergenic |
| CTTTGAAGATGGACTGAAAT+TGG | 0.319783 | 3_1:+60133316 | Msa0365850:CDS |
| TGCAATATTGTAGTTTGTAT+TGG | 0.335872 | 3_1:-60134417 | None:intergenic |
| AGCTTCAGGCACTTCCTGAT+TGG | 0.338484 | 3_1:-60133559 | None:intergenic |
| GCTGTCTCTGGAGGCATAAA+AGG | 0.342232 | 3_1:+60133728 | Msa0365850:CDS |
| TGGACTCTTCAGGTTATTGC+TGG | 0.342247 | 3_1:+60134309 | Msa0365850:intron |
| ATCTGAACCTTCTCAGCTTC+AGG | 0.348175 | 3_1:-60133573 | None:intergenic |
| AATATCTTCTTTATTGTGTC+AGG | 0.351899 | 3_1:-60134022 | None:intergenic |
| TGGAAATGACTGGTATTCTT+GGG | 0.360068 | 3_1:-60133973 | None:intergenic |
| CTCATGGTGGCAGGTGCGCC+TGG | 0.360470 | 3_1:+60133865 | Msa0365850:intron |
| TGCTGCTGTTGAGCTACTTC+GGG | 0.360693 | 3_1:+60132674 | Msa0365850:CDS |
| TCGGAGCTTAAGAAGTTTGC+AGG | 0.361029 | 3_1:+60134373 | Msa0365850:exon |
| TTCTTGATGTATGCATTAAT+GGG | 0.361976 | 3_1:+60131278 | Msa0365850:CDS |
| TTGGAAATGACTGGTATTCT+TGG | 0.363800 | 3_1:-60133974 | None:intergenic |
| GCTGAAGAAAAGCTATGAAT+TGG | 0.370795 | 3_1:+60134186 | Msa0365850:CDS |
| GTTCGATTTGGGAAGAAGAT+AGG | 0.378013 | 3_1:-60130851 | None:intergenic |
| TTAAGAGTGTGGGTTCGATT+TGG | 0.379313 | 3_1:-60130863 | None:intergenic |
| ACTGTTGTTTCCCATTGAAC+AGG | 0.383548 | 3_1:-60134142 | None:intergenic |
| CCCTAGATTTAGGGAAATTG+TGG | 0.390240 | 3_1:-60130889 | None:intergenic |
| TGGCGAAAACCCTAGATTTA+GGG | 0.391319 | 3_1:-60130898 | None:intergenic |
| TTATTCAAAATGGAACCTAT+TGG | 0.401232 | 3_1:-60134569 | None:intergenic |
| CAGGTTCCATAAAACTAGTA+TGG | 0.401234 | 3_1:-60133904 | None:intergenic |
| AATCAGATACAGAAGCTTCA+TGG | 0.401787 | 3_1:-60130949 | None:intergenic |
| TGCTGGAATTGTCAAAAGAA+TGG | 0.402849 | 3_1:+60134326 | Msa0365850:CDS |
| ATACTGCTCTGGCGTTTGCT+GGG | 0.405436 | 3_1:+60132763 | Msa0365850:CDS |
| TGCGTTTCTCTTCCCTGGTC+AGG | 0.406940 | 3_1:+60130985 | Msa0365850:CDS |
| TGACACAATAAAGAAGATAT+TGG | 0.409601 | 3_1:+60134024 | Msa0365850:CDS |
| GAAATGTTGCATTCAAATGT+TGG | 0.410318 | 3_1:-60130744 | None:intergenic |
| AAAGAAGATATTGGCACAAC+AGG | 0.412880 | 3_1:+60134033 | Msa0365850:CDS |
| GTTTCATGTGGTTTGAGCTT+AGG | 0.423256 | 3_1:+60132735 | Msa0365850:CDS |
| TTGCTGCTGTTGAGCTACTT+CGG | 0.426896 | 3_1:+60132673 | Msa0365850:CDS |
| CAGCAAGACTTGTGACATAC+AGG | 0.430360 | 3_1:-60132656 | None:intergenic |
| GTTGTGTGATGCAGCCAATC+AGG | 0.434474 | 3_1:+60133545 | Msa0365850:CDS |
| TTCGATTTGGGAAGAAGATA+GGG | 0.435124 | 3_1:-60130850 | None:intergenic |
| TCCAATGCGTTTCTCTTCCC+TGG | 0.436188 | 3_1:+60130980 | Msa0365850:CDS |
| GACTGAAATTGGTGAAACTA+AGG | 0.439212 | 3_1:+60133327 | Msa0365850:CDS |
| AGGTTACTTACCCTGTTCAA+TGG | 0.439364 | 3_1:+60134131 | Msa0365850:intron |
| TGGCTGCATCACACAACTGC+TGG | 0.441780 | 3_1:-60133539 | None:intergenic |
| AGCCTTGAAAGACTTCGCTT+TGG | 0.442255 | 3_1:-60133768 | None:intergenic |
| CGGAAAATATATACCTGACC+AGG | 0.446770 | 3_1:-60130998 | None:intergenic |
| CCACAATTTCCCTAAATCTA+GGG | 0.450894 | 3_1:+60130889 | Msa0365850:CDS |
| TGGGAAGAAGATAGGGGAAA+AGG | 0.451850 | 3_1:-60130843 | None:intergenic |
| TTCAAAATGGAACCTATTGG+TGG | 0.458831 | 3_1:-60134566 | None:intergenic |
| GGAACCTGCAGTGTCAAGAT+TGG | 0.459211 | 3_1:+60133919 | Msa0365850:CDS |
| TAAATACCCCAAAATCTCAT+TGG | 0.463483 | 3_1:-60131165 | None:intergenic |
| TGTTGGTTGAAAATTTGAAA+TGG | 0.463497 | 3_1:+60134706 | Msa0365850:three_prime_UTR |
| GGTTACTTACCCTGTTCAAT+GGG | 0.466160 | 3_1:+60134132 | Msa0365850:intron |
| TAGGGAAACTATGCTGTCTC+TGG | 0.470485 | 3_1:+60133716 | Msa0365850:intron |
| GCTTCCAATCTTGACACTGC+AGG | 0.476548 | 3_1:-60133923 | None:intergenic |
| CCTAGATTTAGGGAAATTGT+GGG | 0.484174 | 3_1:-60130888 | None:intergenic |
| AGTGAGAGAAGAAGACATTG+TGG | 0.501773 | 3_1:-60130813 | None:intergenic |
| GAAGAAGATAGGGGAAAAGG+AGG | 0.505154 | 3_1:-60130840 | None:intergenic |
| CTGAAGAAAAGCTATGAATT+GGG | 0.506499 | 3_1:+60134187 | Msa0365850:CDS |
| AGCCAAAGCGAAGTCTTTCA+AGG | 0.506804 | 3_1:+60133766 | Msa0365850:CDS |
| GGAAAGCGCCTGCAACAGCC+AGG | 0.507270 | 3_1:-60133883 | None:intergenic |
| CTATGAATTGGGACCTGGAA+AGG | 0.507524 | 3_1:+60134198 | Msa0365850:CDS |
| GGTGCACAAGCTGTTGGAAT+GGG | 0.510482 | 3_1:+60131095 | Msa0365850:CDS |
| CGATTTGTAAGCTTTGAAGA+TGG | 0.513263 | 3_1:+60133305 | Msa0365850:intron |
| CTTAGGAGAGTATACTGCTC+TGG | 0.517475 | 3_1:+60132752 | Msa0365850:CDS |
| GAATTCAACAGTTATCAGTC+AGG | 0.518626 | 3_1:+60131315 | Msa0365850:CDS |
| ACTAAGGGGTGAAGCCATGC+AGG | 0.520103 | 3_1:+60133343 | Msa0365850:CDS |
| GCATTTACGTTGGAAATGAC+TGG | 0.530559 | 3_1:-60133983 | None:intergenic |
