AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0425940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0425940 MtrunA17_Chr3g0128051 95.413 218 2 1 1 210 1 218 4.60e-147 407
Msa0425940 MtrunA17_Chr3g0128041 74.561 228 39 5 1 210 1 227 3.25e-99 287
Msa0425940 MtrunA17_Chr7g0255421 66.000 150 38 3 69 210 59 203 8.28e-60 186
Msa0425940 MtrunA17_Chr3g0128591 62.121 132 32 3 83 210 382 499 7.63e-39 139
Msa0425940 MtrunA17_Chr3g0128571 92.857 42 3 0 168 209 21 62 5.13e-20 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0425940 AT3G49470.1 60.909 220 73 4 1 210 1 217 1.31e-67 207
Msa0425940 AT3G49470.2 67.045 176 48 3 36 201 33 208 3.36e-62 193
Msa0425940 AT4G10480.1 68.590 156 40 2 64 210 57 212 3.90e-61 190
Msa0425940 AT4G10480.2 69.281 153 38 2 67 210 59 211 8.84e-61 189
Msa0425940 AT1G33040.1 65.359 153 44 2 67 210 57 209 1.09e-58 184
Msa0425940 AT3G12390.1 64.000 150 43 2 69 210 57 203 1.06e-54 173
Msa0425940 AT5G13850.1 67.763 152 39 2 69 210 53 204 5.03e-54 172

Find 78 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAGACCTACGTTATATT+TGG 0.142242 3_2:+76372205 Msa0425940:CDS
AATCTCTGTTTCTTTCTTTC+GGG 0.186468 3_2:+76370062 Msa0425940:five_prime_UTR
TAATCTCTGTTTCTTTCTTT+CGG 0.192037 3_2:+76370061 Msa0425940:five_prime_UTR
ATAACGTAGGTCTCTGAATT+TGG 0.208217 3_2:-76372199 None:intergenic
ATCAAATGGTTCATATTGTT+TGG 0.254145 3_2:-76369961 None:intergenic
GGAAGTGGGCTTAAATGTTT+TGG 0.267378 3_2:+76369937 None:intergenic
CAGAGACCTACGTTATATTT+GGG 0.269261 3_2:+76372206 Msa0425940:CDS
TCAACCTCCTCTTCCTCTTC+AGG 0.290554 3_2:-76372352 None:intergenic
GCCATTATAGATCCCATATC+TGG 0.303001 3_2:-76372292 None:intergenic
TCAAATGGTTCATATTGTTT+GGG 0.356082 3_2:-76369960 None:intergenic
CACAAGCTGCTCAACAGTTC+AGG 0.364720 3_2:+76372266 Msa0425940:CDS
ACAGTTCAGGATGCCAGATA+TGG 0.369124 3_2:+76372279 Msa0425940:CDS
GCCAGATATGGGATCTATAA+TGG 0.384072 3_2:+76372291 Msa0425940:CDS
AACCCATTGATGGTGTTACT+AGG 0.392278 3_2:+76371830 Msa0425940:CDS
TACCCTAGTAACACCATCAA+TGG 0.408223 3_2:-76371833 None:intergenic
GAAAGAAACAGAGATTAGAT+AGG 0.411750 3_2:-76370055 None:intergenic
TTTGGACTCTTGAAGACATC+AGG 0.416876 3_2:-76372181 None:intergenic
TCGTTATCATCCTCGACAAT+AGG 0.425509 3_2:-76370306 None:intergenic
AGGCTCTCAAAACTCACAAT+GGG 0.426765 3_2:+76372449 Msa0425940:CDS
TTTGAGAGCCTTGACAGCCT+TGG 0.440959 3_2:-76372437 None:intergenic
ACCACTCTCTCCACATCAAA+TGG 0.446890 3_2:-76369975 None:intergenic
GAAGAGGAGGTTGATGAAAC+TGG 0.453955 3_2:+76372361 Msa0425940:CDS
CGTCGACGGAGGGAAGTTGT+TGG 0.458861 3_2:-76370159 None:intergenic
TCGAAAAGCAATGTTGAAGC+TGG 0.458999 3_2:+76371801 Msa0425940:CDS
TTGTTGGTCGGTGGCTTCGT+CGG 0.466936 3_2:-76370143 None:intergenic
CTTGAGCGTTGTTTCGTCGA+CGG 0.472022 3_2:-76370173 None:intergenic
GAGCTGGTAATGACACAAGC+TGG 0.474762 3_2:+76372403 Msa0425940:CDS
GTCGGCGGCAGCGTCAATGA+TGG 0.479255 3_2:-76370125 None:intergenic
ACTCACAATGGGGACATTGT+TGG 0.489937 3_2:+76372460 Msa0425940:CDS
GTGTCTGCAACTGAGAGCTC+AGG 0.502334 3_2:-76372246 None:intergenic
