AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1382310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382310 MtrunA17_Chr1g0152141 96.860 605 5 2 1 605 1 591 0.0 1152
Msa1382310 MtrunA17_Chr1g0152151 96.364 605 8 2 1 605 1 591 0.0 1147
Msa1382310 MtrunA17_Chr5g0421251 65.753 511 155 2 21 531 17 507 0.0 673
Msa1382310 MtrunA17_Chr4g0028601 50.250 599 279 6 1 597 1 582 0.0 536
Msa1382310 MtrunA17_Chr4g0043731 47.541 549 269 7 44 590 37 568 4.67e-168 491
Msa1382310 MtrunA17_Chr1g0196761 44.444 594 301 6 11 599 4 573 2.74e-164 481
Msa1382310 MtrunA17_Chr1g0196751 45.556 540 276 4 48 586 34 556 3.25e-159 468
Msa1382310 MtrunA17_Chr8g0342341 42.124 565 300 6 46 599 27 575 5.46e-145 432
Msa1382310 MtrunA17_Chr5g0421241 54.217 83 21 2 538 604 3 84 3.63e-19 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382310 AT1G55490.5 89.085 568 48 2 37 604 46 599 0.0 999
Msa1382310 AT1G55490.1 89.085 568 48 2 37 604 46 599 0.0 999
Msa1382310 AT1G55490.3 89.085 568 48 2 37 604 46 599 0.0 999
Msa1382310 AT1G55490.4 89.085 568 48 2 37 604 46 599 0.0 999
Msa1382310 AT1G55490.2 89.085 568 48 2 37 604 46 599 0.0 999
Msa1382310 AT3G13470.1 88.204 568 53 2 37 604 42 595 0.0 995
Msa1382310 AT5G56500.2 87.719 570 55 3 37 605 42 597 0.0 987
Msa1382310 AT5G56500.1 87.719 570 55 3 37 605 42 597 0.0 987
Msa1382310 AT1G26230.1 65.188 586 190 2 13 597 4 576 0.0 776
Msa1382310 AT1G26230.4 67.293 532 161 1 66 597 6 524 0.0 740
Msa1382310 AT1G26230.3 67.614 528 158 1 70 597 2 516 0.0 738
Msa1382310 AT1G26230.2 63.410 522 177 2 13 533 4 512 0.0 667
Msa1382310 AT1G26230.5 62.611 452 155 2 13 463 4 442 0.0 569
Msa1382310 AT2G28000.1 50.909 550 252 6 37 585 37 569 4.73e-180 522
Msa1382310 AT2G33210.1 45.645 574 289 7 22 592 9 562 2.88e-164 482
Msa1382310 AT3G23990.1 44.444 585 295 6 8 591 5 560 8.96e-163 478
Msa1382310 AT2G33210.2 45.470 574 285 8 22 592 9 557 1.35e-160 472
Msa1382310 AT5G18820.1 46.034 580 287 11 18 592 7 565 3.58e-153 453
Msa1382310 AT3G13860.1 43.986 582 296 8 27 605 18 572 1.36e-152 451
Msa1382310 AT5G18820.2 46.285 471 236 6 125 592 3 459 7.94e-125 376
Msa1382310 AT5G18820.3 44.724 398 203 5 44 440 31 412 9.27e-101 313

Find 188 sgRNAs with CRISPR-Local

Find 485 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCCATGGCTGAGACTTT+AGG 0.154088 tig0020493:-121986 None:intergenic
TCCTCTGCAATTATCAAAAT+AGG 0.166829 tig0020493:-124596 None:intergenic
TGGCCATGGCTGAGACTTTA+GGG 0.222791 tig0020493:-121985 None:intergenic
AACTACTACCTCTGTTGTTT+TGG 0.233024 tig0020493:+122788 Msa1382310:CDS
TATCTTCCTAATTCGCTTAC+AGG 0.233284 tig0020493:+124858 Msa1382310:CDS
TGAGAATATTGGTGCTAAAT+TGG 0.241648 tig0020493:+122722 Msa1382310:CDS
TTTCGATGTAATACACAATT+TGG 0.242586 tig0020493:+128224 Msa1382310:three_prime_UTR
CTTGAGCTAATAATTGAAAA+AGG 0.257378 tig0020493:+128327 Msa1382310:three_prime_UTR
GCACTTAAGGCTCCTGGATT+TGG 0.266390 tig0020493:+124683 Msa1382310:CDS
ACAGTACCTGTAAGCGAATT+AGG 0.270395 tig0020493:-124864 None:intergenic
AACTATTGTGGTTGTATCTT+TGG 0.272759 tig0020493:-124964 None:intergenic
AATCTATAAATCACCTTTGT+TGG 0.276775 tig0020493:-126241 None:intergenic
GGCTAGGGTTTAAGAGGATT+TGG 0.287170 tig0020493:-121813 None:intergenic
CTCGCTTGGTAACTGCTTCT+TGG 0.288189 tig0020493:-125001 None:intergenic
GAAGTGGCGGCTGCTTAAAA+TGG 0.296002 tig0020493:+128179 Msa1382310:exon
GGTTTAAGAGGATTTGGTTT+TGG 0.307959 tig0020493:-121807 None:intergenic
AACCTCTCCGAGATTATTTC+CGG 0.312252 tig0020493:-128408 None:intergenic
TTAAGAATGTTAGTTCATTC+TGG 0.312839 tig0020493:-128608 None:intergenic
TGTGAACAAGCTTGCGGATT+TGG 0.336342 tig0020493:+122147 Msa1382310:CDS
AATGGTGGCTAGGGTTTAAG+AGG 0.350032 tig0020493:-121819 None:intergenic
ACACCATCATTAACAATCTT+AGG 0.351092 tig0020493:-122229 None:intergenic
CCTGGTGAGAGCGACGTTGC+TGG 0.360381 tig0020493:-121951 None:intergenic
TTTAGGGCTCCGATTCTTCC+TGG 0.368398 tig0020493:-121969 None:intergenic
TGGCGGTGTGGCTGTAATTC+AGG 0.378807 tig0020493:+125408 Msa1382310:CDS
CCTCTGCAATTATCAAAATA+GGG 0.385162 tig0020493:-124595 None:intergenic
TGCAGGGAATTGAGAGAAAA+TGG 0.386798 tig0020493:-121837 None:intergenic
CTGTGTTGTTGTTGAGATAA+AGG 0.387501 tig0020493:+127750 Msa1382310:CDS
TCGCTTGGTAACTGCTTCTT+GGG 0.387602 tig0020493:-125000 None:intergenic
GTTGTTCTTGAGAGCAAGTA+TGG 0.388399 tig0020493:+122202 Msa1382310:CDS
TGGTGTTACTCTTGGTCCTA+AGG 0.393067 tig0020493:+122171 Msa1382310:CDS
TTAATAAAAGTAAAATATAC+TGG 0.394422 tig0020493:-128367 None:intergenic
ACTGAAGATTGCAGCACTTA+AGG 0.394593 tig0020493:+124670 Msa1382310:CDS
TACGGATATAATGCTGCAAC+TGG 0.399922 tig0020493:+126181 Msa1382310:CDS
CTTGTTGTGAACAAACTTAG+AGG 0.403832 tig0020493:+124644 Msa1382310:CDS
TTGCATGATGCCATGGTTGC+AGG 0.405618 tig0020493:-121854 None:intergenic
ACCTCTCCGAGATTATTTCC+GGG 0.406399 tig0020493:-128407 None:intergenic
GAATGGAGGATGAAACTATT+AGG 0.407847 tig0020493:-121756 None:intergenic
AGCCGCCAAGACAAATGATT+TGG 0.408630 tig0020493:+122755 Msa1382310:CDS
GGTAACCCAATGGACAATTC+AGG 0.411976 tig0020493:+127793 Msa1382310:CDS
GGATATTGAACAAGAAGCTT+TGG 0.413311 tig0020493:+124616 Msa1382310:CDS
AAAGCTGGGAATGAGGTTCT+AGG 0.414128 tig0020493:+124918 Msa1382310:CDS
GTTGAGGAGGGTATTGTAGT+TGG 0.422734 tig0020493:+125699 Msa1382310:CDS
GATGATATTGCCATCTTGAC+AGG 0.432753 tig0020493:+124728 Msa1382310:CDS
TTAGCACCAATATTCTCAAC+TGG 0.436766 tig0020493:-122717 None:intergenic
GAGGATCCAGTTGAGAATAT+TGG 0.438153 tig0020493:+122711 Msa1382310:CDS
TTGTCCATTGGGTTACCAAC+AGG 0.439504 tig0020493:-127787 None:intergenic
TATGAAGATTTAATGTCGGC+TGG 0.440375 tig0020493:+126208 Msa1382310:CDS
GAGGGTATTGTAGTTGGCGG+TGG 0.446592 tig0020493:+125705 Msa1382310:CDS
GTTGAGTAAGGTTGGTAGAA+AGG 0.446649 tig0020493:+124264 Msa1382310:CDS
TAGAAAGTTATTTATACTCA+TGG 0.447469 tig0020493:+128437 Msa1382310:three_prime_UTR
TGGTGCTAAATTGGTTAGAC+AGG 0.448444 tig0020493:+122731 Msa1382310:CDS
CTCACTGTCTGTAACAAAGT+AGG 0.452915 tig0020493:-124374 None:intergenic
ATTGCAGCACTTAAGGCTCC+TGG 0.453971 tig0020493:+124677 Msa1382310:CDS
CTCTCAATTCCCTGCAACCA+TGG 0.454827 tig0020493:+121844 Msa1382310:exon
GGACTTAGCTTAGACAAAGC+TGG 0.456634 tig0020493:+124903 Msa1382310:CDS
CTTAATTTGTGAAACTCGCT+TGG 0.457406 tig0020493:-125015 None:intergenic
ACAAATTAAGAACCAAATTG+AGG 0.459257 tig0020493:+125028 Msa1382310:CDS
GCCTGCCAAATCATTTGTCT+TGG 0.460705 tig0020493:-122760 None:intergenic
TCTTATTGCAGAAGGTGTTA+AGG 0.461521 tig0020493:+122818 Msa1382310:CDS
TATTTATAGGAGCTCATTGT+CGG 0.463192 tig0020493:+128560 Msa1382310:intron
TTGTTGCTCGGAATTGAGAA+TGG 0.466091 tig0020493:-121773 None:intergenic
GAAAGGATTGCAAAACTGTC+TGG 0.467114 tig0020493:+125388 Msa1382310:CDS
TTTGTTGAAATACAACTCCT+TGG 0.469848 tig0020493:-122005 None:intergenic
TACATACCTGAATTGTCCAT+TGG 0.470599 tig0020493:-127799 None:intergenic
ACAGCCGTCTGTCCTACATT+TGG 0.471551 tig0020493:-128273 None:intergenic
GAAAGATTAAGTCACCTTTG+TGG 0.473592 tig0020493:-125607 None:intergenic
GGAGGATGAAACTATTAGGT+AGG 0.475875 tig0020493:-121752 None:intergenic
GAGTTGTATTTCAACAAAGA+TGG 0.475978 tig0020493:+122010 Msa1382310:CDS
TTGAGAGAAAATGGTGGCTA+GGG 0.476871 tig0020493:-121828 None:intergenic
GATTTGGTTGGTGTTACTCT+TGG 0.477460 tig0020493:+122163 Msa1382310:CDS
TTCTGCGGGCGGAAGAAGAT+GGG 0.478610 tig0020493:-121922 None:intergenic
GACTTAGCTTAGACAAAGCT+GGG 0.483882 tig0020493:+124904 Msa1382310:CDS