| TCTTGGGGTTCTAATGTCTG+TGG | 0.536650 | 3_1:-60133957 | None:intergenic |
| TGAGCTACTTCGGGCACGTG+AGG | 0.538884 | 3_1:+60132683 | Msa0365850:CDS |
| GGAAGTGCCTGAAGCTGAGA+AGG | 0.545626 | 3_1:+60133566 | Msa0365850:CDS |
| AAGAAGATAGGGGAAAAGGA+GGG | 0.546836 | 3_1:-60130839 | None:intergenic |
| TCGATTTGGGAAGAAGATAG+GGG | 0.547419 | 3_1:-60130849 | None:intergenic |
| GGAAATGACTGGTATTCTTG+GGG | 0.548400 | 3_1:-60133972 | None:intergenic |
| TACTGCTCTGGCGTTTGCTG+GGG | 0.549969 | 3_1:+60132764 | Msa0365850:CDS |
| TTGAAAATTTGAAATGGCAA+TGG | 0.553034 | 3_1:+60134712 | Msa0365850:three_prime_UTR |
| AAAAGCTATGAATTGGGACC+TGG | 0.554297 | 3_1:+60134193 | Msa0365850:CDS |
| CATGGTTAGTGTGGTAGGAC+TGG | 0.554574 | 3_1:+60133503 | Msa0365850:CDS |
| GGTGCCATGGTTAGTGTGGT+AGG | 0.555350 | 3_1:+60133498 | Msa0365850:CDS |
| ACCAGGGAAGAGAAACGCAT+TGG | 0.557047 | 3_1:-60130981 | None:intergenic |
| CATAAAAGGAATAGAAGTGG+TGG | 0.563259 | 3_1:+60133742 | Msa0365850:CDS |
| GTGAAGACTCTTCTATCCAA+GGG | 0.563734 | 3_1:+60134163 | Msa0365850:CDS |
| TTGTACAAAACTGCAGCAGA+AGG | 0.572446 | 3_1:-60131137 | None:intergenic |
| CTGTTGTTTCCCATTGAACA+GGG | 0.572523 | 3_1:-60134141 | None:intergenic |
| GAGCTACTTCGGGCACGTGA+GGG | 0.576524 | 3_1:+60132684 | Msa0365850:CDS |
| GATTCTGTTGATGTTTCATG+TGG | 0.577223 | 3_1:+60132723 | Msa0365850:CDS |
| CTACTTCGGGCACGTGAGGG+AGG | 0.580356 | 3_1:+60132687 | Msa0365850:CDS |
| GCAGGAAATTGCTATGTGTG+TGG | 0.583342 | 3_1:+60134391 | Msa0365850:three_prime_UTR |
| AGTGAAGACTCTTCTATCCA+AGG | 0.584582 | 3_1:+60134162 | Msa0365850:CDS |
| ATTGTGTCAGGATCTGTATG+TGG | 0.585678 | 3_1:-60134010 | None:intergenic |
| GGGTGCACAAGCTGTTGGAA+TGG | 0.590984 | 3_1:+60131094 | Msa0365850:intron |
| TTGAGATCCAGTGGAGATGG+TGG | 0.593982 | 3_1:-60130918 | None:intergenic |
| GAAGTCTTTCAAGGCTCGAA+TGG | 0.594481 | 3_1:+60133775 | Msa0365850:CDS |
| TCAAGAACCTTACTGGACAT+AGG | 0.602304 | 3_1:-60133605 | None:intergenic |
| TAAAGGTGCCATGGTTAGTG+TGG | 0.602685 | 3_1:+60133494 | Msa0365850:CDS |
| AGATACAGAAGCTTCATGGA+TGG | 0.603397 | 3_1:-60130945 | None:intergenic |
| TTGTAGGGTGCACAAGCTGT+TGG | 0.608275 | 3_1:+60131089 | Msa0365850:intron |
| GATGGAAGATTGAGATCCAG+TGG | 0.616510 | 3_1:-60130927 | None:intergenic |
| GATGCTGCTGATGCTACTAA+AGG | 0.624615 | 3_1:+60133477 | Msa0365850:CDS |
| AGACTTGTGACATACAGGGC+AGG | 0.626537 | 3_1:-60132651 | None:intergenic |
| GGAAACTATGCTGTCTCTGG+AGG | 0.631276 | 3_1:+60133719 | Msa0365850:CDS |
| AGATTGAGATCCAGTGGAGA+TGG | 0.632101 | 3_1:-60130921 | None:intergenic |
| GGTAGGACTGGACTCAGAGA+AGG | 0.637373 | 3_1:+60133515 | Msa0365850:CDS |
| TGATGCTACTAAAGGTGCCA+TGG | 0.641755 | 3_1:+60133485 | Msa0365850:CDS |
| AGCAAGACTTGTGACATACA+GGG | 0.652472 | 3_1:-60132655 | None:intergenic |
| ACTACCACAGATTACCTGCA+TGG | 0.656968 | 3_1:-60133357 | None:intergenic |
| GCTAAATCAAAGAGAAACAC+GGG | 0.660284 | 3_1:+60134469 | Msa0365850:three_prime_UTR |
| CAGTCCTACCACACTAACCA+TGG | 0.663013 | 3_1:-60133502 | None:intergenic |
| TGTATGCATTAATGGGCCGA+AGG | 0.664486 | 3_1:+60131285 | Msa0365850:CDS |
| GGTGCTGATATTGAAAACAT+CGG | 0.665514 | 3_1:+60134354 | Msa0365850:CDS |
| AGCTAAATCAAAGAGAAACA+CGG | 0.666440 | 3_1:+60134468 | Msa0365850:three_prime_UTR |
| CTGAAATTGGTGAAACTAAG+GGG | 0.669315 | 3_1:+60133329 | Msa0365850:CDS |
| GGAAAATATATACCTGACCA+GGG | 0.675861 | 3_1:-60130997 | None:intergenic |
| AGGCATAAAAGGAATAGAAG+TGG | 0.682105 | 3_1:+60133739 | Msa0365850:CDS |
| ATTGTCAAAAGAATGGACAA+AGG | 0.682335 | 3_1:+60134333 | Msa0365850:CDS |
| ACTGAAATTGGTGAAACTAA+GGG | 0.694892 | 3_1:+60133328 | Msa0365850:CDS |
| TGAAGACTCTTCTATCCAAG+GGG | 0.710603 | 3_1:+60134164 | Msa0365850:CDS |
| ATGTGGCAGAGCATTTACGT+TGG | 0.714429 | 3_1:-60133993 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTCATCTAAAATTTAT+TGG | - | chr3_1:60134685-60134704 | None:intergenic | 10.0% |
| !!! | GTTTAAATTACAACTATTTT+TGG | + | chr3_1:60131201-60131220 | Msa0365850:intron | 15.0% |
| !!! | TTGTTTTGTATTATGTATTT+AGG | + | chr3_1:60131248-60131267 | Msa0365850:intron | 15.0% |
| !! | TAAAAAAAAACTTCTACTAT+TGG | + | chr3_1:60131803-60131822 | Msa0365850:intron | 15.0% |
| !! | TTTATAAACAACAAATTTCA+TGG | - | chr3_1:60132583-60132602 | None:intergenic | 15.0% |
| !!! | ATGAAATTTGTTGTTTATAA+AGG | + | chr3_1:60132582-60132601 | Msa0365850:intron | 15.0% |
| !! | AAGAGAAAAATATGTAATTA+TGG | + | chr3_1:60132933-60132952 | Msa0365850:intron | 15.0% |
| !! | TAAAAAAAAAAACAACTCAA+AGG | - | chr3_1:60133233-60133252 | None:intergenic | 15.0% |
| !!! | AAATTGACTGTATTATATTT+TGG | + | chr3_1:60133693-60133712 | Msa0365850:intron | 15.0% |
