Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371460 | XP_013461062.1 | 91.640 | 622 | 40 | 3 | 1 | 614 | 1 | 618 | 0.0 | 1175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371460 | sp|Q9SU72|EDS1C_ARATH | 39.906 | 639 | 308 | 15 | 13 | 609 | 9 | 613 | 1.13e-143 | 433 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371460 | A0A072V056 | 91.640 | 622 | 40 | 3 | 1 | 614 | 1 | 618 | 0.0 | 1175 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0371460 | Msa0408340 | 0.805883 | 1.076354e-49 | -8.615850e-47 |
| Msa0371460 | Msa0419670 | 0.882915 | 6.979532e-71 | -8.615850e-47 |
| Msa0371460 | Msa0443020 | 0.836134 | 1.118061e-56 | -8.615850e-47 |
| Msa0371460 | Msa0450180 | 0.928725 | 1.923124e-92 | -8.615850e-47 |
| Msa0371460 | Msa0511620 | 0.935682 | 5.772251e-97 | -8.615850e-47 |
| Msa0371460 | Msa0567250 | 0.800948 | 1.134251e-48 | -8.615850e-47 |
| Msa0371460 | Msa0786980 | 0.810524 | 1.104664e-50 | -8.615850e-47 |
| Msa0371460 | Msa0822350 | 0.820103 | 8.185652e-53 | -8.615850e-47 |
| Msa0371460 | Msa0958080 | 0.811520 | 6.718244e-51 | -8.615850e-47 |
| Msa0371460 | Msa0992640 | 0.822605 | 2.166019e-53 | -8.615850e-47 |
| Msa0371460 | Msa0992680 | 0.827987 | 1.154379e-54 | -8.615850e-47 |
| Msa0371460 | Msa1084640 | 0.833228 | 6.016924e-56 | -8.615850e-47 |
| Msa0371460 | Msa1400340 | 0.836239 | 1.051346e-56 | -8.615850e-47 |
| Msa0371460 | Msa1416730 | 0.830073 | 3.606270e-55 | -8.615850e-47 |
| Msa0371460 | Msa1430550 | 0.814932 | 1.197772e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371460 | MtrunA17_Chr3g0118251 | 91.640 | 622 | 40 | 3 | 1 | 614 | 1 | 618 | 0.0 | 1175 |
| Msa0371460 | MtrunA17_Chr3g0118541 | 50.796 | 628 | 277 | 13 | 6 | 614 | 12 | 626 | 0.0 | 593 |
| Msa0371460 | MtrunA17_Chr8g0384621 | 26.087 | 552 | 322 | 22 | 34 | 544 | 43 | 549 | 9.94e-48 | 177 |
| Msa0371460 | MtrunA17_Chr3g0107671 | 26.966 | 356 | 203 | 17 | 272 | 595 | 209 | 539 | 2.47e-21 | 98.2 |
| Msa0371460 | MtrunA17_Chr6g0451541 | 24.576 | 354 | 217 | 13 | 271 | 595 | 210 | 542 | 9.74e-20 | 93.2 |
| Msa0371460 | MtrunA17_Chr6g0451531 | 25.138 | 362 | 206 | 16 | 271 | 596 | 210 | 542 | 5.40e-16 | 81.3 |
| Msa0371460 | MtrunA17_Chr6g0451561 | 24.397 | 373 | 187 | 17 | 274 | 596 | 213 | 540 | 1.31e-15 | 80.1 |
| Msa0371460 | MtrunA17_Chr6g0451511 | 23.596 | 356 | 220 | 13 | 272 | 597 | 209 | 542 | 1.05e-14 | 77.4 |
| Msa0371460 | MtrunA17_Chr8g0338691 | 41.379 | 87 | 48 | 1 | 112 | 195 | 225 | 311 | 4.35e-11 | 66.2 |
| Msa0371460 | MtrunA17_Chr3g0120261 | 73.810 | 42 | 7 | 1 | 558 | 599 | 14 | 51 | 7.39e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371460 | AT3G48090.1 | 39.906 | 639 | 308 | 15 | 13 | 609 | 9 | 613 | 1.15e-144 | 433 |
| Msa0371460 | AT3G48080.1 | 38.386 | 607 | 312 | 15 | 35 | 603 | 29 | 611 | 3.35e-133 | 404 |
| Msa0371460 | AT3G48090.2 | 42.351 | 536 | 239 | 12 | 112 | 609 | 2 | 505 | 3.28e-132 | 397 |
| Msa0371460 | AT3G52430.1 | 25.926 | 351 | 203 | 13 | 264 | 580 | 175 | 502 | 1.18e-24 | 108 |
| Msa0371460 | AT3G52430.1 | 44.000 | 75 | 38 | 2 | 119 | 193 | 112 | 182 | 6.96e-11 | 65.5 |
| Msa0371460 | AT5G14930.2 | 29.204 | 226 | 125 | 9 | 398 | 597 | 293 | 509 | 8.72e-16 | 81.3 |
Find 135 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAATATCTTTGAATCTT+TGG | 0.137148 | 3_1:-69603975 | None:intergenic |
| CCAAAGATTCAAAGATATTT+TGG | 0.139370 | 3_1:+69603975 | Msa0371460:CDS |
| TAATGCATGATTGTTCTTTA+TGG | 0.162207 | 3_1:-69606785 | None:intergenic |
| GGGATACGATCGGAAGATTT+TGG | 0.194261 | 3_1:-69604757 | None:intergenic |
| CCTCCCATCTGCATTACTTT+TGG | 0.239470 | 3_1:+69604778 | Msa0371460:CDS |
| GGCTATTCTGGCAACACTTT+GGG | 0.244937 | 3_1:+69604714 | Msa0371460:CDS |
| GTCATTTAAGGCTATGTTAA+TGG | 0.251285 | 3_1:-69605412 | None:intergenic |
| GCTCATGAATGATTTGCTTT+TGG | 0.251739 | 3_1:-69604968 | None:intergenic |
| ATGCTACAAGGAGAGAAAAT+TGG | 0.262993 | 3_1:+69604833 | Msa0371460:CDS |
| CTTTGTTTGGTTATGTAATA+AGG | 0.263679 | 3_1:+69606928 | Msa0371460:three_prime_UTR |
| GGTTGATAAGGATGTGTTTA+AGG | 0.269056 | 3_1:+69606707 | Msa0371460:CDS |
| GGCTAGAACTTGCAGGAGTA+TGG | 0.273354 | 3_1:+69606316 | Msa0371460:CDS |
| TACCAGGCCAAGGTCATTTA+AGG | 0.278195 | 3_1:-69605424 | None:intergenic |