ACCCTAGTAACACCATCAAT+GGG 0.510907 3_2:-76371832 None:intergenic
TTAATTAGTTAGTTCCATGA+TGG 0.513698 3_2:-76372485 None:intergenic
CAGTTCAGGATGCCAGATAT+GGG 0.516112 3_2:+76372280 Msa0425940:CDS
CTGGGACTAAAACCCATTGA+TGG 0.518737 3_2:+76371820 Msa0425940:CDS
ACCCATTGATGGTGTTACTA+GGG 0.519807 3_2:+76371831 Msa0425940:CDS
AAATGGAAAACCTGGGGAAG+TGG 0.520651 3_2:-76370202 None:intergenic
AGCACAGCCTGAAGAGGAAG+AGG 0.523112 3_2:+76372345 Msa0425940:CDS
TCGGCGGCAGCGTCAATGAT+GGG 0.536510 3_2:-76370124 None:intergenic
GTCAAAAGCCAAGGCTGTCA+AGG 0.539706 3_2:+76372429 Msa0425940:CDS
ATATCCTTAGCCATGTCTCC+AGG 0.541939 3_2:+76370100 Msa0425940:exon
CGAAAAGCAATGTTGAAGCT+GGG 0.542413 3_2:+76371802 Msa0425940:CDS
CAAGAACAAACCACTTCCCC+AGG 0.549171 3_2:+76370192 Msa0425940:CDS
TCATTACCAGCTCAATGTCG+TGG 0.549319 3_2:-76372393 None:intergenic
CAACACTCAACACGTGCGAA+TGG 0.550402 3_2:-76370028 None:intergenic
AAGGCTCTCAAAACTCACAA+TGG 0.552612 3_2:+76372448 Msa0425940:CDS
GGACATTGTTGGTGCCATCA+TGG 0.557792 3_2:+76372471 Msa0425940:CDS
GCAGCGTCAATGATGGGACC+TGG 0.558575 3_2:-76370118 None:intergenic
GGAGGGAAGTTGTTGGTCGG+TGG 0.561823 3_2:-76370152 None:intergenic
GAACAAGGTGCTGCAGCTGA+TGG 0.562947 3_2:+76372322 Msa0425940:CDS
CATTCGCACGTGTTGAGTGT+TGG 0.564014 3_2:+76370029 Msa0425940:five_prime_UTR
AGCGTTGTTTCGTCGACGGA+GGG 0.566503 3_2:-76370169 None:intergenic
AGCTGGTAATGACACAAGCT+GGG 0.566806 3_2:+76372404 Msa0425940:CDS
GAGCGTTGTTTCGTCGACGG+AGG 0.566873 3_2:-76370170 None:intergenic
GTGGAGAGAGTGGTGAATGA+AGG 0.580814 3_2:+76369984 Msa0425940:five_prime_UTR
AGCTGGGGTGTCAAAAGCCA+AGG 0.583545 3_2:+76372420 Msa0425940:CDS
ACAATATGAACCATTTGATG+TGG 0.584048 3_2:+76369965 Msa0425940:five_prime_UTR
GGAGGCCCACGACATTGAGC+TGG 0.585026 3_2:+76372387 Msa0425940:CDS
ACAGCCTGAAGAGGAAGAGG+AGG 0.588386 3_2:+76372348 Msa0425940:CDS
GACGGAGGGAAGTTGTTGGT+CGG 0.592423 3_2:-76370155 None:intergenic
TTGGTCGGTGGCTTCGTCGG+CGG 0.592563 3_2:-76370140 None:intergenic
CATTACCAGCTCAATGTCGT+GGG 0.601311 3_2:-76372392 None:intergenic
TGATGGAGCACAGCCTGAAG+AGG 0.604282 3_2:+76372339 Msa0425940:CDS
AATGATGGGACCTGGAGACA+TGG 0.605793 3_2:-76370110 None:intergenic
AGAGACCTACGTTATATTTG+GGG 0.608062 3_2:+76372207 Msa0425940:CDS
GACCTACGTTATATTTGGGG+AGG 0.613942 3_2:+76372210 Msa0425940:CDS
GGGACCTGGAGACATGGCTA+AGG 0.621904 3_2:-76370104 None:intergenic
GGAGGTTGATGAAACTGGCG+TGG 0.623179 3_2:+76372366 Msa0425940:CDS
CGAGATGTAGGTGGTACTGA+AGG 0.629687 3_2:+76371748 Msa0425940:intron
TGACGACAAAGACGAATCTG+AGG 0.650663 3_2:+76370329 Msa0425940:CDS
AGATGATGCTCCTATTGTCG+AGG 0.659014 3_2:+76370296 Msa0425940:CDS
GGTTGATGAAACTGGCGTGG+AGG 0.659813 3_2:+76372369 Msa0425940:CDS
TGCCTCCCCAAATATAACGT+AGG 0.662269 3_2:-76372212 None:intergenic
ACCATTTGATGTGGAGAGAG+TGG 0.663331 3_2:+76369974 Msa0425940:five_prime_UTR
GCGAATGGATGAAAGAAATG+AGG 0.669534 3_2:-76370013 None:intergenic
GAAGACGACGAATCTCCTCA+AGG 0.684211 3_2:+76370357 Msa0425940:CDS
GGCTCTCAAAACTCACAATG+GGG 0.691219 3_2:+76372450 Msa0425940:CDS
