AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0426160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0426160 MtrunA17_Chr3g0128051 95.413 218 2 1 1 210 1 218 4.60e-147 407
Msa0426160 MtrunA17_Chr3g0128041 74.561 228 39 5 1 210 1 227 3.25e-99 287
Msa0426160 MtrunA17_Chr7g0255421 66.000 150 38 3 69 210 59 203 8.28e-60 186
Msa0426160 MtrunA17_Chr3g0128591 62.121 132 32 3 83 210 382 499 7.63e-39 139
Msa0426160 MtrunA17_Chr3g0128571 92.857 42 3 0 168 209 21 62 5.13e-20 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0426160 AT3G49470.1 60.909 220 73 4 1 210 1 217 1.31e-67 207
Msa0426160 AT3G49470.2 67.045 176 48 3 36 201 33 208 3.36e-62 193
Msa0426160 AT4G10480.1 68.590 156 40 2 64 210 57 212 3.90e-61 190
Msa0426160 AT4G10480.2 69.281 153 38 2 67 210 59 211 8.84e-61 189
Msa0426160 AT1G33040.1 65.359 153 44 2 67 210 57 209 1.09e-58 184
Msa0426160 AT3G12390.1 64.000 150 43 2 69 210 57 203 1.06e-54 173
Msa0426160 AT5G13850.1 67.763 152 39 2 69 210 53 204 5.03e-54 172

Find 78 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAGACCTACGTTATATT+TGG 0.142242 3_2:+76546913 Msa0426160:CDS
AATCTCTGTTTCTTTCTTTC+GGG 0.186468 3_2:+76544770 Msa0426160:five_prime_UTR
TAATCTCTGTTTCTTTCTTT+CGG 0.192037 3_2:+76544769 Msa0426160:five_prime_UTR
ATAACGTAGGTCTCTGAATT+TGG 0.208217 3_2:-76546907 None:intergenic
ATCAAATGGTTCATATTGTT+TGG 0.254145 3_2:-76544669 None:intergenic
GGAAGTGGGCTTAAATGTTT+TGG 0.267378 3_2:+76544645 None:intergenic
CAGAGACCTACGTTATATTT+GGG 0.269261 3_2:+76546914 Msa0426160:CDS
TCAACCTCCTCTTCCTCTTC+AGG 0.290554 3_2:-76547060 None:intergenic
GCCATTATAGATCCCATATC+TGG 0.303001 3_2:-76547000 None:intergenic
TCAAATGGTTCATATTGTTT+GGG 0.356082 3_2:-76544668 None:intergenic
CACAAGCTGCTCAACAGTTC+AGG 0.364720 3_2:+76546974 Msa0426160:CDS
ACAGTTCAGGATGCCAGATA+TGG 0.369124 3_2:+76546987 Msa0426160:CDS
GCCAGATATGGGATCTATAA+TGG 0.384072 3_2:+76546999 Msa0426160:CDS
AACCCATTGATGGTGTTACT+AGG 0.392278 3_2:+76546538 Msa0426160:CDS
TACCCTAGTAACACCATCAA+TGG 0.408223 3_2:-76546541 None:intergenic
GAAAGAAACAGAGATTAGAT+AGG 0.411750 3_2:-76544763 None:intergenic
TTTGGACTCTTGAAGACATC+AGG 0.416876 3_2:-76546889 None:intergenic
TCGTTATCATCCTCGACAAT+AGG 0.425509 3_2:-76545014 None:intergenic
AGGCTCTCAAAACTCACAAT+GGG 0.426765 3_2:+76547157 Msa0426160:CDS
TTTGAGAGCCTTGACAGCCT+TGG 0.440959 3_2:-76547145 None:intergenic
ACCACTCTCTCCACATCAAA+TGG 0.446890 3_2:-76544683 None:intergenic
GAAGAGGAGGTTGATGAAAC+TGG 0.453955 3_2:+76547069 Msa0426160:CDS
CGTCGACGGAGGGAAGTTGT+TGG 0.458861 3_2:-76544867 None:intergenic
TCGAAAAGCAATGTTGAAGC+TGG 0.458999 3_2:+76546509 Msa0426160:CDS
TTGTTGGTCGGTGGCTTCGT+CGG 0.466936 3_2:-76544851 None:intergenic
CTTGAGCGTTGTTTCGTCGA+CGG 0.472022 3_2:-76544881 None:intergenic
GAGCTGGTAATGACACAAGC+TGG 0.474762 3_2:+76547111 Msa0426160:CDS
GTCGGCGGCAGCGTCAATGA+TGG 0.479255 3_2:-76544833 None:intergenic
ACTCACAATGGGGACATTGT+TGG 0.489937 3_2:+76547168 Msa0426160:CDS
GTGTCTGCAACTGAGAGCTC+AGG 0.502334 3_2:-76546954 None:intergenic
