Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370770 | XP_013460973.1 | 95.636 | 275 | 12 | 0 | 1 | 275 | 1 | 275 | 0.0 | 557 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370770 | sp|P25803|CYSEP_PHAVU | 81.455 | 275 | 51 | 0 | 1 | 275 | 1 | 275 | 7.89e-170 | 477 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370770 | G8A2F7 | 95.636 | 275 | 12 | 0 | 1 | 275 | 1 | 275 | 0.0 | 557 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0106620 | Msa0370770 | 0.802356 | 5.831378e-49 | -8.615850e-47 |
| Msa0370770 | Msa0418930 | 0.879303 | 1.391419e-69 | -8.615850e-47 |
| Msa0370770 | Msa0432160 | 0.800751 | 1.244113e-48 | -8.615850e-47 |
| Msa0370770 | Msa0521010 | 0.800927 | 1.145674e-48 | -8.615850e-47 |
| Msa0370770 | Msa0626270 | 0.805286 | 1.436152e-49 | -8.615850e-47 |
| Msa0370770 | Msa0664540 | 0.815927 | 7.192272e-52 | -8.615850e-47 |
| Msa0370770 | Msa0855870 | 0.808224 | 3.440086e-50 | -8.615850e-47 |
| Msa0370770 | Msa0933760 | 0.807421 | 5.095740e-50 | -8.615850e-47 |
| Msa0370770 | Msa0971650 | 0.804140 | 2.491443e-49 | -8.615850e-47 |
| Msa0370770 | Msa1435360 | 0.825145 | 5.497925e-54 | -8.615850e-47 |
| Msa0263920 | Msa0370770 | 0.819411 | 1.177888e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370770 | MtrunA17_Chr3g0116551 | 95.636 | 275 | 12 | 0 | 1 | 275 | 1 | 275 | 0.0 | 557 |
| Msa0370770 | MtrunA17_Chr4g0058081 | 76.000 | 275 | 65 | 1 | 1 | 275 | 1 | 274 | 1.01e-161 | 454 |
| Msa0370770 | MtrunA17_Chr3g0144281 | 49.635 | 274 | 128 | 4 | 7 | 274 | 9 | 278 | 4.92e-86 | 261 |
| Msa0370770 | MtrunA17_Chr4g0053311 | 48.881 | 268 | 124 | 3 | 8 | 273 | 14 | 270 | 5.99e-86 | 261 |
| Msa0370770 | MtrunA17_Chr2g0315491 | 50.549 | 273 | 120 | 7 | 6 | 273 | 7 | 269 | 6.21e-85 | 258 |
| Msa0370770 | MtrunA17_Chr3g0134231 | 50.179 | 279 | 128 | 6 | 6 | 273 | 12 | 290 | 6.23e-85 | 262 |
| Msa0370770 | MtrunA17_Chr4g0041481 | 55.144 | 243 | 99 | 6 | 35 | 274 | 35 | 270 | 3.35e-84 | 256 |
| Msa0370770 | MtrunA17_Chr4g0041521 | 54.321 | 243 | 101 | 6 | 35 | 274 | 35 | 270 | 2.93e-83 | 254 |
| Msa0370770 | MtrunA17_Chr5g0405751 | 52.016 | 248 | 105 | 6 | 33 | 273 | 32 | 272 | 1.02e-82 | 252 |
| Msa0370770 | MtrunA17_Chr4g0041061 | 48.201 | 278 | 134 | 7 | 1 | 273 | 1 | 273 | 2.21e-82 | 251 |
| Msa0370770 | MtrunA17_Chr1g0208261 | 51.383 | 253 | 120 | 3 | 23 | 273 | 73 | 324 | 4.15e-82 | 256 |
| Msa0370770 | MtrunA17_Chr4g0024411 | 54.733 | 243 | 99 | 7 | 38 | 273 | 33 | 271 | 6.56e-82 | 250 |
| Msa0370770 | MtrunA17_Chr4g0060251 | 46.099 | 282 | 134 | 7 | 1 | 273 | 1 | 273 | 1.32e-81 | 249 |
| Msa0370770 | MtrunA17_Chr4g0040881 | 51.200 | 250 | 113 | 6 | 28 | 273 | 29 | 273 | 1.50e-81 | 249 |
| Msa0370770 | MtrunA17_Chr4g0041081 | 49.606 | 254 | 111 | 6 | 28 | 273 | 29 | 273 | 9.92e-81 | 247 |
| Msa0370770 | MtrunA17_Chr4g0040851 | 45.620 | 274 | 136 | 4 | 6 | 275 | 27 | 291 | 5.68e-78 | 241 |
| Msa0370770 | MtrunA17_Chr2g0325121 | 45.455 | 275 | 138 | 4 | 3 | 275 | 4 | 268 | 2.17e-77 | 238 |
| Msa0370770 | MtrunA17_Chr4g0041471 | 49.789 | 237 | 115 | 3 | 40 | 274 | 37 | 271 | 3.63e-76 | 236 |
| Msa0370770 | MtrunA17_Chr1g0153011 | 45.818 | 275 | 123 | 6 | 6 | 273 | 16 | 271 | 2.15e-71 | 227 |
| Msa0370770 | MtrunA17_Chr2g0319991 | 43.494 | 269 | 141 | 5 | 10 | 274 | 12 | 273 | 2.71e-69 | 218 |
| Msa0370770 | MtrunA17_Chr3g0142071 | 45.607 | 239 | 128 | 2 | 39 | 275 | 49 | 287 | 2.36e-63 | 206 |
| Msa0370770 | MtrunA17_Chr7g0248391 | 42.913 | 254 | 128 | 7 | 25 | 274 | 27 | 267 | 6.80e-60 | 194 |
| Msa0370770 | MtrunA17_Chr7g0248811 | 40.590 | 271 | 146 | 7 | 7 | 274 | 7 | 265 | 6.06e-58 | 189 |
| Msa0370770 | MtrunA17_Chr2g0283901 | 43.548 | 248 | 128 | 8 | 32 | 274 | 43 | 283 | 1.02e-57 | 192 |
| Msa0370770 | MtrunA17_Chr8g0379151 | 42.446 | 278 | 141 | 9 | 6 | 274 | 30 | 297 | 1.62e-54 | 181 |
| Msa0370770 | MtrunA17_Chr4g0070441 | 44.395 | 223 | 113 | 5 | 53 | 273 | 65 | 278 | 1.25e-50 | 170 |
| Msa0370770 | MtrunA17_Chr0c27g0493921 | 44.395 | 223 | 113 | 5 | 53 | 273 | 65 | 278 | 1.92e-50 | 169 |
| Msa0370770 | MtrunA17_Chr1g0155781 | 41.364 | 220 | 115 | 4 | 54 | 265 | 66 | 279 | 7.46e-48 | 163 |
| Msa0370770 | MtrunA17_Chr2g0283741 | 38.583 | 254 | 143 | 8 | 27 | 275 | 41 | 286 | 1.66e-47 | 162 |
| Msa0370770 | MtrunA17_Chr2g0283751 | 36.177 | 293 | 151 | 13 | 6 | 276 | 10 | 288 | 1.82e-43 | 150 |
| Msa0370770 | MtrunA17_Chr4g0035551 | 38.009 | 221 | 121 | 4 | 54 | 265 | 63 | 276 | 3.39e-43 | 151 |
| Msa0370770 | MtrunA17_Chr2g0311471 | 42.523 | 214 | 114 | 6 | 55 | 263 | 52 | 261 | 5.38e-43 | 150 |
| Msa0370770 | MtrunA17_Chr2g0311381 | 40.551 | 254 | 116 | 12 | 40 | 273 | 36 | 274 | 2.61e-42 | 148 |
| Msa0370770 | MtrunA17_Chr2g0311391 | 35.452 | 299 | 148 | 11 | 4 | 265 | 2 | 292 | 2.37e-39 | 141 |
| Msa0370770 | MtrunA17_Chr1g0199131 | 30.534 | 262 | 161 | 5 | 15 | 265 | 34 | 285 | 3.47e-38 | 138 |
| Msa0370770 | MtrunA17_Chr2g0283671 | 52.414 | 145 | 66 | 3 | 129 | 273 | 15 | 156 | 9.37e-38 | 133 |
| Msa0370770 | MtrunA17_Chr1g0156161 | 42.857 | 147 | 78 | 4 | 127 | 271 | 48 | 190 | 2.51e-31 | 117 |
| Msa0370770 | MtrunA17_Chr7g0248421 | 52.000 | 125 | 53 | 4 | 152 | 274 | 57 | 176 | 1.62e-30 | 114 |
| Msa0370770 | MtrunA17_Chr4g0036731 | 30.182 | 275 | 151 | 5 | 1 | 265 | 1 | 244 | 1.88e-28 | 111 |
| Msa0370770 | MtrunA17_Chr4g0036281 | 33.803 | 213 | 109 | 5 | 54 | 265 | 63 | 244 | 7.03e-28 | 109 |
| Msa0370770 | MtrunA17_Chr4g0037291 | 33.803 | 213 | 109 | 5 | 54 | 265 | 104 | 285 | 9.49e-28 | 110 |
| Msa0370770 | MtrunA17_Chr2g0311091 | 39.259 | 135 | 71 | 2 | 55 | 178 | 50 | 184 | 1.45e-25 | 100 |
| Msa0370770 | MtrunA17_Chr1g0156771 | 47.525 | 101 | 49 | 3 | 127 | 224 | 54 | 153 | 2.51e-24 | 96.3 |
| Msa0370770 | MtrunA17_Chr2g0283661 | 35.032 | 157 | 93 | 5 | 32 | 181 | 25 | 179 | 1.38e-20 | 89.0 |
| Msa0370770 | MtrunA17_Chr8g0379671 | 41.304 | 92 | 52 | 2 | 169 | 260 | 23 | 112 | 1.61e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370770 | AT5G50260.1 | 69.118 | 272 | 84 | 0 | 4 | 275 | 2 | 273 | 5.32e-146 | 414 |
| Msa0370770 | AT3G48340.1 | 66.788 | 274 | 89 | 1 | 4 | 275 | 2 | 275 | 5.61e-139 | 396 |
| Msa0370770 | AT3G48350.2 | 63.869 | 274 | 98 | 1 | 4 | 276 | 2 | 275 | 2.56e-134 | 382 |
| Msa0370770 | AT3G48350.1 | 63.736 | 273 | 98 | 1 | 4 | 275 | 2 | 274 | 4.19e-132 | 379 |
| Msa0370770 | AT4G35350.2 | 49.470 | 283 | 134 | 3 | 3 | 279 | 9 | 288 | 1.79e-89 | 268 |
| Msa0370770 | AT1G20850.1 | 53.386 | 251 | 114 | 2 | 25 | 274 | 36 | 284 | 1.77e-88 | 268 |
| Msa0370770 | AT4G35350.1 | 49.819 | 277 | 130 | 3 | 3 | 273 | 9 | 282 | 1.26e-87 | 266 |
| Msa0370770 | AT1G47128.1 | 45.985 | 274 | 138 | 3 | 6 | 273 | 13 | 282 | 9.22e-80 | 249 |
| Msa0370770 | AT5G43060.1 | 46.237 | 279 | 135 | 4 | 6 | 274 | 11 | 284 | 1.29e-79 | 248 |
| Msa0370770 | AT3G19390.1 | 45.487 | 277 | 143 | 5 | 1 | 274 | 5 | 276 | 1.05e-78 | 246 |
| Msa0370770 | AT5G45890.1 | 46.014 | 276 | 131 | 7 | 11 | 274 | 6 | 275 | 6.17e-78 | 241 |
| Msa0370770 | AT4G36880.1 | 48.000 | 250 | 122 | 3 | 32 | 273 | 41 | 290 | 2.69e-76 | 237 |
| Msa0370770 | AT3G19400.2 | 49.187 | 246 | 116 | 6 | 39 | 279 | 43 | 284 | 8.09e-74 | 228 |
| Msa0370770 | AT1G06260.1 | 44.803 | 279 | 139 | 6 | 1 | 274 | 5 | 273 | 2.41e-72 | 226 |
| Msa0370770 | AT3G19400.1 | 50.000 | 240 | 111 | 6 | 39 | 273 | 43 | 278 | 1.00e-71 | 225 |
| Msa0370770 | AT4G11310.1 | 42.254 | 284 | 146 | 7 | 3 | 273 | 4 | 282 | 2.21e-67 | 214 |
| Msa0370770 | AT4G11320.2 | 42.049 | 283 | 143 | 7 | 6 | 273 | 13 | 289 | 3.08e-65 | 209 |
| Msa0370770 | AT4G11320.1 | 42.049 | 283 | 143 | 7 | 6 | 273 | 13 | 289 | 3.08e-65 | 209 |
| Msa0370770 | AT1G09850.1 | 46.862 | 239 | 121 | 3 | 38 | 274 | 30 | 264 | 4.03e-65 | 210 |
| Msa0370770 | AT2G27420.1 | 43.165 | 278 | 141 | 6 | 6 | 274 | 8 | 277 | 3.73e-64 | 205 |
| Msa0370770 | AT3G49340.1 | 42.222 | 270 | 149 | 5 | 9 | 274 | 4 | 270 | 6.68e-64 | 204 |
| Msa0370770 | AT4G23520.1 | 44.351 | 239 | 124 | 5 | 39 | 273 | 46 | 279 | 1.47e-62 | 201 |
| Msa0370770 | AT1G29090.1 | 42.907 | 289 | 135 | 10 | 1 | 274 | 10 | 283 | 1.10e-60 | 196 |
| Msa0370770 | AT2G34080.1 | 41.455 | 275 | 150 | 6 | 6 | 274 | 5 | 274 | 8.85e-60 | 194 |
| Msa0370770 | AT3G43960.1 | 45.228 | 241 | 119 | 9 | 39 | 271 | 40 | 275 | 1.85e-59 | 194 |
| Msa0370770 | AT1G29080.1 | 38.571 | 280 | 160 | 7 | 1 | 274 | 1 | 274 | 1.21e-55 | 183 |
| Msa0370770 | AT5G60360.1 | 41.204 | 216 | 117 | 4 | 51 | 264 | 71 | 278 | 3.60e-46 | 159 |
| Msa0370770 | AT5G60360.2 | 41.204 | 216 | 117 | 4 | 51 | 264 | 71 | 278 | 3.67e-46 | 159 |
| Msa0370770 | AT5G60360.3 | 41.204 | 216 | 117 | 4 | 51 | 264 | 71 | 278 | 5.59e-46 | 159 |
| Msa0370770 | AT2G21430.1 | 33.942 | 274 | 160 | 6 | 5 | 265 | 12 | 277 | 1.60e-45 | 157 |
| Msa0370770 | AT1G29110.1 | 37.652 | 247 | 135 | 5 | 32 | 273 | 30 | 262 | 3.32e-45 | 156 |
| Msa0370770 | AT3G45310.1 | 40.529 | 227 | 120 | 6 | 51 | 273 | 71 | 286 | 5.91e-45 | 156 |
| Msa0370770 | AT3G45310.2 | 40.529 | 227 | 120 | 6 | 51 | 273 | 71 | 286 | 6.42e-45 | 155 |
| Msa0370770 | AT4G39090.1 | 38.288 | 222 | 122 | 4 | 54 | 266 | 66 | 281 | 3.14e-43 | 151 |
| Msa0370770 | AT3G54940.2 | 38.182 | 220 | 124 | 4 | 54 | 265 | 66 | 281 | 2.65e-41 | 146 |
| Msa0370770 | AT3G54940.3 | 38.140 | 215 | 121 | 4 | 54 | 260 | 66 | 276 | 1.41e-40 | 142 |
| Msa0370770 | AT4G16190.1 | 38.914 | 221 | 119 | 6 | 55 | 265 | 71 | 285 | 3.70e-38 | 138 |
| Msa0370770 | AT2G22160.1 | 46.465 | 99 | 49 | 1 | 53 | 151 | 8 | 102 | 3.99e-21 | 86.3 |
| Msa0370770 | AT1G02305.1 | 30.286 | 175 | 117 | 5 | 50 | 222 | 33 | 204 | 3.18e-12 | 66.6 |
Find 76 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAACCTATCTGTCTTTATT+TGG | 0.189761 | 3_1:+68671733 | None:intergenic |
| TTTGAGTACATTAAGCAAAA+AGG | 0.295259 | 3_1:-68671630 | Msa0370770:CDS |
| ATCAGATCCTCCGGCATCTA+TGG | 0.300046 | 3_1:+68671349 | None:intergenic |
| AGTTTCCATGTTTCTTTGTT+TGG | 0.301765 | 3_1:+68672594 | None:intergenic |
| TTGGAAGCAATTCACTTGTT+TGG | 0.302311 | 3_1:+68672613 | None:intergenic |
| ACATGACCAACCATGAATTT+AGG | 0.309976 | 3_1:-68672315 | Msa0370770:CDS |
| TGTCCACAACACCAACAAAA+TGG | 0.326241 | 3_1:-68672374 | Msa0370770:CDS |
| CTGAGGACACATCTTTATCT+TGG | 0.332566 | 3_1:+68672506 | None:intergenic |
| AAGCTCCTGCTTCTGTTGAT+TGG | 0.348923 | 3_1:-68672201 | Msa0370770:CDS |
| GCATCTATGGCTACGGATAC+AGG | 0.385812 | 3_1:+68671362 | None:intergenic |
| TCAACTGTTGTAGCTGTTGA+AGG | 0.388321 | 3_1:-68671762 | Msa0370770:CDS |
| TTGTTAAGTTTCAACTTGTA+AGG | 0.389898 | 3_1:+68672346 | None:intergenic |
| AGGATGCAATGGTGGGCTAA+TGG | 0.392108 | 3_1:-68671661 | Msa0370770:CDS |
| GATCCATCATTTGCTGTGTA+AGG | 0.397020 | 3_1:+68671582 | None:intergenic |
| CACTTCCACGTGGCGTGCCT+CGG | 0.411657 | 3_1:+68672251 | None:intergenic |
| GATTGTTCTGTCCATTGCTT+TGG | 0.412192 | 3_1:-68672557 | Msa0370770:CDS |
| ATCAACAGAAGCAGGAGCTT+TGG | 0.419799 | 3_1:+68672204 | None:intergenic |
| TGTATTAATTGAATGGAAGT+TGG | 0.428819 | 3_1:+68672638 | None:intergenic |
| TGACCATCAATTGACACAGC+TGG | 0.433204 | 3_1:+68671440 | None:intergenic |
| TGATGGTCATGAGACTGTTC+CGG | 0.449890 | 3_1:-68671426 | Msa0370770:CDS |
| GGAGTCACCACACGGTTTCT+CGG | 0.450148 | 3_1:-68672450 | Msa0370770:CDS |
| GCAGGGGACTGTTTATATAG+AGG | 0.454291 | 3_1:+68672676 | None:intergenic |
| TTTGGAATGTATTAATTGAA+TGG | 0.454640 | 3_1:+68672631 | None:intergenic |
| GTCCCAGCTGTGTCAATTGA+TGG | 0.458384 | 3_1:-68671443 | Msa0370770:CDS |
| CGAGGCACGCCACGTGGAAG+TGG | 0.460548 | 3_1:-68672250 | Msa0370770:CDS |
| TAAACCAAATAAAGACAGAT+AGG | 0.464117 | 3_1:-68671737 | Msa0370770:CDS |
| TTCCTCCAATCAACAGAAGC+AGG | 0.475830 | 3_1:+68672196 | None:intergenic |
| CATAGGTAGTCCTAAATTCA+TGG | 0.476124 | 3_1:+68672305 | None:intergenic |
| CTCCTGCTTCTGTTGATTGG+AGG | 0.481655 | 3_1:-68672198 | Msa0370770:CDS |
| GGACTGTTTATATAGAGGAT+TGG | 0.494115 | 3_1:+68672681 | None:intergenic |
| GTCACTGAGGTCAAGGATCA+AGG | 0.495703 | 3_1:-68672163 | Msa0370770:CDS |
| TGGATGGAAAGGGAAAGAGC+AGG | 0.508669 | 3_1:+68672658 | None:intergenic |
| TGAATGGAAGTTGGATGGAA+AGG | 0.510016 | 3_1:+68672647 | None:intergenic |
| TACCCTTACACAGCAAATGA+TGG | 0.512248 | 3_1:-68671585 | Msa0370770:CDS |
| GAATGGAAGTTGGATGGAAA+GGG | 0.512638 | 3_1:+68672648 | None:intergenic |
| GAATTTAGGACTACCTATGC+TGG | 0.513702 | 3_1:-68672301 | Msa0370770:CDS |
| GTCCTCAGACAAAAGCTTGT+GGG | 0.513806 | 3_1:-68672491 | Msa0370770:CDS |
| TTATATAGAGGATTGGAGAA+AGG | 0.514545 | 3_1:+68672688 | None:intergenic |
| TGTGACAATCAAGAAAATCA+AGG | 0.527505 | 3_1:-68671681 | Msa0370770:CDS |
| GAAAATCAAGGATGCAATGG+TGG | 0.535112 | 3_1:-68671669 | Msa0370770:CDS |
| TCCTCCGGCATCTATGGCTA+CGG | 0.543132 | 3_1:+68671355 | None:intergenic |
| TTAATTGAATGGAAGTTGGA+TGG | 0.545409 | 3_1:+68672642 | None:intergenic |
| GACTACCTATGCTGGATCAA+AGG | 0.546319 | 3_1:-68672293 | Msa0370770:CDS |
| CAAGAAAATCAAGGATGCAA+TGG | 0.548537 | 3_1:-68671672 | Msa0370770:CDS |
| AAACTGGAAATCAGATCCTC+CGG | 0.552551 | 3_1:+68671340 | None:intergenic |
| TCTGTTGATTGGAGGAAGAA+AGG | 0.553167 | 3_1:-68672190 | Msa0370770:CDS |
| GGCTACGGATACAGGTTGGT+TGG | 0.553342 | 3_1:+68671370 | None:intergenic |
| GGATGGAAAGGGAAAGAGCA+GGG | 0.554487 | 3_1:+68672659 | None:intergenic |
| AGGTGCTGTCACTGAGGTCA+AGG | 0.558185 | 3_1:-68672170 | Msa0370770:CDS |
| ATCCATCATTTGCTGTGTAA+GGG | 0.560080 | 3_1:+68671583 | None:intergenic |
| GACCATCAATTGACACAGCT+GGG | 0.568817 | 3_1:+68671441 | None:intergenic |
| TGTGGGACTTATACGAGAGA+TGG | 0.573304 | 3_1:-68672474 | Msa0370770:CDS |
| AAAGCATCTTCATCGTTAGC+CGG | 0.584931 | 3_1:+68671407 | None:intergenic |
| AAATTCATGGTTGGTCATGT+CGG | 0.587621 | 3_1:+68672318 | None:intergenic |
| ATTAACCTTTGATCCAGCAT+AGG | 0.590030 | 3_1:+68672288 | None:intergenic |
| ATCTTGGAAATCGAAGCTCT+CGG | 0.596119 | 3_1:+68672522 | None:intergenic |
| TACTTCAAGAACCAAAGCAA+TGG | 0.600914 | 3_1:+68672546 | None:intergenic |
| TGTCCTCAGACAAAAGCTTG+TGG | 0.605870 | 3_1:-68672492 | Msa0370770:CDS |
| ATGTTCCGAGGCACGCCACG+TGG | 0.610728 | 3_1:-68672256 | Msa0370770:CDS |
| GCGTGCCTCGGAACATTCTG+TGG | 0.611727 | 3_1:+68672263 | None:intergenic |
| TCTCTTGTGTCAATATAGAG+AGG | 0.611735 | 3_1:+68671290 | None:intergenic |
| GGTAGTCCTAAATTCATGGT+TGG | 0.613532 | 3_1:+68672309 | None:intergenic |
| TGCTTCCAAACAAAGAAACA+TGG | 0.616974 | 3_1:-68672599 | Msa0370770:exon |
| AAAATCAAGGATGCAATGGT+GGG | 0.617377 | 3_1:-68671668 | Msa0370770:CDS |
| ATAAGCTCTTGTTCAGACAA+AGG | 0.634536 | 3_1:+68671708 | None:intergenic |
| CTATGGCTACGGATACAGGT+TGG | 0.643007 | 3_1:+68671366 | None:intergenic |
| GATGGAAAGGGAAAGAGCAG+GGG | 0.645005 | 3_1:+68672660 | None:intergenic |
| GGGACTTATACGAGAGATGG+AGG | 0.652822 | 3_1:-68672471 | Msa0370770:CDS |
| GTATCCGTAGCCATAGATGC+CGG | 0.655334 | 3_1:-68671359 | Msa0370770:CDS |
| AATCACCACAGAATGTTCCG+AGG | 0.693791 | 3_1:-68672268 | Msa0370770:CDS |
| TCCGTAGCCATAGATGCCGG+AGG | 0.697215 | 3_1:-68671356 | Msa0370770:CDS |
| GTCAAGGATCAAGGCCAATG+TGG | 0.699707 | 3_1:-68672154 | Msa0370770:intron |
| GAGATGGAGGAGTCACCACA+CGG | 0.702988 | 3_1:-68672458 | Msa0370770:CDS |
| CAAGGTTCCGAGAAACCGTG+TGG | 0.716333 | 3_1:+68672443 | None:intergenic |
| GAAGAAAGGTGCTGTCACTG+AGG | 0.722701 | 3_1:-68672176 | Msa0370770:CDS |
| ATGAATGTTCCACTTCCACG+TGG | 0.756623 | 3_1:+68672241 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAAAAAAGAGA+TGG | - | chr3_1:68672657-68672676 | Msa0370770:five_prime_UTR | 10.0% |
| !! | AAAAAATAAAAAAAAAGAGA+TGG | - | chr3_1:68672657-68672676 | Msa0370770:five_prime_UTR | 10.0% |
| !! | AGTGAATTGAATTTATAAAT+AGG | + | chr3_1:68671922-68671941 | None:intergenic | 15.0% |
| !! | TAGTATAACTATTTGAAAAT+AGG | + | chr3_1:68671986-68672005 | None:intergenic | 15.0% |
| !!! | ATGAATAATTTTTGAATCTT+AGG | + | chr3_1:68672422-68672441 | None:intergenic | 15.0% |
| !! | AGTGAATTGAATTTATAAAT+AGG | + | chr3_1:68671922-68671941 | None:intergenic | 15.0% |
| !! | TAGTATAACTATTTGAAAAT+AGG | + | chr3_1:68671986-68672005 | None:intergenic | 15.0% |
| !!! | ATGAATAATTTTTGAATCTT+AGG | + | chr3_1:68672422-68672441 | None:intergenic | 15.0% |
| !! | AAACTCAATAAAAAAATGTG+AGG | + | chr3_1:68671190-68671209 | None:intergenic | 20.0% |
| !!! | TTTGGAATGTATTAATTGAA+TGG | + | chr3_1:68671270-68671289 | None:intergenic | 20.0% |
| !! | AAACTCAATAAAAAAATGTG+AGG | + | chr3_1:68671190-68671209 | None:intergenic | 20.0% |
| !!! | TTTGGAATGTATTAATTGAA+TGG | + | chr3_1:68671270-68671289 | None:intergenic | 20.0% |
| ! | TGTATTAATTGAATGGAAGT+TGG | + | chr3_1:68671263-68671282 | None:intergenic | 25.0% |
| ! | TTGTTAAGTTTCAACTTGTA+AGG | + | chr3_1:68671555-68671574 | None:intergenic | 25.0% |
| !!! | CTTTTTTTAACTTACCACAT+TGG | + | chr3_1:68671761-68671780 | None:intergenic | 25.0% |
| !! | TATTGACTACATAAATGCAT+AGG | - | chr3_1:68671942-68671961 | Msa0370770:intron | 25.0% |
| !! | TTGTGATTAATGTTTTGTAC+AGG | - | chr3_1:68672097-68672116 | Msa0370770:intron | 25.0% |
| ! | TAAACCAAATAAAGACAGAT+AGG | - | chr3_1:68672161-68672180 | Msa0370770:CDS | 25.0% |
| ! | TTTGAGTACATTAAGCAAAA+AGG | - | chr3_1:68672268-68672287 | Msa0370770:CDS | 25.0% |
| ! | TATAATTGACATGCAACTTT+AGG | - | chr3_1:68672394-68672413 | Msa0370770:CDS | 25.0% |
| ! | TCAAAAATTATTCATGTTGC+AGG | - | chr3_1:68672427-68672446 | Msa0370770:CDS | 25.0% |
| ! | TGTATTAATTGAATGGAAGT+TGG | + | chr3_1:68671263-68671282 | None:intergenic | 25.0% |
| ! | TTGTTAAGTTTCAACTTGTA+AGG | + | chr3_1:68671555-68671574 | None:intergenic | 25.0% |
| !!! | CTTTTTTTAACTTACCACAT+TGG | + | chr3_1:68671761-68671780 | None:intergenic | 25.0% |
| !! | TATTGACTACATAAATGCAT+AGG | - | chr3_1:68671942-68671961 | Msa0370770:intron | 25.0% |
| !! | TTGTGATTAATGTTTTGTAC+AGG | - | chr3_1:68672097-68672116 | Msa0370770:intron | 25.0% |
| ! | TAAACCAAATAAAGACAGAT+AGG | - | chr3_1:68672161-68672180 | Msa0370770:CDS | 25.0% |
| ! | TTTGAGTACATTAAGCAAAA+AGG | - | chr3_1:68672268-68672287 | Msa0370770:CDS | 25.0% |
| ! | TATAATTGACATGCAACTTT+AGG | - | chr3_1:68672394-68672413 | Msa0370770:CDS | 25.0% |
| ! | TCAAAAATTATTCATGTTGC+AGG | - | chr3_1:68672427-68672446 | Msa0370770:CDS | 25.0% |
| TTATATAGAGGATTGGAGAA+AGG | + | chr3_1:68671213-68671232 | None:intergenic | 30.0% | |
| TTAATTGAATGGAAGTTGGA+TGG | + | chr3_1:68671259-68671278 | None:intergenic | 30.0% | |
| AGTTTCCATGTTTCTTTGTT+TGG | + | chr3_1:68671307-68671326 | None:intergenic | 30.0% | |
| AAAGCTATAGTGCATAATAG+TGG | + | chr3_1:68672062-68672081 | None:intergenic | 30.0% | |
| CTAACCTATCTGTCTTTATT+TGG | + | chr3_1:68672168-68672187 | None:intergenic | 30.0% | |
| TGTGACAATCAAGAAAATCA+AGG | - | chr3_1:68672217-68672236 | Msa0370770:CDS | 30.0% | |
| ! | ATCTGATTTCCAGTTTTACT+CGG | - | chr3_1:68672565-68672584 | Msa0370770:CDS | 30.0% |
| TTATATAGAGGATTGGAGAA+AGG | + | chr3_1:68671213-68671232 | None:intergenic | 30.0% | |
| TTAATTGAATGGAAGTTGGA+TGG | + | chr3_1:68671259-68671278 | None:intergenic | 30.0% | |
| AGTTTCCATGTTTCTTTGTT+TGG | + | chr3_1:68671307-68671326 | None:intergenic | 30.0% | |
| AAAGCTATAGTGCATAATAG+TGG | + | chr3_1:68672062-68672081 | None:intergenic | 30.0% | |
| CTAACCTATCTGTCTTTATT+TGG | + | chr3_1:68672168-68672187 | None:intergenic | 30.0% | |
| TGTGACAATCAAGAAAATCA+AGG | - | chr3_1:68672217-68672236 | Msa0370770:CDS | 30.0% | |
| ! | ATCTGATTTCCAGTTTTACT+CGG | - | chr3_1:68672565-68672584 | Msa0370770:CDS | 30.0% |
| GGACTGTTTATATAGAGGAT+TGG | + | chr3_1:68671220-68671239 | None:intergenic | 35.0% | |
| TTGGAAGCAATTCACTTGTT+TGG | + | chr3_1:68671288-68671307 | None:intergenic | 35.0% | |
| TGCTTCCAAACAAAGAAACA+TGG | - | chr3_1:68671299-68671318 | Msa0370770:CDS | 35.0% | |
| TACTTCAAGAACCAAAGCAA+TGG | + | chr3_1:68671355-68671374 | None:intergenic | 35.0% | |
| !!! | TATCCATTTTGTTGGTGTTG+TGG | + | chr3_1:68671530-68671549 | None:intergenic | 35.0% |
| ! | GTAAGGCTTATCCATTTTGT+TGG | + | chr3_1:68671538-68671557 | None:intergenic | 35.0% |
| ! | AAATTCATGGTTGGTCATGT+CGG | + | chr3_1:68671583-68671602 | None:intergenic | 35.0% |
| ACATGACCAACCATGAATTT+AGG | - | chr3_1:68671583-68671602 | Msa0370770:CDS | 35.0% | |
| CATAGGTAGTCCTAAATTCA+TGG | + | chr3_1:68671596-68671615 | None:intergenic | 35.0% | |
| ATTAACCTTTGATCCAGCAT+AGG | + | chr3_1:68671613-68671632 | None:intergenic | 35.0% | |
| GTTGCAAACCTGAAACTTAA+AGG | - | chr3_1:68671878-68671897 | Msa0370770:intron | 35.0% | |
| ATAAGCTCTTGTTCAGACAA+AGG | + | chr3_1:68672193-68672212 | None:intergenic | 35.0% | |
| CAAGAAAATCAAGGATGCAA+TGG | - | chr3_1:68672226-68672245 | Msa0370770:CDS | 35.0% | |
| AAAATCAAGGATGCAATGGT+GGG | - | chr3_1:68672230-68672249 | Msa0370770:CDS | 35.0% | |
| GAGTACATTAAGCAAAAAGG+TGG | - | chr3_1:68672271-68672290 | Msa0370770:CDS | 35.0% | |
| !! | ATCCATCATTTGCTGTGTAA+GGG | + | chr3_1:68672318-68672337 | None:intergenic | 35.0% |
| ! | TTTTTACCTCCGAGTAAAAC+TGG | + | chr3_1:68672577-68672596 | None:intergenic | 35.0% |
| TCTCTTGTGTCAATATAGAG+AGG | + | chr3_1:68672611-68672630 | None:intergenic | 35.0% | |
| GGACTGTTTATATAGAGGAT+TGG | + | chr3_1:68671220-68671239 | None:intergenic | 35.0% | |
| TTGGAAGCAATTCACTTGTT+TGG | + | chr3_1:68671288-68671307 | None:intergenic | 35.0% | |
| TGCTTCCAAACAAAGAAACA+TGG | - | chr3_1:68671299-68671318 | Msa0370770:CDS | 35.0% | |
| TACTTCAAGAACCAAAGCAA+TGG | + | chr3_1:68671355-68671374 | None:intergenic | 35.0% | |
| !!! | TATCCATTTTGTTGGTGTTG+TGG | + | chr3_1:68671530-68671549 | None:intergenic | 35.0% |
| ! | GTAAGGCTTATCCATTTTGT+TGG | + | chr3_1:68671538-68671557 | None:intergenic | 35.0% |
| ! | AAATTCATGGTTGGTCATGT+CGG | + | chr3_1:68671583-68671602 | None:intergenic | 35.0% |
| ACATGACCAACCATGAATTT+AGG | - | chr3_1:68671583-68671602 | Msa0370770:CDS | 35.0% | |
| CATAGGTAGTCCTAAATTCA+TGG | + | chr3_1:68671596-68671615 | None:intergenic | 35.0% | |
| ATTAACCTTTGATCCAGCAT+AGG | + | chr3_1:68671613-68671632 | None:intergenic | 35.0% | |
| GTTGCAAACCTGAAACTTAA+AGG | - | chr3_1:68671878-68671897 | Msa0370770:intron | 35.0% | |
| ATAAGCTCTTGTTCAGACAA+AGG | + | chr3_1:68672193-68672212 | None:intergenic | 35.0% | |
| CAAGAAAATCAAGGATGCAA+TGG | - | chr3_1:68672226-68672245 | Msa0370770:CDS | 35.0% | |
| AAAATCAAGGATGCAATGGT+GGG | - | chr3_1:68672230-68672249 | Msa0370770:CDS | 35.0% | |
| GAGTACATTAAGCAAAAAGG+TGG | - | chr3_1:68672271-68672290 | Msa0370770:CDS | 35.0% | |
| !! | ATCCATCATTTGCTGTGTAA+GGG | + | chr3_1:68672318-68672337 | None:intergenic | 35.0% |
| ! | TTTTTACCTCCGAGTAAAAC+TGG | + | chr3_1:68672577-68672596 | None:intergenic | 35.0% |
| TCTCTTGTGTCAATATAGAG+AGG | + | chr3_1:68672611-68672630 | None:intergenic | 35.0% | |
| GAATGGAAGTTGGATGGAAA+GGG | + | chr3_1:68671253-68671272 | None:intergenic | 40.0% | |
| TGAATGGAAGTTGGATGGAA+AGG | + | chr3_1:68671254-68671273 | None:intergenic | 40.0% | |
| GATTGTTCTGTCCATTGCTT+TGG | - | chr3_1:68671341-68671360 | Msa0370770:CDS | 40.0% | |
| ATCTTGGAAATCGAAGCTCT+CGG | + | chr3_1:68671379-68671398 | None:intergenic | 40.0% | |
| CTGAGGACACATCTTTATCT+TGG | + | chr3_1:68671395-68671414 | None:intergenic | 40.0% | |
| !! | AGCGCTTTTGTTTCTCATCA+AGG | + | chr3_1:68671476-68671495 | None:intergenic | 40.0% |
| TGTCCACAACACCAACAAAA+TGG | - | chr3_1:68671524-68671543 | Msa0370770:intron | 40.0% | |
| GGTAGTCCTAAATTCATGGT+TGG | + | chr3_1:68671592-68671611 | None:intergenic | 40.0% | |
| ! | GAATTTAGGACTACCTATGC+TGG | - | chr3_1:68671597-68671616 | Msa0370770:CDS | 40.0% |
| ! | TCTGTTGATTGGAGGAAGAA+AGG | - | chr3_1:68671708-68671727 | Msa0370770:CDS | 40.0% |
| GACACCATCTGATCAAAGAT+CGG | - | chr3_1:68671832-68671851 | Msa0370770:intron | 40.0% | |
| TCATCCGATCTTTGATCAGA+TGG | + | chr3_1:68671839-68671858 | None:intergenic | 40.0% | |
| ! | TGTTTTGTACAGGTAGTTGC+TGG | - | chr3_1:68672107-68672126 | Msa0370770:intron | 40.0% |
| ! | GTTTTGTACAGGTAGTTGCT+GGG | - | chr3_1:68672108-68672127 | Msa0370770:intron | 40.0% |
| TCAACTGTTGTAGCTGTTGA+AGG | - | chr3_1:68672136-68672155 | Msa0370770:intron | 40.0% | |
| GAAAATCAAGGATGCAATGG+TGG | - | chr3_1:68672229-68672248 | Msa0370770:CDS | 40.0% | |
| TACCCTTACACAGCAAATGA+TGG | - | chr3_1:68672313-68672332 | Msa0370770:CDS | 40.0% | |
| !! | GATCCATCATTTGCTGTGTA+AGG | + | chr3_1:68672319-68672338 | None:intergenic | 40.0% |
| ! | AAAGCATCTTCATCGTTAGC+CGG | + | chr3_1:68672494-68672513 | None:intergenic | 40.0% |
| AAACTGGAAATCAGATCCTC+CGG | + | chr3_1:68672561-68672580 | None:intergenic | 40.0% | |
| ! | TGATTTCCAGTTTTACTCGG+AGG | - | chr3_1:68672568-68672587 | Msa0370770:CDS | 40.0% |
| GAATGGAAGTTGGATGGAAA+GGG | + | chr3_1:68671253-68671272 | None:intergenic | 40.0% | |
| TGAATGGAAGTTGGATGGAA+AGG | + | chr3_1:68671254-68671273 | None:intergenic | 40.0% | |
| GATTGTTCTGTCCATTGCTT+TGG | - | chr3_1:68671341-68671360 | Msa0370770:CDS | 40.0% | |
| ATCTTGGAAATCGAAGCTCT+CGG | + | chr3_1:68671379-68671398 | None:intergenic | 40.0% | |
| CTGAGGACACATCTTTATCT+TGG | + | chr3_1:68671395-68671414 | None:intergenic | 40.0% | |
| !! | AGCGCTTTTGTTTCTCATCA+AGG | + | chr3_1:68671476-68671495 | None:intergenic | 40.0% |
| TGTCCACAACACCAACAAAA+TGG | - | chr3_1:68671524-68671543 | Msa0370770:intron | 40.0% | |
| GGTAGTCCTAAATTCATGGT+TGG | + | chr3_1:68671592-68671611 | None:intergenic | 40.0% | |
| ! | GAATTTAGGACTACCTATGC+TGG | - | chr3_1:68671597-68671616 | Msa0370770:CDS | 40.0% |
| ! | TCTGTTGATTGGAGGAAGAA+AGG | - | chr3_1:68671708-68671727 | Msa0370770:CDS | 40.0% |
| GACACCATCTGATCAAAGAT+CGG | - | chr3_1:68671832-68671851 | Msa0370770:intron | 40.0% | |
| TCATCCGATCTTTGATCAGA+TGG | + | chr3_1:68671839-68671858 | None:intergenic | 40.0% | |
| ! | TGTTTTGTACAGGTAGTTGC+TGG | - | chr3_1:68672107-68672126 | Msa0370770:intron | 40.0% |
| ! | GTTTTGTACAGGTAGTTGCT+GGG | - | chr3_1:68672108-68672127 | Msa0370770:intron | 40.0% |
| TCAACTGTTGTAGCTGTTGA+AGG | - | chr3_1:68672136-68672155 | Msa0370770:intron | 40.0% | |
| GAAAATCAAGGATGCAATGG+TGG | - | chr3_1:68672229-68672248 | Msa0370770:CDS | 40.0% | |
| TACCCTTACACAGCAAATGA+TGG | - | chr3_1:68672313-68672332 | Msa0370770:CDS | 40.0% | |
| !! | GATCCATCATTTGCTGTGTA+AGG | + | chr3_1:68672319-68672338 | None:intergenic | 40.0% |
| ! | AAAGCATCTTCATCGTTAGC+CGG | + | chr3_1:68672494-68672513 | None:intergenic | 40.0% |
| AAACTGGAAATCAGATCCTC+CGG | + | chr3_1:68672561-68672580 | None:intergenic | 40.0% | |
| ! | TGATTTCCAGTTTTACTCGG+AGG | - | chr3_1:68672568-68672587 | Msa0370770:CDS | 40.0% |
| GCAGGGGACTGTTTATATAG+AGG | + | chr3_1:68671225-68671244 | None:intergenic | 45.0% | |
| TGTCCTCAGACAAAAGCTTG+TGG | - | chr3_1:68671406-68671425 | Msa0370770:CDS | 45.0% | |
| GTCCTCAGACAAAAGCTTGT+GGG | - | chr3_1:68671407-68671426 | Msa0370770:CDS | 45.0% | |
| TGTGGGACTTATACGAGAGA+TGG | - | chr3_1:68671424-68671443 | Msa0370770:CDS | 45.0% | |
| GACTACCTATGCTGGATCAA+AGG | - | chr3_1:68671605-68671624 | Msa0370770:CDS | 45.0% | |
| AATCACCACAGAATGTTCCG+AGG | - | chr3_1:68671630-68671649 | Msa0370770:CDS | 45.0% | |
| ATGAATGTTCCACTTCCACG+TGG | + | chr3_1:68671660-68671679 | None:intergenic | 45.0% | |
| ATCAACAGAAGCAGGAGCTT+TGG | + | chr3_1:68671697-68671716 | None:intergenic | 45.0% | |
| AAGCTCCTGCTTCTGTTGAT+TGG | - | chr3_1:68671697-68671716 | Msa0370770:CDS | 45.0% | |
| TTCCTCCAATCAACAGAAGC+AGG | + | chr3_1:68671705-68671724 | None:intergenic | 45.0% | |
| ! | CCACGAGTCCTTTAAGTTTC+AGG | + | chr3_1:68671889-68671908 | None:intergenic | 45.0% |
| CCTGAAACTTAAAGGACTCG+TGG | - | chr3_1:68671886-68671905 | Msa0370770:intron | 45.0% | |
| GACCATCAATTGACACAGCT+GGG | + | chr3_1:68672460-68672479 | None:intergenic | 45.0% | |
| TGACCATCAATTGACACAGC+TGG | + | chr3_1:68672461-68672480 | None:intergenic | 45.0% | |
| TGATGGTCATGAGACTGTTC+CGG | - | chr3_1:68672472-68672491 | Msa0370770:CDS | 45.0% | |
| GCAGGGGACTGTTTATATAG+AGG | + | chr3_1:68671225-68671244 | None:intergenic | 45.0% | |
| TGTCCTCAGACAAAAGCTTG+TGG | - | chr3_1:68671406-68671425 | Msa0370770:CDS | 45.0% | |
| GTCCTCAGACAAAAGCTTGT+GGG | - | chr3_1:68671407-68671426 | Msa0370770:CDS | 45.0% | |
| TGTGGGACTTATACGAGAGA+TGG | - | chr3_1:68671424-68671443 | Msa0370770:CDS | 45.0% | |
| GACTACCTATGCTGGATCAA+AGG | - | chr3_1:68671605-68671624 | Msa0370770:CDS | 45.0% | |
| AATCACCACAGAATGTTCCG+AGG | - | chr3_1:68671630-68671649 | Msa0370770:CDS | 45.0% | |
| ATGAATGTTCCACTTCCACG+TGG | + | chr3_1:68671660-68671679 | None:intergenic | 45.0% | |
| ATCAACAGAAGCAGGAGCTT+TGG | + | chr3_1:68671697-68671716 | None:intergenic | 45.0% | |
| AAGCTCCTGCTTCTGTTGAT+TGG | - | chr3_1:68671697-68671716 | Msa0370770:CDS | 45.0% | |
| TTCCTCCAATCAACAGAAGC+AGG | + | chr3_1:68671705-68671724 | None:intergenic | 45.0% | |
| ! | CCACGAGTCCTTTAAGTTTC+AGG | + | chr3_1:68671889-68671908 | None:intergenic | 45.0% |
| CCTGAAACTTAAAGGACTCG+TGG | - | chr3_1:68671886-68671905 | Msa0370770:intron | 45.0% | |
| GACCATCAATTGACACAGCT+GGG | + | chr3_1:68672460-68672479 | None:intergenic | 45.0% | |
| TGACCATCAATTGACACAGC+TGG | + | chr3_1:68672461-68672480 | None:intergenic | 45.0% | |
| TGATGGTCATGAGACTGTTC+CGG | - | chr3_1:68672472-68672491 | Msa0370770:CDS | 45.0% | |
| !! | AAAAATATAATATATAACTT+AGG | + | chr3_1:68672039-68672058 | None:intergenic | 5.0% |
| !!! | TTTTTATTTTTTTATTTTGA+AGG | + | chr3_1:68672649-68672668 | None:intergenic | 5.0% |
| !! | AAAAATATAATATATAACTT+AGG | + | chr3_1:68672039-68672058 | None:intergenic | 5.0% |
| !!! | TTTTTATTTTTTTATTTTGA+AGG | + | chr3_1:68672649-68672668 | None:intergenic | 5.0% |
| GATGGAAAGGGAAAGAGCAG+GGG | + | chr3_1:68671241-68671260 | None:intergenic | 50.0% | |
| GGATGGAAAGGGAAAGAGCA+GGG | + | chr3_1:68671242-68671261 | None:intergenic | 50.0% | |
| TGGATGGAAAGGGAAAGAGC+AGG | + | chr3_1:68671243-68671262 | None:intergenic | 50.0% | |
| ! | GTCCCACAAGCTTTTGTCTG+AGG | + | chr3_1:68671412-68671431 | None:intergenic | 50.0% |
| GGGACTTATACGAGAGATGG+AGG | - | chr3_1:68671427-68671446 | Msa0370770:CDS | 50.0% | |
| ! | CTCCTGCTTCTGTTGATTGG+AGG | - | chr3_1:68671700-68671719 | Msa0370770:CDS | 50.0% |
| !! | GAAGAAAGGTGCTGTCACTG+AGG | - | chr3_1:68671722-68671741 | Msa0370770:CDS | 50.0% |
| GTCACTGAGGTCAAGGATCA+AGG | - | chr3_1:68671735-68671754 | Msa0370770:CDS | 50.0% | |
| GTCAAGGATCAAGGCCAATG+TGG | - | chr3_1:68671744-68671763 | Msa0370770:CDS | 50.0% | |
| ! | CTGTTGACTGCGTGAATGCA+TGG | + | chr3_1:68671809-68671828 | None:intergenic | 50.0% |
| !! | AGGATGCAATGGTGGGCTAA+TGG | - | chr3_1:68672237-68672256 | Msa0370770:CDS | 50.0% |
| GTCCCAGCTGTGTCAATTGA+TGG | - | chr3_1:68672455-68672474 | Msa0370770:CDS | 50.0% | |
| CTATGGCTACGGATACAGGT+TGG | + | chr3_1:68672535-68672554 | None:intergenic | 50.0% | |
| GCATCTATGGCTACGGATAC+AGG | + | chr3_1:68672539-68672558 | None:intergenic | 50.0% | |
| GTATCCGTAGCCATAGATGC+CGG | - | chr3_1:68672539-68672558 | Msa0370770:CDS | 50.0% | |
| ATCAGATCCTCCGGCATCTA+TGG | + | chr3_1:68672552-68672571 | None:intergenic | 50.0% | |
| GATGGAAAGGGAAAGAGCAG+GGG | + | chr3_1:68671241-68671260 | None:intergenic | 50.0% | |
| GGATGGAAAGGGAAAGAGCA+GGG | + | chr3_1:68671242-68671261 | None:intergenic | 50.0% | |
| TGGATGGAAAGGGAAAGAGC+AGG | + | chr3_1:68671243-68671262 | None:intergenic | 50.0% | |
| ! | GTCCCACAAGCTTTTGTCTG+AGG | + | chr3_1:68671412-68671431 | None:intergenic | 50.0% |
| GGGACTTATACGAGAGATGG+AGG | - | chr3_1:68671427-68671446 | Msa0370770:CDS | 50.0% | |
| ! | CTCCTGCTTCTGTTGATTGG+AGG | - | chr3_1:68671700-68671719 | Msa0370770:CDS | 50.0% |
| !! | GAAGAAAGGTGCTGTCACTG+AGG | - | chr3_1:68671722-68671741 | Msa0370770:CDS | 50.0% |
| GTCACTGAGGTCAAGGATCA+AGG | - | chr3_1:68671735-68671754 | Msa0370770:CDS | 50.0% | |
| GTCAAGGATCAAGGCCAATG+TGG | - | chr3_1:68671744-68671763 | Msa0370770:CDS | 50.0% | |
| ! | CTGTTGACTGCGTGAATGCA+TGG | + | chr3_1:68671809-68671828 | None:intergenic | 50.0% |
| !! | AGGATGCAATGGTGGGCTAA+TGG | - | chr3_1:68672237-68672256 | Msa0370770:CDS | 50.0% |
| GTCCCAGCTGTGTCAATTGA+TGG | - | chr3_1:68672455-68672474 | Msa0370770:CDS | 50.0% | |
| CTATGGCTACGGATACAGGT+TGG | + | chr3_1:68672535-68672554 | None:intergenic | 50.0% | |
| GCATCTATGGCTACGGATAC+AGG | + | chr3_1:68672539-68672558 | None:intergenic | 50.0% | |
| GTATCCGTAGCCATAGATGC+CGG | - | chr3_1:68672539-68672558 | Msa0370770:CDS | 50.0% | |
| ATCAGATCCTCCGGCATCTA+TGG | + | chr3_1:68672552-68672571 | None:intergenic | 50.0% | |
| GAGATGGAGGAGTCACCACA+CGG | - | chr3_1:68671440-68671459 | Msa0370770:CDS | 55.0% | |
| GGAGTCACCACACGGTTTCT+CGG | - | chr3_1:68671448-68671467 | Msa0370770:CDS | 55.0% | |
| CAAGGTTCCGAGAAACCGTG+TGG | + | chr3_1:68671458-68671477 | None:intergenic | 55.0% | |
| ! | AGGTGCTGTCACTGAGGTCA+AGG | - | chr3_1:68671728-68671747 | Msa0370770:CDS | 55.0% |
| !! | GGCTACGGATACAGGTTGGT+TGG | + | chr3_1:68672531-68672550 | None:intergenic | 55.0% |
| TCCTCCGGCATCTATGGCTA+CGG | + | chr3_1:68672546-68672565 | None:intergenic | 55.0% | |
| GAGATGGAGGAGTCACCACA+CGG | - | chr3_1:68671440-68671459 | Msa0370770:CDS | 55.0% | |
| GGAGTCACCACACGGTTTCT+CGG | - | chr3_1:68671448-68671467 | Msa0370770:CDS | 55.0% | |
| CAAGGTTCCGAGAAACCGTG+TGG | + | chr3_1:68671458-68671477 | None:intergenic | 55.0% | |
| ! | AGGTGCTGTCACTGAGGTCA+AGG | - | chr3_1:68671728-68671747 | Msa0370770:CDS | 55.0% |
| !! | GGCTACGGATACAGGTTGGT+TGG | + | chr3_1:68672531-68672550 | None:intergenic | 55.0% |
| TCCTCCGGCATCTATGGCTA+CGG | + | chr3_1:68672546-68672565 | None:intergenic | 55.0% | |
| GCGTGCCTCGGAACATTCTG+TGG | + | chr3_1:68671638-68671657 | None:intergenic | 60.0% | |
| TCCGTAGCCATAGATGCCGG+AGG | - | chr3_1:68672542-68672561 | Msa0370770:CDS | 60.0% | |
| GCGTGCCTCGGAACATTCTG+TGG | + | chr3_1:68671638-68671657 | None:intergenic | 60.0% | |
| TCCGTAGCCATAGATGCCGG+AGG | - | chr3_1:68672542-68672561 | Msa0370770:CDS | 60.0% | |
| ATGTTCCGAGGCACGCCACG+TGG | - | chr3_1:68671642-68671661 | Msa0370770:CDS | 65.0% | |
| CACTTCCACGTGGCGTGCCT+CGG | + | chr3_1:68671650-68671669 | None:intergenic | 65.0% | |
| ATGTTCCGAGGCACGCCACG+TGG | - | chr3_1:68671642-68671661 | Msa0370770:CDS | 65.0% | |
| CACTTCCACGTGGCGTGCCT+CGG | + | chr3_1:68671650-68671669 | None:intergenic | 65.0% | |
| CGAGGCACGCCACGTGGAAG+TGG | - | chr3_1:68671648-68671667 | Msa0370770:CDS | 70.0% | |
| CGAGGCACGCCACGTGGAAG+TGG | - | chr3_1:68671648-68671667 | Msa0370770:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 68671179 | 68672741 | 68671179 | ID=Msa0370770;Name=Msa0370770 |
| chr3_1 | mRNA | 68671179 | 68672741 | 68671179 | ID=Msa0370770-mRNA-1;Parent=Msa0370770;Name=Msa0370770-mRNA-1;_AED=0.02;_eAED=0.02;_QI=139|1|1|1|1|1|3|107|289 |
| chr3_1 | exon | 68671179 | 68671471 | 68671179 | ID=Msa0370770-mRNA-1:exon:14460;Parent=Msa0370770-mRNA-1 |
| chr3_1 | exon | 68671566 | 68671801 | 68671566 | ID=Msa0370770-mRNA-1:exon:14459;Parent=Msa0370770-mRNA-1 |
| chr3_1 | exon | 68672155 | 68672741 | 68672155 | ID=Msa0370770-mRNA-1:exon:14458;Parent=Msa0370770-mRNA-1 |
| chr3_1 | five_prime_UTR | 68672603 | 68672741 | 68672603 | ID=Msa0370770-mRNA-1:five_prime_utr;Parent=Msa0370770-mRNA-1 |
| chr3_1 | CDS | 68672155 | 68672602 | 68672155 | ID=Msa0370770-mRNA-1:cds;Parent=Msa0370770-mRNA-1 |
| chr3_1 | CDS | 68671566 | 68671801 | 68671566 | ID=Msa0370770-mRNA-1:cds;Parent=Msa0370770-mRNA-1 |
| chr3_1 | CDS | 68671286 | 68671471 | 68671286 | ID=Msa0370770-mRNA-1:cds;Parent=Msa0370770-mRNA-1 |
| chr3_1 | three_prime_UTR | 68671179 | 68671285 | 68671179 | ID=Msa0370770-mRNA-1:three_prime_utr;Parent=Msa0370770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