| TCGTTCCCTTCTAAGTCTTC+TGG | 0.280228 | 3_1:-69606375 | None:intergenic |
| TGGTGGTCCAGTGGCTATTC+TGG | 0.280884 | 3_1:+69604702 | Msa0371460:CDS |
| CCGTGATGGACGTGTTTATA+TGG | 0.287982 | 3_1:+69606479 | Msa0371460:CDS |
| ACATTTGCTTGGAAATCTTC+CGG | 0.306152 | 3_1:-69606288 | None:intergenic |
| AGTTTCACCAAAAGTTGTTT+TGG | 0.309827 | 3_1:-69603875 | None:intergenic |
| TGGTTTCTTGTGAGCCTTCA+AGG | 0.321792 | 3_1:-69603770 | None:intergenic |
| TGGTATTCCAAAACAACTTT+TGG | 0.322409 | 3_1:+69603868 | Msa0371460:CDS |
| TTGTCTGAGCATACTACTTC+AGG | 0.335540 | 3_1:+69605375 | Msa0371460:CDS |
| TGTCATATCTCATCACAAAA+TGG | 0.352184 | 3_1:-69604870 | None:intergenic |
| CATCAGGTGCTTTCAAAGAT+TGG | 0.360920 | 3_1:+69603848 | Msa0371460:CDS |
| GAACTTCCAGAAGACTTAGA+AGG | 0.361685 | 3_1:+69606369 | Msa0371460:CDS |
| ACTTAGAAGGGAACGAAGAT+TGG | 0.364202 | 3_1:+69606382 | Msa0371460:CDS |
| ACATGCTGCTTGTAGGCTAA+TGG | 0.368160 | 3_1:+69605068 | Msa0371460:CDS |
| TAAGGAAAAGGTTGAGGCCT+TGG | 0.370762 | 3_1:+69606650 | Msa0371460:CDS |
| CATTTGCTTGGAAATCTTCC+GGG | 0.374664 | 3_1:-69606287 | None:intergenic |
| TAAGTTCCAAAGGGTCTATA+AGG | 0.375128 | 3_1:-69605141 | None:intergenic |
| TTGAGTCCTTATAGACCCTT+TGG | 0.379079 | 3_1:+69605135 | Msa0371460:CDS |
| TAGAAGACTAGTTGAGCCTT+TGG | 0.383000 | 3_1:+69606425 | Msa0371460:CDS |
| TCACAAGACATGCTGCTTGT+AGG | 0.383836 | 3_1:+69605061 | Msa0371460:CDS |
| GTTGGATCATGCACTTTGTT+TGG | 0.384787 | 3_1:+69606915 | Msa0371460:three_prime_UTR |
| TCAAGCAGCTGCAGCATTAG+AGG | 0.386121 | 3_1:+69606125 | Msa0371460:CDS |
| TCATCACAAAATGGAAGAAA+TGG | 0.387158 | 3_1:-69604861 | None:intergenic |
| GTCATTTGATGCGTCCTTGA+AGG | 0.387294 | 3_1:+69603756 | Msa0371460:CDS |
| ACATCTTCAAAAGGCTTGTC+AGG | 0.388987 | 3_1:-69606627 | None:intergenic |
| AGAGGGGCTAGGAGGATTCT+TGG | 0.392921 | 3_1:-69604898 | None:intergenic |
| CTAAAGGAGGAAGGCCAAAA+AGG | 0.396329 | 3_1:+69606502 | Msa0371460:CDS |
| CATGCTGCTTGTAGGCTAAT+GGG | 0.400385 | 3_1:+69605069 | Msa0371460:CDS |
| ATCATCAGCTTTCCAGCATC+AGG | 0.410129 | 3_1:+69603832 | Msa0371460:CDS |
| TCTAGAAGATAGTGTCTCTC+TGG | 0.413955 | 3_1:-69603790 | None:intergenic |
| TGGCTATTCTGGCAACACTT+TGG | 0.417209 | 3_1:+69604713 | Msa0371460:CDS |
| TGCTACAAGGAGAGAAAATT+GGG | 0.419960 | 3_1:+69604834 | Msa0371460:CDS |
| TCACATTTATTACACAATAT+AGG | 0.422806 | 3_1:-69606963 | None:intergenic |
| AACGAAGATTGGATTAAGAT+AGG | 0.426436 | 3_1:+69606393 | Msa0371460:CDS |
| TGAGAAAGATGAGGTTGATA+AGG | 0.427252 | 3_1:+69606695 | Msa0371460:CDS |
| GTACAGAGGCTAGAACTTGC+AGG | 0.431181 | 3_1:+69606309 | Msa0371460:CDS |
| CTAGCCTCTGTACATTTGCT+TGG | 0.431295 | 3_1:-69606299 | None:intergenic |
| TGTTGTGTACTTAGACCAAC+TGG | 0.432263 | 3_1:+69605341 | Msa0371460:CDS |
| CTAATTACTATAGACATTCA+AGG | 0.443986 | 3_1:+69606454 | Msa0371460:CDS |
| ATTATACTAATATAGTACTT+TGG | 0.447774 | 3_1:+69606867 | Msa0371460:three_prime_UTR |
| AAGAAGCAGATAGTGTTTGC+AGG | 0.453653 | 3_1:+69604670 | Msa0371460:CDS |
| ATGACCTGCAGAATTGCATC+AGG | 0.455008 | 3_1:-69605216 | None:intergenic |
| TTTCGTTCACTTAAAAGCAT+TGG | 0.464216 | 3_1:+69603916 | Msa0371460:CDS |
| GATTGTTCTTTATGGTCTGT+TGG | 0.470082 | 3_1:-69606777 | None:intergenic |
| TCTTTGAAAGCACCTGATGC+TGG | 0.472238 | 3_1:-69603844 | None:intergenic |
| CAATGAATATGTAGGTGGAT+AGG | 0.474650 | 3_1:+69604635 | Msa0371460:intron |
| AATGAATATGTAGGTGGATA+GGG | 0.479173 | 3_1:+69604636 | Msa0371460:intron |
| CATTATGAGAAGAGGGATGA+AGG | 0.484238 | 3_1:+69606552 | Msa0371460:CDS |
| AGGTTATTACGATGCATTCA+AGG | 0.484769 | 3_1:+69606254 | Msa0371460:CDS |
| AATATGTGATTTCCAACTAA+AGG | 0.485127 | 3_1:-69604805 | None:intergenic |
| TGGATTCTACGTTTGTTAAG+TGG | 0.487040 | 3_1:+69606742 | Msa0371460:CDS |
| AACATAGCCTTAAATGACCT+TGG | 0.489141 | 3_1:+69605417 | Msa0371460:CDS |
| TGCACTACAAGTGGCGATGA+AGG | 0.491111 | 3_1:+69605171 | Msa0371460:CDS |
| GTGTTTGCAGGACACTCGTC+TGG | 0.495509 | 3_1:+69604682 | Msa0371460:CDS |
| GCAGAAAATGTAAGTTCCAA+AGG | 0.507553 | 3_1:-69605151 | None:intergenic |
| CACAGGTGCTGCTTATCCAC+TGG | 0.507899 | 3_1:+69606828 | Msa0371460:three_prime_UTR |
| GTTGGAACATTATGAGAAGA+GGG | 0.510509 | 3_1:+69606545 | Msa0371460:CDS |
| GGAAAAGGTTGAGGCCTTGG+AGG | 0.513965 | 3_1:+69606653 | Msa0371460:CDS |