ACCCTAGTAACACCATCAAT+GGG 0.510907 3_2:-76546540 None:intergenic
TTAATTAGTTAGTTCCATGA+TGG 0.513698 3_2:-76547193 None:intergenic
CAGTTCAGGATGCCAGATAT+GGG 0.516112 3_2:+76546988 Msa0426160:CDS
CTGGGACTAAAACCCATTGA+TGG 0.518737 3_2:+76546528 Msa0426160:CDS
ACCCATTGATGGTGTTACTA+GGG 0.519807 3_2:+76546539 Msa0426160:CDS
AAATGGAAAACCTGGGGAAG+TGG 0.520651 3_2:-76544910 None:intergenic
AGCACAGCCTGAAGAGGAAG+AGG 0.523112 3_2:+76547053 Msa0426160:CDS
TCGGCGGCAGCGTCAATGAT+GGG 0.536510 3_2:-76544832 None:intergenic
GTCAAAAGCCAAGGCTGTCA+AGG 0.539706 3_2:+76547137 Msa0426160:CDS
ATATCCTTAGCCATGTCTCC+AGG 0.541939 3_2:+76544808 Msa0426160:exon
CGAAAAGCAATGTTGAAGCT+GGG 0.542413 3_2:+76546510 Msa0426160:CDS
CAAGAACAAACCACTTCCCC+AGG 0.549171 3_2:+76544900 Msa0426160:CDS
TCATTACCAGCTCAATGTCG+TGG 0.549319 3_2:-76547101 None:intergenic
CAACACTCAACACGTGCGAA+TGG 0.550402 3_2:-76544736 None:intergenic
AAGGCTCTCAAAACTCACAA+TGG 0.552612 3_2:+76547156 Msa0426160:CDS
GGACATTGTTGGTGCCATCA+TGG 0.557792 3_2:+76547179 Msa0426160:CDS
GCAGCGTCAATGATGGGACC+TGG 0.558575 3_2:-76544826 None:intergenic
GGAGGGAAGTTGTTGGTCGG+TGG 0.561823 3_2:-76544860 None:intergenic
GAACAAGGTGCTGCAGCTGA+TGG 0.562947 3_2:+76547030 Msa0426160:CDS
CATTCGCACGTGTTGAGTGT+TGG 0.564014 3_2:+76544737 Msa0426160:five_prime_UTR
AGCGTTGTTTCGTCGACGGA+GGG 0.566503 3_2:-76544877 None:intergenic
AGCTGGTAATGACACAAGCT+GGG 0.566806 3_2:+76547112 Msa0426160:CDS
GAGCGTTGTTTCGTCGACGG+AGG 0.566873 3_2:-76544878 None:intergenic
GTGGAGAGAGTGGTGAATGA+AGG 0.580814 3_2:+76544692 Msa0426160:five_prime_UTR
AGCTGGGGTGTCAAAAGCCA+AGG 0.583545 3_2:+76547128 Msa0426160:CDS
ACAATATGAACCATTTGATG+TGG 0.584048 3_2:+76544673 Msa0426160:five_prime_UTR
GGAGGCCCACGACATTGAGC+TGG 0.585026 3_2:+76547095 Msa0426160:CDS
ACAGCCTGAAGAGGAAGAGG+AGG 0.588386 3_2:+76547056 Msa0426160:CDS
GACGGAGGGAAGTTGTTGGT+CGG 0.592423 3_2:-76544863 None:intergenic
TTGGTCGGTGGCTTCGTCGG+CGG 0.592563 3_2:-76544848 None:intergenic
CATTACCAGCTCAATGTCGT+GGG 0.601311 3_2:-76547100 None:intergenic
TGATGGAGCACAGCCTGAAG+AGG 0.604282 3_2:+76547047 Msa0426160:CDS
AATGATGGGACCTGGAGACA+TGG 0.605793 3_2:-76544818 None:intergenic
AGAGACCTACGTTATATTTG+GGG 0.608062 3_2:+76546915 Msa0426160:CDS
GACCTACGTTATATTTGGGG+AGG 0.613942 3_2:+76546918 Msa0426160:CDS
GGGACCTGGAGACATGGCTA+AGG 0.621904 3_2:-76544812 None:intergenic
GGAGGTTGATGAAACTGGCG+TGG 0.623179 3_2:+76547074 Msa0426160:CDS
CGAGATGTAGGTGGTACTGA+AGG 0.629687 3_2:+76546456 Msa0426160:intron
TGACGACAAAGACGAATCTG+AGG 0.650663 3_2:+76545037 Msa0426160:CDS
AGATGATGCTCCTATTGTCG+AGG 0.659014 3_2:+76545004 Msa0426160:CDS
GGTTGATGAAACTGGCGTGG+AGG 0.659813 3_2:+76547077 Msa0426160:CDS
TGCCTCCCCAAATATAACGT+AGG 0.662269 3_2:-76546920 None:intergenic
ACCATTTGATGTGGAGAGAG+TGG 0.663331 3_2:+76544682 Msa0426160:five_prime_UTR
GCGAATGGATGAAAGAAATG+AGG 0.669534 3_2:-76544721 None:intergenic
GAAGACGACGAATCTCCTCA+AGG 0.684211 3_2:+76545065 Msa0426160:CDS
GGCTCTCAAAACTCACAATG+GGG 0.691219 3_2:+76547158 Msa0426160:CDS