ATAATGGCAAAACAAGAACA+AGG 0.704410 3_2:+76372307 Msa0425940:CDS
GCTGGTAATGACACAAGCTG+GGG 0.796663 3_2:+76372405 Msa0425940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTATTTAAATTAGTTA+GGG - chr3_2:76370926-76370945 None:intergenic 10.0%
!!! TTTTGTATTTAAATTAGTTA+GGG + chr3_2:76370926-76370945 Msa0425940:intron 10.0%
!! CAAAATAGAGAATAAATATA+TGG - chr3_2:76370239-76370258 None:intergenic 15.0%
!!! CATATATTTATTCTCTATTT+TGG + chr3_2:76370237-76370256 Msa0425940:intron 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG - chr3_2:76370927-76370946 None:intergenic 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG - chr3_2:76370925-76370944 None:intergenic 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG + chr3_2:76370925-76370944 Msa0425940:intron 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG + chr3_2:76370927-76370946 Msa0425940:intron 15.0%
!!! CAAGAATTCTAAAAAAATAA+AGG - chr3_2:76371073-76371092 None:intergenic 15.0%
!!! TCATTTTCTCAAAAATTTAT+GGG + chr3_2:76371239-76371258 Msa0425940:intron 15.0%
!!! TATTTTCTCAAATTATTGTT+GGG - chr3_2:76371384-76371403 None:intergenic 15.0%
!!! TATCTGTTGATTTATTTTTT+TGG + chr3_2:76371721-76371740 Msa0425940:intron 15.0%
!! GTATTATTAACATCGTTTAA+TGG + chr3_2:76370392-76370411 Msa0425940:intron 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG - chr3_2:76370928-76370947 None:intergenic 20.0%
!! ATTGAAATCCAAAGAAAATT+AGG + chr3_2:76370800-76370819 Msa0425940:intron 20.0%
!! TTGAAATCCAAAGAAAATTA+GGG + chr3_2:76370801-76370820 Msa0425940:intron 20.0%
!!! TTTAATTTTTTTTTTGGCCT+TGG + chr3_2:76370864-76370883 Msa0425940:intron 20.0%
!!! TTAATTTTTTTTTTGGCCTT+GGG + chr3_2:76370865-76370884 Msa0425940:intron 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG + chr3_2:76370928-76370947 Msa0425940:intron 20.0%
!!! ATCAAAGAGTTTTAAAAAGT+AGG - chr3_2:76371002-76371021 None:intergenic 20.0%
!!! GTCATTTTCTCAAAAATTTA+TGG + chr3_2:76371238-76371257 Msa0425940:intron 20.0%
!!! CTATTTTCTCAAATTATTGT+TGG - chr3_2:76371385-76371404 None:intergenic 20.0%
!! ATTGAAGATACATAAGAAAA+AGG - chr3_2:76371667-76371686 None:intergenic 20.0%
!! TAATTTCTTTATACCTTGTT+AGG + chr3_2:76372138-76372157 Msa0425940:intron 20.0%
! TCAAATGGTTCATATTGTTT+GGG - chr3_2:76369963-76369982 None:intergenic 25.0%
! ATCAAATGGTTCATATTGTT+TGG - chr3_2:76369964-76369983 None:intergenic 25.0%
!! TAATCTCTGTTTCTTTCTTT+CGG + chr3_2:76370061-76370080 Msa0425940:five_prime_UTR 25.0%
! AATAAATATATGGAATCCGA+TGG - chr3_2:76370229-76370248 None:intergenic 25.0%
!!! AACCTTAGCTTTTACTTTTT+AGG + chr3_2:76370691-76370710 Msa0425940:intron 25.0%
! TCTTTGGATTTCAATACTTA+GGG - chr3_2:76370795-76370814 None:intergenic 25.0%
! TTCTTTGGATTTCAATACTT+AGG - chr3_2:76370796-76370815 None:intergenic 25.0%
! TGAAATCCAAAGAAAATTAG+GGG + chr3_2:76370802-76370821 Msa0425940:intron 25.0%
!!! TAATTTTTTTTTTGGCCTTG+GGG + chr3_2:76370866-76370885 Msa0425940:intron 25.0%
! AATTCTTGTATTCTTGTTCT+GGG + chr3_2:76371085-76371104 Msa0425940:intron 25.0%