GATAGCTGAGGCGTTGAGTA+AGG 0.484566 tig0020493:+124252 Msa1382310:CDS
GTCTGTCCTACATTTGGACT+TGG 0.486866 tig0020493:-128267 None:intergenic
CCAGGTGGTCAGATGTTGCT+TGG 0.488161 tig0020493:+127687 Msa1382310:intron
AAAGATACAACCACAATAGT+TGG 0.489610 tig0020493:+124966 Msa1382310:CDS
GCAGGTTGAGGATAGTGAAT+TGG 0.491700 tig0020493:+124180 Msa1382310:intron
ATCAAAGGTGGATGCAATCA+AGG 0.491996 tig0020493:+125749 Msa1382310:CDS
CTTTCAGGCCGCTGTTGAGG+AGG 0.494985 tig0020493:+125686 Msa1382310:intron
GTTAATAAGATCCCTTGCAT+TGG 0.496312 tig0020493:-124543 None:intergenic
TGGCAATATCATCAAGGTAC+TGG 0.496736 tig0020493:-124718 None:intergenic
CTCTTGCGTTCTCCAAATCC+AGG 0.496984 tig0020493:-124695 None:intergenic
ACTCTAAACACACACCTCTC+TGG 0.499764 tig0020493:-122260 None:intergenic
TGCCAAATCATTTGTCTTGG+CGG 0.501395 tig0020493:-122757 None:intergenic
TCGCTCTCACCAGGAAGAAT+CGG 0.502728 tig0020493:+121960 Msa1382310:CDS
TTACTTTCAGGCCGCTGTTG+AGG 0.503371 tig0020493:+125683 Msa1382310:intron
AGAAGATGGGAATGAAGAAA+TGG 0.505552 tig0020493:-121909 None:intergenic
ACATACCTGAATTGTCCATT+GGG 0.507022 tig0020493:-127798 None:intergenic
GGTGTTACTCTTGGTCCTAA+GGG 0.507915 tig0020493:+122172 Msa1382310:CDS
TTTGCTCAGACTTGCATCAA+AGG 0.510939 tig0020493:+125734 Msa1382310:CDS
TGCAGAACAAGATTATGAAA+AGG 0.511288 tig0020493:+125354 Msa1382310:CDS
AGGGTATTGTAGTTGGCGGT+GGG 0.514410 tig0020493:+125706 Msa1382310:CDS
GCTCAGGGTCTTATTGCAGA+AGG 0.514992 tig0020493:+122810 Msa1382310:CDS
TTACCAACAGGTGCAGCCTC+AGG 0.516329 tig0020493:-127775 None:intergenic
TTGAGTAAGGTTGGTAGAAA+GGG 0.519613 tig0020493:+124265 Msa1382310:CDS
AAGTGGCGGCTGCTTAAAAT+GGG 0.519821 tig0020493:+128180 Msa1382310:three_prime_UTR
GAGGATGAAACTATTAGGTA+GGG 0.520347 tig0020493:-121751 None:intergenic
ACAAATGATTTGGCAGGCGA+TGG 0.521838 tig0020493:+122765 Msa1382310:CDS
AGAAAGTTATTTATACTCAT+GGG 0.522148 tig0020493:+128438 Msa1382310:three_prime_UTR
TCCGTATCTCGTATTGTCGT+TGG 0.522553 tig0020493:-126164 None:intergenic
TCTCCTAAGATTGTTAATGA+TGG 0.522934 tig0020493:+122226 Msa1382310:CDS
ATTGAGAGAAAATGGTGGCT+AGG 0.523158 tig0020493:-121829 None:intergenic
CTTAGACAAAGCTGGGAATG+AGG 0.523660 tig0020493:+124911 Msa1382310:CDS
TCACTGTCTGTAACAAAGTA+GGG 0.525001 tig0020493:-124373 None:intergenic
GGTTCTAGGCACTGCGGCCA+AGG 0.525331 tig0020493:+124932 Msa1382310:CDS
TTTCTGCGGGCGGAAGAAGA+TGG 0.527764 tig0020493:-121923 None:intergenic
CCAGCAACGTCGCTCTCACC+AGG 0.531654 tig0020493:+121951 Msa1382310:CDS
GCCAAGACAAATGATTTGGC+AGG 0.531683 tig0020493:+122759 Msa1382310:CDS
ATCTTTGGTGAGCACCACCT+TGG 0.533468 tig0020493:-124949 None:intergenic
AGAACAACATTCCTTCCCTT+AGG 0.535555 tig0020493:-122187 None:intergenic
ATACCACGTGTGATAAGCAC+AGG 0.537355 tig0020493:-122970 None:intergenic
GATGTGGCAGCAGTTAGTGC+AGG 0.549028 tig0020493:+124205 Msa1382310:CDS
TTATAAACCTCCTGTCAAGA+TGG 0.550939 tig0020493:-124738 None:intergenic
AAATGGCAGCGGAGGAAGAG+AGG 0.551209 tig0020493:-121892 None:intergenic
ACTTCCATCACCAACTATTG+TGG 0.557957 tig0020493:-124976 None:intergenic
CTAGAGGACGCAATTAGAAA+CGG 0.558599 tig0020493:+124569 Msa1382310:CDS
GAGGAGGGTATTGTAGTTGG+CGG 0.560061 tig0020493:+125702 Msa1382310:CDS
AAAAGGAGAAGCTGAACGAA+AGG 0.560321 tig0020493:+125371 Msa1382310:CDS
TCCAACGACAATACGAGATA+CGG 0.561582 tig0020493:+126163 Msa1382310:CDS
AAGAGAGGTTGCATGAGGAG+AGG 0.563023 tig0020493:-121877 None:intergenic
TTTCAGGCCGCTGTTGAGGA+GGG 0.565478 tig0020493:+125687 Msa1382310:intron
ATGAAGATTTAATGTCGGCT+GGG 0.566175 tig0020493:+126209 Msa1382310:CDS
AAACAATCTGTATGTTGTTG+AGG 0.570389 tig0020493:+124321 Msa1382310:CDS
AACAATCTGTATGTTGTTGA+GGG 0.571719 tig0020493:+124322 Msa1382310:CDS
GAACCTGAGGCTGCACCTGT+TGG 0.571946 tig0020493:+127772 Msa1382310:CDS
AAAATATGAAGATTTAATGT+CGG 0.572459 tig0020493:+126204 Msa1382310:CDS
ACTTAAACTAATGTCAAAAG+AGG 0.575994 tig0020493:+123023 Msa1382310:CDS
AACAAGCTTGCGGATTTGGT+TGG 0.576745 tig0020493:+122151 Msa1382310:CDS
TTCCGCTATCAAGAAACTCC+AGG 0.579355 tig0020493:+122033 Msa1382310:CDS
TGCAAAACTGTCTGGCGGTG+TGG 0.580627 tig0020493:+125396 Msa1382310:CDS
GCTGAGGCGTTGAGTAAGGT+TGG 0.581310 tig0020493:+124256 Msa1382310:CDS
TGGCAGTGTTGTTAGTGAGA+AGG 0.588442 tig0020493:+126052 Msa1382310:CDS
TAAAGTCTCAGCCATGGCCA+AGG 0.591758 tig0020493:+121988 Msa1382310:CDS
TCTAGGCACTGCGGCCAAGG+TGG 0.592690 tig0020493:+124935 Msa1382310:CDS
CGTGTTCCCGGAAATAATCT+CGG 0.593184 tig0020493:+128401 Msa1382310:three_prime_UTR
TTACTCTTGGTCCTAAGGGA+AGG 0.596314 tig0020493:+122176 Msa1382310:CDS
ACAACCACAATAGTTGGTGA+TGG 0.599514 tig0020493:+124972 Msa1382310:CDS
GCAGGGAACAATCATGAGGT+AGG 0.602361 tig0020493:+124223 Msa1382310:CDS
TAGGATTCGGCATGTAGAAG+TGG 0.603770 tig0020493:+128163 Msa1382310:intron
CACCTGGAGTTTCTTGATAG+CGG 0.605493 tig0020493:-122035 None:intergenic
TCAAGATGGCAATATCATCA+AGG 0.606055 tig0020493:-124724 None:intergenic
TCGTGACACTTGAGGAGGGA+AGG 0.606314 tig0020493:+124290 Msa1382310:CDS
AGGATGAAACTATTAGGTAG+GGG 0.606720 tig0020493:-121750 None:intergenic
GTAGGACCAAGTCCAAATGT+AGG 0.607962 tig0020493:+128261 Msa1382310:three_prime_UTR
GCTCAGACTTGCATCAAAGG+TGG 0.608186 tig0020493:+125737 Msa1382310:CDS
GATATTGCCATCTTGACAGG+AGG 0.609386 tig0020493:+124731 Msa1382310:CDS
GAAATACAACTCCTTGGCCA+TGG 0.609599 tig0020493:-121999 None:intergenic
TGCATGATGCCATGGTTGCA+GGG 0.611540 tig0020493:-121853 None:intergenic
GGAAAAGAAATTGAGAGTTG+AGG 0.612753 tig0020493:+125572 Msa1382310:CDS
CTTGCAGTTCTCAAATTCAA+CGG 0.614107 tig0020493:-124404 None:intergenic
AATGTTAGTTCATTCTGGTG+AGG 0.617715 tig0020493:-128603 None:intergenic
ACAAACTGAGACAGAACTCA+AGG 0.620054 tig0020493:+125551 Msa1382310:CDS
ACTGTTATCAGAGAGGAGGT+TGG 0.622682 tig0020493:+124882 Msa1382310:CDS
GAATGAAGAAATGGCAGCGG+AGG 0.629838 tig0020493:-121900 None:intergenic
TGGGAATGAAGAAATGGCAG+CGG 0.632892 tig0020493:-121903 None:intergenic
AAGTCCAAATGTAGGACAGA+CGG 0.633215 tig0020493:+128269 Msa1382310:three_prime_UTR
GGATAGTGAATTGGCTGATG+TGG 0.636323 tig0020493:+124189 Msa1382310:CDS
GATTCGGCATGTAGAAGTGG+CGG 0.643547 tig0020493:+128166 Msa1382310:exon
GAGCCCTAAAGTCTCAGCCA+TGG 0.644700 tig0020493:+121982 Msa1382310:CDS
TACAATACCCTCCTCAACAG+CGG 0.645508 tig0020493:-125694 None:intergenic
AACCCTGTGCTTATCACACG+TGG 0.648183 tig0020493:+122967 Msa1382310:CDS
AGGTACTGTTATCAGAGAGG+AGG 0.651028 tig0020493:+124878 Msa1382310:CDS
TGCACCTGTTGGTAACCCAA+TGG 0.655339 tig0020493:+127783 Msa1382310:CDS
GGGTGTCGTGACACTTGAGG+AGG 0.655940 tig0020493:+124285 Msa1382310:CDS
GGAGGAAGAGAGGTTGCATG+AGG 0.656006 tig0020493:-121882 None:intergenic
GGAGAGGTTGCATGATGCCA+TGG 0.657034 tig0020493:-121861 None:intergenic
GAGGGCATGCAATTTGATCG+AGG 0.658220 tig0020493:+124340 Msa1382310:CDS
ATGTGGCAGCAGTTAGTGCA+GGG 0.658714 tig0020493:+124206 Msa1382310:CDS
AAAGGGTGTCGTGACACTTG+AGG 0.659317 tig0020493:+124282 Msa1382310:CDS
GGTGAGAGCGACGTTGCTGG+TGG 0.659437 tig0020493:-121948 None:intergenic
GGTGTCGTGACACTTGAGGA+GGG 0.659758 tig0020493:+124286 Msa1382310:CDS
GAATGGTGTGAACAAGCTTG+CGG 0.665076 tig0020493:+122141 Msa1382310:intron
GGATCTTATTAACATACTAG+AGG 0.670020 tig0020493:+124553 Msa1382310:CDS
TGGTGTCACTGTTGCCAGAG+AGG 0.672652 tig0020493:+122246 Msa1382310:CDS
TTGCTCGGAATTGAGAATGG+AGG 0.673266 tig0020493:-121770 None:intergenic
TGGGATCATTGATCCAACAA+AGG 0.675402 tig0020493:+126228 Msa1382310:CDS
AGGATTGCAAAACTGTCTGG+CGG 0.685391 tig0020493:+125391 Msa1382310:CDS