ATAATGGCAAAACAAGAACA+AGG 0.704410 3_2:+76547015 Msa0426160:CDS
GCTGGTAATGACACAAGCTG+GGG 0.796663 3_2:+76547113 Msa0426160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTATTTAAATTAGTTA+GGG - chr3_2:76545634-76545653 None:intergenic 10.0%
!!! TTTTGTATTTAAATTAGTTA+GGG + chr3_2:76545634-76545653 Msa0426160:intron 10.0%
!! CAAAATAGAGAATAAATATA+TGG - chr3_2:76544947-76544966 None:intergenic 15.0%
!!! CATATATTTATTCTCTATTT+TGG + chr3_2:76544945-76544964 Msa0426160:intron 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG - chr3_2:76545635-76545654 None:intergenic 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG - chr3_2:76545633-76545652 None:intergenic 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG + chr3_2:76545633-76545652 Msa0426160:intron 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG + chr3_2:76545635-76545654 Msa0426160:intron 15.0%
!!! CAAGAATTCTAAAAAAATAA+AGG - chr3_2:76545781-76545800 None:intergenic 15.0%
!!! TCATTTTCTCAAAAATTTAT+GGG + chr3_2:76545947-76545966 Msa0426160:intron 15.0%
!!! TATTTTCTCAAATTATTGTT+GGG - chr3_2:76546092-76546111 None:intergenic 15.0%
!!! TATCTGTTGATTTATTTTTT+TGG + chr3_2:76546429-76546448 Msa0426160:intron 15.0%
!! GTATTATTAACATCGTTTAA+TGG + chr3_2:76545100-76545119 Msa0426160:intron 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG - chr3_2:76545636-76545655 None:intergenic 20.0%
!! ATTGAAATCCAAAGAAAATT+AGG + chr3_2:76545508-76545527 Msa0426160:intron 20.0%
!! TTGAAATCCAAAGAAAATTA+GGG + chr3_2:76545509-76545528 Msa0426160:intron 20.0%
!!! TTTAATTTTTTTTTTGGCCT+TGG + chr3_2:76545572-76545591 Msa0426160:intron 20.0%
!!! TTAATTTTTTTTTTGGCCTT+GGG + chr3_2:76545573-76545592 Msa0426160:intron 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG + chr3_2:76545636-76545655 Msa0426160:intron 20.0%
!!! ATCAAAGAGTTTTAAAAAGT+AGG - chr3_2:76545710-76545729 None:intergenic 20.0%
!!! GTCATTTTCTCAAAAATTTA+TGG + chr3_2:76545946-76545965 Msa0426160:intron 20.0%
!!! CTATTTTCTCAAATTATTGT+TGG - chr3_2:76546093-76546112 None:intergenic 20.0%
!! ATTGAAGATACATAAGAAAA+AGG - chr3_2:76546375-76546394 None:intergenic 20.0%
!! TAATTTCTTTATACCTTGTT+AGG + chr3_2:76546846-76546865 Msa0426160:intron 20.0%
! TCAAATGGTTCATATTGTTT+GGG - chr3_2:76544671-76544690 None:intergenic 25.0%
! ATCAAATGGTTCATATTGTT+TGG - chr3_2:76544672-76544691 None:intergenic 25.0%
!! TAATCTCTGTTTCTTTCTTT+CGG + chr3_2:76544769-76544788 Msa0426160:five_prime_UTR 25.0%
! AATAAATATATGGAATCCGA+TGG - chr3_2:76544937-76544956 None:intergenic 25.0%
!!! AACCTTAGCTTTTACTTTTT+AGG + chr3_2:76545399-76545418 Msa0426160:intron 25.0%
! TCTTTGGATTTCAATACTTA+GGG - chr3_2:76545503-76545522 None:intergenic 25.0%
! TTCTTTGGATTTCAATACTT+AGG - chr3_2:76545504-76545523 None:intergenic 25.0%
! TGAAATCCAAAGAAAATTAG+GGG + chr3_2:76545510-76545529 Msa0426160:intron 25.0%
!!! TAATTTTTTTTTTGGCCTTG+GGG + chr3_2:76545574-76545593 Msa0426160:intron 25.0%
! AATTCTTGTATTCTTGTTCT+GGG + chr3_2:76545793-76545812 Msa0426160:intron 25.0%