! AACTATAATCTATGTTGCAT+AGG - chr3_2:76371124-76371143 None:intergenic 25.0%
! CTATTCTCACATCATTATAA+AGG + chr3_2:76371486-76371505 Msa0425940:intron 25.0%
! ATGAAAAACATAACCTAACA+AGG - chr3_2:76372154-76372173 None:intergenic 25.0%
! TTAATTAGTTAGTTCCATGA+TGG - chr3_2:76372488-76372507 None:intergenic 25.0%
ACAATATGAACCATTTGATG+TGG + chr3_2:76369965-76369984 Msa0425940:five_prime_UTR 30.0%
GAAAGAAACAGAGATTAGAT+AGG - chr3_2:76370058-76370077 None:intergenic 30.0%
! AATCTCTGTTTCTTTCTTTC+GGG + chr3_2:76370062-76370081 Msa0425940:five_prime_UTR 30.0%
!!! CTGTTTTCTGTTTTTTCCTT+AGG + chr3_2:76370269-76370288 Msa0425940:intron 30.0%
TACTATAAGATTCTACCTTG+AGG - chr3_2:76370375-76370394 None:intergenic 30.0%
AGCCTAAAAAGTAAAAGCTA+AGG - chr3_2:76370696-76370715 None:intergenic 30.0%
! TTTAGGCTTAATTGCACTTT+TGG + chr3_2:76370708-76370727 Msa0425940:intron 30.0%
TTTGGATTTCAATACTTAGG+GGG - chr3_2:76370793-76370812 None:intergenic 30.0%
CTTTGGATTTCAATACTTAG+GGG - chr3_2:76370794-76370813 None:intergenic 30.0%
GAAATCCAAAGAAAATTAGG+GGG + chr3_2:76370803-76370822 Msa0425940:intron 30.0%
!!! AATTTTTTTTTTGGCCTTGG+GGG + chr3_2:76370867-76370886 Msa0425940:intron 30.0%
! TATTGAATCTTTGGCAGTTT+TGG - chr3_2:76370894-76370913 None:intergenic 30.0%
TGCCAAAGATTCAATACTTA+GGG + chr3_2:76370898-76370917 Msa0425940:intron 30.0%
GAATTCTTGTATTCTTGTTC+TGG + chr3_2:76371084-76371103 Msa0425940:intron 30.0%
TAATCTATGTTGCATAGGTA+CGG - chr3_2:76371119-76371138 None:intergenic 30.0%
GACAATGCAATTACATGTAT+CGG - chr3_2:76371221-76371240 None:intergenic 30.0%
!! AGAAAGTGTCACAAATTTCA+GGG + chr3_2:76371587-76371606 Msa0425940:intron 30.0%
ATGCACATTGTGATTTATCT+AGG - chr3_2:76371642-76371661 None:intergenic 30.0%
AATCAACAGATAACATCAGA+GGG - chr3_2:76371713-76371732 None:intergenic 30.0%
AAATCAACAGATAACATCAG+AGG - chr3_2:76371714-76371733 None:intergenic 30.0%
CGTAGAGGAATTTAAACTAA+TGG + chr3_2:76371906-76371925 Msa0425940:intron 30.0%
ATAATGGCAAAACAAGAACA+AGG + chr3_2:76372307-76372326 Msa0425940:CDS 30.0%
ATATGGAATCCGATGGAAAA+TGG - chr3_2:76370222-76370241 None:intergenic 35.0%
AGAACAAGGCATAGTACAAA+TGG - chr3_2:76370467-76370486 None:intergenic 35.0%
CAGGTTCTTGCAAGTAAAAT+CGG + chr3_2:76370506-76370525 Msa0425940:intron 35.0%
ATCAGGTATATATCTGGTAC+AGG - chr3_2:76370539-76370558 None:intergenic 35.0%
TATCGTACTTGGGTTTCTAT+TGG + chr3_2:76370570-76370589 Msa0425940:intron 35.0%
!!! GCAAGTTTTGAAAAGATAGG+GGG - chr3_2:76370734-76370753 None:intergenic 35.0%
!!! CGCAAGTTTTGAAAAGATAG+GGG - chr3_2:76370735-76370754 None:intergenic 35.0%
!!! CCGCAAGTTTTGAAAAGATA+GGG - chr3_2:76370736-76370755 None:intergenic 35.0%
! CCCTATCTTTTCAAAACTTG+CGG + chr3_2:76370733-76370752 Msa0425940:intron 35.0%
!!! ACCGCAAGTTTTGAAAAGAT+AGG - chr3_2:76370737-76370756 None:intergenic 35.0%
!!! ATTTTTTTTTTGGCCTTGGG+GGG + chr3_2:76370868-76370887 Msa0425940:intron 35.0%
CTGCCAAAGATTCAATACTT+AGG + chr3_2:76370897-76370916 Msa0425940:intron 35.0%
GCCAAAGATTCAATACTTAG+GGG + chr3_2:76370899-76370918 Msa0425940:intron 35.0%
CCAAAGATTCAATACTTAGG+GGG + chr3_2:76370900-76370919 Msa0425940:intron 35.0%
! AGTAGGCTTAATTGCACTTT+TGG - chr3_2:76370985-76371004 None:intergenic 35.0%
AATCTATGTTGCATAGGTAC+GGG - chr3_2:76371118-76371137 None:intergenic 35.0%
!!! TATCGGTTTTGTTTCAGTGT+CGG - chr3_2:76371204-76371223 None:intergenic 35.0%
AAAGATAACCTATGAAGCAC+GGG - chr3_2:76371276-76371295 None:intergenic 35.0%
CAAAGATAACCTATGAAGCA+CGG - chr3_2:76371277-76371296 None:intergenic 35.0%
CAGTGCTTCATAGATAAGAA+TGG - chr3_2:76371322-76371341 None:intergenic 35.0%
! GCAAAGTGCAATGCTAATTT+TGG + chr3_2:76371557-76371576 Msa0425940:intron 35.0%
!! CAGAAAGTGTCACAAATTTC+AGG + chr3_2:76371586-76371605 Msa0425940:intron 35.0%
GGTCATAGTTATGACCTATA+GGG + chr3_2:76371608-76371627 Msa0425940:intron 35.0%
!!! TTTTTTGGACTTCGAGATGT+AGG + chr3_2:76371736-76371755 Msa0425940:intron 35.0%
! AAGTCCAAAGTGCTATCAAA+TGG + chr3_2:76371955-76371974 Msa0425940:intron 35.0%
ATAACGTAGGTCTCTGAATT+TGG - chr3_2:76372202-76372221 None:intergenic 35.0%
TCAGAGACCTACGTTATATT+TGG + chr3_2:76372205-76372224 Msa0425940:CDS 35.0%
CAGAGACCTACGTTATATTT+GGG + chr3_2:76372206-76372225 Msa0425940:CDS 35.0%
AGAGACCTACGTTATATTTG+GGG + chr3_2:76372207-76372226 Msa0425940:CDS 35.0%
GCGAATGGATGAAAGAAATG+AGG - chr3_2:76370016-76370035 None:intergenic 40.0%
GATGGAAAATGGAAAACCTG+GGG - chr3_2:76370211-76370230 None:intergenic 40.0%
CGATGGAAAATGGAAAACCT+GGG - chr3_2:76370212-76370231 None:intergenic 40.0%
! CCAGGTTTTCCATTTTCCAT+CGG + chr3_2:76370210-76370229 Msa0425940:intron 40.0%
TCGTTATCATCCTCGACAAT+AGG - chr3_2:76370309-76370328 None:intergenic 40.0%
! TGTACTATGCCTTGTTCTAG+AGG + chr3_2:76370469-76370488 Msa0425940:intron 40.0%
! GTACTATGCCTTGTTCTAGA+GGG + chr3_2:76370470-76370489 Msa0425940:intron 40.0%
!! TACATGTACCCTCTAGAACA+AGG - chr3_2:76370481-76370500 None:intergenic 40.0%
! AGAGGGTACATGTAAAACTC+AGG + chr3_2:76370487-76370506 Msa0425940:intron 40.0%
ACGGGTATCAGGTATATATC+TGG - chr3_2:76370545-76370564 None:intergenic 40.0%
ACCCAAGTACGATACACATA+CGG - chr3_2:76370564-76370583 None:intergenic 40.0%
!! CCCCCTAAGTATTGAATCTT+TGG - chr3_2:76370903-76370922 None:intergenic 40.0%
!!! ACCGCAAGTTTTGGAAAGAT+AGG + chr3_2:76370956-76370975 Msa0425940:intron 40.0%
CCCTATCTTTCCAAAACTTG+CGG - chr3_2:76370960-76370979 None:intergenic 40.0%
!!! CCGCAAGTTTTGGAAAGATA+GGG + chr3_2:76370957-76370976 Msa0425940:intron 40.0%
!!! CGCAAGTTTTGGAAAGATAG+GGG + chr3_2:76370958-76370977 Msa0425940:intron 40.0%
!!! GCAAGTTTTGGAAAGATAGG+GGG + chr3_2:76370959-76370978 Msa0425940:intron 40.0%
!!! ATCGGTTTTGTTTCAGTGTC+GGG - chr3_2:76371203-76371222 None:intergenic 40.0%
GGGTCATAGTTATGACCTAT+AGG + chr3_2:76371607-76371626 Msa0425940:intron 40.0%
TCTAGGTCAAAAAGCCCTAT+AGG - chr3_2:76371625-76371644 None:intergenic 40.0%
TCGAAAAGCAATGTTGAAGC+TGG + chr3_2:76371801-76371820 Msa0425940:CDS 40.0%
CGAAAAGCAATGTTGAAGCT+GGG + chr3_2:76371802-76371821 Msa0425940:CDS 40.0%
!! AACCCATTGATGGTGTTACT+AGG + chr3_2:76371830-76371849 Msa0425940:CDS 40.0%