| !!! | ATTTTAGATGAAATAATTGT+TGG | + | chr3_1:60134689-60134708 | Msa0365850:three_prime_UTR | 15.0% |
| !!! | CAATGAATTTTGATTGAAAT+TGG | + | chr3_1:60131039-60131058 | Msa0365850:intron | 20.0% |
| !!! | ATTTGATTTGATTTGATTGT+AGG | + | chr3_1:60131073-60131092 | Msa0365850:intron | 20.0% |
| !!! | TTTGATTTGATTTGATTGTA+GGG | + | chr3_1:60131074-60131093 | Msa0365850:intron | 20.0% |
| !! | TTTAGTATAAATGACAATCA+AGG | + | chr3_1:60131350-60131369 | Msa0365850:intron | 20.0% |
| !!! | TTTTTTATGATATGACGAAA+CGG | + | chr3_1:60131439-60131458 | Msa0365850:intron | 20.0% |
| !! | AAGTACAAAAATAATGACAT+TGG | - | chr3_1:60131575-60131594 | None:intergenic | 20.0% |
| !!! | TTTTTTGGACAAAAAATACA+TGG | - | chr3_1:60132828-60132847 | None:intergenic | 20.0% |
| !!! | AACATGGTAATCAATTTTTT+TGG | - | chr3_1:60132843-60132862 | None:intergenic | 20.0% |
| !! | ACAAATCGAATTAAATACAT+GGG | - | chr3_1:60133293-60133312 | None:intergenic | 20.0% |
| !! | TACAAATCGAATTAAATACA+TGG | - | chr3_1:60133294-60133313 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTAACTTCAAAAC+TGG | - | chr3_1:60134542-60134561 | None:intergenic | 20.0% |
| ! | CATTCAAATGTTGGATTTAT+GGG | - | chr3_1:60130738-60130757 | None:intergenic | 25.0% |
| !!! | ATTTTGATTGAAATTGGAAC+TGG | + | chr3_1:60131045-60131064 | Msa0365850:intron | 25.0% |
| !!! | TTTTGATTGAAATTGGAACT+GGG | + | chr3_1:60131046-60131065 | Msa0365850:intron | 25.0% |
| ! | TTCTTGATGTATGCATTAAT+GGG | + | chr3_1:60131278-60131297 | Msa0365850:CDS | 25.0% |
| !!! | CAATCAAGGTTATTTTATTG+AGG | + | chr3_1:60131364-60131383 | Msa0365850:intron | 25.0% |
| ! | ACAAAAATAATGACATTGGA+TGG | - | chr3_1:60131571-60131590 | None:intergenic | 25.0% |
| ! | ATCTCAAATATTCCTAAACT+GGG | - | chr3_1:60131600-60131619 | None:intergenic | 25.0% |
| ! | TTTAATGTAACAGAAGTCTA+AGG | - | chr3_1:60131917-60131936 | None:intergenic | 25.0% |
| !!! | AATATGAGTTGGTTTGTAAT+CGG | + | chr3_1:60132078-60132097 | Msa0365850:intron | 25.0% |
| ! | ACAATTAGAAATTGAATCAC+TGG | + | chr3_1:60132128-60132147 | Msa0365850:intron | 25.0% |
| ! | TTGTTATAATAGTTCCAGTT+GGG | - | chr3_1:60132225-60132244 | None:intergenic | 25.0% |
| ! | GTTAACATTATCAACGAAAT+AGG | + | chr3_1:60132364-60132383 | Msa0365850:intron | 25.0% |
| !!! | CTTTAAAATCATGATTACAG+AGG | - | chr3_1:60132455-60132474 | None:intergenic | 25.0% |
| !! | CTCTGTAATCATGATTTTAA+AGG | + | chr3_1:60132453-60132472 | Msa0365850:intron | 25.0% |
| ! | GGAATAAAATGAGAATAAAG+AGG | + | chr3_1:60132474-60132493 | Msa0365850:intron | 25.0% |
| ! | AAATTACATATATGCCTCTA+TGG | - | chr3_1:60132608-60132627 | None:intergenic | 25.0% |
| ! | GTTGGGAAAAATATGAAAAA+CGG | - | chr3_1:60132894-60132913 | None:intergenic | 25.0% |
| ! | CAAATATTTCTTGAAACGTT+GGG | - | chr3_1:60132911-60132930 | None:intergenic | 25.0% |
| ! | TCAAATATTTCTTGAAACGT+TGG | - | chr3_1:60132912-60132931 | None:intergenic | 25.0% |
| ! | AAACTTTAAATGACTCATAC+TGG | - | chr3_1:60133035-60133054 | None:intergenic | 25.0% |
| ! | AGTCATTACAATCTAGTAAA+TGG | + | chr3_1:60133073-60133092 | Msa0365850:intron | 25.0% |
| ! | TGTAAATCAAGACAAAAAAG+TGG | - | chr3_1:60133261-60133280 | None:intergenic | 25.0% |
| !!! | TGACTGTATTATATTTTGGT+AGG | + | chr3_1:60133697-60133716 | Msa0365850:intron | 25.0% |
| !!! | GACTGTATTATATTTTGGTA+GGG | + | chr3_1:60133698-60133717 | Msa0365850:intron | 25.0% |
| ! | AATATCTTCTTTATTGTGTC+AGG | - | chr3_1:60134025-60134044 | None:intergenic | 25.0% |
| ! | TGACACAATAAAGAAGATAT+TGG | + | chr3_1:60134024-60134043 | Msa0365850:CDS | 25.0% |
| ! | TAGCAGAATTATAAAACTAG+AGG | - | chr3_1:60134275-60134294 | None:intergenic | 25.0% |
| !! | TGCAATATTGTAGTTTGTAT+TGG | - | chr3_1:60134420-60134439 | None:intergenic | 25.0% |
| ! | AAAAAACTTAATCCACCAAT+AGG | + | chr3_1:60134554-60134573 | Msa0365850:three_prime_UTR | 25.0% |
| ! | TTATTCAAAATGGAACCTAT+TGG | - | chr3_1:60134572-60134591 | None:intergenic | 25.0% |
| ! | GTGATCTAACTTATTCAAAA+TGG | - | chr3_1:60134582-60134601 | None:intergenic | 25.0% |
| !! | TGTTGGTTGAAAATTTGAAA+TGG | + | chr3_1:60134706-60134725 | Msa0365850:three_prime_UTR | 25.0% |
| !! | TTGAAAATTTGAAATGGCAA+TGG | + | chr3_1:60134712-60134731 | Msa0365850:three_prime_UTR | 25.0% |
| !!! | GTTTTGAAGACAAAAACACT+TGG | + | chr3_1:60130686-60130705 | Msa0365850:five_prime_UTR | 30.0% |
| GCATTCAAATGTTGGATTTA+TGG | - | chr3_1:60130739-60130758 | None:intergenic | 30.0% | |
| GAAATGTTGCATTCAAATGT+TGG | - | chr3_1:60130747-60130766 | None:intergenic | 30.0% | |
| ! | TAGAAAAAGAAGAAGGGTTT+TGG | - | chr3_1:60130790-60130809 | None:intergenic | 30.0% |