! AACTATAATCTATGTTGCAT+AGG - chr3_2:76545832-76545851 None:intergenic 25.0%
! CTATTCTCACATCATTATAA+AGG + chr3_2:76546194-76546213 Msa0426160:intron 25.0%
! ATGAAAAACATAACCTAACA+AGG - chr3_2:76546862-76546881 None:intergenic 25.0%
! TTAATTAGTTAGTTCCATGA+TGG - chr3_2:76547196-76547215 None:intergenic 25.0%
ACAATATGAACCATTTGATG+TGG + chr3_2:76544673-76544692 Msa0426160:five_prime_UTR 30.0%
GAAAGAAACAGAGATTAGAT+AGG - chr3_2:76544766-76544785 None:intergenic 30.0%
! AATCTCTGTTTCTTTCTTTC+GGG + chr3_2:76544770-76544789 Msa0426160:five_prime_UTR 30.0%
!!! CTGTTTTCTGTTTTTTCCTT+AGG + chr3_2:76544977-76544996 Msa0426160:intron 30.0%
TACTATAAGATTCTACCTTG+AGG - chr3_2:76545083-76545102 None:intergenic 30.0%
AGCCTAAAAAGTAAAAGCTA+AGG - chr3_2:76545404-76545423 None:intergenic 30.0%
! TTTAGGCTTAATTGCACTTT+TGG + chr3_2:76545416-76545435 Msa0426160:intron 30.0%
TTTGGATTTCAATACTTAGG+GGG - chr3_2:76545501-76545520 None:intergenic 30.0%
CTTTGGATTTCAATACTTAG+GGG - chr3_2:76545502-76545521 None:intergenic 30.0%
GAAATCCAAAGAAAATTAGG+GGG + chr3_2:76545511-76545530 Msa0426160:intron 30.0%
!!! AATTTTTTTTTTGGCCTTGG+GGG + chr3_2:76545575-76545594 Msa0426160:intron 30.0%
! TATTGAATCTTTGGCAGTTT+TGG - chr3_2:76545602-76545621 None:intergenic 30.0%
TGCCAAAGATTCAATACTTA+GGG + chr3_2:76545606-76545625 Msa0426160:intron 30.0%
GAATTCTTGTATTCTTGTTC+TGG + chr3_2:76545792-76545811 Msa0426160:intron 30.0%
TAATCTATGTTGCATAGGTA+CGG - chr3_2:76545827-76545846 None:intergenic 30.0%
GACAATGCAATTACATGTAT+CGG - chr3_2:76545929-76545948 None:intergenic 30.0%
!! AGAAAGTGTCACAAATTTCA+GGG + chr3_2:76546295-76546314 Msa0426160:intron 30.0%
ATGCACATTGTGATTTATCT+AGG - chr3_2:76546350-76546369 None:intergenic 30.0%
AATCAACAGATAACATCAGA+GGG - chr3_2:76546421-76546440 None:intergenic 30.0%
AAATCAACAGATAACATCAG+AGG - chr3_2:76546422-76546441 None:intergenic 30.0%
CGTAGAGGAATTTAAACTAA+TGG + chr3_2:76546614-76546633 Msa0426160:intron 30.0%
ATAATGGCAAAACAAGAACA+AGG + chr3_2:76547015-76547034 Msa0426160:CDS 30.0%
ATATGGAATCCGATGGAAAA+TGG - chr3_2:76544930-76544949 None:intergenic 35.0%
AGAACAAGGCATAGTACAAA+TGG - chr3_2:76545175-76545194 None:intergenic 35.0%
CAGGTTCTTGCAAGTAAAAT+CGG + chr3_2:76545214-76545233 Msa0426160:intron 35.0%
ATCAGGTATATATCTGGTAC+AGG - chr3_2:76545247-76545266 None:intergenic 35.0%
TATCGTACTTGGGTTTCTAT+TGG + chr3_2:76545278-76545297 Msa0426160:intron 35.0%
!!! GCAAGTTTTGAAAAGATAGG+GGG - chr3_2:76545442-76545461 None:intergenic 35.0%
!!! CGCAAGTTTTGAAAAGATAG+GGG - chr3_2:76545443-76545462 None:intergenic 35.0%
!!! CCGCAAGTTTTGAAAAGATA+GGG - chr3_2:76545444-76545463 None:intergenic 35.0%
! CCCTATCTTTTCAAAACTTG+CGG + chr3_2:76545441-76545460 Msa0426160:intron 35.0%
!!! ACCGCAAGTTTTGAAAAGAT+AGG - chr3_2:76545445-76545464 None:intergenic 35.0%
!!! ATTTTTTTTTTGGCCTTGGG+GGG + chr3_2:76545576-76545595 Msa0426160:intron 35.0%
CTGCCAAAGATTCAATACTT+AGG + chr3_2:76545605-76545624 Msa0426160:intron 35.0%
GCCAAAGATTCAATACTTAG+GGG + chr3_2:76545607-76545626 Msa0426160:intron 35.0%