GGTAGGAAATATGATAGCTG+AGG 0.689740 tig0020493:+124240 Msa1382310:CDS
GGACGCTCTTAATGCCACAA+AGG 0.695512 tig0020493:+125593 Msa1382310:CDS
CGTTGAATTTGAGAACTGCA+AGG 0.697779 tig0020493:+124405 Msa1382310:CDS
TACAGGTACTGTTATCAGAG+AGG 0.700067 tig0020493:+124875 Msa1382310:CDS
TAGTGCAGGGAACAATCATG+AGG 0.700989 tig0020493:+124219 Msa1382310:CDS
TGTTGAGATAAAGGAACCTG+AGG 0.713419 tig0020493:+127759 Msa1382310:CDS
TCCCGGAAATAATCTCGGAG+AGG 0.721232 tig0020493:+128406 Msa1382310:three_prime_UTR
ACCCTGAGCCAAAACAACAG+AGG 0.733850 tig0020493:-122796 None:intergenic
TACCACGTGTGATAAGCACA+GGG 0.740125 tig0020493:-122969 None:intergenic
AGGGAATTGAGAGAAAATGG+TGG 0.761398 tig0020493:-121834 None:intergenic
GAATGAGGTTCTAGGCACTG+CGG 0.821029 tig0020493:+124926 Msa1382310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAAAAAAGAAAAAAAAAA+AGG - tig0020493:123647-123666 None:intergenic 10.0%
!!! ATAAATATATTTTTGAATAG+GGG - tig0020493:126725-126744 None:intergenic 10.0%
!!! GTATAAATATATTTTTGAAT+AGG - tig0020493:126727-126746 None:intergenic 10.0%
!!! AAAACTATGATTTTAAATAT+TGG + tig0020493:128083-128102 Msa1382310:intron 10.0%
!!! AAACTATGATTTTAAATATT+GGG + tig0020493:128084-128103 Msa1382310:intron 10.0%
!! TTAATAAAAGTAAAATATAC+TGG - tig0020493:128370-128389 None:intergenic 10.0%
!!! TTTACTTGAATTATTGTTTT+TGG + tig0020493:122468-122487 Msa1382310:intron 15.0%
!!! TTTACTTGAATTATTGTTTT+AGG + tig0020493:122468-122487 Msa1382310:intron 15.0%
!!! TTTTTAGTGAATTAATAATG+TGG + tig0020493:122638-122657 Msa1382310:intron 15.0%
!!! TTTTAGTGAATTAATAATGT+GGG + tig0020493:122639-122658 Msa1382310:intron 15.0%
!!! AGAGTGAAATTTTATTTTAT+AGG + tig0020493:122927-122946 Msa1382310:intron 15.0%
!!! AAAAAAAAAAAAACTGACTT+TGG - tig0020493:123547-123566 None:intergenic 15.0%
!!! TTCTTTTTTATGAATTGAAA+TGG + tig0020493:123655-123674 Msa1382310:intron 15.0%
!!! GTTTTTGTAAATAAATAGTT+AGG + tig0020493:123868-123887 Msa1382310:intron 15.0%
!!! GTTTTTTTAGATTGATTAAT+TGG + tig0020493:123890-123909 Msa1382310:intron 15.0%
!! ACTATTAATGTAAAAAACAT+AGG - tig0020493:124064-124083 None:intergenic 15.0%
!!! TTAAAAAATGCGAAATATTT+TGG + tig0020493:125153-125172 Msa1382310:intron 15.0%
!! ATAACTTTATAATTAAAACG+TGG + tig0020493:125953-125972 Msa1382310:intron 15.0%
!! AAAATATGAAGATTTAATGT+CGG + tig0020493:126204-126223 Msa1382310:CDS 15.0%
!! AATTTCCTTAAAAAAAATTG+TGG + tig0020493:126859-126878 Msa1382310:intron 15.0%
!! TCCATTATTAATTAATAACA+CGG - tig0020493:127852-127871 None:intergenic 15.0%
!!! AATAAACAATGGTATTTTTT+TGG - tig0020493:128005-128024 None:intergenic 15.0%
!! TATTGAAAAAGATATACAAA+AGG + tig0020493:128470-128489 Msa1382310:intron 15.0%
!!! TTCACTTGAATTATTGTTTT+TGG + tig0020493:122290-122309 Msa1382310:intron 20.0%
!!! TTTTTAGTGAATTAGTTATG+TGG + tig0020493:122366-122385 Msa1382310:intron 20.0%
!!! TTTTAGTGAATTAGTTATGT+GGG + tig0020493:122367-122386 Msa1382310:intron 20.0%
!!! TTCACTTGAATTATTGTTTT+TGG + tig0020493:122290-122309 Msa1382310:intron 20.0%
!!! TATTTATTTTGTCTGAGTTT+AGG + tig0020493:122436-122455 Msa1382310:intron 20.0%
!!! ATTTATTTTGTCTGAGTTTA+GGG + tig0020493:122437-122456 Msa1382310:intron 20.0%
!! TTTAGTGAATTAATAATGTG+GGG + tig0020493:122640-122659 Msa1382310:intron 20.0%
!!! TAAAATTTCACTCTAAAATG+AGG - tig0020493:122921-122940 None:intergenic 20.0%
!!! ATTTTTATTACACGTGTTAT+GGG + tig0020493:123083-123102 Msa1382310:intron 20.0%
!! AAGCAAAGGAAAAAAAAAAT+TGG - tig0020493:123312-123331 None:intergenic 20.0%
!!! TTTTTTTCTCAATTAGATGT+AGG + tig0020493:123456-123475 Msa1382310:intron 20.0%
!!! TTTTTTCTCAATTAGATGTA+GGG + tig0020493:123457-123476 Msa1382310:intron 20.0%
!!! AAAAAATTAGCCTTCAATTA+TGG + tig0020493:123687-123706 Msa1382310:intron 20.0%
!!! AAAAATTAGCCTTCAATTAT+GGG + tig0020493:123688-123707 Msa1382310:intron 20.0%
!! AGTTTAAATGAAAAAGATGA+GGG - tig0020493:124135-124154 None:intergenic 20.0%
!! AAGTTTAAATGAAAAAGATG+AGG - tig0020493:124136-124155 None:intergenic 20.0%
!! AAAAAAAGTCTACATTATAC+AGG + tig0020493:125281-125300 Msa1382310:intron 20.0%
!! AAAATGTCTACATATTCTAT+AGG + tig0020493:125330-125349 Msa1382310:intron 20.0%
!! AAAAATATCTCCATATAAAG+GGG - tig0020493:125846-125865 None:intergenic 20.0%
!! GAAAAATATCTCCATATAAA+GGG - tig0020493:125847-125866 None:intergenic 20.0%
!!! TTTTTGCTATTAATTTCAGA+GGG - tig0020493:126019-126038 None:intergenic 20.0%
!!! TTTTTTGCTATTAATTTCAG+AGG - tig0020493:126020-126039 None:intergenic 20.0%
!! AAATTAATAGCAAAAAATGC+TGG + tig0020493:126023-126042 Msa1382310:CDS 20.0%
!!! AACTTATGTAACTTGTATAT+TGG + tig0020493:126131-126150 Msa1382310:intron 20.0%
!!! TAAATTAAACTTAGCTTGTA+GGG + tig0020493:126335-126354 Msa1382310:intron 20.0%
!!! CATTATAAATGGTTTGTATA+TGG + tig0020493:126365-126384 Msa1382310:intron 20.0%
!!! CTTGTGTTTTGATTAAATTT+TGG + tig0020493:126392-126411 Msa1382310:intron 20.0%
!! TTCCTTAGAAAAATTGTATT+TGG + tig0020493:126473-126492 Msa1382310:intron 20.0%
!!! TTTTAAAAACTGACAATAAG+AGG - tig0020493:126789-126808 None:intergenic 20.0%
!!! TACATCCACAATTTTTTTTA+AGG - tig0020493:126867-126886 None:intergenic 20.0%
!! TATAATATCATCATCACATT+CGG + tig0020493:127016-127035 Msa1382310:intron 20.0%
!!! TAAGCAAAAATTCACTTTTT+AGG - tig0020493:127158-127177 None:intergenic 20.0%
!! ACTAGAACATAAAATAAATC+AGG - tig0020493:127489-127508 None:intergenic 20.0%
!!! ACCGTGTTATTAATTAATAA+TGG + tig0020493:127848-127867 Msa1382310:intron 20.0%
!! TAGAAAGTTATTTATACTCA+TGG + tig0020493:128437-128456 Msa1382310:three_prime_UTR 20.0%
!! AGAAAGTTATTTATACTCAT+GGG + tig0020493:128438-128457 Msa1382310:three_prime_UTR 20.0%
!! ATACACTTATTCTACTTATA+GGG + tig0020493:128495-128514 Msa1382310:intron 20.0%
!! GATACAATTGTACTATTTAT+AGG + tig0020493:128547-128566 Msa1382310:intron 20.0%
!!! TTTGTGTTTTTGTTACAGAA+TGG + tig0020493:122124-122143 Msa1382310:intron 25.0%
! TTTAGTGAATTAGTTATGTG+GGG + tig0020493:122368-122387 Msa1382310:intron 25.0%
!!! TTTTTGGTGAATTAGTTATG+TGG + tig0020493:122484-122503 Msa1382310:intron 25.0%
!! TTTTGGTGAATTAGTTATGT+GGG + tig0020493:122485-122504 Msa1382310:intron 25.0%
!!! TTTTAGGTGAATTAGTTATG+TGG + tig0020493:122561-122580 Msa1382310:intron 25.0%
! TGTTTACATTTGCGTTAAAA+AGG + tig0020493:122680-122699 Msa1382310:intron 25.0%
! TAAGTAACTAATAATGTGCT+TGG + tig0020493:122864-122883 Msa1382310:intron 25.0%
! ACTTAAACTAATGTCAAAAG+AGG + tig0020493:123023-123042 Msa1382310:CDS 25.0%
!! CATTTTTATTACACGTGTTA+TGG + tig0020493:123082-123101 Msa1382310:intron 25.0%
! TGAAGAAATGATAATCAATG+AGG + tig0020493:123382-123401 Msa1382310:intron 25.0%
! GAAGAAATGATAATCAATGA+GGG + tig0020493:123383-123402 Msa1382310:intron 25.0%
! AAGAAATGATAATCAATGAG+GGG + tig0020493:123384-123403 Msa1382310:intron 25.0%
!! TTTTTCTCAATTAGATGTAG+GGG + tig0020493:123458-123477 Msa1382310:intron 25.0%
! CATGAACTAAACCAAATTTA+TGG + tig0020493:123492-123511 Msa1382310:intron 25.0%
! ACTAAACCAAATTTATGGTT+CGG + tig0020493:123497-123516 Msa1382310:intron 25.0%
!! TTTTATAAACCCGTTCAATT+TGG + tig0020493:123579-123598 Msa1382310:intron 25.0%
! TAATTTCAACCCATAATTGA+AGG - tig0020493:123700-123719 None:intergenic 25.0%
! CAGATTTGTAAATTATGAAG+TGG + tig0020493:123728-123747 Msa1382310:intron 25.0%
!! TTTATTGTTTCTCAAAACTG+GGG - tig0020493:123811-123830 None:intergenic 25.0%
!! GTTTATTGTTTCTCAAAACT+GGG - tig0020493:123812-123831 None:intergenic 25.0%