| TGGAGATAGAAAAAGAAGAA+GGG | - | chr3_1:60130796-60130815 | None:intergenic | 30.0% | |
| ! | AAGAAAGCCAATGAGATTTT+GGG | + | chr3_1:60131158-60131177 | Msa0365850:CDS | 30.0% |
| TAAATACCCCAAAATCTCAT+TGG | - | chr3_1:60131168-60131187 | None:intergenic | 30.0% | |
| CTTCTTGATGTATGCATTAA+TGG | + | chr3_1:60131277-60131296 | Msa0365850:CDS | 30.0% | |
| !! | TCAAGGTTATTTTATTGAGG+TGG | + | chr3_1:60131367-60131386 | Msa0365850:intron | 30.0% |
| !! | GTTATTTTATTGAGGTGGAA+GGG | + | chr3_1:60131372-60131391 | Msa0365850:intron | 30.0% |
| ! | TTAGTGTTATCGATTGTGAA+TGG | + | chr3_1:60131493-60131512 | Msa0365850:intron | 30.0% |
| TCTCAAATATTCCTAAACTG+GGG | - | chr3_1:60131599-60131618 | None:intergenic | 30.0% | |
| CATCTCAAATATTCCTAAAC+TGG | - | chr3_1:60131601-60131620 | None:intergenic | 30.0% | |
| CAGTTTAGGAATATTTGAGA+TGG | + | chr3_1:60131599-60131618 | Msa0365850:intron | 30.0% | |
| TCCATTTACAAACAACAGAA+AGG | + | chr3_1:60131660-60131679 | Msa0365850:intron | 30.0% | |
| ! | TCCTTTCTGTTGTTTGTAAA+TGG | - | chr3_1:60131664-60131683 | None:intergenic | 30.0% |
| ATCATCTATACTTGATCAAC+AGG | - | chr3_1:60132025-60132044 | None:intergenic | 30.0% | |
| CAACTCATATTACACTGTTA+TGG | - | chr3_1:60132069-60132088 | None:intergenic | 30.0% | |
| CATAACAGTGTAATATGAGT+TGG | + | chr3_1:60132067-60132086 | Msa0365850:intron | 30.0% | |
| GTTGTTATAATAGTTCCAGT+TGG | - | chr3_1:60132226-60132245 | None:intergenic | 30.0% | |
| ! | CCAAGCCTTTTAATATTAGA+CGG | + | chr3_1:60132251-60132270 | Msa0365850:intron | 30.0% |
| ! | CAAGCCTTTTAATATTAGAC+GGG | + | chr3_1:60132252-60132271 | Msa0365850:intron | 30.0% |
| ! | AAGCCTTTTAATATTAGACG+GGG | + | chr3_1:60132253-60132272 | Msa0365850:intron | 30.0% |
| AGATAAATGCTCTCTTATCA+GGG | - | chr3_1:60132310-60132329 | None:intergenic | 30.0% | |
| TAAAATCATGATTACAGAGG+AGG | - | chr3_1:60132452-60132471 | None:intergenic | 30.0% | |
| TATGCATTCTAGTGTAGAAA+AGG | - | chr3_1:60132528-60132547 | None:intergenic | 30.0% | |
| ATATGTAATTATGGCGTATG+TGG | + | chr3_1:60132942-60132961 | Msa0365850:intron | 30.0% | |
| AATTCTACTGTCATGGTAAA+AGG | - | chr3_1:60132968-60132987 | None:intergenic | 30.0% | |
| TTTACCATGACAGTAGAATT+AGG | + | chr3_1:60132968-60132987 | Msa0365850:intron | 30.0% | |
| ! | TTTTCCTAATTCTACTGTCA+TGG | - | chr3_1:60132975-60132994 | None:intergenic | 30.0% |
| ATACCATCTATGAGAAGTTT+AGG | + | chr3_1:60133112-60133131 | Msa0365850:intron | 30.0% | |
| ACTGAAATTGGTGAAACTAA+GGG | + | chr3_1:60133328-60133347 | Msa0365850:CDS | 30.0% | |
| ! | TAGAAACAGAATTTTGCCTA+AGG | - | chr3_1:60133649-60133668 | None:intergenic | 30.0% |
| AATTGCACTTCTAATGCAAT+TGG | + | chr3_1:60134107-60134126 | Msa0365850:intron | 30.0% | |
| CTGAAGAAAAGCTATGAATT+GGG | + | chr3_1:60134187-60134206 | Msa0365850:CDS | 30.0% | |
| !!! | CTGCTAACTTTTATTTTCTC+TGG | + | chr3_1:60134289-60134308 | Msa0365850:intron | 30.0% |
| ATTGTCAAAAGAATGGACAA+AGG | + | chr3_1:60134333-60134352 | Msa0365850:CDS | 30.0% | |
| AGCTAAATCAAAGAGAAACA+CGG | + | chr3_1:60134468-60134487 | Msa0365850:three_prime_UTR | 30.0% | |
| GTGGAGATAGAAAAAGAAGA+AGG | - | chr3_1:60130797-60130816 | None:intergenic | 35.0% | |
| !! | TTCGATTTGGGAAGAAGATA+GGG | - | chr3_1:60130853-60130872 | None:intergenic | 35.0% |
| !!! | ATTGTGGGTTTTAAGAGTGT+GGG | - | chr3_1:60130876-60130895 | None:intergenic | 35.0% |
| !!! | AATTGTGGGTTTTAAGAGTG+TGG | - | chr3_1:60130877-60130896 | None:intergenic | 35.0% |
| CCTAGATTTAGGGAAATTGT+GGG | - | chr3_1:60130891-60130910 | None:intergenic | 35.0% | |
| CCACAATTTCCCTAAATCTA+GGG | + | chr3_1:60130889-60130908 | Msa0365850:CDS | 35.0% | |
| AATCAGATACAGAAGCTTCA+TGG | - | chr3_1:60130952-60130971 | None:intergenic | 35.0% | |
| GGAAAATATATACCTGACCA+GGG | - | chr3_1:60131000-60131019 | None:intergenic | 35.0% | |
| TGTTTATTCGCAATGCAATG+CGG | - | chr3_1:60131021-60131040 | None:intergenic | 35.0% | |
| ! | CAAGAAAGCCAATGAGATTT+TGG | + | chr3_1:60131157-60131176 | Msa0365850:CDS | 35.0% |
| ! | AGAAAGCCAATGAGATTTTG+GGG | + | chr3_1:60131159-60131178 | Msa0365850:CDS | 35.0% |
| ! | GTTGAATTCAGCTTTTCCTT+CGG | - | chr3_1:60131304-60131323 | None:intergenic | 35.0% |
| GAATTCAACAGTTATCAGTC+AGG | + | chr3_1:60131315-60131334 | Msa0365850:CDS | 35.0% | |
| !! | GGTTATTTTATTGAGGTGGA+AGG | + | chr3_1:60131371-60131390 | Msa0365850:intron | 35.0% |
| AGAAAGCAAAGAATCTGCAA+TGG | + | chr3_1:60131517-60131536 | Msa0365850:intron | 35.0% | |
| TAATGACATTGGATGGAATG+TGG | - | chr3_1:60131564-60131583 | None:intergenic | 35.0% | |
| ! | TTTTGTACTTTCCCCAGTTT+AGG | + | chr3_1:60131585-60131604 | Msa0365850:intron | 35.0% |