| TTCATGAGCGAATCGAGTCT+TGG | 0.516950 | 3_1:+69604982 | Msa0371460:CDS |
| GAAGTAGTATGCTCAGACAA+AGG | 0.517071 | 3_1:-69605372 | None:intergenic |
| CCAGTTCAAAATGTTGTCGC+AGG | 0.517117 | 3_1:-69605296 | None:intergenic |
| AATTGGCCAACTGGCCAACC+AGG | 0.519323 | 3_1:+69603523 | None:intergenic |
| AGTGTGAGCTATAGTGCAGT+TGG | 0.524340 | 3_1:+69606897 | Msa0371460:three_prime_UTR |
| AGATAGCCGCTGTGGAGGAT+AGG | 0.526622 | 3_1:+69606184 | Msa0371460:CDS |
| TTTGGTCGAAAGAAGATAGA+GGG | 0.526898 | 3_1:-69604915 | None:intergenic |
| TGGTAACAATGAAGCTGCTA+AGG | 0.528491 | 3_1:+69603936 | Msa0371460:CDS |
| GCTAGAACTTGCAGGAGTAT+GGG | 0.533503 | 3_1:+69606317 | Msa0371460:CDS |
| CGAAAGAAGATAGAGGGGCT+AGG | 0.533531 | 3_1:-69604909 | None:intergenic |
| AGATGTTAAGGAAAAGGTTG+AGG | 0.536212 | 3_1:+69606644 | Msa0371460:CDS |
| AAACCCTGATGCAATTCTGC+AGG | 0.542505 | 3_1:+69605212 | Msa0371460:CDS |
| ATTCTACGTTTGTTAAGTGG+TGG | 0.545586 | 3_1:+69606745 | Msa0371460:CDS |
| GGACGTGTTTATATGGCTAA+AGG | 0.547868 | 3_1:+69606486 | Msa0371460:CDS |
| AGCCTTAAATGACCTTGGCC+TGG | 0.548198 | 3_1:+69605422 | Msa0371460:CDS |
| TAGGTATACACAAAGATGGT+TGG | 0.548252 | 3_1:+69606527 | Msa0371460:CDS |
| GGAGGATAGGATGAAAGCAC+TGG | 0.548822 | 3_1:+69606197 | Msa0371460:CDS |
| CAGAAAATGTAAGTTCCAAA+GGG | 0.551969 | 3_1:-69605150 | None:intergenic |
| GAAAAGGTTGAGGCCTTGGA+GGG | 0.556071 | 3_1:+69606654 | Msa0371460:CDS |
| AACTTCCAGAAGACTTAGAA+GGG | 0.561390 | 3_1:+69606370 | Msa0371460:CDS |
| GGTATAGGTATACACAAAGA+TGG | 0.561423 | 3_1:+69606523 | Msa0371460:CDS |
| AAGCTCTGAAGAAGAAGCTG+AGG | 0.562108 | 3_1:+69605257 | Msa0371460:CDS |
| GGTTGGAACATTATGAGAAG+AGG | 0.569597 | 3_1:+69606544 | Msa0371460:CDS |
| CAAAAGTAATGCAGATGGGA+GGG | 0.576141 | 3_1:-69604777 | None:intergenic |
| AAGCTGATGATAACTTCTGA+AGG | 0.579352 | 3_1:-69603820 | None:intergenic |
| AAAAGCATATGTCTTCAACT+TGG | 0.579608 | 3_1:+69603597 | Msa0371460:five_prime_UTR |
| ATGGCTTCATCAAGAGGTGG+TGG | 0.580077 | 3_1:+69603697 | Msa0371460:CDS |
| AGAACCAAAAGTAATGCAGA+TGG | 0.587556 | 3_1:-69604782 | None:intergenic |
| AAGGGTCTATAAGGACTCAA+AGG | 0.589494 | 3_1:-69605132 | None:intergenic |
| TTATAACTGCATTAATCCAG+TGG | 0.589743 | 3_1:-69606844 | None:intergenic |
| AAAGTCATCACTTGAAGATG+AGG | 0.590426 | 3_1:+69603999 | Msa0371460:CDS |
| TGGAGGGATTTATAAGCAAG+TGG | 0.596588 | 3_1:+69606670 | Msa0371460:CDS |
| ACAGACATGGCTTCATCAAG+AGG | 0.598028 | 3_1:+69603691 | Msa0371460:exon |
| ACAAAAGATAGCCGCTGTGG+AGG | 0.604033 | 3_1:+69606179 | Msa0371460:CDS |
| CAGCTGCAGCATTAGAGGAA+CGG | 0.605468 | 3_1:+69606130 | Msa0371460:CDS |
| CTGAAACACACACACAGACA+TGG | 0.605687 | 3_1:+69603678 | Msa0371460:exon |
| AAAGGTTGCATACCAGGCCA+AGG | 0.614366 | 3_1:-69605434 | None:intergenic |
| AGTGTTGCCAGAATAGCCAC+TGG | 0.614618 | 3_1:-69604709 | None:intergenic |
| GGACAGTTACAGAGAAACGC+GGG | 0.617330 | 3_1:+69606218 | Msa0371460:CDS |
| CGTGTTTATATGGCTAAAGG+AGG | 0.625592 | 3_1:+69606489 | Msa0371460:CDS |
| TTTATATGGCTAAAGGAGGA+AGG | 0.625809 | 3_1:+69606493 | Msa0371460:CDS |
| CCAAAAGTAATGCAGATGGG+AGG | 0.626384 | 3_1:-69604778 | None:intergenic |
| CCATATAAACACGTCCATCA+CGG | 0.630887 | 3_1:-69606479 | None:intergenic |
| AAGAAGATAGAGGGGCTAGG+AGG | 0.631591 | 3_1:-69604906 | None:intergenic |
| GTCTTGTTGAAGTGTGACAC+AGG | 0.632853 | 3_1:+69606811 | Msa0371460:exon |
| TATGAGAAGAGGGATGAAGG+TGG | 0.634440 | 3_1:+69606555 | Msa0371460:CDS |
| TTTGCAGGACACTCGTCTGG+TGG | 0.640829 | 3_1:+69604685 | Msa0371460:CDS |
| ACACTCGTCTGGTGGTCCAG+TGG | 0.641162 | 3_1:+69604693 | Msa0371460:CDS |
| AGACATTCAAGGAACCGTGA+TGG | 0.644212 | 3_1:+69606465 | Msa0371460:CDS |
| GAACCAAAAGTAATGCAGAT+GGG | 0.645149 | 3_1:-69604781 | None:intergenic |
| TTGGTCGAAAGAAGATAGAG+GGG | 0.649917 | 3_1:-69604914 | None:intergenic |
| TCTGAGCATACTACTTCAGG+TGG | 0.659119 | 3_1:+69605378 | Msa0371460:CDS |
| CTTGCTTATAAATCCCTCCA+AGG | 0.659517 | 3_1:-69606667 | None:intergenic |
| TGAGCTATATCTTGTTTGTG+AGG | 0.662845 | 3_1:+69606983 | Msa0371460:three_prime_UTR |
| GCAGATGGGAGGGATACGAT+CGG | 0.665165 | 3_1:-69604767 | None:intergenic |
| TAGTAATTAGCAATATCCAA+AGG | 0.665329 | 3_1:-69606441 | None:intergenic |
| GACATGGCTTCATCAAGAGG+TGG | 0.668704 | 3_1:+69603694 | Msa0371460:exon |
| TGACCTGCAGAATTGCATCA+GGG | 0.674595 | 3_1:-69605215 | None:intergenic |
| GCTACAAAAGATAGCCGCTG+TGG | 0.677260 | 3_1:+69606176 | Msa0371460:CDS |
| ATTCAAGGATCAATTAGACC+CGG | 0.679489 | 3_1:+69606269 | Msa0371460:CDS |
| ATTTCCAAGCAAATGTACAG+AGG | 0.698435 | 3_1:+69606295 | Msa0371460:CDS |
| TGGACAGTTACAGAGAAACG+CGG | 0.726781 | 3_1:+69606217 | Msa0371460:CDS |
| CAAGTGGCATGAGAAAGATG+AGG | 0.743185 | 3_1:+69606686 | Msa0371460:CDS |
| GACAGTTACAGAGAAACGCG+GGG | 0.746046 | 3_1:+69606219 | Msa0371460:CDS |
| TTTCATCCTATCCTCCACAG+CGG | 0.790893 | 3_1:-69606190 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAACATATTTAATAACT+CGG | + | chr3_1:69604482-69604501 | Msa0371460:intron | 10.0% |
| !!! | CTTTTTTTATCATATTGTTT+AGG | - | chr3_1:69603582-69603601 | None:intergenic | 15.0% |
| !!! | ACAAAATTAATTTTCAACTT+AGG | - | chr3_1:69604249-69604268 | None:intergenic | 15.0% |
| !! | AAAAACATATTTAATAACTC+GGG | + | chr3_1:69604483-69604502 | Msa0371460:intron | 15.0% |
| !! | ATATATTTCAATGAATATGT+AGG | + | chr3_1:69604627-69604646 | Msa0371460:intron | 15.0% |
| !! | ATATGAGTATATAAAGTAAA+AGG | - | chr3_1:69605535-69605554 | None:intergenic | 15.0% |
| !!! | AATTTGCTTATAAAAAGAAA+CGG | - | chr3_1:69605807-69605826 | None:intergenic | 15.0% |
| !!! | ATAAGCAAATTTTACTTTTT+AGG | - | chr3_1:69605709-69605728 | None:intergenic | 15.0% |
| !!! | AATTTGCTTATAAAAAGAAA+CGG | + | chr3_1:69605807-69605826 | Msa0371460:intron | 15.0% |
| !! | ATTATACTAATATAGTACTT+TGG | + | chr3_1:69606867-69606886 | Msa0371460:three_prime_UTR | 15.0% |
| !! | TTTGCATAATAGATCATAAA+TGG | - | chr3_1:69604061-69604080 | None:intergenic | 20.0% |
| !! | TTAAGTATAGATGCTATAAA+AGG | - | chr3_1:69604105-69604124 | None:intergenic | 20.0% |
| !!! | AAACTAATATTGAGTTGTTT+TGG | - | chr3_1:69604156-69604175 | None:intergenic | 20.0% |
| !!! | AATGTCATGTATAATTTGTT+GGG | + | chr3_1:69604406-69604425 | Msa0371460:intron | 20.0% |
| !!! | CTTTAAAATCGACAAAAATA+GGG | - | chr3_1:69605466-69605485 | None:intergenic | 20.0% |
| !!! | ACTTTAAAATCGACAAAAAT+AGG | - | chr3_1:69605467-69605486 | None:intergenic | 20.0% |
| !! | CATTCAATTAATAATGTATG+TGG | + | chr3_1:69605734-69605753 | Msa0371460:intron | 20.0% |
| !! | CATAATCAGATATAATTGAA+TGG | + | chr3_1:69605841-69605860 | Msa0371460:intron | 20.0% |
| !! | TCACATTTATTACACAATAT+AGG | - | chr3_1:69606966-69606985 | None:intergenic | 20.0% |
| ! | CCAAAATATCTTTGAATCTT+TGG | - | chr3_1:69603978-69603997 | None:intergenic | 25.0% |
| !! | CCAAAGATTCAAAGATATTT+TGG | + | chr3_1:69603975-69603994 | Msa0371460:CDS | 25.0% |
| !!! | CATTTTTAGCATTAAGGATA+GGG | - | chr3_1:69604131-69604150 | None:intergenic | 25.0% |
| !!! | TCATTTTTAGCATTAAGGAT+AGG | - | chr3_1:69604132-69604151 | None:intergenic | 25.0% |
| !!! | TTGGTTCATTTTTAGCATTA+AGG | - | chr3_1:69604137-69604156 | None:intergenic | 25.0% |
| ! | TTAACATTAGAGACTCAATT+AGG | + | chr3_1:69604175-69604194 | Msa0371460:intron | 25.0% |
| !! | CAATGTCATGTATAATTTGT+TGG | + | chr3_1:69604405-69604424 | Msa0371460:intron | 25.0% |
| !!! | ATCACATGGATTTGTTAAAA+AGG | + | chr3_1:69604571-69604590 | Msa0371460:intron | 25.0% |
| ! | TATTTCAATGAATATGTAGG+TGG | + | chr3_1:69604630-69604649 | Msa0371460:intron | 25.0% |
| ! | AATATGTGATTTCCAACTAA+AGG | - | chr3_1:69604808-69604827 | None:intergenic | 25.0% |
| ! | TTTGAACTGGTAAAAAACTT+TGG | + | chr3_1:69605309-69605328 | Msa0371460:CDS | 25.0% |
| ! | AATCAGATATGTCACTAATA+TGG | - | chr3_1:69605579-69605598 | None:intergenic | 25.0% |
| ! | GGAGTAATTTATTAGACATA+AGG | - | chr3_1:69605675-69605694 | None:intergenic | 25.0% |
| ! | CATTCAATTAATGATGTATG+TGG | - | chr3_1:69605773-69605792 | None:intergenic | 25.0% |
| ! | TCTCATGTATTATGTATGAT+AGG | - | chr3_1:69605920-69605939 | None:intergenic | 25.0% |
| !!! | TGCTATTTTTTCATGTTCAA+TGG | - | chr3_1:69606032-69606051 | None:intergenic | 25.0% |
| ! | TAGTAATTAGCAATATCCAA+AGG | - | chr3_1:69606444-69606463 | None:intergenic | 25.0% |
| ! | CTAATTACTATAGACATTCA+AGG | + | chr3_1:69606454-69606473 | Msa0371460:CDS | 25.0% |
| !! | TTACTCAGAATCATGTTTTT+GGG | + | chr3_1:69606578-69606597 | Msa0371460:CDS | 25.0% |
| !! | TTTTCCTTAACATCTTCAAA+AGG | - | chr3_1:69606639-69606658 | None:intergenic | 25.0% |
| !!! | TTTTGAAGATGTTAAGGAAA+AGG | + | chr3_1:69606638-69606657 | Msa0371460:CDS | 25.0% |
| ! | TAATGCATGATTGTTCTTTA+TGG | - | chr3_1:69606788-69606807 | None:intergenic | 25.0% |
| !! | CTTTGTTTGGTTATGTAATA+AGG | + | chr3_1:69606928-69606947 | Msa0371460:three_prime_UTR | 25.0% |
| !!! | TACAGTCTCAGTTTTTTAAT+AGG | + | chr3_1:69607032-69607051 | Msa0371460:three_prime_UTR | 25.0% |
| TTGACTTAAAAACTTGAACC+TGG | - | chr3_1:69603544-69603563 | None:intergenic | 30.0% | |
| ! | AAAAGCATATGTCTTCAACT+TGG | + | chr3_1:69603597-69603616 | Msa0371460:five_prime_UTR | 30.0% |
| !!! | CTTGCTTCTTGTTTTTTCTT+TGG | - | chr3_1:69603645-69603664 | None:intergenic | 30.0% |
| ! | TGGTATTCCAAAACAACTTT+TGG | + | chr3_1:69603868-69603887 | Msa0371460:CDS | 30.0% |
| ! | AGTTTCACCAAAAGTTGTTT+TGG | - | chr3_1:69603878-69603897 | None:intergenic | 30.0% |
| ! | TTTCGTTCACTTAAAAGCAT+TGG | + | chr3_1:69603916-69603935 | Msa0371460:CDS | 30.0% |
| ATTTGATTCATGTACCAAGT+TGG | - | chr3_1:69604213-69604232 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTAGTCCCTCTTTA+AGG | + | chr3_1:69604369-69604388 | Msa0371460:intron | 30.0% |
| ! | ATACTTTTGGTCCTTAAAGA+GGG | - | chr3_1:69604383-69604402 | None:intergenic | 30.0% |
| ! | ACATGACATTGACATACTTT+TGG | - | chr3_1:69604396-69604415 | None:intergenic | 30.0% |
| TGACACTATCAAATATCACA+TGG | + | chr3_1:69604557-69604576 | Msa0371460:intron | 30.0% | |
| AATGAATATGTAGGTGGATA+GGG | + | chr3_1:69604636-69604655 | Msa0371460:intron | 30.0% | |
| ! | ACATATTTTCTCATGCTACA+AGG | + | chr3_1:69604821-69604840 | Msa0371460:CDS | 30.0% |
| TCATCACAAAATGGAAGAAA+TGG | - | chr3_1:69604864-69604883 | None:intergenic | 30.0% | |
| TGTCATATCTCATCACAAAA+TGG | - | chr3_1:69604873-69604892 | None:intergenic | 30.0% | |
| ! | GTGCAACTGTTTCAAATTTT+TGG | - | chr3_1:69604936-69604955 | None:intergenic | 30.0% |
| !!! | CTCATGAATGATTTGCTTTT+GGG | - | chr3_1:69604970-69604989 | None:intergenic | 30.0% |
| CAGAAAATGTAAGTTCCAAA+GGG | - | chr3_1:69605153-69605172 | None:intergenic | 30.0% | |
| ! | GTCATTTAAGGCTATGTTAA+TGG | - | chr3_1:69605415-69605434 | None:intergenic | 30.0% |
| ACAAAAATAGGGAAGGATAA+AGG | - | chr3_1:69605455-69605474 | None:intergenic | 30.0% | |
| AAAATCGACAAAAATAGGGA+AGG | - | chr3_1:69605462-69605481 | None:intergenic | 30.0% | |
| TGCTTATAAAAAGAAACGGA+GGG | - | chr3_1:69605811-69605830 | None:intergenic | 30.0% | |
| TTGCTTATAAAAAGAAACGG+AGG | - | chr3_1:69605810-69605829 | None:intergenic | 30.0% | |
| TTGCTTATAAAAAGAAACGG+AGG | + | chr3_1:69605810-69605829 | Msa0371460:intron | 30.0% | |
| TGCTTATAAAAAGAAACGGA+GGG | + | chr3_1:69605811-69605830 | Msa0371460:intron | 30.0% | |
| AACGAAGATTGGATTAAGAT+AGG | + | chr3_1:69606393-69606412 | Msa0371460:CDS | 30.0% | |
| ! | TGTGTATACCTATACCTTTT+TGG | - | chr3_1:69606519-69606538 | None:intergenic | 30.0% |
| ! | GTTACTCAGAATCATGTTTT+TGG | + | chr3_1:69606577-69606596 | Msa0371460:CDS | 30.0% |
| !!! | GTTTAAGGATGTGTTTTTAG+TGG | + | chr3_1:69606722-69606741 | Msa0371460:CDS | 30.0% |
| TTATAACTGCATTAATCCAG+TGG | - | chr3_1:69606847-69606866 | None:intergenic | 30.0% | |
| CTTAAAAACTTGAACCTGGT+TGG | - | chr3_1:69603540-69603559 | None:intergenic | 35.0% | |
| AAGCTGATGATAACTTCTGA+AGG | - | chr3_1:69603823-69603842 | None:intergenic | 35.0% | |
| AAAGTCATCACTTGAAGATG+AGG | + | chr3_1:69603999-69604018 | Msa0371460:CDS | 35.0% | |
| GGCAATTTATTTGTCCAACT+TGG | + | chr3_1:69604196-69604215 | Msa0371460:intron | 35.0% | |
| ACTTGCAGGAACTAAAAAGT+AGG | - | chr3_1:69604338-69604357 | None:intergenic | 35.0% | |
| ! | CATACTTTTGGTCCTTAAAG+AGG | - | chr3_1:69604384-69604403 | None:intergenic | 35.0% |
| !! | AATTTGTTGGGAGTGAAAAC+TGG | + | chr3_1:69604418-69604437 | Msa0371460:intron | 35.0% |
| ! | ATTTGTTGGGAGTGAAAACT+GGG | + | chr3_1:69604419-69604438 | Msa0371460:intron | 35.0% |
| CAATGAATATGTAGGTGGAT+AGG | + | chr3_1:69604635-69604654 | Msa0371460:intron | 35.0% | |
| ! | TGGAGTTGGAAAGTTTTCTA+AGG | - | chr3_1:69604740-69604759 | None:intergenic | 35.0% |
| GAACCAAAAGTAATGCAGAT+GGG | - | chr3_1:69604784-69604803 | None:intergenic | 35.0% | |
| AGAACCAAAAGTAATGCAGA+TGG | - | chr3_1:69604785-69604804 | None:intergenic | 35.0% | |
| !!! | ACTTTTGGTTCTCCTTTAGT+TGG | + | chr3_1:69604793-69604812 | Msa0371460:CDS | 35.0% |
| ATGCTACAAGGAGAGAAAAT+TGG | + | chr3_1:69604833-69604852 | Msa0371460:CDS | 35.0% | |
| TGCTACAAGGAGAGAAAATT+GGG | + | chr3_1:69604834-69604853 | Msa0371460:CDS | 35.0% | |
| TTTGGTCGAAAGAAGATAGA+GGG | - | chr3_1:69604918-69604937 | None:intergenic | 35.0% | |
| ! | TTTTGGTCGAAAGAAGATAG+AGG | - | chr3_1:69604919-69604938 | None:intergenic | 35.0% |
| !!! | GCTCATGAATGATTTGCTTT+TGG | - | chr3_1:69604971-69604990 | None:intergenic | 35.0% |
| TAAGTTCCAAAGGGTCTATA+AGG | - | chr3_1:69605144-69605163 | None:intergenic | 35.0% | |
| GCAGAAAATGTAAGTTCCAA+AGG | - | chr3_1:69605154-69605173 | None:intergenic | 35.0% | |
| ! | TACATTTTCTGCACTACAAG+TGG | + | chr3_1:69605162-69605181 | Msa0371460:CDS | 35.0% |
| ! | ACAAAGGAAGATTTTCCAGT+TGG | - | chr3_1:69605359-69605378 | None:intergenic | 35.0% |
| ! | AACATAGCCTTAAATGACCT+TGG | + | chr3_1:69605417-69605436 | Msa0371460:CDS | 35.0% |
| GTGTAATGCATATAACAGCA+TGG | - | chr3_1:69605972-69605991 | None:intergenic | 35.0% | |
| GTTATATGCATTACACACCT+TGG | + | chr3_1:69605976-69605995 | Msa0371460:intron | 35.0% | |
| ACATAGTTTCATTTCCACCA+AGG | - | chr3_1:69605996-69606015 | None:intergenic | 35.0% | |
| AGGTTATTACGATGCATTCA+AGG | + | chr3_1:69606254-69606273 | Msa0371460:CDS | 35.0% | |
| ATTCAAGGATCAATTAGACC+CGG | + | chr3_1:69606269-69606288 | Msa0371460:CDS | 35.0% | |
| ACATTTGCTTGGAAATCTTC+CGG | - | chr3_1:69606291-69606310 | None:intergenic | 35.0% | |
| ATTTCCAAGCAAATGTACAG+AGG | + | chr3_1:69606295-69606314 | Msa0371460:CDS | 35.0% | |
| AACTTCCAGAAGACTTAGAA+GGG | + | chr3_1:69606370-69606389 | Msa0371460:CDS | 35.0% | |
| TTTATATGGCTAAAGGAGGA+AGG | + | chr3_1:69606493-69606512 | Msa0371460:CDS | 35.0% | |
| GGTATAGGTATACACAAAGA+TGG | + | chr3_1:69606523-69606542 | Msa0371460:CDS | 35.0% | |
| TAGGTATACACAAAGATGGT+TGG | + | chr3_1:69606527-69606546 | Msa0371460:CDS | 35.0% | |
| GTTGGAACATTATGAGAAGA+GGG | + | chr3_1:69606545-69606564 | Msa0371460:CDS | 35.0% | |
| !! | CAAGCCTTTTGAAGATGTTA+AGG | + | chr3_1:69606632-69606651 | Msa0371460:CDS | 35.0% |
| AGATGTTAAGGAAAAGGTTG+AGG | + | chr3_1:69606644-69606663 | Msa0371460:CDS | 35.0% | |
| !! | TGAGAAAGATGAGGTTGATA+AGG | + | chr3_1:69606695-69606714 | Msa0371460:CDS | 35.0% |
| !! | GGTTGATAAGGATGTGTTTA+AGG | + | chr3_1:69606707-69606726 | Msa0371460:CDS | 35.0% |
| ! | TGGATTCTACGTTTGTTAAG+TGG | + | chr3_1:69606742-69606761 | Msa0371460:CDS | 35.0% |
| ! | ATTCTACGTTTGTTAAGTGG+TGG | + | chr3_1:69606745-69606764 | Msa0371460:CDS | 35.0% |
| GATTGTTCTTTATGGTCTGT+TGG | - | chr3_1:69606780-69606799 | None:intergenic | 35.0% | |
| ! | TGAGCTATATCTTGTTTGTG+AGG | + | chr3_1:69606983-69607002 | Msa0371460:three_prime_UTR | 35.0% |
| TCTAGAAGATAGTGTCTCTC+TGG | - | chr3_1:69603793-69603812 | None:intergenic | 40.0% | |
| CATCAGGTGCTTTCAAAGAT+TGG | + | chr3_1:69603848-69603867 | Msa0371460:CDS | 40.0% | |
| TGGTAACAATGAAGCTGCTA+AGG | + | chr3_1:69603936-69603955 | Msa0371460:CDS | 40.0% | |
| ! | CATGCAACTTTGTAACTTGC+AGG | - | chr3_1:69604352-69604371 | None:intergenic | 40.0% |
| AAGAAGCAGATAGTGTTTGC+AGG | + | chr3_1:69604670-69604689 | Msa0371460:CDS | 40.0% | |
| CAAAAGTAATGCAGATGGGA+GGG | - | chr3_1:69604780-69604799 | None:intergenic | 40.0% | |
| TTGGTCGAAAGAAGATAGAG+GGG | - | chr3_1:69604917-69604936 | None:intergenic | 40.0% | |
| AAGGGTCTATAAGGACTCAA+AGG | - | chr3_1:69605135-69605154 | None:intergenic | 40.0% | |
| TTGAGTCCTTATAGACCCTT+TGG | + | chr3_1:69605135-69605154 | Msa0371460:CDS | 40.0% | |
| ! | ATGTTGTCGCAGGCTTTTAA+GGG | - | chr3_1:69605289-69605308 | None:intergenic | 40.0% |
| ! | AATGTTGTCGCAGGCTTTTA+AGG | - | chr3_1:69605290-69605309 | None:intergenic | 40.0% |
| TGTTGTGTACTTAGACCAAC+TGG | + | chr3_1:69605341-69605360 | Msa0371460:CDS | 40.0% | |
| GAAGTAGTATGCTCAGACAA+AGG | - | chr3_1:69605375-69605394 | None:intergenic | 40.0% | |
| TTGTCTGAGCATACTACTTC+AGG | + | chr3_1:69605375-69605394 | Msa0371460:CDS | 40.0% | |
| AAGGATAAAGGTTGCATACC+AGG | - | chr3_1:69605443-69605462 | None:intergenic | 40.0% | |
| ATATGCATTACACACCTTGG+TGG | + | chr3_1:69605979-69605998 | Msa0371460:intron | 40.0% | |
| CATTTGCTTGGAAATCTTCC+GGG | - | chr3_1:69606290-69606309 | None:intergenic | 40.0% | |
| GAACTTCCAGAAGACTTAGA+AGG | + | chr3_1:69606369-69606388 | Msa0371460:CDS | 40.0% | |
| ACTTAGAAGGGAACGAAGAT+TGG | + | chr3_1:69606382-69606401 | Msa0371460:CDS | 40.0% | |
| ! | TAGAAGACTAGTTGAGCCTT+TGG | + | chr3_1:69606425-69606444 | Msa0371460:CDS | 40.0% |
| CCATATAAACACGTCCATCA+CGG | - | chr3_1:69606482-69606501 | None:intergenic | 40.0% | |
| GGACGTGTTTATATGGCTAA+AGG | + | chr3_1:69606486-69606505 | Msa0371460:CDS | 40.0% | |
| CGTGTTTATATGGCTAAAGG+AGG | + | chr3_1:69606489-69606508 | Msa0371460:CDS | 40.0% | |
| GGTTGGAACATTATGAGAAG+AGG | + | chr3_1:69606544-69606563 | Msa0371460:CDS | 40.0% | |
| CATTATGAGAAGAGGGATGA+AGG | + | chr3_1:69606552-69606571 | Msa0371460:CDS | 40.0% | |
| !!! | ATCATGTTTTTGGGCTGAAG+TGG | + | chr3_1:69606587-69606606 | Msa0371460:CDS | 40.0% |
| ACATCTTCAAAAGGCTTGTC+AGG | - | chr3_1:69606630-69606649 | None:intergenic | 40.0% | |
| CTTGCTTATAAATCCCTCCA+AGG | - | chr3_1:69606670-69606689 | None:intergenic | 40.0% | |
| TGGAGGGATTTATAAGCAAG+TGG | + | chr3_1:69606670-69606689 | Msa0371460:CDS | 40.0% | |
| GTTGGATCATGCACTTTGTT+TGG | + | chr3_1:69606915-69606934 | Msa0371460:three_prime_UTR | 40.0% | |
| CTGAAACACACACACAGACA+TGG | + | chr3_1:69603678-69603697 | Msa0371460:exon | 45.0% | |
| ACAGACATGGCTTCATCAAG+AGG | + | chr3_1:69603691-69603710 | Msa0371460:exon | 45.0% | |
| GTCATTTGATGCGTCCTTGA+AGG | + | chr3_1:69603756-69603775 | Msa0371460:CDS | 45.0% | |
| TGGTTTCTTGTGAGCCTTCA+AGG | - | chr3_1:69603773-69603792 | None:intergenic | 45.0% | |
| ATCATCAGCTTTCCAGCATC+AGG | + | chr3_1:69603832-69603851 | Msa0371460:CDS | 45.0% | |
| !! | TCTTTGAAAGCACCTGATGC+TGG | - | chr3_1:69603847-69603866 | None:intergenic | 45.0% |
| TGGGAGTGAAAACTGGGTAT+AGG | + | chr3_1:69604425-69604444 | Msa0371460:intron | 45.0% | |
| GGGAGTGAAAACTGGGTATA+GGG | + | chr3_1:69604426-69604445 | Msa0371460:intron | 45.0% | |
| TGGCTATTCTGGCAACACTT+TGG | + | chr3_1:69604713-69604732 | Msa0371460:CDS | 45.0% | |
| GGCTATTCTGGCAACACTTT+GGG | + | chr3_1:69604714-69604733 | Msa0371460:CDS | 45.0% | |
| !!! | CGATCGGAAGATTTTGGAGT+TGG | - | chr3_1:69604754-69604773 | None:intergenic | 45.0% |
| ! | GGGATACGATCGGAAGATTT+TGG | - | chr3_1:69604760-69604779 | None:intergenic | 45.0% |
| CCAAAAGTAATGCAGATGGG+AGG | - | chr3_1:69604781-69604800 | None:intergenic | 45.0% | |
| ! | CCTCCCATCTGCATTACTTT+TGG | + | chr3_1:69604778-69604797 | Msa0371460:CDS | 45.0% |
| TTCATGAGCGAATCGAGTCT+TGG | + | chr3_1:69604982-69605001 | Msa0371460:CDS | 45.0% | |
| ! | TCACAAGACATGCTGCTTGT+AGG | + | chr3_1:69605061-69605080 | Msa0371460:CDS | 45.0% |
| ! | ACATGCTGCTTGTAGGCTAA+TGG | + | chr3_1:69605068-69605087 | Msa0371460:CDS | 45.0% |
| ! | CATGCTGCTTGTAGGCTAAT+GGG | + | chr3_1:69605069-69605088 | Msa0371460:CDS | 45.0% |
| AAACCCTGATGCAATTCTGC+AGG | + | chr3_1:69605212-69605231 | Msa0371460:CDS | 45.0% | |
| TGACCTGCAGAATTGCATCA+GGG | - | chr3_1:69605218-69605237 | None:intergenic | 45.0% | |
| ATGACCTGCAGAATTGCATC+AGG | - | chr3_1:69605219-69605238 | None:intergenic | 45.0% | |
| !! | AAGCTCTGAAGAAGAAGCTG+AGG | + | chr3_1:69605257-69605276 | Msa0371460:CDS | 45.0% |
| ! | TGTTGTCGCAGGCTTTTAAG+GGG | - | chr3_1:69605288-69605307 | None:intergenic | 45.0% |
| CCAGTTCAAAATGTTGTCGC+AGG | - | chr3_1:69605299-69605318 | None:intergenic | 45.0% | |
| ! | CCTGCGACAACATTTTGAAC+TGG | + | chr3_1:69605296-69605315 | Msa0371460:CDS | 45.0% |
| TCTGAGCATACTACTTCAGG+TGG | + | chr3_1:69605378-69605397 | Msa0371460:CDS | 45.0% | |
| TACCAGGCCAAGGTCATTTA+AGG | - | chr3_1:69605427-69605446 | None:intergenic | 45.0% | |
| TTTCATCCTATCCTCCACAG+CGG | - | chr3_1:69606193-69606212 | None:intergenic | 45.0% | |
| TGGACAGTTACAGAGAAACG+CGG | + | chr3_1:69606217-69606236 | Msa0371460:CDS | 45.0% | |
| CTAGCCTCTGTACATTTGCT+TGG | - | chr3_1:69606302-69606321 | None:intergenic | 45.0% | |
| ! | GCTAGAACTTGCAGGAGTAT+GGG | + | chr3_1:69606317-69606336 | Msa0371460:CDS | 45.0% |
| TCGTTCCCTTCTAAGTCTTC+TGG | - | chr3_1:69606378-69606397 | None:intergenic | 45.0% | |
| AGACATTCAAGGAACCGTGA+TGG | + | chr3_1:69606465-69606484 | Msa0371460:CDS | 45.0% | |
| !! | CCGTGATGGACGTGTTTATA+TGG | + | chr3_1:69606479-69606498 | Msa0371460:CDS | 45.0% |
| CTAAAGGAGGAAGGCCAAAA+AGG | + | chr3_1:69606502-69606521 | Msa0371460:CDS | 45.0% | |
| ! | GAGGAAGGCCAAAAAGGTAT+AGG | + | chr3_1:69606508-69606527 | Msa0371460:CDS | 45.0% |