CCAAAGATTCAATACTTAGG+GGG + chr3_2:76545608-76545627 Msa0426160:intron 35.0%
! AGTAGGCTTAATTGCACTTT+TGG - chr3_2:76545693-76545712 None:intergenic 35.0%
AATCTATGTTGCATAGGTAC+GGG - chr3_2:76545826-76545845 None:intergenic 35.0%
!!! TATCGGTTTTGTTTCAGTGT+CGG - chr3_2:76545912-76545931 None:intergenic 35.0%
AAAGATAACCTATGAAGCAC+GGG - chr3_2:76545984-76546003 None:intergenic 35.0%
CAAAGATAACCTATGAAGCA+CGG - chr3_2:76545985-76546004 None:intergenic 35.0%
CAGTGCTTCATAGATAAGAA+TGG - chr3_2:76546030-76546049 None:intergenic 35.0%
! GCAAAGTGCAATGCTAATTT+TGG + chr3_2:76546265-76546284 Msa0426160:intron 35.0%
!! CAGAAAGTGTCACAAATTTC+AGG + chr3_2:76546294-76546313 Msa0426160:intron 35.0%
GGTCATAGTTATGACCTATA+GGG + chr3_2:76546316-76546335 Msa0426160:intron 35.0%
!!! TTTTTTGGACTTCGAGATGT+AGG + chr3_2:76546444-76546463 Msa0426160:intron 35.0%
! AAGTCCAAAGTGCTATCAAA+TGG + chr3_2:76546663-76546682 Msa0426160:intron 35.0%
ATAACGTAGGTCTCTGAATT+TGG - chr3_2:76546910-76546929 None:intergenic 35.0%
TCAGAGACCTACGTTATATT+TGG + chr3_2:76546913-76546932 Msa0426160:CDS 35.0%
CAGAGACCTACGTTATATTT+GGG + chr3_2:76546914-76546933 Msa0426160:CDS 35.0%
AGAGACCTACGTTATATTTG+GGG + chr3_2:76546915-76546934 Msa0426160:CDS 35.0%
GCGAATGGATGAAAGAAATG+AGG - chr3_2:76544724-76544743 None:intergenic 40.0%
GATGGAAAATGGAAAACCTG+GGG - chr3_2:76544919-76544938 None:intergenic 40.0%
CGATGGAAAATGGAAAACCT+GGG - chr3_2:76544920-76544939 None:intergenic 40.0%
! CCAGGTTTTCCATTTTCCAT+CGG + chr3_2:76544918-76544937 Msa0426160:intron 40.0%
TCGTTATCATCCTCGACAAT+AGG - chr3_2:76545017-76545036 None:intergenic 40.0%
! TGTACTATGCCTTGTTCTAG+AGG + chr3_2:76545177-76545196 Msa0426160:intron 40.0%
! GTACTATGCCTTGTTCTAGA+GGG + chr3_2:76545178-76545197 Msa0426160:intron 40.0%
!! TACATGTACCCTCTAGAACA+AGG - chr3_2:76545189-76545208 None:intergenic 40.0%
! AGAGGGTACATGTAAAACTC+AGG + chr3_2:76545195-76545214 Msa0426160:intron 40.0%
ACGGGTATCAGGTATATATC+TGG - chr3_2:76545253-76545272 None:intergenic 40.0%
ACCCAAGTACGATACACATA+CGG - chr3_2:76545272-76545291 None:intergenic 40.0%
!! CCCCCTAAGTATTGAATCTT+TGG - chr3_2:76545611-76545630 None:intergenic 40.0%
!!! ACCGCAAGTTTTGGAAAGAT+AGG + chr3_2:76545664-76545683 Msa0426160:intron 40.0%
CCCTATCTTTCCAAAACTTG+CGG - chr3_2:76545668-76545687 None:intergenic 40.0%
!!! CCGCAAGTTTTGGAAAGATA+GGG + chr3_2:76545665-76545684 Msa0426160:intron 40.0%
!!! CGCAAGTTTTGGAAAGATAG+GGG + chr3_2:76545666-76545685 Msa0426160:intron 40.0%
!!! GCAAGTTTTGGAAAGATAGG+GGG + chr3_2:76545667-76545686 Msa0426160:intron 40.0%
!!! ATCGGTTTTGTTTCAGTGTC+GGG - chr3_2:76545911-76545930 None:intergenic 40.0%
GGGTCATAGTTATGACCTAT+AGG + chr3_2:76546315-76546334 Msa0426160:intron 40.0%
TCTAGGTCAAAAAGCCCTAT+AGG - chr3_2:76546333-76546352 None:intergenic 40.0%
TCGAAAAGCAATGTTGAAGC+TGG + chr3_2:76546509-76546528 Msa0426160:CDS 40.0%
CGAAAAGCAATGTTGAAGCT+GGG + chr3_2:76546510-76546529 Msa0426160:CDS 40.0%
!! AACCCATTGATGGTGTTACT+AGG + chr3_2:76546538-76546557 Msa0426160:CDS 40.0%