| CTGCATGATGAAAAAATCAG+TGG | - | chr3_1:60131639-60131658 | None:intergenic | 35.0% | |
| ACTCTCAAGTCTCAAATTTC+TGG | - | chr3_1:60131990-60132009 | None:intergenic | 35.0% | |
| GCTATTATATTTCACCCAAC+TGG | + | chr3_1:60132208-60132227 | Msa0365850:intron | 35.0% | |
| CCGTCTAATATTAAAAGGCT+TGG | - | chr3_1:60132254-60132273 | None:intergenic | 35.0% | |
| GAGATAAATGCTCTCTTATC+AGG | - | chr3_1:60132311-60132330 | None:intergenic | 35.0% | |
| GTTGTTTATAAAGGCCATAG+AGG | + | chr3_1:60132591-60132610 | Msa0365850:intron | 35.0% | |
| GATTCTGTTGATGTTTCATG+TGG | + | chr3_1:60132723-60132742 | Msa0365850:CDS | 35.0% | |
| GAGAAGCAGTAGAAAAAACA+TGG | - | chr3_1:60132859-60132878 | None:intergenic | 35.0% | |
| GGGAAAAATATGAAAAACGG+AGG | - | chr3_1:60132891-60132910 | None:intergenic | 35.0% | |
| GTAGAATTAGGAAAACCAAG+TGG | + | chr3_1:60132980-60132999 | Msa0365850:intron | 35.0% | |
| TATGTTAAGTGACCCAACTA+CGG | + | chr3_1:60133004-60133023 | Msa0365850:intron | 35.0% | |
| TTTATGTGCAAAACCACACA+GGG | - | chr3_1:60133193-60133212 | None:intergenic | 35.0% | |
| ATTTATGTGCAAAACCACAC+AGG | - | chr3_1:60133194-60133213 | None:intergenic | 35.0% | |
| !! | GTGTGGTTTTGCACATAAAT+TGG | + | chr3_1:60133194-60133213 | Msa0365850:intron | 35.0% |
| !! | CGATTTGTAAGCTTTGAAGA+TGG | + | chr3_1:60133305-60133324 | Msa0365850:intron | 35.0% |
| !! | CTTTGAAGATGGACTGAAAT+TGG | + | chr3_1:60133316-60133335 | Msa0365850:CDS | 35.0% |
| GACTGAAATTGGTGAAACTA+AGG | + | chr3_1:60133327-60133346 | Msa0365850:CDS | 35.0% | |
| CTGAAATTGGTGAAACTAAG+GGG | + | chr3_1:60133329-60133348 | Msa0365850:CDS | 35.0% | |
| GTAACCATTGTTCTTTATCC+AGG | + | chr3_1:60133455-60133474 | Msa0365850:intron | 35.0% | |
| !!! | ATCTGGCTTTTAACAACCTT+AGG | + | chr3_1:60133630-60133649 | Msa0365850:intron | 35.0% |
| AGGCATAAAAGGAATAGAAG+TGG | + | chr3_1:60133739-60133758 | Msa0365850:CDS | 35.0% | |
| CATAAAAGGAATAGAAGTGG+TGG | + | chr3_1:60133742-60133761 | Msa0365850:CDS | 35.0% | |
| CATTATTACTTTGCGAAAGG+TGG | - | chr3_1:60133838-60133857 | None:intergenic | 35.0% | |
| AGGCATTATTACTTTGCGAA+AGG | - | chr3_1:60133841-60133860 | None:intergenic | 35.0% | |
| ! | GTAATAATGCCTTTTCCTCA+TGG | + | chr3_1:60133849-60133868 | Msa0365850:intron | 35.0% |
| !!! | CGCTTTCCATACTAGTTTTA+TGG | + | chr3_1:60133898-60133917 | Msa0365850:CDS | 35.0% |
| CAGGTTCCATAAAACTAGTA+TGG | - | chr3_1:60133907-60133926 | None:intergenic | 35.0% | |
| TGGAAATGACTGGTATTCTT+GGG | - | chr3_1:60133976-60133995 | None:intergenic | 35.0% | |
| TTGGAAATGACTGGTATTCT+TGG | - | chr3_1:60133977-60133996 | None:intergenic | 35.0% | |
| AAAGAAGATATTGGCACAAC+AGG | + | chr3_1:60134033-60134052 | Msa0365850:CDS | 35.0% | |
| TCCAACACAAAAGACATAAG+TGG | + | chr3_1:60134079-60134098 | Msa0365850:intron | 35.0% | |
| ! | ACCACTTATGTCTTTTGTGT+TGG | - | chr3_1:60134083-60134102 | None:intergenic | 35.0% |
| GCTGAAGAAAAGCTATGAAT+TGG | + | chr3_1:60134186-60134205 | Msa0365850:CDS | 35.0% | |
| TTCAAGAACACGGATAGTAT+AGG | - | chr3_1:60134240-60134259 | None:intergenic | 35.0% | |
| TCCATTGAGATTCAAGAACA+CGG | - | chr3_1:60134250-60134269 | None:intergenic | 35.0% | |
| ! | TTATTTTCTCTGGACTCTTC+AGG | + | chr3_1:60134299-60134318 | Msa0365850:intron | 35.0% |
| TGCTGGAATTGTCAAAAGAA+TGG | + | chr3_1:60134326-60134345 | Msa0365850:CDS | 35.0% | |
| !! | GGTGCTGATATTGAAAACAT+CGG | + | chr3_1:60134354-60134373 | Msa0365850:CDS | 35.0% |
| ! | CACACATTTTCTCGTGAAAA+AGG | - | chr3_1:60134446-60134465 | None:intergenic | 35.0% |
| GCTAAATCAAAGAGAAACAC+GGG | + | chr3_1:60134469-60134488 | Msa0365850:three_prime_UTR | 35.0% | |
| TTCAAAATGGAACCTATTGG+TGG | - | chr3_1:60134569-60134588 | None:intergenic | 35.0% | |
| !!! | TTTTGTTACAGTGATGACGG+AGG | - | chr3_1:60130715-60130734 | None:intergenic | 40.0% |
| !!! | GGGTTTTGTTACAGTGATGA+CGG | - | chr3_1:60130718-60130737 | None:intergenic | 40.0% |
| AGTGAGAGAAGAAGACATTG+TGG | - | chr3_1:60130816-60130835 | None:intergenic | 40.0% | |
| AAGAAGATAGGGGAAAAGGA+GGG | - | chr3_1:60130842-60130861 | None:intergenic | 40.0% | |
| !! | TCGATTTGGGAAGAAGATAG+GGG | - | chr3_1:60130852-60130871 | None:intergenic | 40.0% |
| !! | GTTCGATTTGGGAAGAAGAT+AGG | - | chr3_1:60130854-60130873 | None:intergenic | 40.0% |
| ! | TAAGAGTGTGGGTTCGATTT+GGG | - | chr3_1:60130865-60130884 | None:intergenic | 40.0% |
| ! | TTAAGAGTGTGGGTTCGATT+TGG | - | chr3_1:60130866-60130885 | None:intergenic | 40.0% |
| CCCACAATTTCCCTAAATCT+AGG | + | chr3_1:60130888-60130907 | Msa0365850:CDS | 40.0% | |
| CCCTAGATTTAGGGAAATTG+TGG | - | chr3_1:60130892-60130911 | None:intergenic | 40.0% | |