! TATACAAGTGCATCTAAATA+GGG - tig0020493:123957-123976 None:intergenic 25.0%
! ATATACAAGTGCATCTAAAT+AGG - tig0020493:123958-123977 None:intergenic 25.0%
! ATTTAAACTTAGAAGAGTTG+TGG + tig0020493:124146-124165 Msa1382310:intron 25.0%
! TGGCAAAGATAATAATAAGT+TGG - tig0020493:124453-124472 None:intergenic 25.0%
!! TAAGTAAAAACACAAGTTGA+TGG - tig0020493:124473-124492 None:intergenic 25.0%
! TAAACCAAAAAAGGAACAAA+GGG - tig0020493:124820-124839 None:intergenic 25.0%
! ACAAATTAAGAACCAAATTG+AGG + tig0020493:125028-125047 Msa1382310:CDS 25.0%
! TTACTTATTCTTCATGTACA+AGG - tig0020493:125125-125144 None:intergenic 25.0%
!! TTTTTCTTCATCATTTGCAA+GGG - tig0020493:125778-125797 None:intergenic 25.0%
! AAAATATCTCCATATAAAGG+GGG - tig0020493:125845-125864 None:intergenic 25.0%
! CGAAAAATATCTCCATATAA+AGG - tig0020493:125848-125867 None:intergenic 25.0%
!! ATGGAGATATTTTTCGTTTT+AGG + tig0020493:125852-125871 Msa1382310:intron 25.0%
! TATAAAGTTATAATCAGCGT+CGG - tig0020493:125944-125963 None:intergenic 25.0%
!! TAGTGAGAAGGTATAAAAAT+CGG + tig0020493:126064-126083 Msa1382310:intron 25.0%
! GTATAAAAATCGGCTAAATT+TGG + tig0020493:126074-126093 Msa1382310:intron 25.0%
!! TATGTAACTTGTATATTGGT+AGG + tig0020493:126135-126154 Msa1382310:intron 25.0%
! AATCTATAAATCACCTTTGT+TGG - tig0020493:126244-126263 None:intergenic 25.0%
!!! GTAAATTAAACTTAGCTTGT+AGG + tig0020493:126334-126353 Msa1382310:intron 25.0%
! ACAAACCATTTATAATGATG+CGG - tig0020493:126362-126381 None:intergenic 25.0%
!! CTCCAAATACAATTTTTCTA+AGG - tig0020493:126478-126497 None:intergenic 25.0%
! CTTAGAAAAATTGTATTTGG+AGG + tig0020493:126476-126495 Msa1382310:intron 25.0%
! GAAATTATGAAGAGAGAAAT+AGG + tig0020493:126570-126589 Msa1382310:intron 25.0%
!!! AGTAGATTTGAAGTATTGTT+TGG + tig0020493:126633-126652 Msa1382310:intron 25.0%
! CTGTGTAATTCGTATATTAA+TGG - tig0020493:126944-126963 None:intergenic 25.0%
! TGTTTGCTTATATTTGTGAT+CGG - tig0020493:127059-127078 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + tig0020493:127094-127113 Msa1382310:intron 25.0%
! CATTGAATAAATGATGTATG+TGG - tig0020493:127133-127152 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG + tig0020493:127168-127187 Msa1382310:intron 25.0%
! ATGTATAAGAAATGAAAGCA+AGG + tig0020493:127240-127259 Msa1382310:intron 25.0%
! TGTATAAGAAATGAAAGCAA+GGG + tig0020493:127241-127260 Msa1382310:intron 25.0%
! AAACAAACAGACTATTAATG+TGG + tig0020493:127454-127473 Msa1382310:intron 25.0%
! AACAAACAGACTATTAATGT+GGG + tig0020493:127455-127474 Msa1382310:intron 25.0%
!!! TATGTTCTAGTTTCTTGATT+AGG + tig0020493:127498-127517 Msa1382310:intron 25.0%
!!! ATGTTCTAGTTTCTTGATTA+GGG + tig0020493:127499-127518 Msa1382310:intron 25.0%
! ATTCTATGACGATTCTTAAA+AGG + tig0020493:127540-127559 Msa1382310:intron 25.0%
! AGAGTAATAGGAATAAACAA+TGG - tig0020493:128016-128035 None:intergenic 25.0%
! CCTTAAAATTCAAGATTCTT+AGG - tig0020493:128061-128080 None:intergenic 25.0%
!! CCTAAGAATCTTGAATTTTA+AGG + tig0020493:128058-128077 Msa1382310:intron 25.0%
!! ATCTTTTTGTAAAACGTTGT+TGG + tig0020493:128117-128136 Msa1382310:intron 25.0%
! TATTACATCGAAAAAATAGG+AGG - tig0020493:128217-128236 None:intergenic 25.0%
! GTGTATTACATCGAAAAAAT+AGG - tig0020493:128220-128239 None:intergenic 25.0%
! TTTCGATGTAATACACAATT+TGG + tig0020493:128224-128243 Msa1382310:three_prime_UTR 25.0%
!!! TTGGTAGCTATTTTATTTGT+AGG + tig0020493:128243-128262 Msa1382310:three_prime_UTR 25.0%
! CTTGAGCTAATAATTGAAAA+AGG + tig0020493:128327-128346 Msa1382310:three_prime_UTR 25.0%
! GATACACTTATTCTACTTAT+AGG + tig0020493:128494-128513 Msa1382310:intron 25.0%
! TTAAGAATGTTAGTTCATTC+TGG - tig0020493:128611-128630 None:intergenic 25.0%
! GATAAGTTTTCTTTGTTGCT+CGG - tig0020493:121788-121807 None:intergenic 30.0%
TTTGTTGAAATACAACTCCT+TGG - tig0020493:122008-122027 None:intergenic 30.0%
GAGTTGTATTTCAACAAAGA+TGG + tig0020493:122010-122029 Msa1382310:CDS 30.0%
!!! TTCGTTTTTTGAGCATGATT+GGG - tig0020493:122068-122087 None:intergenic 30.0%
!!! TTTCGTTTTTTGAGCATGAT+TGG - tig0020493:122069-122088 None:intergenic 30.0%
TCTCCTAAGATTGTTAATGA+TGG + tig0020493:122226-122245 Msa1382310:CDS 30.0%
ACACCATCATTAACAATCTT+AGG - tig0020493:122232-122251 None:intergenic 30.0%
TTTGGTGAATTAGTTATGTG+GGG + tig0020493:122486-122505 Msa1382310:intron 30.0%
TTACATTTGCGTTAAAAAGG+TGG + tig0020493:122683-122702 Msa1382310:intron 30.0%
!! TGAGAATATTGGTGCTAAAT+TGG + tig0020493:122722-122741 Msa1382310:CDS 30.0%
AACTAATAATGTGCTTGGTT+TGG + tig0020493:122869-122888 Msa1382310:intron 30.0%
!! TTTGCTTGTTGTTACATGAT+TGG + tig0020493:122893-122912 Msa1382310:intron 30.0%
!! TTGCTTGTTGTTACATGATT+GGG + tig0020493:122894-122913 Msa1382310:intron 30.0%
! GATTTTGAACCAAATTGAAC+GGG - tig0020493:123591-123610 None:intergenic 30.0%
! CGATTTTGAACCAAATTGAA+CGG - tig0020493:123592-123611 None:intergenic 30.0%
! CGTTCAATTTGGTTCAAAAT+CGG + tig0020493:123590-123609 Msa1382310:intron 30.0%
AATCATATGAATAGCAGAAG+AGG + tig0020493:123761-123780 Msa1382310:intron 30.0%
ATCATATGAATAGCAGAAGA+GGG + tig0020493:123762-123781 Msa1382310:intron 30.0%
! GGTTTATTGTTTCTCAAAAC+TGG - tig0020493:123813-123832 None:intergenic 30.0%
AAGTTATAGTTCATGTGAAC+CGG + tig0020493:123918-123937 Msa1382310:intron 30.0%
ATACAAGTGCATCTAAATAG+GGG - tig0020493:123956-123975 None:intergenic 30.0%
AAACAATCTGTATGTTGTTG+AGG + tig0020493:124321-124340 Msa1382310:CDS 30.0%
AACAATCTGTATGTTGTTGA+GGG + tig0020493:124322-124341 Msa1382310:CDS 30.0%
ACAAAAAGATATCCAATGCA+AGG + tig0020493:124531-124550 Msa1382310:CDS 30.0%
CAAAAAGATATCCAATGCAA+GGG + tig0020493:124532-124551 Msa1382310:CDS 30.0%
GGATCTTATTAACATACTAG+AGG + tig0020493:124553-124572 Msa1382310:CDS 30.0%
CCTCTGCAATTATCAAAATA+GGG - tig0020493:124598-124617 None:intergenic 30.0%
TCCTCTGCAATTATCAAAAT+AGG - tig0020493:124599-124618 None:intergenic 30.0%
CTAAACCAAAAAAGGAACAA+AGG - tig0020493:124821-124840 None:intergenic 30.0%
AACTATTGTGGTTGTATCTT+TGG - tig0020493:124967-124986 None:intergenic 30.0%
AAAGATACAACCACAATAGT+TGG + tig0020493:124966-124985 Msa1382310:CDS 30.0%
TGCCATGCAAACAATATTTA+GGG - tig0020493:125086-125105 None:intergenic 30.0%
ATGCCATGCAAACAATATTT+AGG - tig0020493:125087-125106 None:intergenic 30.0%
TGCAGAACAAGATTATGAAA+AGG + tig0020493:125354-125373 Msa1382310:CDS 30.0%
!! TTGTGTTTTGTTACGAGTAT+AGG + tig0020493:125521-125540 Msa1382310:intron 30.0%
AAACTATGAGCTTATAGAAC+TGG - tig0020493:125661-125680 None:intergenic 30.0%
CTCATAGTTTCTTTACTTTC+AGG + tig0020493:125671-125690 Msa1382310:intron 30.0%
! CTTTTTCTTCATCATTTGCA+AGG - tig0020493:125779-125798 None:intergenic 30.0%
!!! GTTTTTTTTCCCCCTTTATA+TGG + tig0020493:125833-125852 Msa1382310:intron 30.0%
ACAAGTCAATAACACTTTCA+AGG - tig0020493:125879-125898 None:intergenic 30.0%
CAAACCATTTATAATGATGC+GGG - tig0020493:126361-126380 None:intergenic 30.0%
CATGATTTAAGAACCTCATT+TGG - tig0020493:126425-126444 None:intergenic 30.0%
AATTGTATTTGGAGGATGTT+AGG + tig0020493:126484-126503 Msa1382310:intron 30.0%
AAGAGAAGAAGAAGAGAAAT+AGG + tig0020493:126659-126678 Msa1382310:intron 30.0%
AATGCTCAATTTCTTCAGTT+TGG - tig0020493:127388-127407 None:intergenic 30.0%
AGTTTCTTGATTAGGGAAAT+TGG + tig0020493:127506-127525 Msa1382310:intron 30.0%
GTTTCTTGATTAGGGAAATT+GGG + tig0020493:127507-127526 Msa1382310:intron 30.0%
TTTCTTGATTAGGGAAATTG+GGG + tig0020493:127508-127527 Msa1382310:intron 30.0%
! TATAGGGAATCGTTTTGTAA+AGG + tig0020493:128511-128530 Msa1382310:intron 30.0%