!! ACCCATTGATGGTGTTACTA+GGG + chr3_2:76371831-76371850 Msa0425940:CDS 40.0%
ACCCTAGTAACACCATCAAT+GGG - chr3_2:76371835-76371854 None:intergenic 40.0%
TACCCTAGTAACACCATCAA+TGG - chr3_2:76371836-76371855 None:intergenic 40.0%
CTGTTGTCAAATAGACGTAG+AGG + chr3_2:76371891-76371910 Msa0425940:intron 40.0%
GCTATTGTCATGTAGCACAA+TGG + chr3_2:76371989-76372008 Msa0425940:intron 40.0%
CACGTTCTTTCTGTGATCTA+TGG + chr3_2:76372094-76372113 Msa0425940:intron 40.0%
GTTCTTTCTGTGATCTATGG+TGG + chr3_2:76372097-76372116 Msa0425940:intron 40.0%
TTTGGACTCTTGAAGACATC+AGG - chr3_2:76372184-76372203 None:intergenic 40.0%
ATTTGGGGAGGCAAAAATAG+AGG + chr3_2:76372222-76372241 Msa0425940:CDS 40.0%
GCCAGATATGGGATCTATAA+TGG + chr3_2:76372291-76372310 Msa0425940:CDS 40.0%
GCCATTATAGATCCCATATC+TGG - chr3_2:76372295-76372314 None:intergenic 40.0%
AAGGCTCTCAAAACTCACAA+TGG + chr3_2:76372448-76372467 Msa0425940:CDS 40.0%
AGGCTCTCAAAACTCACAAT+GGG + chr3_2:76372449-76372468 Msa0425940:CDS 40.0%
ACCATTTGATGTGGAGAGAG+TGG + chr3_2:76369974-76369993 Msa0425940:five_prime_UTR 45.0%
ACCACTCTCTCCACATCAAA+TGG - chr3_2:76369978-76369997 None:intergenic 45.0%
ATATCCTTAGCCATGTCTCC+AGG + chr3_2:76370100-76370119 Msa0425940:exon 45.0%
AAATGGAAAACCTGGGGAAG+TGG - chr3_2:76370205-76370224 None:intergenic 45.0%
CCGATGGAAAATGGAAAACC+TGG - chr3_2:76370213-76370232 None:intergenic 45.0%
! GGAGCATCATCTTCTTCCTA+AGG - chr3_2:76370288-76370307 None:intergenic 45.0%
AGATGATGCTCCTATTGTCG+AGG + chr3_2:76370296-76370315 Msa0425940:CDS 45.0%
TGACGACAAAGACGAATCTG+AGG + chr3_2:76370329-76370348 Msa0425940:CDS 45.0%
ACGATACACATACGGGTATC+AGG - chr3_2:76370556-76370575 None:intergenic 45.0%
ACCCGTATGTGTATCGTACT+TGG + chr3_2:76370559-76370578 Msa0425940:intron 45.0%
CCCAAGTACGATACACATAC+GGG - chr3_2:76370563-76370582 None:intergenic 45.0%
CCCGTATGTGTATCGTACTT+GGG + chr3_2:76370560-76370579 Msa0425940:intron 45.0%
! GTCAGCCCCCTAATTTTCTT+TGG - chr3_2:76370811-76370830 None:intergenic 45.0%
TGACACGTGCACCTCATTTA+GGG - chr3_2:76370840-76370859 None:intergenic 45.0%
ATGACACGTGCACCTCATTT+AGG - chr3_2:76370841-76370860 None:intergenic 45.0%
ATTGACACGTGTCGAACAAC+GGG - chr3_2:76371179-76371198 None:intergenic 45.0%
CATTGACACGTGTCGAACAA+CGG - chr3_2:76371180-76371199 None:intergenic 45.0%
TGTCTGTGTCATGTTGCTGT+CGG + chr3_2:76371413-76371432 Msa0425940:intron 45.0%
! TCAGAGGGCACACATGTATA+TGG - chr3_2:76371698-76371717 None:intergenic 45.0%
TTTGGACTTCGAGATGTAGG+TGG + chr3_2:76371739-76371758 Msa0425940:intron 45.0%
CTGGGACTAAAACCCATTGA+TGG + chr3_2:76371820-76371839 Msa0425940:CDS 45.0%
! GACGCCATTTGATAGCACTT+TGG - chr3_2:76371962-76371981 None:intergenic 45.0%
TCACGAATCGCGAAAGATAG+TGG - chr3_2:76372027-76372046 None:intergenic 45.0%
!! TCTGTGATCTATGGTGGATG+AGG + chr3_2:76372103-76372122 Msa0425940:intron 45.0%
GACCTACGTTATATTTGGGG+AGG + chr3_2:76372210-76372229 Msa0425940:CDS 45.0%
TGCCTCCCCAAATATAACGT+AGG - chr3_2:76372215-76372234 None:intergenic 45.0%
ACAGTTCAGGATGCCAGATA+TGG + chr3_2:76372279-76372298 Msa0425940:CDS 45.0%
CAGTTCAGGATGCCAGATAT+GGG + chr3_2:76372280-76372299 Msa0425940:CDS 45.0%
!! GAAGAGGAGGTTGATGAAAC+TGG + chr3_2:76372361-76372380 Msa0425940:CDS 45.0%
CATTACCAGCTCAATGTCGT+GGG - chr3_2:76372395-76372414 None:intergenic 45.0%
TCATTACCAGCTCAATGTCG+TGG - chr3_2:76372396-76372415 None:intergenic 45.0%
! AGCTGGTAATGACACAAGCT+GGG + chr3_2:76372404-76372423 Msa0425940:CDS 45.0%
GGCTCTCAAAACTCACAATG+GGG + chr3_2:76372450-76372469 Msa0425940:CDS 45.0%
ACTCACAATGGGGACATTGT+TGG + chr3_2:76372460-76372479 Msa0425940:CDS 45.0%
!!! CATTTTTTTAATTTTTTTTT+TGG + chr3_2:76370858-76370877 Msa0425940:intron 5.0%
GTGGAGAGAGTGGTGAATGA+AGG + chr3_2:76369984-76370003 Msa0425940:five_prime_UTR 50.0%
CAACACTCAACACGTGCGAA+TGG - chr3_2:76370031-76370050 None:intergenic 50.0%
CATTCGCACGTGTTGAGTGT+TGG + chr3_2:76370029-76370048 Msa0425940:five_prime_UTR 50.0%
! AATGATGGGACCTGGAGACA+TGG - chr3_2:76370113-76370132 None:intergenic 50.0%
! CTTGAGCGTTGTTTCGTCGA+CGG - chr3_2:76370176-76370195 None:intergenic 50.0%
CAAGAACAAACCACTTCCCC+AGG + chr3_2:76370192-76370211 Msa0425940:CDS 50.0%
GAAGACGACGAATCTCCTCA+AGG + chr3_2:76370357-76370376 Msa0425940:CDS 50.0%
AGAAAATTAGGGGGCTGACG+TGG + chr3_2:76370812-76370831 Msa0425940:intron 50.0%
TGTCTTTGCCCGTGCTTCAT+AGG + chr3_2:76371265-76371284 Msa0425940:intron 50.0%
GTCATGTTGCTGTCGGACAT+TGG + chr3_2:76371420-76371439 Msa0425940:intron 50.0%
! CGAGATGTAGGTGGTACTGA+AGG + chr3_2:76371748-76371767 Msa0425940:intron 50.0%
TTCGCGATTCGTGATCGACA+AGG + chr3_2:76372033-76372052 Msa0425940:intron 50.0%
!! GTGATCTATGGTGGATGAGG+AGG + chr3_2:76372106-76372125 Msa0425940:intron 50.0%
CACAAGCTGCTCAACAGTTC+AGG + chr3_2:76372266-76372285 Msa0425940:CDS 50.0%
TCAACCTCCTCTTCCTCTTC+AGG - chr3_2:76372355-76372374 None:intergenic 50.0%
! GAGCTGGTAATGACACAAGC+TGG + chr3_2:76372403-76372422 Msa0425940:CDS 50.0%
! GCTGGTAATGACACAAGCTG+GGG + chr3_2:76372405-76372424 Msa0425940:CDS 50.0%
GTCAAAAGCCAAGGCTGTCA+AGG + chr3_2:76372429-76372448 Msa0425940:CDS 50.0%
TTTGAGAGCCTTGACAGCCT+TGG - chr3_2:76372440-76372459 None:intergenic 50.0%
!! GGACATTGTTGGTGCCATCA+TGG + chr3_2:76372471-76372490 Msa0425940:CDS 50.0%
TTGTTGGTCGGTGGCTTCGT+CGG - chr3_2:76370146-76370165 None:intergenic 55.0%
GACGGAGGGAAGTTGTTGGT+CGG - chr3_2:76370158-76370177 None:intergenic 55.0%
! AGCGTTGTTTCGTCGACGGA+GGG - chr3_2:76370172-76370191 None:intergenic 55.0%
CTGACGTGGCACCCTAAATG+AGG + chr3_2:76370826-76370845 Msa0425940:intron 55.0%
! GGGGCTGTAACCGCAAGTTT+TGG + chr3_2:76370947-76370966 Msa0425940:intron 55.0%
GTTGCTGTCGGACATTGGCA+CGG + chr3_2:76371425-76371444 Msa0425940:intron 55.0%
GTGTCTGCAACTGAGAGCTC+AGG - chr3_2:76372249-76372268 None:intergenic 55.0%
!! GAACAAGGTGCTGCAGCTGA+TGG + chr3_2:76372322-76372341 Msa0425940:CDS 55.0%
TGATGGAGCACAGCCTGAAG+AGG + chr3_2:76372339-76372358 Msa0425940:CDS 55.0%
AGCACAGCCTGAAGAGGAAG+AGG + chr3_2:76372345-76372364 Msa0425940:CDS 55.0%
ACAGCCTGAAGAGGAAGAGG+AGG + chr3_2:76372348-76372367 Msa0425940:CDS 55.0%
!! GGAGGTTGATGAAACTGGCG+TGG + chr3_2:76372366-76372385 Msa0425940:CDS 55.0%
!! GGTTGATGAAACTGGCGTGG+AGG + chr3_2:76372369-76372388 Msa0425940:CDS 55.0%
! AGCTGGGGTGTCAAAAGCCA+AGG + chr3_2:76372420-76372439 Msa0425940:CDS 55.0%
GGGACCTGGAGACATGGCTA+AGG - chr3_2:76370107-76370126 None:intergenic 60.0%
! GCAGCGTCAATGATGGGACC+TGG - chr3_2:76370121-76370140 None:intergenic 60.0%
TCGGCGGCAGCGTCAATGAT+GGG - chr3_2:76370127-76370146 None:intergenic 60.0%
GGAGGGAAGTTGTTGGTCGG+TGG - chr3_2:76370155-76370174 None:intergenic 60.0%
CGTCGACGGAGGGAAGTTGT+TGG - chr3_2:76370162-76370181 None:intergenic 60.0%
! GAGCGTTGTTTCGTCGACGG+AGG - chr3_2:76370173-76370192 None:intergenic 60.0%
!! TTGGCAGTTTTGGCCCCCCA+AGG - chr3_2:76370884-76370903 None:intergenic 60.0%
GTCGGCGGCAGCGTCAATGA+TGG - chr3_2:76370128-76370147 None:intergenic 65.0%
TTGGTCGGTGGCTTCGTCGG+CGG - chr3_2:76370143-76370162 None:intergenic 65.0%
GGAGGCCCACGACATTGAGC+TGG + chr3_2:76372387-76372406 Msa0425940:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 76369946 76372507 76369946 ID=Msa0425940;Name=Msa0425940
chr3_2 mRNA 76369946 76372507 76369946 ID=Msa0425940-mRNA-1;Parent=Msa0425940;Name=Msa0425940-mRNA-1;_AED=0.33;_eAED=0.33;_QI=166|0.66|0.5|1|1|1|4|0|210
chr3_2 exon 76369946 76370213 76369946 ID=Msa0425940-mRNA-1:exon:19679;Parent=Msa0425940-mRNA-1
chr3_2 exon 76370291 76370378 76370291 ID=Msa0425940-mRNA-1:exon:19680;Parent=Msa0425940-mRNA-1
chr3_2 exon 76371758 76371852 76371758 ID=Msa0425940-mRNA-1:exon:19681;Parent=Msa0425940-mRNA-1
chr3_2 exon 76372160 76372507 76372160 ID=Msa0425940-mRNA-1:exon:19682;Parent=Msa0425940-mRNA-1
chr3_2 five_prime_UTR 76369946 76370111 76369946 ID=Msa0425940-mRNA-1:five_prime_utr;Parent=Msa0425940-mRNA-1
chr3_2 CDS 76370112 76370213 76370112 ID=Msa0425940-mRNA-1:cds;Parent=Msa0425940-mRNA-1
chr3_2 CDS 76370291 76370378 76370291 ID=Msa0425940-mRNA-1:cds;Parent=Msa0425940-mRNA-1
chr3_2 CDS 76371758 76371852 76371758 ID=Msa0425940-mRNA-1:cds;Parent=Msa0425940-mRNA-1
chr3_2 CDS 76372160 76372507 76372160 ID=Msa0425940-mRNA-1:cds;Parent=Msa0425940-mRNA-1
Gene Sequence

>Msa0425940

ATGTCTCCAGGTCCCATCATTGACGCTGCCGCCGACGAAGCCACCGACCAACAACTTCCCTCCGTCGACGAAACAACGCTCAAGAACAAACCACTTCCCCAGGAAGAAGATGATGCTCCTATTGTCGAGGATGATAACGATGACGACAAAGACGAATCTGAGGACGAAGAAGACGACGAATCTCCTCAAGGTGGTACTGAAGGTTCAAAGCAAAGCAGAAGTGAGAAGAAGAGTCGAAAAGCAATGTTGAAGCTGGGACTAAAACCCATTGATGGTGTTACTAGGGTTATGTTTTTCATCTCGAAACCTGATGTCTTCAAGAGTCCAAATTCAGAGACCTACGTTATATTTGGGGAGGCAAAAATAGAGGACCTGAGCTCTCAGTTGCAGACACAAGCTGCTCAACAGTTCAGGATGCCAGATATGGGATCTATAATGGCAAAACAAGAACAAGGTGCTGCAGCTGATGGAGCACAGCCTGAAGAGGAAGAGGAGGTTGATGAAACTGGCGTGGAGGCCCACGACATTGAGCTGGTAATGACACAAGCTGGGGTGTCAAAAGCCAAGGCTGTCAAGGCTCTCAAAACTCACAATGGGGACATTGTTGGTGCCATCATGGAACTAACTAATTAA

Protein sequence

>Msa0425940

MSPGPIIDAAADEATDQQLPSVDETTLKNKPLPQEEDDAPIVEDDNDDDKDESEDEEDDESPQGGTEGSKQSRSEKKSRKAMLKLGLKPIDGVTRVMFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQTQAAQQFRMPDMGSIMAKQEQGAAADGAQPEEEEEVDETGVEAHDIELVMTQAGVSKAKAVKALKTHNGDIVGAIMELTN*