| TATGAGAAGAGGGATGAAGG+TGG | + | chr3_1:69606555-69606574 | Msa0371460:CDS | 45.0% | |
| !!! | ATGTTTTTGGGCTGAAGTGG+AGG | + | chr3_1:69606590-69606609 | Msa0371460:CDS | 45.0% |
| TAAGGAAAAGGTTGAGGCCT+TGG | + | chr3_1:69606650-69606669 | Msa0371460:CDS | 45.0% | |
| CAAGTGGCATGAGAAAGATG+AGG | + | chr3_1:69606686-69606705 | Msa0371460:CDS | 45.0% | |
| ! | GTCTTGTTGAAGTGTGACAC+AGG | + | chr3_1:69606811-69606830 | Msa0371460:exon | 45.0% |
| AGTGTGAGCTATAGTGCAGT+TGG | + | chr3_1:69606897-69606916 | Msa0371460:three_prime_UTR | 45.0% | |
| GACATGGCTTCATCAAGAGG+TGG | + | chr3_1:69603694-69603713 | Msa0371460:exon | 50.0% | |
| ATGGCTTCATCAAGAGGTGG+TGG | + | chr3_1:69603697-69603716 | Msa0371460:CDS | 50.0% | |
| AGTGTTGCCAGAATAGCCAC+TGG | - | chr3_1:69604712-69604731 | None:intergenic | 50.0% | |
| AAGAAGATAGAGGGGCTAGG+AGG | - | chr3_1:69604909-69604928 | None:intergenic | 50.0% | |
| CGAAAGAAGATAGAGGGGCT+AGG | - | chr3_1:69604912-69604931 | None:intergenic | 50.0% | |
| TGCACTACAAGTGGCGATGA+AGG | + | chr3_1:69605171-69605190 | Msa0371460:CDS | 50.0% | |
| AGCCTTAAATGACCTTGGCC+TGG | + | chr3_1:69605422-69605441 | Msa0371460:CDS | 50.0% | |
| AAAGGTTGCATACCAGGCCA+AGG | - | chr3_1:69605437-69605456 | None:intergenic | 50.0% | |
| TCAAGCAGCTGCAGCATTAG+AGG | + | chr3_1:69606125-69606144 | Msa0371460:CDS | 50.0% | |
| CAGCTGCAGCATTAGAGGAA+CGG | + | chr3_1:69606130-69606149 | Msa0371460:CDS | 50.0% | |
| GCTACAAAAGATAGCCGCTG+TGG | + | chr3_1:69606176-69606195 | Msa0371460:CDS | 50.0% | |
| ACAAAAGATAGCCGCTGTGG+AGG | + | chr3_1:69606179-69606198 | Msa0371460:CDS | 50.0% | |
| ! | GGAGGATAGGATGAAAGCAC+TGG | + | chr3_1:69606197-69606216 | Msa0371460:CDS | 50.0% |
| GGACAGTTACAGAGAAACGC+GGG | + | chr3_1:69606218-69606237 | Msa0371460:CDS | 50.0% | |
| GACAGTTACAGAGAAACGCG+GGG | + | chr3_1:69606219-69606238 | Msa0371460:CDS | 50.0% | |
| ACGCGGGGACATCAGAAAAA+AGG | + | chr3_1:69606234-69606253 | Msa0371460:CDS | 50.0% | |
| GTACAGAGGCTAGAACTTGC+AGG | + | chr3_1:69606309-69606328 | Msa0371460:CDS | 50.0% | |
| GGCTAGAACTTGCAGGAGTA+TGG | + | chr3_1:69606316-69606335 | Msa0371460:CDS | 50.0% | |
| GAAAAGGTTGAGGCCTTGGA+GGG | + | chr3_1:69606654-69606673 | Msa0371460:CDS | 50.0% | |
| GTGTTTGCAGGACACTCGTC+TGG | + | chr3_1:69604682-69604701 | Msa0371460:CDS | 55.0% | |
| TTTGCAGGACACTCGTCTGG+TGG | + | chr3_1:69604685-69604704 | Msa0371460:CDS | 55.0% | |
| TGGTGGTCCAGTGGCTATTC+TGG | + | chr3_1:69604702-69604721 | Msa0371460:CDS | 55.0% | |
| GCAGATGGGAGGGATACGAT+CGG | - | chr3_1:69604770-69604789 | None:intergenic | 55.0% | |
| AGAGGGGCTAGGAGGATTCT+TGG | - | chr3_1:69604901-69604920 | None:intergenic | 55.0% | |
| AGATAGCCGCTGTGGAGGAT+AGG | + | chr3_1:69606184-69606203 | Msa0371460:CDS | 55.0% | |
| GGAAAAGGTTGAGGCCTTGG+AGG | + | chr3_1:69606653-69606672 | Msa0371460:CDS | 55.0% | |
| !! | CACAGGTGCTGCTTATCCAC+TGG | + | chr3_1:69606828-69606847 | Msa0371460:three_prime_UTR | 55.0% |
| ACACTCGTCTGGTGGTCCAG+TGG | + | chr3_1:69604693-69604712 | Msa0371460:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 69603535 | 69607055 | 69603535 | ID=Msa0371460;Name=Msa0371460 |
| chr3_1 | mRNA | 69603535 | 69607055 | 69603535 | ID=Msa0371460-mRNA-1;Parent=Msa0371460;Name=Msa0371460-mRNA-1;_AED=0.03;_eAED=0.03;_QI=162|1|1|1|1|1|3|228|614 |
| chr3_1 | exon | 69603535 | 69604020 | 69603535 | ID=Msa0371460-mRNA-1:exon:14875;Parent=Msa0371460-mRNA-1 |
| chr3_1 | exon | 69604649 | 69605443 | 69604649 | ID=Msa0371460-mRNA-1:exon:14876;Parent=Msa0371460-mRNA-1 |
| chr3_1 | exon | 69606102 | 69607055 | 69606102 | ID=Msa0371460-mRNA-1:exon:14877;Parent=Msa0371460-mRNA-1 |
| chr3_1 | five_prime_UTR | 69603535 | 69603696 | 69603535 | ID=Msa0371460-mRNA-1:five_prime_utr;Parent=Msa0371460-mRNA-1 |
| chr3_1 | CDS | 69603697 | 69604020 | 69603697 | ID=Msa0371460-mRNA-1:cds;Parent=Msa0371460-mRNA-1 |
| chr3_1 | CDS | 69604649 | 69605443 | 69604649 | ID=Msa0371460-mRNA-1:cds;Parent=Msa0371460-mRNA-1 |
| chr3_1 | CDS | 69606102 | 69606827 | 69606102 | ID=Msa0371460-mRNA-1:cds;Parent=Msa0371460-mRNA-1 |
| chr3_1 | three_prime_UTR | 69606828 | 69607055 | 69606828 | ID=Msa0371460-mRNA-1:three_prime_utr;Parent=Msa0371460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