TATTTATAGGAGCTCATTGT+CGG + tig0020493:128560-128579 Msa1382310:intron 30.0%
AGGATGAAACTATTAGGTAG+GGG - tig0020493:121753-121772 None:intergenic 35.0%
GAGGATGAAACTATTAGGTA+GGG - tig0020493:121754-121773 None:intergenic 35.0%
GAATGGAGGATGAAACTATT+AGG - tig0020493:121759-121778 None:intergenic 35.0%
!! GGTTTAAGAGGATTTGGTTT+TGG - tig0020493:121810-121829 None:intergenic 35.0%
AGAAGATGGGAATGAAGAAA+TGG - tig0020493:121912-121931 None:intergenic 35.0%
TGTTTAATTCGTCCGAGTTT+AGG + tig0020493:122318-122337 Msa1382310:intron 35.0%
GTTTAATTCGTCCGAGTTTA+GGG + tig0020493:122319-122338 Msa1382310:intron 35.0%
AAAATCCTTGACCCTAAACT+CGG - tig0020493:122333-122352 None:intergenic 35.0%
! ATTAGTTATGTGGGGTGTTT+AGG + tig0020493:122376-122395 Msa1382310:intron 35.0%
! TTAGTTATGTGGGGTGTTTA+GGG + tig0020493:122377-122396 Msa1382310:intron 35.0%
!!! TGGAGTGTTTGTTTTGATGT+TGG + tig0020493:122581-122600 Msa1382310:intron 35.0%
!!! GGAGTGTTTGTTTTGATGTT+GGG + tig0020493:122582-122601 Msa1382310:intron 35.0%
!!! TGTTTTGATGTTGGGTGTTT+AGG + tig0020493:122590-122609 Msa1382310:intron 35.0%
!! GTTTTGATGTTGGGTGTTTA+GGG + tig0020493:122591-122610 Msa1382310:intron 35.0%
TTAGCACCAATATTCTCAAC+TGG - tig0020493:122720-122739 None:intergenic 35.0%
!! AACTACTACCTCTGTTGTTT+TGG + tig0020493:122788-122807 Msa1382310:CDS 35.0%
!! TCTTATTGCAGAAGGTGTTA+AGG + tig0020493:122818-122837 Msa1382310:CDS 35.0%
!!! GGTAGACTTGTTATGAGTTT+TGG + tig0020493:122839-122858 Msa1382310:intron 35.0%
!! TGCTTGTTGTTACATGATTG+GGG + tig0020493:122895-122914 Msa1382310:intron 35.0%
! ATTTTATAGGTTGTTGCAGC+TGG + tig0020493:122940-122959 Msa1382310:intron 35.0%
!!! TCCCACTTTTTTGCTTATTC+TGG + tig0020493:123117-123136 Msa1382310:intron 35.0%
GCCAGAATAAGCAAAAAAGT+GGG - tig0020493:123121-123140 None:intergenic 35.0%
GTTAAGCAATGTAATCCCAA+AGG - tig0020493:123192-123211 None:intergenic 35.0%
TATGAAACACGAACACCTTT+GGG + tig0020493:123222-123241 Msa1382310:intron 35.0%
ACTGAACCGAACCATAAATT+TGG - tig0020493:123506-123525 None:intergenic 35.0%
TTGGTTCAAAATCGGTGAAT+TGG + tig0020493:123598-123617 Msa1382310:intron 35.0%
TCATATGAATAGCAGAAGAG+GGG + tig0020493:123763-123782 Msa1382310:intron 35.0%
!! TTGAGTAAGGTTGGTAGAAA+GGG + tig0020493:124265-124284 Msa1382310:CDS 35.0%
TCACTGTCTGTAACAAAGTA+GGG - tig0020493:124376-124395 None:intergenic 35.0%
CTTGCAGTTCTCAAATTCAA+CGG - tig0020493:124407-124426 None:intergenic 35.0%
GTTAATAAGATCCCTTGCAT+TGG - tig0020493:124546-124565 None:intergenic 35.0%
!!! CCCTATTTTGATAATTGCAG+AGG + tig0020493:124595-124614 Msa1382310:CDS 35.0%
GGATATTGAACAAGAAGCTT+TGG + tig0020493:124616-124635 Msa1382310:CDS 35.0%
! CTTGTTGTGAACAAACTTAG+AGG + tig0020493:124644-124663 Msa1382310:CDS 35.0%
TCAAGATGGCAATATCATCA+AGG - tig0020493:124727-124746 None:intergenic 35.0%
TTATAAACCTCCTGTCAAGA+TGG - tig0020493:124741-124760 None:intergenic 35.0%
!!! TTCTCCCTTTGTTCCTTTTT+TGG + tig0020493:124813-124832 Msa1382310:intron 35.0%
!!! TCCTTTTTTGGTTTAGCTGT+TGG + tig0020493:124825-124844 Msa1382310:intron 35.0%
ACCAACAGCTAAACCAAAAA+AGG - tig0020493:124829-124848 None:intergenic 35.0%
TATCTTCCTAATTCGCTTAC+AGG + tig0020493:124858-124877 Msa1382310:CDS 35.0%
!! CTTAATTTGTGAAACTCGCT+TGG - tig0020493:125018-125037 None:intergenic 35.0%
TGCAAACAATATTTAGGGAG+TGG - tig0020493:125081-125100 None:intergenic 35.0%
CTCCCTAAATATTGTTTGCA+TGG + tig0020493:125081-125100 Msa1382310:intron 35.0%
!! GTTTTGTTACGAGTATAGGT+TGG + tig0020493:125525-125544 Msa1382310:intron 35.0%
GGAAAAGAAATTGAGAGTTG+AGG + tig0020493:125572-125591 Msa1382310:CDS 35.0%
GAAAGATTAAGTCACCTTTG+TGG - tig0020493:125610-125629 None:intergenic 35.0%
GAGCTTATAGAACTGGTAAA+AGG - tig0020493:125654-125673 None:intergenic 35.0%
TTATAATTAAAACGTGGCGC+AGG + tig0020493:125959-125978 Msa1382310:intron 35.0%
GCAAAAAATGCTGGTGTAAA+TGG + tig0020493:126032-126051 Msa1382310:CDS 35.0%
TATGAAGATTTAATGTCGGC+TGG + tig0020493:126208-126227 Msa1382310:CDS 35.0%
! ATGAAGATTTAATGTCGGCT+GGG + tig0020493:126209-126228 Msa1382310:CDS 35.0%
AGACATGCTACTAAAGATAG+CGG - tig0020493:126313-126332 None:intergenic 35.0%
!!! TTTTGGTTTCACACCAAATG+AGG + tig0020493:126409-126428 Msa1382310:intron 35.0%
TGCTTATATTTGTGATCGGA+GGG - tig0020493:127055-127074 None:intergenic 35.0%
TTGCTTATATTTGTGATCGG+AGG - tig0020493:127056-127075 None:intergenic 35.0%
ACGATTCTTAAAAGGCTTCT+TGG + tig0020493:127548-127567 Msa1382310:intron 35.0%
! TAAGAATGTTTTCGCAACAG+AGG - tig0020493:127722-127741 None:intergenic 35.0%
! CTGTGTTGTTGTTGAGATAA+AGG + tig0020493:127750-127769 Msa1382310:CDS 35.0%
ACATACCTGAATTGTCCATT+GGG - tig0020493:127801-127820 None:intergenic 35.0%
TACATACCTGAATTGTCCAT+TGG - tig0020493:127802-127821 None:intergenic 35.0%
CAATTCAGGTATGTAGTTTG+CGG + tig0020493:127807-127826 Msa1382310:intron 35.0%
ACAGTTACACACAGAGTAAT+AGG - tig0020493:128028-128047 None:intergenic 35.0%
! CTTTCTTTTCTCCTAGGATT+CGG + tig0020493:128150-128169 Msa1382310:intron 35.0%
TCGAAAAAATAGGAGGACAA+TGG - tig0020493:128210-128229 None:intergenic 35.0%
AATGTTAGTTCATTCTGGTG+AGG - tig0020493:128606-128625 None:intergenic 35.0%
GGAGGATGAAACTATTAGGT+AGG - tig0020493:121755-121774 None:intergenic 40.0%
TTGTTGCTCGGAATTGAGAA+TGG - tig0020493:121776-121795 None:intergenic 40.0%
TTGAGAGAAAATGGTGGCTA+GGG - tig0020493:121831-121850 None:intergenic 40.0%
ATTGAGAGAAAATGGTGGCT+AGG - tig0020493:121832-121851 None:intergenic 40.0%
AGGGAATTGAGAGAAAATGG+TGG - tig0020493:121837-121856 None:intergenic 40.0%
TGCAGGGAATTGAGAGAAAA+TGG - tig0020493:121840-121859 None:intergenic 40.0%
!! GATTTGGTTGGTGTTACTCT+TGG + tig0020493:122163-122182 Msa1382310:CDS 40.0%
AGAACAACATTCCTTCCCTT+AGG - tig0020493:122190-122209 None:intergenic 40.0%
GTTGTTCTTGAGAGCAAGTA+TGG + tig0020493:122202-122221 Msa1382310:CDS 40.0%
TTGCGTTAAAAAGGTGGAGT+TGG + tig0020493:122689-122708 Msa1382310:intron 40.0%
GAGGATCCAGTTGAGAATAT+TGG + tig0020493:122711-122730 Msa1382310:CDS 40.0%
! TGGTGCTAAATTGGTTAGAC+AGG + tig0020493:122731-122750 Msa1382310:CDS 40.0%
TGCCAAATCATTTGTCTTGG+CGG - tig0020493:122760-122779 None:intergenic 40.0%
GCAAAAAAGTGGGAAGTTTG+AGG - tig0020493:123111-123130 None:intergenic 40.0%
CGCCAGAATAAGCAAAAAAG+TGG - tig0020493:123122-123141 None:intergenic 40.0%
ATTCGTGCATCGTAGGTATT+AGG - tig0020493:123168-123187 None:intergenic 40.0%
!! CAAAGGTGTTCGTGTTTCAT+AGG - tig0020493:123223-123242 None:intergenic 40.0%
CTATGAAACACGAACACCTT+TGG + tig0020493:123221-123240 Msa1382310:intron 40.0%
CACTCTTTGGACGTATCTAT+GGG + tig0020493:123346-123365 Msa1382310:intron 40.0%
ACTCTTTGGACGTATCTATG+GGG + tig0020493:123347-123366 Msa1382310:intron 40.0%
! ATTAGATGTAGGGGTGTGAA+TGG + tig0020493:123467-123486 Msa1382310:intron 40.0%
! ATAGGGGTGTGCATAAAAAC+CGG - tig0020493:123940-123959 None:intergenic 40.0%
AAGCACAAACACCTAACATG+AGG - tig0020493:124100-124119 None:intergenic 40.0%
GGTAGGAAATATGATAGCTG+AGG + tig0020493:124240-124259 Msa1382310:CDS 40.0%
!! GTTGAGTAAGGTTGGTAGAA+AGG + tig0020493:124264-124283 Msa1382310:CDS 40.0%
CTCACTGTCTGTAACAAAGT+AGG - tig0020493:124377-124396 None:intergenic 40.0%
CGTTGAATTTGAGAACTGCA+AGG + tig0020493:124405-124424 Msa1382310:CDS 40.0%
CTAGAGGACGCAATTAGAAA+CGG + tig0020493:124569-124588 Msa1382310:CDS 40.0%
ACTGAAGATTGCAGCACTTA+AGG + tig0020493:124670-124689 Msa1382310:CDS 40.0%
TGGCAATATCATCAAGGTAC+TGG - tig0020493:124721-124740 None:intergenic 40.0%