!! ACCCATTGATGGTGTTACTA+GGG + chr3_2:76546539-76546558 Msa0426160:CDS 40.0%
ACCCTAGTAACACCATCAAT+GGG - chr3_2:76546543-76546562 None:intergenic 40.0%
TACCCTAGTAACACCATCAA+TGG - chr3_2:76546544-76546563 None:intergenic 40.0%
CTGTTGTCAAATAGACGTAG+AGG + chr3_2:76546599-76546618 Msa0426160:intron 40.0%
GCTATTGTCATGTAGCACAA+TGG + chr3_2:76546697-76546716 Msa0426160:intron 40.0%
CACGTTCTTTCTGTGATCTA+TGG + chr3_2:76546802-76546821 Msa0426160:intron 40.0%
GTTCTTTCTGTGATCTATGG+TGG + chr3_2:76546805-76546824 Msa0426160:intron 40.0%
TTTGGACTCTTGAAGACATC+AGG - chr3_2:76546892-76546911 None:intergenic 40.0%
ATTTGGGGAGGCAAAAATAG+AGG + chr3_2:76546930-76546949 Msa0426160:CDS 40.0%
GCCAGATATGGGATCTATAA+TGG + chr3_2:76546999-76547018 Msa0426160:CDS 40.0%
GCCATTATAGATCCCATATC+TGG - chr3_2:76547003-76547022 None:intergenic 40.0%
AAGGCTCTCAAAACTCACAA+TGG + chr3_2:76547156-76547175 Msa0426160:CDS 40.0%
AGGCTCTCAAAACTCACAAT+GGG + chr3_2:76547157-76547176 Msa0426160:CDS 40.0%
ACCATTTGATGTGGAGAGAG+TGG + chr3_2:76544682-76544701 Msa0426160:five_prime_UTR 45.0%
ACCACTCTCTCCACATCAAA+TGG - chr3_2:76544686-76544705 None:intergenic 45.0%
ATATCCTTAGCCATGTCTCC+AGG + chr3_2:76544808-76544827 Msa0426160:exon 45.0%
AAATGGAAAACCTGGGGAAG+TGG - chr3_2:76544913-76544932 None:intergenic 45.0%
CCGATGGAAAATGGAAAACC+TGG - chr3_2:76544921-76544940 None:intergenic 45.0%
! GGAGCATCATCTTCTTCCTA+AGG - chr3_2:76544996-76545015 None:intergenic 45.0%
AGATGATGCTCCTATTGTCG+AGG + chr3_2:76545004-76545023 Msa0426160:CDS 45.0%
TGACGACAAAGACGAATCTG+AGG + chr3_2:76545037-76545056 Msa0426160:CDS 45.0%
ACGATACACATACGGGTATC+AGG - chr3_2:76545264-76545283 None:intergenic 45.0%
ACCCGTATGTGTATCGTACT+TGG + chr3_2:76545267-76545286 Msa0426160:intron 45.0%
CCCAAGTACGATACACATAC+GGG - chr3_2:76545271-76545290 None:intergenic 45.0%
CCCGTATGTGTATCGTACTT+GGG + chr3_2:76545268-76545287 Msa0426160:intron 45.0%
! GTCAGCCCCCTAATTTTCTT+TGG - chr3_2:76545519-76545538 None:intergenic 45.0%
TGACACGTGCACCTCATTTA+GGG - chr3_2:76545548-76545567 None:intergenic 45.0%
ATGACACGTGCACCTCATTT+AGG - chr3_2:76545549-76545568 None:intergenic 45.0%
ATTGACACGTGTCGAACAAC+GGG - chr3_2:76545887-76545906 None:intergenic 45.0%
CATTGACACGTGTCGAACAA+CGG - chr3_2:76545888-76545907 None:intergenic 45.0%
TGTCTGTGTCATGTTGCTGT+CGG + chr3_2:76546121-76546140 Msa0426160:intron 45.0%
! TCAGAGGGCACACATGTATA+TGG - chr3_2:76546406-76546425 None:intergenic 45.0%
TTTGGACTTCGAGATGTAGG+TGG + chr3_2:76546447-76546466 Msa0426160:intron 45.0%
CTGGGACTAAAACCCATTGA+TGG + chr3_2:76546528-76546547 Msa0426160:CDS 45.0%
! GACGCCATTTGATAGCACTT+TGG - chr3_2:76546670-76546689 None:intergenic 45.0%
TCACGAATCGCGAAAGATAG+TGG - chr3_2:76546735-76546754 None:intergenic 45.0%
!! TCTGTGATCTATGGTGGATG+AGG + chr3_2:76546811-76546830 Msa0426160:intron 45.0%
GACCTACGTTATATTTGGGG+AGG + chr3_2:76546918-76546937 Msa0426160:CDS 45.0%
TGCCTCCCCAAATATAACGT+AGG - chr3_2:76546923-76546942 None:intergenic 45.0%
ACAGTTCAGGATGCCAGATA+TGG + chr3_2:76546987-76547006 Msa0426160:CDS 45.0%
CAGTTCAGGATGCCAGATAT+GGG + chr3_2:76546988-76547007 Msa0426160:CDS 45.0%
!! GAAGAGGAGGTTGATGAAAC+TGG + chr3_2:76547069-76547088 Msa0426160:CDS 45.0%
CATTACCAGCTCAATGTCGT+GGG - chr3_2:76547103-76547122 None:intergenic 45.0%
TCATTACCAGCTCAATGTCG+TGG - chr3_2:76547104-76547123 None:intergenic 45.0%
! AGCTGGTAATGACACAAGCT+GGG + chr3_2:76547112-76547131 Msa0426160:CDS 45.0%
GGCTCTCAAAACTCACAATG+GGG + chr3_2:76547158-76547177 Msa0426160:CDS 45.0%
ACTCACAATGGGGACATTGT+TGG + chr3_2:76547168-76547187 Msa0426160:CDS 45.0%
!!! CATTTTTTTAATTTTTTTTT+TGG + chr3_2:76545566-76545585 Msa0426160:intron 5.0%
GTGGAGAGAGTGGTGAATGA+AGG + chr3_2:76544692-76544711 Msa0426160:five_prime_UTR 50.0%
CAACACTCAACACGTGCGAA+TGG - chr3_2:76544739-76544758 None:intergenic 50.0%
CATTCGCACGTGTTGAGTGT+TGG + chr3_2:76544737-76544756 Msa0426160:five_prime_UTR 50.0%
! AATGATGGGACCTGGAGACA+TGG - chr3_2:76544821-76544840 None:intergenic 50.0%
! CTTGAGCGTTGTTTCGTCGA+CGG - chr3_2:76544884-76544903 None:intergenic 50.0%
CAAGAACAAACCACTTCCCC+AGG + chr3_2:76544900-76544919 Msa0426160:CDS 50.0%
GAAGACGACGAATCTCCTCA+AGG + chr3_2:76545065-76545084 Msa0426160:CDS 50.0%
AGAAAATTAGGGGGCTGACG+TGG + chr3_2:76545520-76545539 Msa0426160:intron 50.0%
TGTCTTTGCCCGTGCTTCAT+AGG + chr3_2:76545973-76545992 Msa0426160:intron 50.0%
GTCATGTTGCTGTCGGACAT+TGG + chr3_2:76546128-76546147 Msa0426160:intron 50.0%
! CGAGATGTAGGTGGTACTGA+AGG + chr3_2:76546456-76546475 Msa0426160:intron 50.0%
TTCGCGATTCGTGATCGACA+AGG + chr3_2:76546741-76546760 Msa0426160:intron 50.0%
!! GTGATCTATGGTGGATGAGG+AGG + chr3_2:76546814-76546833 Msa0426160:intron 50.0%
CACAAGCTGCTCAACAGTTC+AGG + chr3_2:76546974-76546993 Msa0426160:CDS 50.0%
TCAACCTCCTCTTCCTCTTC+AGG - chr3_2:76547063-76547082 None:intergenic 50.0%
! GAGCTGGTAATGACACAAGC+TGG + chr3_2:76547111-76547130 Msa0426160:CDS 50.0%
! GCTGGTAATGACACAAGCTG+GGG + chr3_2:76547113-76547132 Msa0426160:CDS 50.0%
GTCAAAAGCCAAGGCTGTCA+AGG + chr3_2:76547137-76547156 Msa0426160:CDS 50.0%
TTTGAGAGCCTTGACAGCCT+TGG - chr3_2:76547148-76547167 None:intergenic 50.0%
!! GGACATTGTTGGTGCCATCA+TGG + chr3_2:76547179-76547198 Msa0426160:CDS 50.0%
TTGTTGGTCGGTGGCTTCGT+CGG - chr3_2:76544854-76544873 None:intergenic 55.0%
GACGGAGGGAAGTTGTTGGT+CGG - chr3_2:76544866-76544885 None:intergenic 55.0%
! AGCGTTGTTTCGTCGACGGA+GGG - chr3_2:76544880-76544899 None:intergenic 55.0%
CTGACGTGGCACCCTAAATG+AGG + chr3_2:76545534-76545553 Msa0426160:intron 55.0%
! GGGGCTGTAACCGCAAGTTT+TGG + chr3_2:76545655-76545674 Msa0426160:intron 55.0%
GTTGCTGTCGGACATTGGCA+CGG + chr3_2:76546133-76546152 Msa0426160:intron 55.0%
GTGTCTGCAACTGAGAGCTC+AGG - chr3_2:76546957-76546976 None:intergenic 55.0%
!! GAACAAGGTGCTGCAGCTGA+TGG + chr3_2:76547030-76547049 Msa0426160:CDS 55.0%
TGATGGAGCACAGCCTGAAG+AGG + chr3_2:76547047-76547066 Msa0426160:CDS 55.0%
AGCACAGCCTGAAGAGGAAG+AGG + chr3_2:76547053-76547072 Msa0426160:CDS 55.0%
ACAGCCTGAAGAGGAAGAGG+AGG + chr3_2:76547056-76547075 Msa0426160:CDS 55.0%