| TGGCGAAAACCCTAGATTTA+GGG | - | chr3_1:60130901-60130920 | None:intergenic | 40.0% | |
| AGATACAGAAGCTTCATGGA+TGG | - | chr3_1:60130948-60130967 | None:intergenic | 40.0% | |
| CGGAAAATATATACCTGACC+AGG | - | chr3_1:60131001-60131020 | None:intergenic | 40.0% | |
| TTGTACAAAACTGCAGCAGA+AGG | - | chr3_1:60131140-60131159 | None:intergenic | 40.0% | |
| ! | ATTTTATTGAGGTGGAAGGG+TGG | + | chr3_1:60131375-60131394 | Msa0365850:intron | 40.0% |
| AAGGGTGGAGTGAAATTTAG+TGG | + | chr3_1:60131390-60131409 | Msa0365850:intron | 40.0% | |
| ATAGCATATCCTCAGTGTGT+TGG | + | chr3_1:60131713-60131732 | Msa0365850:intron | 40.0% | |
| ATCATTCATCCAACACACTG+AGG | - | chr3_1:60131725-60131744 | None:intergenic | 40.0% | |
| GAATCACTGGAAATCACTTC+TGG | + | chr3_1:60132141-60132160 | Msa0365850:intron | 40.0% | |
| CAGCCCCGTCTAATATTAAA+AGG | - | chr3_1:60132259-60132278 | None:intergenic | 40.0% | |
| ! | CTTTTAATATTAGACGGGGC+TGG | + | chr3_1:60132257-60132276 | Msa0365850:intron | 40.0% |
| ATGATTACAGAGGAGGTCTA+AGG | - | chr3_1:60132445-60132464 | None:intergenic | 40.0% | |
| AGCAAGACTTGTGACATACA+GGG | - | chr3_1:60132658-60132677 | None:intergenic | 40.0% | |
| GTTTCATGTGGTTTGAGCTT+AGG | + | chr3_1:60132735-60132754 | Msa0365850:CDS | 40.0% | |
| TGAAAAACGGAGGCAATGAA+AGG | - | chr3_1:60132881-60132900 | None:intergenic | 40.0% | |
| GGTCACTTAACATATCCACT+TGG | - | chr3_1:60132998-60133017 | None:intergenic | 40.0% | |
| ATGTTAAGTGACCCAACTAC+GGG | + | chr3_1:60133005-60133024 | Msa0365850:intron | 40.0% | |
| AGGCCTAAACTTCTCATAGA+TGG | - | chr3_1:60133118-60133137 | None:intergenic | 40.0% | |
| CTGACAAGCTGAAAACAAAC+AGG | - | chr3_1:60133138-60133157 | None:intergenic | 40.0% | |
| GCATCCTGGATAAAGAACAA+TGG | - | chr3_1:60133462-60133481 | None:intergenic | 40.0% | |
| CCTTACTGGACATAGGTAAT+TGG | - | chr3_1:60133601-60133620 | None:intergenic | 40.0% | |
| CCAATTACCTATGTCCAGTA+AGG | + | chr3_1:60133598-60133617 | Msa0365850:intron | 40.0% | |
| TCAAGAACCTTACTGGACAT+AGG | - | chr3_1:60133608-60133627 | None:intergenic | 40.0% | |
| TATGTCCAGTAAGGTTCTTG+AGG | + | chr3_1:60133607-60133626 | Msa0365850:intron | 40.0% | |
| ! | ATAATGCCTTTTCCTCATGG+TGG | + | chr3_1:60133852-60133871 | Msa0365850:intron | 40.0% |
| GGAAATGACTGGTATTCTTG+GGG | - | chr3_1:60133975-60133994 | None:intergenic | 40.0% | |
| GCATTTACGTTGGAAATGAC+TGG | - | chr3_1:60133986-60134005 | None:intergenic | 40.0% | |
| ATTGTGTCAGGATCTGTATG+TGG | - | chr3_1:60134013-60134032 | None:intergenic | 40.0% | |
| AGGTTACTTACCCTGTTCAA+TGG | + | chr3_1:60134131-60134150 | Msa0365850:intron | 40.0% | |
| GGTTACTTACCCTGTTCAAT+GGG | + | chr3_1:60134132-60134151 | Msa0365850:intron | 40.0% | |
| !! | CTGTTGTTTCCCATTGAACA+GGG | - | chr3_1:60134144-60134163 | None:intergenic | 40.0% |
| !! | ACTGTTGTTTCCCATTGAAC+AGG | - | chr3_1:60134145-60134164 | None:intergenic | 40.0% |
| AGTGAAGACTCTTCTATCCA+AGG | + | chr3_1:60134162-60134181 | Msa0365850:CDS | 40.0% | |
| GTGAAGACTCTTCTATCCAA+GGG | + | chr3_1:60134163-60134182 | Msa0365850:CDS | 40.0% | |
| TGAAGACTCTTCTATCCAAG+GGG | + | chr3_1:60134164-60134183 | Msa0365850:CDS | 40.0% | |
| AAAAGCTATGAATTGGGACC+TGG | + | chr3_1:60134193-60134212 | Msa0365850:CDS | 40.0% | |
| CGTAAACTTTCTACCTTTCC+AGG | - | chr3_1:60134214-60134233 | None:intergenic | 40.0% | |
| TCCGTGTTCTTGAATCTCAA+TGG | + | chr3_1:60134246-60134265 | Msa0365850:intron | 40.0% | |
| !!! | GGTTTTGGAGAATGCGAGAA+TGG | - | chr3_1:60130775-60130794 | None:intergenic | 45.0% |
| GAAGAAGATAGGGGAAAAGG+AGG | - | chr3_1:60130843-60130862 | None:intergenic | 45.0% | |
| TGGGAAGAAGATAGGGGAAA+AGG | - | chr3_1:60130846-60130865 | None:intergenic | 45.0% | |
| GTGGCGAAAACCCTAGATTT+AGG | - | chr3_1:60130902-60130921 | None:intergenic | 45.0% | |
| AGATTGAGATCCAGTGGAGA+TGG | - | chr3_1:60130924-60130943 | None:intergenic | 45.0% | |
| GATGGAAGATTGAGATCCAG+TGG | - | chr3_1:60130930-60130949 | None:intergenic | 45.0% | |
| ! | TGTATGCATTAATGGGCCGA+AGG | + | chr3_1:60131285-60131304 | Msa0365850:CDS | 45.0% |
| TGACGAAACGGCATGAAGTT+AGG | + | chr3_1:60131451-60131470 | Msa0365850:intron | 45.0% | |
| ATTGGATGGAATGTGGTGCA+GGG | - | chr3_1:60131557-60131576 | None:intergenic | 45.0% | |
| TCACTGGAAATCACTTCTGG+TGG | + | chr3_1:60132144-60132163 | Msa0365850:intron | 45.0% | |
| GGCTGAAGCAGAGAATTAGA+TGG | - | chr3_1:60132633-60132652 | None:intergenic | 45.0% | |
| CAGCAAGACTTGTGACATAC+AGG | - | chr3_1:60132659-60132678 | None:intergenic | 45.0% | |
| TTGCTGCTGTTGAGCTACTT+CGG | + | chr3_1:60132673-60132692 | Msa0365850:CDS | 45.0% | |
| ! | CTTAGGAGAGTATACTGCTC+TGG | + | chr3_1:60132752-60132771 | Msa0365850:CDS | 45.0% |
| TGTTAAGTGACCCAACTACG+GGG | + | chr3_1:60133006-60133025 | Msa0365850:intron | 45.0% | |
| ATACTGGAAACCCCGTAGTT+GGG | - | chr3_1:60133019-60133038 | None:intergenic | 45.0% | |
| GCTTGTCAGCTTGTAGCATA+TGG | + | chr3_1:60133149-60133168 | Msa0365850:intron | 45.0% | |
| !! | GAAGAAGTATCTTCCCTGTG+TGG | + | chr3_1:60133177-60133196 | Msa0365850:intron | 45.0% |
| ACTACCACAGATTACCTGCA+TGG | - | chr3_1:60133360-60133379 | None:intergenic | 45.0% | |
| GATGCTGCTGATGCTACTAA+AGG | + | chr3_1:60133477-60133496 | Msa0365850:CDS | 45.0% | |
| !! | TGATGCTACTAAAGGTGCCA+TGG | + | chr3_1:60133485-60133504 | Msa0365850:CDS | 45.0% |
| !! | TAAAGGTGCCATGGTTAGTG+TGG | + | chr3_1:60133494-60133513 | Msa0365850:CDS | 45.0% |
| ATCTGAACCTTCTCAGCTTC+AGG | - | chr3_1:60133576-60133595 | None:intergenic | 45.0% | |
| CAGATCCTCAAGAACCTTAC+TGG | - | chr3_1:60133615-60133634 | None:intergenic | 45.0% | |
| CAGTAAGGTTCTTGAGGATC+TGG | + | chr3_1:60133613-60133632 | Msa0365850:intron | 45.0% | |
| TAGGGAAACTATGCTGTCTC+TGG | + | chr3_1:60133716-60133735 | Msa0365850:intron | 45.0% | |
| AGCCAAAGCGAAGTCTTTCA+AGG | + | chr3_1:60133766-60133785 | Msa0365850:CDS | 45.0% | |
| AGCCTTGAAAGACTTCGCTT+TGG | - | chr3_1:60133771-60133790 | None:intergenic | 45.0% | |
| GAAGTCTTTCAAGGCTCGAA+TGG | + | chr3_1:60133775-60133794 | Msa0365850:CDS | 45.0% | |
| ! | TCTTGGGGTTCTAATGTCTG+TGG | - | chr3_1:60133960-60133979 | None:intergenic | 45.0% |
| ! | ATGTGGCAGAGCATTTACGT+TGG | - | chr3_1:60133996-60134015 | None:intergenic | 45.0% |
| TATTGGCACAACAGGTATGC+AGG | + | chr3_1:60134041-60134060 | Msa0365850:intron | 45.0% | |
| GCACTTCTAATGCAATTGGC+AGG | + | chr3_1:60134111-60134130 | Msa0365850:intron | 45.0% | |
| ! | ATAGCTTTTCTTCAGCCCCT+TGG | - | chr3_1:60134182-60134201 | None:intergenic | 45.0% |
| CTATGAATTGGGACCTGGAA+AGG | + | chr3_1:60134198-60134217 | Msa0365850:CDS | 45.0% | |
| ! | TGGACTCTTCAGGTTATTGC+TGG | + | chr3_1:60134309-60134328 | Msa0365850:intron | 45.0% |
| TCGGAGCTTAAGAAGTTTGC+AGG | + | chr3_1:60134373-60134392 | Msa0365850:exon | 45.0% | |
| GCAGGAAATTGCTATGTGTG+TGG | + | chr3_1:60134391-60134410 | Msa0365850:three_prime_UTR | 45.0% | |
| TTGAGATCCAGTGGAGATGG+TGG | - | chr3_1:60130921-60130940 | None:intergenic | 50.0% | |
| TCCAATGCGTTTCTCTTCCC+TGG | + | chr3_1:60130980-60130999 | Msa0365850:CDS | 50.0% | |
| ACCAGGGAAGAGAAACGCAT+TGG | - | chr3_1:60130984-60131003 | None:intergenic | 50.0% | |
| TTGTAGGGTGCACAAGCTGT+TGG | + | chr3_1:60131089-60131108 | Msa0365850:intron | 50.0% | |
| GGTGCACAAGCTGTTGGAAT+GGG | + | chr3_1:60131095-60131114 | Msa0365850:CDS | 50.0% | |
| CGAAACGGCATGAAGTTAGG+TGG | + | chr3_1:60131454-60131473 | Msa0365850:intron | 50.0% | |
| CATTGGATGGAATGTGGTGC+AGG | - | chr3_1:60131558-60131577 | None:intergenic | 50.0% | |
| GTGCTCAAGTGCAGACAATG+CGG | - | chr3_1:60132402-60132421 | None:intergenic | 50.0% | |
| ! | TACAGAGGAGGTCTAAGGTC+TGG | - | chr3_1:60132440-60132459 | None:intergenic | 50.0% |
| AGACTTGTGACATACAGGGC+AGG | - | chr3_1:60132654-60132673 | None:intergenic | 50.0% | |
| TGCTGCTGTTGAGCTACTTC+GGG | + | chr3_1:60132674-60132693 | Msa0365850:CDS | 50.0% | |
| TATACTGCTCTGGCGTTTGC+TGG | + | chr3_1:60132762-60132781 | Msa0365850:CDS | 50.0% | |
| ATACTGCTCTGGCGTTTGCT+GGG | + | chr3_1:60132763-60132782 | Msa0365850:CDS | 50.0% | |
| CATACTGGAAACCCCGTAGT+TGG | - | chr3_1:60133020-60133039 | None:intergenic | 50.0% | |
| GAAGCCATGCAGGTAATCTG+TGG | + | chr3_1:60133353-60133372 | Msa0365850:intron | 50.0% | |
| TAGTAGCATCAGCAGCATCC+TGG | - | chr3_1:60133476-60133495 | None:intergenic | 50.0% | |
| CAGTCCTACCACACTAACCA+TGG | - | chr3_1:60133505-60133524 | None:intergenic | 50.0% | |
| CATGGTTAGTGTGGTAGGAC+TGG | + | chr3_1:60133503-60133522 | Msa0365850:CDS | 50.0% | |
| GTTGTGTGATGCAGCCAATC+AGG | + | chr3_1:60133545-60133564 | Msa0365850:CDS | 50.0% | |
| AGCTTCAGGCACTTCCTGAT+TGG | - | chr3_1:60133562-60133581 | None:intergenic | 50.0% | |
| GGAAACTATGCTGTCTCTGG+AGG | + | chr3_1:60133719-60133738 | Msa0365850:CDS | 50.0% | |
| ! | GCTGTCTCTGGAGGCATAAA+AGG | + | chr3_1:60133728-60133747 | Msa0365850:CDS | 50.0% |
| GGAACCTGCAGTGTCAAGAT+TGG | + | chr3_1:60133919-60133938 | Msa0365850:CDS | 50.0% | |
| GCTTCCAATCTTGACACTGC+AGG | - | chr3_1:60133926-60133945 | None:intergenic | 50.0% | |
| ! | GTTTTCGCCACCATCTCCAC+TGG | + | chr3_1:60130911-60130930 | Msa0365850:CDS | 55.0% |
| TGCGTTTCTCTTCCCTGGTC+AGG | + | chr3_1:60130985-60131004 | Msa0365850:CDS | 55.0% | |
| GGGTGCACAAGCTGTTGGAA+TGG | + | chr3_1:60131094-60131113 | Msa0365850:intron | 55.0% | |