GATGATATTGCCATCTTGAC+AGG + tig0020493:124728-124747 Msa1382310:CDS 40.0%
ACAGTACCTGTAAGCGAATT+AGG - tig0020493:124867-124886 None:intergenic 40.0%
! TACAGGTACTGTTATCAGAG+AGG + tig0020493:124875-124894 Msa1382310:CDS 40.0%
GACTTAGCTTAGACAAAGCT+GGG + tig0020493:124904-124923 Msa1382310:CDS 40.0%
!! ACAACCACAATAGTTGGTGA+TGG + tig0020493:124972-124991 Msa1382310:CDS 40.0%
ACTTCCATCACCAACTATTG+TGG - tig0020493:124979-124998 None:intergenic 40.0%
ACAATATTTAGGGAGTGGAG+AGG - tig0020493:125076-125095 None:intergenic 40.0%
!!! TGCGAAATATTTTGGCCTGA+TGG + tig0020493:125161-125180 Msa1382310:intron 40.0%
!!! ATATTTTGGCCTGATGGTGT+TGG + tig0020493:125167-125186 Msa1382310:intron 40.0%
CTAAATTAGCCCACCCAAAT+TGG - tig0020493:125249-125268 None:intergenic 40.0%
AAAAGGAGAAGCTGAACGAA+AGG + tig0020493:125371-125390 Msa1382310:CDS 40.0%
GAAAGGATTGCAAAACTGTC+TGG + tig0020493:125388-125407 Msa1382310:CDS 40.0%
TTCAACGAGTTCACTGAGAT+GGG - tig0020493:125444-125463 None:intergenic 40.0%
TTTCAACGAGTTCACTGAGA+TGG - tig0020493:125445-125464 None:intergenic 40.0%
ACAAACTGAGACAGAACTCA+AGG + tig0020493:125551-125570 Msa1382310:CDS 40.0%
TTTGCTCAGACTTGCATCAA+AGG + tig0020493:125734-125753 Msa1382310:CDS 40.0%
ATCAAAGGTGGATGCAATCA+AGG + tig0020493:125749-125768 Msa1382310:CDS 40.0%
TCCAACGACAATACGAGATA+CGG + tig0020493:126163-126182 Msa1382310:CDS 40.0%
TACGGATATAATGCTGCAAC+TGG + tig0020493:126181-126200 Msa1382310:CDS 40.0%
TGGGATCATTGATCCAACAA+AGG + tig0020493:126228-126247 Msa1382310:CDS 40.0%
!! CAGATTTGTTGAAGTGTCAC+TGG + tig0020493:126519-126538 Msa1382310:intron 40.0%
!! GAAGTGTCACTGGACTTTTA+CGG + tig0020493:126529-126548 Msa1382310:intron 40.0%
ATTAATGGCGAGCAATTTCG+AGG - tig0020493:126929-126948 None:intergenic 40.0%
!! TCATCACATTCGGTTTGTTG+TGG + tig0020493:127026-127045 Msa1382310:intron 40.0%
!! CATCACATTCGGTTTGTTGT+GGG + tig0020493:127027-127046 Msa1382310:intron 40.0%
TTGCTTATATTTGTGACCGG+AGG + tig0020493:127171-127190 Msa1382310:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG + tig0020493:127172-127191 Msa1382310:intron 40.0%
AGAGAAGGGGTAACATATAC+AGG - tig0020493:127281-127300 None:intergenic 40.0%
AGCGAAGAAAATGGAGAGAA+GGG - tig0020493:127295-127314 None:intergenic 40.0%
GTCCAGCAGAGAAATCAAAA+AGG + tig0020493:127315-127334 Msa1382310:intron 40.0%
!!! CACCTTTTTGATTTCTCTGC+TGG - tig0020493:127320-127339 None:intergenic 40.0%
! CAATTTCTTCAGTTTGGTGG+AGG - tig0020493:127382-127401 None:intergenic 40.0%
GCTCAATTTCTTCAGTTTGG+TGG - tig0020493:127385-127404 None:intergenic 40.0%
GAGTTAGCAAAGAGAGAGAT+AGG - tig0020493:127416-127435 None:intergenic 40.0%
AGTGTAGTGTCACACATAGA+AGG - tig0020493:127600-127619 None:intergenic 40.0%
TGTTGAGATAAAGGAACCTG+AGG + tig0020493:127759-127778 Msa1382310:CDS 40.0%
CGAATCCTAGGAGAAAAGAA+AGG - tig0020493:128152-128171 None:intergenic 40.0%
AAGTCCAAATGTAGGACAGA+CGG + tig0020493:128269-128288 Msa1382310:three_prime_UTR 40.0%
! AACTGTTTTGTACGTGTTCC+CGG + tig0020493:128389-128408 Msa1382310:three_prime_UTR 40.0%
AACCTCTCCGAGATTATTTC+CGG - tig0020493:128411-128430 None:intergenic 40.0%
TTGCTCGGAATTGAGAATGG+AGG - tig0020493:121773-121792 None:intergenic 45.0%
GGCTAGGGTTTAAGAGGATT+TGG - tig0020493:121816-121835 None:intergenic 45.0%
AATGGTGGCTAGGGTTTAAG+AGG - tig0020493:121822-121841 None:intergenic 45.0%
TGGGAATGAAGAAATGGCAG+CGG - tig0020493:121906-121925 None:intergenic 45.0%
GAAATACAACTCCTTGGCCA+TGG - tig0020493:122002-122021 None:intergenic 45.0%
TTCCGCTATCAAGAAACTCC+AGG + tig0020493:122033-122052 Msa1382310:CDS 45.0%
CACCTGGAGTTTCTTGATAG+CGG - tig0020493:122038-122057 None:intergenic 45.0%
GCTATCAAGAAACTCCAGGT+GGG + tig0020493:122037-122056 Msa1382310:intron 45.0%
GAATGGTGTGAACAAGCTTG+CGG + tig0020493:122141-122160 Msa1382310:intron 45.0%
TGTGAACAAGCTTGCGGATT+TGG + tig0020493:122147-122166 Msa1382310:CDS 45.0%
! AACAAGCTTGCGGATTTGGT+TGG + tig0020493:122151-122170 Msa1382310:CDS 45.0%
!! TGGTGTTACTCTTGGTCCTA+AGG + tig0020493:122171-122190 Msa1382310:CDS 45.0%
!! GGTGTTACTCTTGGTCCTAA+GGG + tig0020493:122172-122191 Msa1382310:CDS 45.0%
TTACTCTTGGTCCTAAGGGA+AGG + tig0020493:122176-122195 Msa1382310:CDS 45.0%
ACTCTAAACACACACCTCTC+TGG - tig0020493:122263-122282 None:intergenic 45.0%
CGTTAAAAAGGTGGAGTTGG+AGG + tig0020493:122692-122711 Msa1382310:intron 45.0%
AGCCGCCAAGACAAATGATT+TGG + tig0020493:122755-122774 Msa1382310:CDS 45.0%
! GCCAAGACAAATGATTTGGC+AGG + tig0020493:122759-122778 Msa1382310:CDS 45.0%
GCCTGCCAAATCATTTGTCT+TGG - tig0020493:122763-122782 None:intergenic 45.0%
! ACAAATGATTTGGCAGGCGA+TGG + tig0020493:122765-122784 Msa1382310:CDS 45.0%
!!! TACCTCTGTTGTTTTGGCTC+AGG + tig0020493:122794-122813 Msa1382310:CDS 45.0%
!!! ACCTCTGTTGTTTTGGCTCA+GGG + tig0020493:122795-122814 Msa1382310:CDS 45.0%
TACCACGTGTGATAAGCACA+GGG - tig0020493:122972-122991 None:intergenic 45.0%
ATACCACGTGTGATAAGCAC+AGG - tig0020493:122973-122992 None:intergenic 45.0%
TACGATGCACGAATGCCTTT+GGG + tig0020493:123174-123193 Msa1382310:intron 45.0%
!! ACACGAACACCTTTGGGATT+AGG + tig0020493:123228-123247 Msa1382310:intron 45.0%
CCTAAGGTGTGTTGAAGCAA+AGG - tig0020493:123326-123345 None:intergenic 45.0%
CCTTTGCTTCAACACACCTT+AGG + tig0020493:123323-123342 Msa1382310:intron 45.0%
AACACACCTTAGGCACTCTT+TGG + tig0020493:123333-123352 Msa1382310:intron 45.0%
!! ATACGTCCAAAGAGTGCCTA+AGG - tig0020493:123342-123361 None:intergenic 45.0%
GCACTCTTTGGACGTATCTA+TGG + tig0020493:123345-123364 Msa1382310:intron 45.0%
CAGAAGAGGGGTTGTGAAAT+GGG + tig0020493:123775-123794 Msa1382310:intron 45.0%
TATAACACACCCACACACAC+AGG + tig0020493:124029-124048 Msa1382310:intron 45.0%
ACATTGACACCTGTGTGTGT+GGG - tig0020493:124041-124060 None:intergenic 45.0%
CAACATGTCTGCCTCATGTT+AGG + tig0020493:124086-124105 Msa1382310:intron 45.0%
GTTGTGGTTGTGTGAATTGC+AGG + tig0020493:124162-124181 Msa1382310:intron 45.0%
GTTGTGTGAATTGCAGGTTG+AGG + tig0020493:124168-124187 Msa1382310:intron 45.0%
! GCAGGTTGAGGATAGTGAAT+TGG + tig0020493:124180-124199 Msa1382310:intron 45.0%
GGATAGTGAATTGGCTGATG+TGG + tig0020493:124189-124208 Msa1382310:CDS 45.0%
TAGTGCAGGGAACAATCATG+AGG + tig0020493:124219-124238 Msa1382310:CDS 45.0%
GATATTGCCATCTTGACAGG+AGG + tig0020493:124731-124750 Msa1382310:CDS 45.0%
! AGGTACTGTTATCAGAGAGG+AGG + tig0020493:124878-124897 Msa1382310:CDS 45.0%
ACTGTTATCAGAGAGGAGGT+TGG + tig0020493:124882-124901 Msa1382310:CDS 45.0%
GGACTTAGCTTAGACAAAGC+TGG + tig0020493:124903-124922 Msa1382310:CDS 45.0%
CTTAGACAAAGCTGGGAATG+AGG + tig0020493:124911-124930 Msa1382310:CDS 45.0%
AAAGCTGGGAATGAGGTTCT+AGG + tig0020493:124918-124937 Msa1382310:CDS 45.0%
! TCGCTTGGTAACTGCTTCTT+GGG - tig0020493:125003-125022 None:intergenic 45.0%
ATATTTAGGGAGTGGAGAGG+CGG - tig0020493:125073-125092 None:intergenic 45.0%
GAATCAAACCTGAGACCTTG+AGG - tig0020493:125217-125236 None:intergenic 45.0%
AGGATTGCAAAACTGTCTGG+CGG + tig0020493:125391-125410 Msa1382310:CDS 45.0%
TACAATACCCTCCTCAACAG+CGG - tig0020493:125697-125716 None:intergenic 45.0%
!! GTTGAGGAGGGTATTGTAGT+TGG + tig0020493:125699-125718 Msa1382310:CDS 45.0%
AATTAAAACGTGGCGCAGGT+TGG + tig0020493:125963-125982 Msa1382310:intron 45.0%
! TGGCAGTGTTGTTAGTGAGA+AGG + tig0020493:126052-126071 Msa1382310:CDS 45.0%
TCCGTATCTCGTATTGTCGT+TGG - tig0020493:126167-126186 None:intergenic 45.0%
AGGGCCCGCATCATTATAAA+TGG + tig0020493:126354-126373 Msa1382310:intron 45.0%