!! GGAGGTTGATGAAACTGGCG+TGG + chr3_2:76547074-76547093 Msa0426160:CDS 55.0%
!! GGTTGATGAAACTGGCGTGG+AGG + chr3_2:76547077-76547096 Msa0426160:CDS 55.0%
! AGCTGGGGTGTCAAAAGCCA+AGG + chr3_2:76547128-76547147 Msa0426160:CDS 55.0%
GGGACCTGGAGACATGGCTA+AGG - chr3_2:76544815-76544834 None:intergenic 60.0%
! GCAGCGTCAATGATGGGACC+TGG - chr3_2:76544829-76544848 None:intergenic 60.0%
TCGGCGGCAGCGTCAATGAT+GGG - chr3_2:76544835-76544854 None:intergenic 60.0%
GGAGGGAAGTTGTTGGTCGG+TGG - chr3_2:76544863-76544882 None:intergenic 60.0%
CGTCGACGGAGGGAAGTTGT+TGG - chr3_2:76544870-76544889 None:intergenic 60.0%
! GAGCGTTGTTTCGTCGACGG+AGG - chr3_2:76544881-76544900 None:intergenic 60.0%
!! TTGGCAGTTTTGGCCCCCCA+AGG - chr3_2:76545592-76545611 None:intergenic 60.0%
GTCGGCGGCAGCGTCAATGA+TGG - chr3_2:76544836-76544855 None:intergenic 65.0%
TTGGTCGGTGGCTTCGTCGG+CGG - chr3_2:76544851-76544870 None:intergenic 65.0%
GGAGGCCCACGACATTGAGC+TGG + chr3_2:76547095-76547114 Msa0426160:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 76544654 76547215 76544654 ID=Msa0426160;Name=Msa0426160
chr3_2 mRNA 76544654 76547215 76544654 ID=Msa0426160-mRNA-1;Parent=Msa0426160;Name=Msa0426160-mRNA-1;_AED=0.33;_eAED=0.33;_QI=166|0.66|0.5|1|1|1|4|0|210
chr3_2 exon 76544654 76544921 76544654 ID=Msa0426160-mRNA-1:exon:19760;Parent=Msa0426160-mRNA-1
chr3_2 exon 76544999 76545086 76544999 ID=Msa0426160-mRNA-1:exon:19761;Parent=Msa0426160-mRNA-1
chr3_2 exon 76546466 76546560 76546466 ID=Msa0426160-mRNA-1:exon:19762;Parent=Msa0426160-mRNA-1
chr3_2 exon 76546868 76547215 76546868 ID=Msa0426160-mRNA-1:exon:19763;Parent=Msa0426160-mRNA-1
chr3_2 five_prime_UTR 76544654 76544819 76544654 ID=Msa0426160-mRNA-1:five_prime_utr;Parent=Msa0426160-mRNA-1
chr3_2 CDS 76544820 76544921 76544820 ID=Msa0426160-mRNA-1:cds;Parent=Msa0426160-mRNA-1
chr3_2 CDS 76544999 76545086 76544999 ID=Msa0426160-mRNA-1:cds;Parent=Msa0426160-mRNA-1
chr3_2 CDS 76546466 76546560 76546466 ID=Msa0426160-mRNA-1:cds;Parent=Msa0426160-mRNA-1
chr3_2 CDS 76546868 76547215 76546868 ID=Msa0426160-mRNA-1:cds;Parent=Msa0426160-mRNA-1
Gene Sequence

>Msa0426160

ATGTCTCCAGGTCCCATCATTGACGCTGCCGCCGACGAAGCCACCGACCAACAACTTCCCTCCGTCGACGAAACAACGCTCAAGAACAAACCACTTCCCCAGGAAGAAGATGATGCTCCTATTGTCGAGGATGATAACGATGACGACAAAGACGAATCTGAGGACGAAGAAGACGACGAATCTCCTCAAGGTGGTACTGAAGGTTCAAAGCAAAGCAGAAGTGAGAAGAAGAGTCGAAAAGCAATGTTGAAGCTGGGACTAAAACCCATTGATGGTGTTACTAGGGTTATGTTTTTCATCTCGAAACCTGATGTCTTCAAGAGTCCAAATTCAGAGACCTACGTTATATTTGGGGAGGCAAAAATAGAGGACCTGAGCTCTCAGTTGCAGACACAAGCTGCTCAACAGTTCAGGATGCCAGATATGGGATCTATAATGGCAAAACAAGAACAAGGTGCTGCAGCTGATGGAGCACAGCCTGAAGAGGAAGAGGAGGTTGATGAAACTGGCGTGGAGGCCCACGACATTGAGCTGGTAATGACACAAGCTGGGGTGTCAAAAGCCAAGGCTGTCAAGGCTCTCAAAACTCACAATGGGGACATTGTTGGTGCCATCATGGAACTAACTAATTAA

Protein sequence

>Msa0426160

MSPGPIIDAAADEATDQQLPSVDETTLKNKPLPQEEDDAPIVEDDNDDDKDESEDEEDDESPQGGTEGSKQSRSEKKSRKAMLKLGLKPIDGVTRVMFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQTQAAQQFRMPDMGSIMAKQEQGAAADGAQPEEEEEVDETGVEAHDIELVMTQAGVSKAKAVKALKTHNGDIVGAIMELTN*