| !! | ATTAGACGGGGCTGGCTACA+TGG | + | chr3_1:60132265-60132284 | Msa0365850:intron | 55.0% |
| AAGGTCTGGTGAGGAGGGAA+TGG | - | chr3_1:60132426-60132445 | None:intergenic | 55.0% | |
| ! | GGTCTAAGGTCTGGTGAGGA+GGG | - | chr3_1:60132431-60132450 | None:intergenic | 55.0% |
| ! | AGGTCTAAGGTCTGGTGAGG+AGG | - | chr3_1:60132432-60132451 | None:intergenic | 55.0% |
| ! | AGGAGGTCTAAGGTCTGGTG+AGG | - | chr3_1:60132435-60132454 | None:intergenic | 55.0% |
| ! | TACTGCTCTGGCGTTTGCTG+GGG | + | chr3_1:60132764-60132783 | Msa0365850:CDS | 55.0% |
| ACTAAGGGGTGAAGCCATGC+AGG | + | chr3_1:60133343-60133362 | Msa0365850:CDS | 55.0% | |
| ! | GGTGCCATGGTTAGTGTGGT+AGG | + | chr3_1:60133498-60133517 | Msa0365850:CDS | 55.0% |
| GGTAGGACTGGACTCAGAGA+AGG | + | chr3_1:60133515-60133534 | Msa0365850:CDS | 55.0% | |
| TGGCTGCATCACACAACTGC+TGG | - | chr3_1:60133542-60133561 | None:intergenic | 55.0% | |
| !! | GGAAGTGCCTGAAGCTGAGA+AGG | + | chr3_1:60133566-60133585 | Msa0365850:CDS | 55.0% |
| ! | TGCCTTTTCCTCATGGTGGC+AGG | + | chr3_1:60133856-60133875 | Msa0365850:intron | 55.0% |
| CACCTGCCACCATGAGGAAA+AGG | - | chr3_1:60133861-60133880 | None:intergenic | 55.0% | |
| TGAGCTACTTCGGGCACGTG+AGG | + | chr3_1:60132683-60132702 | Msa0365850:CDS | 60.0% | |
| GAGCTACTTCGGGCACGTGA+GGG | + | chr3_1:60132684-60132703 | Msa0365850:CDS | 60.0% | |
| ! | TGGCGTTTGCTGGGGCTTTC+AGG | + | chr3_1:60132772-60132791 | Msa0365850:CDS | 60.0% |
| CTACTTCGGGCACGTGAGGG+AGG | + | chr3_1:60132687-60132706 | Msa0365850:CDS | 65.0% | |
| !! | GGAAAGCGCCTGCAACAGCC+AGG | - | chr3_1:60133886-60133905 | None:intergenic | 65.0% |
| CAGGCGCACCTGCCACCATG+AGG | - | chr3_1:60133867-60133886 | None:intergenic | 70.0% | |
| CTCATGGTGGCAGGTGCGCC+TGG | + | chr3_1:60133865-60133884 | Msa0365850:intron | 70.0% | |
| CAGGTGCGCCTGGCTGTTGC+AGG | + | chr3_1:60133875-60133894 | Msa0365850:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 60130681 | 60134756 | 60130681 | ID=Msa0365850;Name=Msa0365850 |
| chr3_1 | mRNA | 60130681 | 60134756 | 60130681 | ID=Msa0365850-mRNA-1;Parent=Msa0365850;Name=Msa0365850-mRNA-1;_AED=0.13;_eAED=0.13;_QI=74|1|1|1|1|1|10|373|380 |
| chr3_1 | exon | 60130681 | 60131006 | 60130681 | ID=Msa0365850-mRNA-1:exon:11547;Parent=Msa0365850-mRNA-1 |
| chr3_1 | exon | 60131095 | 60131180 | 60131095 | ID=Msa0365850-mRNA-1:exon:11548;Parent=Msa0365850-mRNA-1 |
| chr3_1 | exon | 60131270 | 60131336 | 60131270 | ID=Msa0365850-mRNA-1:exon:11549;Parent=Msa0365850-mRNA-1 |
| chr3_1 | exon | 60132651 | 60132793 | 60132651 | ID=Msa0365850-mRNA-1:exon:11550;Parent=Msa0365850-mRNA-1 |
| chr3_1 | exon | 60133316 | 60133364 | 60133316 | ID=Msa0365850-mRNA-1:exon:11551;Parent=Msa0365850-mRNA-1 |
| chr3_1 | exon | 60133477 | 60133614 | 60133477 | ID=Msa0365850-mRNA-1:exon:11552;Parent=Msa0365850-mRNA-1 |
| chr3_1 | exon | 60133719 | 60133799 | 60133719 | ID=Msa0365850-mRNA-1:exon:11553;Parent=Msa0365850-mRNA-1 |
| chr3_1 | exon | 60133878 | 60134054 | 60133878 | ID=Msa0365850-mRNA-1:exon:11554;Parent=Msa0365850-mRNA-1 |
| chr3_1 | exon | 60134133 | 60134219 | 60134133 | ID=Msa0365850-mRNA-1:exon:11555;Parent=Msa0365850-mRNA-1 |
| chr3_1 | exon | 60134321 | 60134756 | 60134321 | ID=Msa0365850-mRNA-1:exon:11556;Parent=Msa0365850-mRNA-1 |
| chr3_1 | five_prime_UTR | 60130681 | 60130754 | 60130681 | ID=Msa0365850-mRNA-1:five_prime_utr;Parent=Msa0365850-mRNA-1 |
| chr3_1 | CDS | 60130755 | 60131006 | 60130755 | ID=Msa0365850-mRNA-1:cds;Parent=Msa0365850-mRNA-1 |
| chr3_1 | CDS | 60131095 | 60131180 | 60131095 | ID=Msa0365850-mRNA-1:cds;Parent=Msa0365850-mRNA-1 |
| chr3_1 | CDS | 60131270 | 60131336 | 60131270 | ID=Msa0365850-mRNA-1:cds;Parent=Msa0365850-mRNA-1 |
| chr3_1 | CDS | 60132651 | 60132793 | 60132651 | ID=Msa0365850-mRNA-1:cds;Parent=Msa0365850-mRNA-1 |
| chr3_1 | CDS | 60133316 | 60133364 | 60133316 | ID=Msa0365850-mRNA-1:cds;Parent=Msa0365850-mRNA-1 |
| chr3_1 | CDS | 60133477 | 60133614 | 60133477 | ID=Msa0365850-mRNA-1:cds;Parent=Msa0365850-mRNA-1 |
| chr3_1 | CDS | 60133719 | 60133799 | 60133719 | ID=Msa0365850-mRNA-1:cds;Parent=Msa0365850-mRNA-1 |
| chr3_1 | CDS | 60133878 | 60134054 | 60133878 | ID=Msa0365850-mRNA-1:cds;Parent=Msa0365850-mRNA-1 |
| chr3_1 | CDS | 60134133 | 60134219 | 60134133 | ID=Msa0365850-mRNA-1:cds;Parent=Msa0365850-mRNA-1 |
| chr3_1 | CDS | 60134321 | 60134383 | 60134321 | ID=Msa0365850-mRNA-1:cds;Parent=Msa0365850-mRNA-1 |
| chr3_1 | three_prime_UTR | 60134384 | 60134756 | 60134384 | ID=Msa0365850-mRNA-1:three_prime_utr;Parent=Msa0365850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