! CTGGACTTTTACGGTGTGTT+TGG + tig0020493:126538-126557 Msa1382310:intron 45.0%
GCGAAGAAAATGGAGAGAAG+GGG - tig0020493:127294-127313 None:intergenic 45.0%
CAGCGAAGAAAATGGAGAGA+AGG - tig0020493:127296-127315 None:intergenic 45.0%
CATAGAAGGCAGAAACATGC+AGG - tig0020493:127586-127605 None:intergenic 45.0%
TTGTCCATTGGGTTACCAAC+AGG - tig0020493:127790-127809 None:intergenic 45.0%
GGTAACCCAATGGACAATTC+AGG + tig0020493:127793-127812 Msa1382310:CDS 45.0%
! CTCTGCCTTTCTTTTCTCCT+AGG + tig0020493:128144-128163 Msa1382310:intron 45.0%
ACTTCTACATGCCGAATCCT+AGG - tig0020493:128164-128183 None:intergenic 45.0%
TAGGATTCGGCATGTAGAAG+TGG + tig0020493:128163-128182 Msa1382310:intron 45.0%
AAGTGGCGGCTGCTTAAAAT+GGG + tig0020493:128180-128199 Msa1382310:three_prime_UTR 45.0%
GTAGGACCAAGTCCAAATGT+AGG + tig0020493:128261-128280 Msa1382310:three_prime_UTR 45.0%
GTCTGTCCTACATTTGGACT+TGG - tig0020493:128270-128289 None:intergenic 45.0%
CGTGTTCCCGGAAATAATCT+CGG + tig0020493:128401-128420 Msa1382310:three_prime_UTR 45.0%
ACCTCTCCGAGATTATTTCC+GGG - tig0020493:128410-128429 None:intergenic 45.0%
!!! TTAAAATTTTAAAAACAATT+TGG - tig0020493:123834-123853 None:intergenic 5.0%
!!! TTGTTTTTAAAATTTTAAAT+TGG + tig0020493:123836-123855 Msa1382310:intron 5.0%
!!! TATAAATATATTTTTGAATA+GGG - tig0020493:126726-126745 None:intergenic 5.0%
CTCTCAATTCCCTGCAACCA+TGG + tig0020493:121844-121863 Msa1382310:exon 50.0%
TGCATGATGCCATGGTTGCA+GGG - tig0020493:121856-121875 None:intergenic 50.0%
TTGCATGATGCCATGGTTGC+AGG - tig0020493:121857-121876 None:intergenic 50.0%
AAGAGAGGTTGCATGAGGAG+AGG - tig0020493:121880-121899 None:intergenic 50.0%
GAATGAAGAAATGGCAGCGG+AGG - tig0020493:121903-121922 None:intergenic 50.0%
! GTTGCTGGTGGTTTTTCTGC+GGG - tig0020493:121939-121958 None:intergenic 50.0%
! CGTTGCTGGTGGTTTTTCTG+CGG - tig0020493:121940-121959 None:intergenic 50.0%
TCGCTCTCACCAGGAAGAAT+CGG + tig0020493:121960-121979 Msa1382310:CDS 50.0%
! TTTAGGGCTCCGATTCTTCC+TGG - tig0020493:121972-121991 None:intergenic 50.0%
TGGCCATGGCTGAGACTTTA+GGG - tig0020493:121988-122007 None:intergenic 50.0%
TTGGCCATGGCTGAGACTTT+AGG - tig0020493:121989-122008 None:intergenic 50.0%
TAAAGTCTCAGCCATGGCCA+AGG + tig0020493:121988-122007 Msa1382310:CDS 50.0%
CGCTATCAAGAAACTCCAGG+TGG + tig0020493:122036-122055 Msa1382310:intron 50.0%
ATGATTGGGAAGAACCCACC+TGG - tig0020493:122054-122073 None:intergenic 50.0%
! TTCGTCCGAGTTTAGGGTCA+AGG + tig0020493:122325-122344 Msa1382310:intron 50.0%
! GTGGGGTGTTTGCTTTGATG+CGG + tig0020493:122503-122522 Msa1382310:intron 50.0%
ACCCTGAGCCAAAACAACAG+AGG - tig0020493:122799-122818 None:intergenic 50.0%
!! GCTCAGGGTCTTATTGCAGA+AGG + tig0020493:122810-122829 Msa1382310:CDS 50.0%
AACCCTGTGCTTATCACACG+TGG + tig0020493:122967-122986 Msa1382310:CDS 50.0%
!! CAAAGGCATTCGTGCATCGT+AGG - tig0020493:123175-123194 None:intergenic 50.0%
CTACGATGCACGAATGCCTT+TGG + tig0020493:123173-123192 Msa1382310:intron 50.0%
GCACGTAAGCCTAATCCCAA+AGG - tig0020493:123240-123259 None:intergenic 50.0%
GCAGAAGAGGGGTTGTGAAA+TGG + tig0020493:123774-123793 Msa1382310:intron 50.0%
GACATTGACACCTGTGTGTG+TGG - tig0020493:124042-124061 None:intergenic 50.0%
ATGTGGCAGCAGTTAGTGCA+GGG + tig0020493:124206-124225 Msa1382310:CDS 50.0%
GCAGGGAACAATCATGAGGT+AGG + tig0020493:124223-124242 Msa1382310:CDS 50.0%
!! GATAGCTGAGGCGTTGAGTA+AGG + tig0020493:124252-124271 Msa1382310:CDS 50.0%
!! AAAGGGTGTCGTGACACTTG+AGG + tig0020493:124282-124301 Msa1382310:CDS 50.0%
! GAGGGCATGCAATTTGATCG+AGG + tig0020493:124340-124359 Msa1382310:CDS 50.0%
ATTGCAGCACTTAAGGCTCC+TGG + tig0020493:124677-124696 Msa1382310:CDS 50.0%
GCACTTAAGGCTCCTGGATT+TGG + tig0020493:124683-124702 Msa1382310:CDS 50.0%
CTCTTGCGTTCTCCAAATCC+AGG - tig0020493:124698-124717 None:intergenic 50.0%
!! GAATGAGGTTCTAGGCACTG+CGG + tig0020493:124926-124945 Msa1382310:CDS 50.0%
ATCTTTGGTGAGCACCACCT+TGG - tig0020493:124952-124971 None:intergenic 50.0%
! CTCGCTTGGTAACTGCTTCT+TGG - tig0020493:125004-125023 None:intergenic 50.0%
GAGAGGGGGAAACCTCAATT+TGG - tig0020493:125043-125062 None:intergenic 50.0%
TATTTAGGGAGTGGAGAGGC+GGG - tig0020493:125072-125091 None:intergenic 50.0%
TCAAACCTGAGACCTTGAGG+AGG - tig0020493:125214-125233 None:intergenic 50.0%
GTCTCAGGTTTGATTCTCCG+CGG + tig0020493:125221-125240 Msa1382310:intron 50.0%
! ATTCTCCGCGGTGCCAATTT+GGG + tig0020493:125233-125252 Msa1382310:intron 50.0%
GGACGCTCTTAATGCCACAA+AGG + tig0020493:125593-125612 Msa1382310:CDS 50.0%
TTACTTTCAGGCCGCTGTTG+AGG + tig0020493:125683-125702 Msa1382310:intron 50.0%
!! GAGGAGGGTATTGTAGTTGG+CGG + tig0020493:125702-125721 Msa1382310:CDS 50.0%
GCTCAGACTTGCATCAAAGG+TGG + tig0020493:125737-125756 Msa1382310:CDS 50.0%
! TTTGTGACCGGAGGGTGTAT+TGG + tig0020493:127180-127199 Msa1382310:intron 50.0%
! TTGTGACCGGAGGGTGTATT+GGG + tig0020493:127181-127200 Msa1382310:intron 50.0%
CTGCTGGACAGCGAAGAAAA+TGG - tig0020493:127304-127323 None:intergenic 50.0%
! GAAGCATCCTACTGTTGTCC+AGG + tig0020493:127669-127688 Msa1382310:intron 50.0%
!! TGCACCTGTTGGTAACCCAA+TGG + tig0020493:127783-127802 Msa1382310:CDS 50.0%
GATTCGGCATGTAGAAGTGG+CGG + tig0020493:128166-128185 Msa1382310:exon 50.0%
GAAGTGGCGGCTGCTTAAAA+TGG + tig0020493:128179-128198 Msa1382310:exon 50.0%
ACAGCCGTCTGTCCTACATT+TGG - tig0020493:128276-128295 None:intergenic 50.0%
TCCCGGAAATAATCTCGGAG+AGG + tig0020493:128406-128425 Msa1382310:three_prime_UTR 50.0%
GGAGAGGTTGCATGATGCCA+TGG - tig0020493:121864-121883 None:intergenic 55.0%
GGAGGAAGAGAGGTTGCATG+AGG - tig0020493:121885-121904 None:intergenic 55.0%
AAATGGCAGCGGAGGAAGAG+AGG - tig0020493:121895-121914 None:intergenic 55.0%
TTCTGCGGGCGGAAGAAGAT+GGG - tig0020493:121925-121944 None:intergenic 55.0%
TTTCTGCGGGCGGAAGAAGA+TGG - tig0020493:121926-121945 None:intergenic 55.0%
GAGCCCTAAAGTCTCAGCCA+TGG + tig0020493:121982-122001 Msa1382310:CDS 55.0%
!! TGGTGTCACTGTTGCCAGAG+AGG + tig0020493:122246-122265 Msa1382310:CDS 55.0%
GATGTGGCAGCAGTTAGTGC+AGG + tig0020493:124205-124224 Msa1382310:CDS 55.0%
!! GCTGAGGCGTTGAGTAAGGT+TGG + tig0020493:124256-124275 Msa1382310:CDS 55.0%
! GGTGTCGTGACACTTGAGGA+GGG + tig0020493:124286-124305 Msa1382310:CDS 55.0%
TCGTGACACTTGAGGAGGGA+AGG + tig0020493:124290-124309 Msa1382310:CDS 55.0%
ATTTAGGGAGTGGAGAGGCG+GGG - tig0020493:125071-125090 None:intergenic 55.0%
!! TTGGCCTGATGGTGTTGGCT+TGG + tig0020493:125172-125191 Msa1382310:intron 55.0%
!! TGGCCTGATGGTGTTGGCTT+GGG + tig0020493:125173-125192 Msa1382310:intron 55.0%
!! ATGGTGTTGGCTTGGGACCT+TGG + tig0020493:125180-125199 Msa1382310:intron 55.0%
! TTGAGGAGGAGCACACTCCA+AGG - tig0020493:125200-125219 None:intergenic 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG + tig0020493:125199-125218 Msa1382310:intron 55.0%
! GATTCTCCGCGGTGCCAATT+TGG + tig0020493:125232-125251 Msa1382310:intron 55.0%
TGCAAAACTGTCTGGCGGTG+TGG + tig0020493:125396-125415 Msa1382310:CDS 55.0%
TGGCGGTGTGGCTGTAATTC+AGG + tig0020493:125408-125427 Msa1382310:CDS 55.0%
TTTCAGGCCGCTGTTGAGGA+GGG + tig0020493:125687-125706 Msa1382310:intron 55.0%
!! GAGGGTATTGTAGTTGGCGG+TGG + tig0020493:125705-125724 Msa1382310:CDS 55.0%
! TGTGACCGGAGGGTGTATTG+GGG + tig0020493:127182-127201 Msa1382310:intron 55.0%
CGTTTCCCCAATACACCCTC+CGG - tig0020493:127190-127209 None:intergenic 55.0%
GCATCCTACTGTTGTCCAGG+TGG + tig0020493:127672-127691 Msa1382310:intron 55.0%
CTGACCACCTGGACAACAGT+AGG - tig0020493:127679-127698 None:intergenic 55.0%
CCAAGCAACATCTGACCACC+TGG - tig0020493:127690-127709 None:intergenic 55.0%
CCAGGTGGTCAGATGTTGCT+TGG + tig0020493:127687-127706 Msa1382310:intron 55.0%
TTACCAACAGGTGCAGCCTC+AGG - tig0020493:127778-127797 None:intergenic 55.0%
! GCTGGTGGTTTTTCTGCGGG+CGG - tig0020493:121936-121955 None:intergenic 60.0%
! GGGTGTCGTGACACTTGAGG+AGG + tig0020493:124285-124304 Msa1382310:CDS 60.0%
AGAGGCGGGGAAAGAGAGAG+GGG - tig0020493:125058-125077 None:intergenic 60.0%
GAGAGGCGGGGAAAGAGAGA+GGG - tig0020493:125059-125078 None:intergenic 60.0%
GGTCCCAAGCCAACACCATC+AGG - tig0020493:125179-125198 None:intergenic 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG + tig0020493:125206-125225 Msa1382310:intron 60.0%
! TCCGCGGTGCCAATTTGGGT+GGG + tig0020493:125237-125256 Msa1382310:intron 60.0%
CTTTCAGGCCGCTGTTGAGG+AGG + tig0020493:125686-125705 Msa1382310:intron 60.0%
GAACCTGAGGCTGCACCTGT+TGG + tig0020493:127772-127791 Msa1382310:CDS 60.0%
GGTGAGAGCGACGTTGCTGG+TGG - tig0020493:121951-121970 None:intergenic 65.0%
CCTGGTGAGAGCGACGTTGC+TGG - tig0020493:121954-121973 None:intergenic 65.0%
CCAGCAACGTCGCTCTCACC+AGG + tig0020493:121951-121970 Msa1382310:CDS 65.0%
!! GGTTCTAGGCACTGCGGCCA+AGG + tig0020493:124932-124951 Msa1382310:CDS 65.0%
! TCTAGGCACTGCGGCCAAGG+TGG + tig0020493:124935-124954 Msa1382310:CDS 65.0%
GAGGCGGGGAAAGAGAGAGG+GGG - tig0020493:125057-125076 None:intergenic 65.0%
GGAGAGGCGGGGAAAGAGAG+AGG - tig0020493:125060-125079 None:intergenic 65.0%
! CTCCGCGGTGCCAATTTGGG+TGG + tig0020493:125236-125255 Msa1382310:intron 65.0%
GCCCACCCAAATTGGCACCG+CGG - tig0020493:125241-125260 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0020493 gene 121729 128671 121729 ID=Msa1382310;Name=Msa1382310
tig0020493 mRNA 121729 128671 121729 ID=Msa1382310-mRNA-1;Parent=Msa1382310;Name=Msa1382310-mRNA-1;_AED=0.29;_eAED=0.29;_QI=134|0.92|0.93|1|0.85|0.86|15|397|605
tig0020493 exon 121729 122054 121729 ID=Msa1382310-mRNA-1:exon:7989;Parent=Msa1382310-mRNA-1
tig0020493 exon 122142 122267 122142 ID=Msa1382310-mRNA-1:exon:7990;Parent=Msa1382310-mRNA-1
tig0020493 exon 122702 122839 122702 ID=Msa1382310-mRNA-1:exon:7991;Parent=Msa1382310-mRNA-1
tig0020493 exon 122949 123044 122949 ID=Msa1382310-mRNA-1:exon:7992;Parent=Msa1382310-mRNA-1
tig0020493 exon 124184 124426 124184 ID=Msa1382310-mRNA-1:exon:7993;Parent=Msa1382310-mRNA-1
tig0020493 exon 124518 124752 124518 ID=Msa1382310-mRNA-1:exon:7994;Parent=Msa1382310-mRNA-1
tig0020493 exon 124841 125049 124841 ID=Msa1382310-mRNA-1:exon:7995;Parent=Msa1382310-mRNA-1
tig0020493 exon 125352 125429 125352 ID=Msa1382310-mRNA-1:exon:7996;Parent=Msa1382310-mRNA-1
tig0020493 exon 125543 125614 125543 ID=Msa1382310-mRNA-1:exon:7997;Parent=Msa1382310-mRNA-1
tig0020493 exon 125693 125797 125693 ID=Msa1382310-mRNA-1:exon:7998;Parent=Msa1382310-mRNA-1
tig0020493 exon 125981 126073 125981 ID=Msa1382310-mRNA-1:exon:7999;Parent=Msa1382310-mRNA-1
tig0020493 exon 126157 126249 126157 ID=Msa1382310-mRNA-1:exon:8000;Parent=Msa1382310-mRNA-1
tig0020493 exon 127691 127814 127691 ID=Msa1382310-mRNA-1:exon:8001;Parent=Msa1382310-mRNA-1
tig0020493 exon 128166 128473 128166 ID=Msa1382310-mRNA-1:exon:8002;Parent=Msa1382310-mRNA-1
tig0020493 exon 128569 128671 128569 ID=Msa1382310-mRNA-1:exon:8003;Parent=Msa1382310-mRNA-1
tig0020493 five_prime_UTR 121729 121862 121729 ID=Msa1382310-mRNA-1:five_prime_utr;Parent=Msa1382310-mRNA-1
tig0020493 CDS 121863 122054 121863 ID=Msa1382310-mRNA-1:cds;Parent=Msa1382310-mRNA-1
tig0020493 CDS 122142 122267 122142 ID=Msa1382310-mRNA-1:cds;Parent=Msa1382310-mRNA-1
tig0020493 CDS 122702 122839 122702 ID=Msa1382310-mRNA-1:cds;Parent=Msa1382310-mRNA-1
tig0020493 CDS 122949 123044 122949 ID=Msa1382310-mRNA-1:cds;Parent=Msa1382310-mRNA-1
tig0020493 CDS 124184 124426 124184 ID=Msa1382310-mRNA-1:cds;Parent=Msa1382310-mRNA-1
tig0020493 CDS 124518 124752 124518 ID=Msa1382310-mRNA-1:cds;Parent=Msa1382310-mRNA-1
tig0020493 CDS 124841 125049 124841 ID=Msa1382310-mRNA-1:cds;Parent=Msa1382310-mRNA-1
tig0020493 CDS 125352 125429 125352 ID=Msa1382310-mRNA-1:cds;Parent=Msa1382310-mRNA-1
tig0020493 CDS 125543 125614 125543 ID=Msa1382310-mRNA-1:cds;Parent=Msa1382310-mRNA-1
tig0020493 CDS 125693 125797 125693 ID=Msa1382310-mRNA-1:cds;Parent=Msa1382310-mRNA-1
tig0020493 CDS 125981 126073 125981 ID=Msa1382310-mRNA-1:cds;Parent=Msa1382310-mRNA-1
tig0020493 CDS 126157 126249 126157 ID=Msa1382310-mRNA-1:cds;Parent=Msa1382310-mRNA-1
tig0020493 CDS 127691 127814 127691 ID=Msa1382310-mRNA-1:cds;Parent=Msa1382310-mRNA-1
tig0020493 CDS 128166 128179 128166 ID=Msa1382310-mRNA-1:cds;Parent=Msa1382310-mRNA-1
tig0020493 three_prime_UTR 128180 128473 128180 ID=Msa1382310-mRNA-1:three_prime_utr;Parent=Msa1382310-mRNA-1
tig0020493 three_prime_UTR 128569 128671 128569 ID=Msa1382310-mRNA-1:three_prime_utr;Parent=Msa1382310-mRNA-1
Gene Sequence

>Msa1382310

ATGGCATCATGCAACCTCTCCTCATGCAACCTCTCTTCCTCCGCTGCCATTTCTTCATTCCCATCTTCTTCCGCCCGCAGAAAAACCACCAGCAACGTCGCTCTCACCAGGAAGAATCGGAGCCCTAAAGTCTCAGCCATGGCCAAGGAGTTGTATTTCAACAAAGATGGTTCCGCTATCAAGAAACTCCAGAATGGTGTGAACAAGCTTGCGGATTTGGTTGGTGTTACTCTTGGTCCTAAGGGAAGGAATGTTGTTCTTGAGAGCAAGTATGGTTCTCCTAAGATTGTTAATGATGGTGTCACTGTTGCCAGAGAGGTGGAGTTGGAGGATCCAGTTGAGAATATTGGTGCTAAATTGGTTAGACAGGCAGCCGCCAAGACAAATGATTTGGCAGGCGATGGAACTACTACCTCTGTTGTTTTGGCTCAGGGTCTTATTGCAGAAGGTGTTAAGGTTGTTGCAGCTGGTGCAAACCCTGTGCTTATCACACGTGGTATTGAGAAGACAGCGAAAGCTCTTGTTGCTGAACTTAAACTAATGTCAAAAGAGGTTGAGGATAGTGAATTGGCTGATGTGGCAGCAGTTAGTGCAGGGAACAATCATGAGGTAGGAAATATGATAGCTGAGGCGTTGAGTAAGGTTGGTAGAAAGGGTGTCGTGACACTTGAGGAGGGAAGGAGTGCTGAAAACAATCTGTATGTTGTTGAGGGCATGCAATTTGATCGAGGATATATTTCACCCTACTTTGTTACAGACAGTGAGAAAATGACCGTTGAATTTGAGAACTGCAAGTTGCTTTTAGTTGACAAAAAGATATCCAATGCAAGGGATCTTATTAACATACTAGAGGACGCAATTAGAAACGGATTCCCTATTTTGATAATTGCAGAGGATATTGAACAAGAAGCTTTGGCAACTCTTGTTGTGAACAAACTTAGAGGATCACTGAAGATTGCAGCACTTAAGGCTCCTGGATTTGGAGAACGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACAGGAGCTGTTGGTAACAATATGTATCTTCCTAATTCGCTTACAGGTACTGTTATCAGAGAGGAGGTTGGACTTAGCTTAGACAAAGCTGGGAATGAGGTTCTAGGCACTGCGGCCAAGGTGGTGCTCACCAAAGATACAACCACAATAGTTGGTGATGGAAGTACCCAAGAAGCAGTTACCAAGCGAGTTTCACAAATTAAGAACCAAATTGAGGCTGCAGAACAAGATTATGAAAAGGAGAAGCTGAACGAAAGGATTGCAAAACTGTCTGGCGGTGTGGCTGTAATTCAGGTTGGTGCACAAACTGAGACAGAACTCAAGGAAAAGAAATTGAGAGTTGAGGACGCTCTTAATGCCACAAAGGCCGCTGTTGAGGAGGGTATTGTAGTTGGCGGTGGGTGCACTTTGCTCAGACTTGCATCAAAGGTGGATGCAATCAAGGCTACCCTTGCAAATGATGAAGAAAAAGTTGGAGCAGACATTGTTAAAAGAGCTCTTAGTTACCCTCTGAAATTAATAGCAAAAAATGCTGGTGTAAATGGCAGTGTTGTTAGTGAGAAGGTTCTATCCAACGACAATACGAGATACGGATATAATGCTGCAACTGGAAAATATGAAGATTTAATGTCGGCTGGGATCATTGATCCAACAAAGGTGGTCAGATGTTGCTTGGAACATGCAGCCTCTGTTGCGAAAACATTCTTAATGTCAGACTGTGTTGTTGTTGAGATAAAGGAACCTGAGGCTGCACCTGTTGGTAACCCAATGGACAATTCAGGATTCGGCATGTAG
Protein sequence

>Msa1382310

MASCNLSSCNLSSSAAISSFPSSSARRKTTSNVALTRKNRSPKVSAMAKELYFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTAKALVAELKLMSKEVEDSELADVAAVSAGNNHEVGNMIAEALSKVGRKGVVTLEEGRSAENNLYVVEGMQFDRGYISPYFVTDSEKMTVEFENCKLLLVDKKISNARDLINILEDAIRNGFPILIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGAVGNNMYLPNSLTGTVIREEVGLSLDKAGNEVLGTAAKVVLTKDTTTIVGDGSTQEAVTKRVSQIKNQIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNTRYGYNAATGKYEDLMSAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEAAPVGNPMDNSGFGM*