Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511620 | XP_013461062.1 | 91.318 | 622 | 42 | 3 | 1 | 614 | 1 | 618 | 0.0 | 1170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511620 | sp|Q9SU72|EDS1C_ARATH | 39.124 | 639 | 313 | 15 | 13 | 609 | 9 | 613 | 4.20e-139 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511620 | A0A072V056 | 91.318 | 622 | 42 | 3 | 1 | 614 | 1 | 618 | 0.0 | 1170 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0091930 | Msa0511620 | 0.803261 | 3.792456e-49 | -8.615850e-47 |
| Msa0092410 | Msa0511620 | 0.828438 | 8.989890e-55 | -8.615850e-47 |
| Msa0106530 | Msa0511620 | 0.813315 | 2.724361e-51 | -8.615850e-47 |
| Msa0187830 | Msa0511620 | 0.804282 | 2.328419e-49 | -8.615850e-47 |
| Msa0189610 | Msa0511620 | 0.825027 | 5.861705e-54 | -8.615850e-47 |
| Msa0215590 | Msa0511620 | 0.857607 | 1.454571e-62 | -8.615850e-47 |
| Msa0227340 | Msa0511620 | 0.819181 | 1.329005e-52 | -8.615850e-47 |
| Msa0371460 | Msa0511620 | 0.935682 | 5.772251e-97 | -8.615850e-47 |
| Msa0408340 | Msa0511620 | 0.804182 | 2.442578e-49 | -8.615850e-47 |
| Msa0419670 | Msa0511620 | 0.895902 | 6.160635e-76 | -8.615850e-47 |
| Msa0443020 | Msa0511620 | 0.857067 | 2.101347e-62 | -8.615850e-47 |
| Msa0450180 | Msa0511620 | 0.913402 | 6.413485e-84 | -8.615850e-47 |
| Msa0461420 | Msa0511620 | 0.800274 | 1.556482e-48 | -8.615850e-47 |
| Msa0466010 | Msa0511620 | 0.824378 | 8.340205e-54 | -8.615850e-47 |
| Msa0255850 | Msa0511620 | 0.843414 | 1.421812e-58 | -8.615850e-47 |
| Msa0264830 | Msa0511620 | 0.827257 | 1.729113e-54 | -8.615850e-47 |
| Msa0269560 | Msa0511620 | 0.820663 | 6.088518e-53 | -8.615850e-47 |
| Msa0271550 | Msa0511620 | 0.836932 | 7.003113e-57 | -8.615850e-47 |
| Msa0277410 | Msa0511620 | 0.822759 | 1.994558e-53 | -8.615850e-47 |
| Msa0302870 | Msa0511620 | 0.825285 | 5.096112e-54 | -8.615850e-47 |
| Msa0319290 | Msa0511620 | 0.815322 | 9.810105e-52 | -8.615850e-47 |
| Msa0333650 | Msa0511620 | 0.858795 | 6.446812e-63 | -8.615850e-47 |
| Msa0340340 | Msa0511620 | 0.825075 | 5.711106e-54 | -8.615850e-47 |
| Msa0348550 | Msa0511620 | 0.817167 | 3.795610e-52 | -8.615850e-47 |
| Msa0506860 | Msa0511620 | 0.828708 | 7.737660e-55 | -8.615850e-47 |
| Msa0511620 | Msa0580920 | 0.807626 | 4.612033e-50 | -8.615850e-47 |
| Msa0511620 | Msa0708310 | 0.811451 | 6.956881e-51 | -8.615850e-47 |
| Msa0511620 | Msa0786980 | 0.843438 | 1.401047e-58 | -8.615850e-47 |
| Msa0511620 | Msa0822350 | 0.803992 | 2.675074e-49 | -8.615850e-47 |
| Msa0511620 | Msa0828240 | 0.826898 | 2.107206e-54 | -8.615850e-47 |
| Msa0511620 | Msa0834030 | 0.806117 | 9.610843e-50 | -8.615850e-47 |
| Msa0511620 | Msa0870060 | 0.804904 | 1.727016e-49 | -8.615850e-47 |
| Msa0511620 | Msa0935770 | 0.805620 | 1.222279e-49 | -8.615850e-47 |
| Msa0511620 | Msa0958080 | 0.846504 | 2.084193e-59 | -8.615850e-47 |
| Msa0511620 | Msa0972810 | 0.831279 | 1.826581e-55 | -8.615850e-47 |
| Msa0511620 | Msa0992640 | 0.863367 | 2.618446e-64 | -8.615850e-47 |
| Msa0511620 | Msa0992680 | 0.867215 | 1.613207e-65 | -8.615850e-47 |
| Msa0511620 | Msa1043120 | 0.813907 | 2.018553e-51 | -8.615850e-47 |
| Msa0511620 | Msa1063400 | 0.801327 | 9.486868e-49 | -8.615850e-47 |
| Msa0511620 | Msa1084640 | 0.843094 | 1.730444e-58 | -8.615850e-47 |
| Msa0511620 | Msa1353890 | 0.816074 | 6.668277e-52 | -8.615850e-47 |
| Msa0511620 | Msa1379580 | 0.802479 | 5.501044e-49 | -8.615850e-47 |
| Msa0511620 | Msa1400340 | 0.847014 | 1.511754e-59 | -8.615850e-47 |
| Msa0511620 | Msa1408180 | 0.813249 | 2.816379e-51 | -8.615850e-47 |
| Msa0511620 | Msa1416730 | 0.858461 | 8.109224e-63 | -8.615850e-47 |
| Msa0511620 | Msa1418280 | 0.857901 | 1.190465e-62 | -8.615850e-47 |
| Msa0511620 | Msa1424630 | 0.822176 | 2.724846e-53 | -8.615850e-47 |
| Msa0511620 | Msa1428070 | 0.841797 | 3.820751e-58 | -8.615850e-47 |
| Msa0511620 | Msa1430550 | 0.855589 | 5.699012e-62 | -8.615850e-47 |
| Msa0511620 | Msa1448980 | 0.812417 | 4.285102e-51 | -8.615850e-47 |
| Msa0511620 | Msa1458510 | 0.800044 | 1.733744e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511620 | MtrunA17_Chr3g0118251 | 91.318 | 622 | 42 | 3 | 1 | 614 | 1 | 618 | 0.0 | 1170 |
| Msa0511620 | MtrunA17_Chr3g0118541 | 50.647 | 618 | 276 | 12 | 13 | 614 | 22 | 626 | 0.0 | 583 |
| Msa0511620 | MtrunA17_Chr8g0384621 | 24.919 | 614 | 363 | 24 | 34 | 598 | 43 | 607 | 1.75e-46 | 173 |
| Msa0511620 | MtrunA17_Chr3g0107671 | 26.685 | 356 | 204 | 17 | 272 | 595 | 209 | 539 | 4.84e-20 | 94.4 |
| Msa0511620 | MtrunA17_Chr6g0451541 | 24.011 | 354 | 219 | 13 | 271 | 595 | 210 | 542 | 1.08e-17 | 86.7 |
| Msa0511620 | MtrunA17_Chr6g0451531 | 24.457 | 368 | 207 | 17 | 265 | 596 | 210 | 542 | 2.51e-14 | 76.3 |
| Msa0511620 | MtrunA17_Chr6g0451561 | 23.978 | 367 | 196 | 15 | 274 | 596 | 213 | 540 | 5.44e-14 | 75.1 |
| Msa0511620 | MtrunA17_Chr6g0451511 | 22.753 | 356 | 223 | 13 | 272 | 597 | 209 | 542 | 1.04e-12 | 70.9 |
| Msa0511620 | MtrunA17_Chr8g0338691 | 41.379 | 87 | 48 | 1 | 112 | 195 | 225 | 311 | 3.86e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511620 | AT3G48090.1 | 39.124 | 639 | 313 | 15 | 13 | 609 | 9 | 613 | 4.27e-140 | 421 |
| Msa0511620 | AT3G48080.1 | 37.727 | 607 | 316 | 15 | 35 | 603 | 29 | 611 | 9.25e-130 | 395 |
| Msa0511620 | AT3G48090.2 | 41.418 | 536 | 244 | 12 | 112 | 609 | 2 | 505 | 7.85e-128 | 386 |
| Msa0511620 | AT3G52430.1 | 25.071 | 351 | 206 | 13 | 264 | 580 | 175 | 502 | 2.78e-22 | 101 |
| Msa0511620 | AT3G52430.1 | 44.000 | 75 | 38 | 2 | 119 | 193 | 112 | 182 | 6.60e-11 | 65.5 |
| Msa0511620 | AT5G14930.2 | 28.319 | 226 | 127 | 9 | 398 | 597 | 293 | 509 | 3.32e-14 | 76.3 |
Find 133 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAATATCTTTGAATCTT+TGG | 0.137148 | 3_4:+61228216 | None:intergenic |
| CCAAAGATTCAAAGATATTT+TGG | 0.139370 | 3_4:-61228216 | Msa0511620:CDS |
| GTTACTCAGAATCATGTTTA+TGG | 0.160363 | 3_4:-61225595 | Msa0511620:CDS |
| TAATGCATGATTGTTCTTTA+TGG | 0.162207 | 3_4:+61225387 | None:intergenic |
| TGGTATTCCAAAACAAATTT+TGG | 0.174801 | 3_4:-61228323 | Msa0511620:CDS |
| GGGATACGATCGGAAGATTT+TGG | 0.194261 | 3_4:+61227436 | None:intergenic |
| CCTCCCATCTGCATTACTTT+TGG | 0.239470 | 3_4:-61227415 | Msa0511620:CDS |
| GGCTATTCTGGCAACACTTT+GGG | 0.244937 | 3_4:-61227479 | Msa0511620:CDS |
| GTCATTTAAGGCTATGTTAA+TGG | 0.251285 | 3_4:+61226781 | None:intergenic |
| GCTCATGAATGATTTGCTTT+TGG | 0.251739 | 3_4:+61227225 | None:intergenic |
| ATGCTACAAGGAGAGAAAAT+TGG | 0.262993 | 3_4:-61227360 | Msa0511620:CDS |
| CTTTGTTTGGTTATGTAATA+AGG | 0.263679 | 3_4:-61225244 | Msa0511620:three_prime_UTR |
| GGCTAGAACTTGCAGGAGTA+TGG | 0.273354 | 3_4:-61225856 | Msa0511620:CDS |
| TACCAGGCCAAGGTCATTTA+AGG | 0.278195 | 3_4:+61226769 | None:intergenic |
| TCGTTCCCTTCTAAGTCTTC+TGG | 0.280228 | 3_4:+61225797 | None:intergenic |
| TGGTGGTCCAGTGGCTATTC+TGG | 0.280884 | 3_4:-61227491 | Msa0511620:CDS |
| CCGTGATGGACGTGTTTATA+TGG | 0.287982 | 3_4:-61225693 | Msa0511620:CDS |
| GGCTGATAAGGATGTGTTTA+AGG | 0.289164 | 3_4:-61225465 | Msa0511620:CDS |
| AGTTTCACCAAAATTTGTTT+TGG | 0.292353 | 3_4:+61228316 | None:intergenic |
| ACATTTGCTTGGAAATCTTC+CGG | 0.306152 | 3_4:+61225884 | None:intergenic |
| TGGTTTCTTGTGAGCCTTCA+AGG | 0.321792 | 3_4:+61228421 | None:intergenic |
| TTGTCTGAGCATACTACTTC+AGG | 0.335540 | 3_4:-61226818 | Msa0511620:CDS |
| TTGAGTCCTTATAGAACCTT+TGG | 0.348190 | 3_4:-61227058 | Msa0511620:CDS |
| TCTTTGGTCTGTGGAAAGTA+TGG | 0.349731 | 3_4:+61228581 | None:intergenic |
| TGTCATATCTCATCACAAAA+TGG | 0.352184 | 3_4:+61227323 | None:intergenic |
| CATCAGGTGCTTTCAAAGAT+TGG | 0.360920 | 3_4:-61228343 | Msa0511620:CDS |
| GAACTTCCAGAAGACTTAGA+AGG | 0.361685 | 3_4:-61225803 | Msa0511620:CDS |
| ACTTAGAAGGGAACGAAGAT+TGG | 0.364202 | 3_4:-61225790 | Msa0511620:CDS |
| TTACTCAGAATCATGTTTAT+GGG | 0.367047 | 3_4:-61225594 | Msa0511620:CDS |
| ACATGCTGCTTGTAGGCTAA+TGG | 0.368160 | 3_4:-61227125 | Msa0511620:CDS |
| CATTTGCTTGGAAATCTTCC+GGG | 0.374664 | 3_4:+61225885 | None:intergenic |
| AGAGGAGCTAGGAGGATTCT+TGG | 0.379820 | 3_4:+61227295 | None:intergenic |
| TAGAAGACTAGTTGAGCCTT+TGG | 0.383000 | 3_4:-61225747 | Msa0511620:CDS |
| TCACAAGACATGCTGCTTGT+AGG | 0.383836 | 3_4:-61227132 | Msa0511620:CDS |
| GTTGGATCATGCACTTTGTT+TGG | 0.384787 | 3_4:-61225257 | Msa0511620:three_prime_UTR |
| TCAAGCAGCTGCAGCATTAG+AGG | 0.386121 | 3_4:-61226047 | Msa0511620:CDS |
| GTCATTTGATGCGTCCTTGA+AGG | 0.386377 | 3_4:-61228435 | Msa0511620:CDS |
| TAAGTTCCAAAGGTTCTATA+AGG | 0.394099 | 3_4:+61227052 | None:intergenic |
| CTAAAGGAGGAAGGCCAAAA+AGG | 0.396329 | 3_4:-61225670 | Msa0511620:CDS |
| CATGCTGCTTGTAGGCTAAT+GGG | 0.400385 | 3_4:-61227124 | Msa0511620:CDS |
| TCTAGAAGGTAGTGTCTCTC+TGG | 0.408942 | 3_4:+61228401 | None:intergenic |
| ATCATCAGCTTTCCAGCATC+AGG | 0.410129 | 3_4:-61228359 | Msa0511620:CDS |
| TGGCTATTCTGGCAACACTT+TGG | 0.417209 | 3_4:-61227480 | Msa0511620:CDS |
| TGCTACAAGGAGAGAAAATT+GGG | 0.419960 | 3_4:-61227359 | Msa0511620:CDS |
| TCACATTTATTACACAATAT+AGG | 0.422806 | 3_4:+61225209 | None:intergenic |
| ACATCATCAAAAGGCTTGTC+AGG | 0.423403 | 3_4:+61225545 | None:intergenic |
| AACGAAGATTGGATTAAGAT+AGG | 0.426436 | 3_4:-61225779 | Msa0511620:CDS |
| GTACAGAGGCTAGAACTTGC+AGG | 0.431181 | 3_4:-61225863 | Msa0511620:CDS |
| CTAGCCTCTGTACATTTGCT+TGG | 0.431295 | 3_4:+61225873 | None:intergenic |
| TGTTGTGTACTTAGACCAAC+TGG | 0.432263 | 3_4:-61226852 | Msa0511620:CDS |
| TGAGAAAGATGAGGCTGATA+AGG | 0.438651 | 3_4:-61225477 | Msa0511620:CDS |
| CTAATTACTATAGACATTCA+AGG | 0.443986 | 3_4:-61225718 | Msa0511620:CDS |
| ATTATACTAATATAGTACTT+TGG | 0.447774 | 3_4:-61225305 | Msa0511620:three_prime_UTR |
| TAAGGAAAAGGTTGAGGCAT+TGG | 0.451260 | 3_4:-61225522 | Msa0511620:CDS |
| AAGAAGCAGATAGTGTTTGC+AGG | 0.453653 | 3_4:-61227523 | Msa0511620:CDS |
| ATGACCTGCAGAATTGCATC+AGG | 0.455008 | 3_4:+61226977 | None:intergenic |
| TTTCGTTCACTTAAAAGCAT+TGG | 0.464216 | 3_4:-61228275 | Msa0511620:CDS |
| GATTGTTCTTTATGGTCTGT+TGG | 0.470082 | 3_4:+61225395 | None:intergenic |
| TCTTTGAAAGCACCTGATGC+TGG | 0.472238 | 3_4:+61228347 | None:intergenic |
| CAATGAATATGTAGGTGGAT+AGG | 0.474650 | 3_4:-61227558 | Msa0511620:intron |
| GGAAAAGGTTGAGGCATTGG+AGG | 0.475367 | 3_4:-61225519 | Msa0511620:CDS |
| AATGAATATGTAGGTGGATA+GGG | 0.479173 | 3_4:-61227557 | Msa0511620:intron |
| CATTATGAGAAGAGGGATGA+AGG | 0.484238 | 3_4:-61225620 | Msa0511620:CDS |
| AGGTTATTACGATGCATTCA+AGG | 0.484769 | 3_4:-61225918 | Msa0511620:CDS |
| AATATGTGATTTCCAACTAA+AGG | 0.485127 | 3_4:+61227388 | None:intergenic |
| TGGATTCTACGTTTGTTAAG+TGG | 0.487040 | 3_4:-61225430 | Msa0511620:CDS |
| AACATAGCCTTAAATGACCT+TGG | 0.489141 | 3_4:-61226776 | Msa0511620:CDS |
| TGCACTACAAGTGGCGATGA+AGG | 0.491111 | 3_4:-61227022 | Msa0511620:CDS |
| GTGTTTGCAGGACACTCGTC+TGG | 0.495509 | 3_4:-61227511 | Msa0511620:CDS |
| CACAGGTGCTGCTTATCCAC+TGG | 0.507899 | 3_4:-61225344 | Msa0511620:three_prime_UTR |
| GTTGGAACATTATGAGAAGA+GGG | 0.510509 | 3_4:-61225627 | Msa0511620:CDS |
| TTCATGAGCGAATCGAGTCT+TGG | 0.516950 | 3_4:-61227211 | Msa0511620:CDS |
| GAAGTAGTATGCTCAGACAA+AGG | 0.517071 | 3_4:+61226821 | None:intergenic |
| CCAGTTCAAAATGTTGTCGC+AGG | 0.517117 | 3_4:+61226897 | None:intergenic |
| AATTGGCCAACTGGCCAACC+AGG | 0.519323 | 3_4:-61228696 | None:intergenic |
| AGTGTGAGCTATAGTGCAGT+TGG | 0.524340 | 3_4:-61225275 | Msa0511620:three_prime_UTR |
| AGATAGCCGCTGTGGAGGAT+AGG | 0.526622 | 3_4:-61225988 | Msa0511620:CDS |
| TGGTAACAATGAAGCTGCTA+AGG | 0.528491 | 3_4:-61228255 | Msa0511620:CDS |
| TGATGTTAAGGAAAAGGTTG+AGG | 0.529296 | 3_4:-61225528 | Msa0511620:CDS |
| GCTAGAACTTGCAGGAGTAT+GGG | 0.533503 | 3_4:-61225855 | Msa0511620:CDS |
| AAACCCTGATGCAATTCTGC+AGG | 0.542505 | 3_4:-61226981 | Msa0511620:CDS |
| ATTCTACGTTTGTTAAGTGG+TGG | 0.545586 | 3_4:-61225427 | Msa0511620:CDS |
| GGACGTGTTTATATGGCTAA+AGG | 0.547868 | 3_4:-61225686 | Msa0511620:CDS |
| AGCCTTAAATGACCTTGGCC+TGG | 0.548198 | 3_4:-61226771 | Msa0511620:intron |
| TAGGTATACACAAAGATGGT+TGG | 0.548252 | 3_4:-61225645 | Msa0511620:CDS |
| GGAGGATAGGATGAAAGCAC+TGG | 0.548822 | 3_4:-61225975 | Msa0511620:CDS |
| GCAGAAAATGTAAGTTCCAA+AGG | 0.549590 | 3_4:+61227042 | None:intergenic |
| TCATCACAAAATGGAAGAAG+TGG | 0.551943 | 3_4:+61227332 | None:intergenic |
| CGAAAGAAGATAGAGGAGCT+AGG | 0.552232 | 3_4:+61227284 | None:intergenic |
| ATCATGTTTATGGGCTGAAG+TGG | 0.554848 | 3_4:-61225585 | Msa0511620:CDS |
| AACTTCCAGAAGACTTAGAA+GGG | 0.561390 | 3_4:-61225802 | Msa0511620:CDS |
| GGTATAGGTATACACAAAGA+TGG | 0.561423 | 3_4:-61225649 | Msa0511620:CDS |
| AAGCTCTGAAGAAGAAGCTG+AGG | 0.562108 | 3_4:-61226936 | Msa0511620:CDS |
| GGTTGGAACATTATGAGAAG+AGG | 0.569597 | 3_4:-61225628 | Msa0511620:CDS |
| ATGTTTATGGGCTGAAGTGG+AGG | 0.574694 | 3_4:-61225582 | Msa0511620:CDS |
| CAAAAGTAATGCAGATGGGA+GGG | 0.576141 | 3_4:+61227416 | None:intergenic |
| AAGCTGATGATAACTTCTGA+AGG | 0.579352 | 3_4:+61228371 | None:intergenic |
| AAAAGCATATGTCTTCAACT+TGG | 0.579608 | 3_4:-61228622 | Msa0511620:five_prime_UTR |
| ACACACATGGCTTCATCAAG+AGG | 0.586314 | 3_4:-61228500 | Msa0511620:exon |
| AGAACCAAAAGTAATGCAGA+TGG | 0.587556 | 3_4:+61227411 | None:intergenic |
| TGGAGGAATTTATAAGCAAG+TGG | 0.588253 | 3_4:-61225502 | Msa0511620:CDS |
| AAGGTTCTATAAGGACTCAA+AGG | 0.589494 | 3_4:+61227061 | None:intergenic |
| TTATAACTGCATTAATCCAG+TGG | 0.589743 | 3_4:+61225328 | None:intergenic |
| AAAGTCATCACTTGAAGATG+AGG | 0.590426 | 3_4:-61228192 | Msa0511620:intron |
| ACAAAAGATAGCCGCTGTGG+AGG | 0.604033 | 3_4:-61225993 | Msa0511620:CDS |
| CAGCTGCAGCATTAGAGGAA+CGG | 0.605468 | 3_4:-61226042 | Msa0511620:CDS |
| AAAGGTTGCATACCAGGCCA+AGG | 0.614366 | 3_4:+61226759 | None:intergenic |
| AGTGTTGCCAGAATAGCCAC+TGG | 0.614618 | 3_4:+61227484 | None:intergenic |
| GGACAGTTACAGAGAAACGC+GGG | 0.617330 | 3_4:-61225954 | Msa0511620:CDS |
| CGTGTTTATATGGCTAAAGG+AGG | 0.625592 | 3_4:-61225683 | Msa0511620:CDS |
| TTTATATGGCTAAAGGAGGA+AGG | 0.625809 | 3_4:-61225679 | Msa0511620:CDS |
| CCAAAAGTAATGCAGATGGG+AGG | 0.626384 | 3_4:+61227415 | None:intergenic |
| CCATATAAACACGTCCATCA+CGG | 0.630887 | 3_4:+61225693 | None:intergenic |
| GTCTTGTTGAAGTGTGACAC+AGG | 0.632853 | 3_4:-61225361 | Msa0511620:exon |
| TATGAGAAGAGGGATGAAGG+TGG | 0.634440 | 3_4:-61225617 | Msa0511620:CDS |
| TTTGCAGGACACTCGTCTGG+TGG | 0.640829 | 3_4:-61227508 | Msa0511620:CDS |
| ACACTCGTCTGGTGGTCCAG+TGG | 0.641162 | 3_4:-61227500 | Msa0511620:CDS |
| AGACATTCAAGGAACCGTGA+TGG | 0.644212 | 3_4:-61225707 | Msa0511620:CDS |
| GAACCAAAAGTAATGCAGAT+GGG | 0.645149 | 3_4:+61227412 | None:intergenic |
| TCTGAGCATACTACTTCAGG+TGG | 0.659119 | 3_4:-61226815 | Msa0511620:CDS |
| TGAGCTATATCTTGTTTGTG+AGG | 0.662845 | 3_4:-61225189 | Msa0511620:three_prime_UTR |
| GCAGATGGGAGGGATACGAT+CGG | 0.665165 | 3_4:+61227426 | None:intergenic |
| TAGTAATTAGCAATATCCAA+AGG | 0.665329 | 3_4:+61225731 | None:intergenic |
| TGACCTGCAGAATTGCATCA+GGG | 0.674595 | 3_4:+61226978 | None:intergenic |
| GCTACAAAAGATAGCCGCTG+TGG | 0.677260 | 3_4:-61225996 | Msa0511620:CDS |
| CACATGGCTTCATCAAGAGG+TGG | 0.677661 | 3_4:-61228497 | Msa0511620:CDS |
| ATTCAAGGATCAATTAGACC+CGG | 0.679489 | 3_4:-61225903 | Msa0511620:CDS |
| ATTTCCAAGCAAATGTACAG+AGG | 0.698435 | 3_4:-61225877 | Msa0511620:CDS |
| AAGAAGATAGAGGAGCTAGG+AGG | 0.700489 | 3_4:+61227287 | None:intergenic |
| TGGACAGTTACAGAGAAACG+CGG | 0.726781 | 3_4:-61225955 | Msa0511620:CDS |
| CAAGTGGCATGAGAAAGATG+AGG | 0.734716 | 3_4:-61225486 | Msa0511620:CDS |
| GACAGTTACAGAGAAACGCG+GGG | 0.746046 | 3_4:-61225953 | Msa0511620:CDS |
| TTTCATCCTATCCTCCACAG+CGG | 0.790893 | 3_4:+61225982 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTTATCATATTGTTT+AGG | + | chr3_4:61225186-61225205 | None:intergenic | 15.0% |
| !!! | ACAAAATTAATTTTCAACTT+AGG | + | chr3_4:61225879-61225898 | None:intergenic | 15.0% |
| !! | AAAAACATATTTAATAACTC+AGG | - | chr3_4:61226113-61226132 | Msa0511620:intron | 15.0% |
| !! | ATATATTTCAATGAATATGT+AGG | - | chr3_4:61226257-61226276 | Msa0511620:intron | 15.0% |
| !! | ATATGAGTATATAAAGTAAA+AGG | + | chr3_4:61227165-61227184 | None:intergenic | 15.0% |
| !! | ATTATACTAATATAGTACTT+TGG | - | chr3_4:61228518-61228537 | Msa0511620:five_prime_UTR | 15.0% |
| !! | TTAAGTATAGATGCTATAAA+AGG | + | chr3_4:61225735-61225754 | None:intergenic | 20.0% |
| !!! | AAACTAATATTGAGTTGTTT+TGG | + | chr3_4:61225786-61225805 | None:intergenic | 20.0% |
| !!! | AATGTCATGTATAATTTGTT+GGG | - | chr3_4:61226036-61226055 | Msa0511620:CDS | 20.0% |
| !! | GTAGTAATTTATTAGACATA+AGG | + | chr3_4:61227305-61227324 | None:intergenic | 20.0% |
| !! | GTAGTAATTTATTAGACATA+AGG | + | chr3_4:61227305-61227324 | None:intergenic | 20.0% |
| !! | CATAATCAGATATAATTGAA+TGG | - | chr3_4:61227492-61227511 | Msa0511620:CDS | 20.0% |
| !! | TCACATTTATTACACAATAT+AGG | + | chr3_4:61228617-61228636 | None:intergenic | 20.0% |
| !!! | TTAACTCCTTGTTTTTTCTT+TGG | + | chr3_4:61225261-61225280 | None:intergenic | 25.0% |
| !! | TGGTATTCCAAAACAAATTT+TGG | - | chr3_4:61225500-61225519 | Msa0511620:CDS | 25.0% |
| !!! | AGTTTCACCAAAATTTGTTT+TGG | + | chr3_4:61225510-61225529 | None:intergenic | 25.0% |
| ! | CCAAAATATCTTTGAATCTT+TGG | + | chr3_4:61225610-61225629 | None:intergenic | 25.0% |
| !! | CCAAAGATTCAAAGATATTT+TGG | - | chr3_4:61225607-61225626 | Msa0511620:CDS | 25.0% |
| !!! | CATTTTTAGCATTAAGGATA+GGG | + | chr3_4:61225761-61225780 | None:intergenic | 25.0% |
| !!! | TCATTTTTAGCATTAAGGAT+AGG | + | chr3_4:61225762-61225781 | None:intergenic | 25.0% |
| !!! | TTGGTTCATTTTTAGCATTA+AGG | + | chr3_4:61225767-61225786 | None:intergenic | 25.0% |
| ! | TTAACATTAGAGACTCAATT+AGG | - | chr3_4:61225805-61225824 | Msa0511620:CDS | 25.0% |
| !! | CAATGTCATGTATAATTTGT+TGG | - | chr3_4:61226035-61226054 | Msa0511620:CDS | 25.0% |
| !!! | ATCACATGGATTTGTTAAAA+AGG | - | chr3_4:61226201-61226220 | Msa0511620:intron | 25.0% |
| ! | TATTTCAATGAATATGTAGG+TGG | - | chr3_4:61226260-61226279 | Msa0511620:intron | 25.0% |
| ! | AATATGTGATTTCCAACTAA+AGG | + | chr3_4:61226438-61226457 | None:intergenic | 25.0% |
| ! | TTTGAACTGGTAAAAAACTT+TGG | - | chr3_4:61226939-61226958 | Msa0511620:CDS | 25.0% |
| !!! | CTTTAAAATCGCCAAAAATA+GGG | + | chr3_4:61227096-61227115 | None:intergenic | 25.0% |
| !!! | ACTTTAAAATCGCCAAAAAT+AGG | + | chr3_4:61227097-61227116 | None:intergenic | 25.0% |
| ! | AATCAGATATGTCACTAATA+TGG | + | chr3_4:61227209-61227228 | None:intergenic | 25.0% |
| ! | AATCAGATATGTCACTAATA+TGG | + | chr3_4:61227209-61227228 | None:intergenic | 25.0% |
| ! | TCTCATGTATTATGTATGAT+AGG | + | chr3_4:61227571-61227590 | None:intergenic | 25.0% |
| !!! | TGCTATTTTTTCATGTTCAA+TGG | + | chr3_4:61227683-61227702 | None:intergenic | 25.0% |
| ! | TAGTAATTAGCAATATCCAA+AGG | + | chr3_4:61228095-61228114 | None:intergenic | 25.0% |
| ! | CTAATTACTATAGACATTCA+AGG | - | chr3_4:61228105-61228124 | Msa0511620:intron | 25.0% |
| ! | TTACTCAGAATCATGTTTAT+GGG | - | chr3_4:61228229-61228248 | Msa0511620:CDS | 25.0% |
| !! | TTTTCCTTAACATCATCAAA+AGG | + | chr3_4:61228290-61228309 | None:intergenic | 25.0% |
| !!! | TTTTGATGATGTTAAGGAAA+AGG | - | chr3_4:61228289-61228308 | Msa0511620:CDS | 25.0% |
| ! | TAATGCATGATTGTTCTTTA+TGG | + | chr3_4:61228439-61228458 | None:intergenic | 25.0% |
| !! | CTTTGTTTGGTTATGTAATA+AGG | - | chr3_4:61228579-61228598 | Msa0511620:five_prime_UTR | 25.0% |
| !!! | TACAGTCTCAGTTTTTTAAT+AGG | - | chr3_4:61228683-61228702 | Msa0511620:five_prime_UTR | 25.0% |
| TTGACTTAAAAACTTGAACC+TGG | + | chr3_4:61225148-61225167 | None:intergenic | 30.0% | |
| ! | AAAAGCATATGTCTTCAACT+TGG | - | chr3_4:61225201-61225220 | Msa0511620:three_prime_UTR | 30.0% |
| ! | TTTCGTTCACTTAAAAGCAT+TGG | - | chr3_4:61225548-61225567 | Msa0511620:CDS | 30.0% |
| TTTGCATAACTAGATACACA+TGG | + | chr3_4:61225691-61225710 | None:intergenic | 30.0% | |
| ATTTGATTCATGTACCAAGT+TGG | + | chr3_4:61225843-61225862 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTAGTCCCTCTTTA+AGG | - | chr3_4:61225999-61226018 | Msa0511620:CDS | 30.0% |
| ! | ATACTTTTGGTCCTTAAAGA+GGG | + | chr3_4:61226013-61226032 | None:intergenic | 30.0% |
| ! | ACATGACATTGACATACTTT+TGG | + | chr3_4:61226026-61226045 | None:intergenic | 30.0% |
| TGACACTATCAAATATCACA+TGG | - | chr3_4:61226187-61226206 | Msa0511620:intron | 30.0% | |
| AATGAATATGTAGGTGGATA+GGG | - | chr3_4:61226266-61226285 | Msa0511620:intron | 30.0% | |
| ! | ACATATTTTCTCATGCTACA+AGG | - | chr3_4:61226451-61226470 | Msa0511620:intron | 30.0% |
| TGTCATATCTCATCACAAAA+TGG | + | chr3_4:61226503-61226522 | None:intergenic | 30.0% | |
| ! | GTGCAACTGTTTCAAATTTT+TGG | + | chr3_4:61226566-61226585 | None:intergenic | 30.0% |
| !!! | CTCATGAATGATTTGCTTTT+GGG | + | chr3_4:61226600-61226619 | None:intergenic | 30.0% |
| TAAGTTCCAAAGGTTCTATA+AGG | + | chr3_4:61226774-61226793 | None:intergenic | 30.0% | |
| ! | GTCATTTAAGGCTATGTTAA+TGG | + | chr3_4:61227045-61227064 | None:intergenic | 30.0% |
| AACGAAGATTGGATTAAGAT+AGG | - | chr3_4:61228044-61228063 | Msa0511620:intron | 30.0% | |
| ! | TGTGTATACCTATACCTTTT+TGG | + | chr3_4:61228170-61228189 | None:intergenic | 30.0% |
| GTTACTCAGAATCATGTTTA+TGG | - | chr3_4:61228228-61228247 | Msa0511620:CDS | 30.0% | |
| !!! | GTTTAAGGATGTGTTTTTAG+TGG | - | chr3_4:61228373-61228392 | Msa0511620:CDS | 30.0% |
| TTATAACTGCATTAATCCAG+TGG | + | chr3_4:61228498-61228517 | None:intergenic | 30.0% | |
| CTTAAAAACTTGAACCTGGT+TGG | + | chr3_4:61225144-61225163 | None:intergenic | 35.0% | |
| !!! | CTTGTTTTTTCTTTGGTCTG+TGG | + | chr3_4:61225254-61225273 | None:intergenic | 35.0% |
| CACAGACCAAAGAAAAAACA+AGG | - | chr3_4:61225252-61225271 | Msa0511620:three_prime_UTR | 35.0% | |
| ! | CTGAAGGATTCTTTTCTAGA+AGG | + | chr3_4:61225439-61225458 | None:intergenic | 35.0% |
| AAGCTGATGATAACTTCTGA+AGG | + | chr3_4:61225455-61225474 | None:intergenic | 35.0% | |
| AAAGTCATCACTTGAAGATG+AGG | - | chr3_4:61225631-61225650 | Msa0511620:CDS | 35.0% | |
| AGATACACATGGTAAGATAG+AGG | + | chr3_4:61225680-61225699 | None:intergenic | 35.0% | |
| GGCAATTTATTTGTCCAACT+TGG | - | chr3_4:61225826-61225845 | Msa0511620:CDS | 35.0% | |
| ACTTGCAGGAACTAAAAAGT+AGG | + | chr3_4:61225968-61225987 | None:intergenic | 35.0% | |
| ! | CATACTTTTGGTCCTTAAAG+AGG | + | chr3_4:61226014-61226033 | None:intergenic | 35.0% |
| !! | AATTTGTTGGGAGTGAAAAG+TGG | - | chr3_4:61226048-61226067 | Msa0511620:CDS | 35.0% |
| ! | ATTTGTTGGGAGTGAAAAGT+GGG | - | chr3_4:61226049-61226068 | Msa0511620:CDS | 35.0% |
| CAATGAATATGTAGGTGGAT+AGG | - | chr3_4:61226265-61226284 | Msa0511620:intron | 35.0% | |
| ! | TGGAGTTGGAAAGTTTTCTA+AGG | + | chr3_4:61226370-61226389 | None:intergenic | 35.0% |
| GAACCAAAAGTAATGCAGAT+GGG | + | chr3_4:61226414-61226433 | None:intergenic | 35.0% | |
| AGAACCAAAAGTAATGCAGA+TGG | + | chr3_4:61226415-61226434 | None:intergenic | 35.0% | |
| !!! | ACTTTTGGTTCTCCTTTAGT+TGG | - | chr3_4:61226423-61226442 | Msa0511620:intron | 35.0% |
| ATGCTACAAGGAGAGAAAAT+TGG | - | chr3_4:61226463-61226482 | Msa0511620:intron | 35.0% | |
| TGCTACAAGGAGAGAAAATT+GGG | - | chr3_4:61226464-61226483 | Msa0511620:intron | 35.0% | |
| TCATCACAAAATGGAAGAAG+TGG | + | chr3_4:61226494-61226513 | None:intergenic | 35.0% | |
| ! | TTTTGGTCGAAAGAAGATAG+AGG | + | chr3_4:61226549-61226568 | None:intergenic | 35.0% |
| !!! | GCTCATGAATGATTTGCTTT+TGG | + | chr3_4:61226601-61226620 | None:intergenic | 35.0% |
| AAGGTTCTATAAGGACTCAA+AGG | + | chr3_4:61226765-61226784 | None:intergenic | 35.0% | |
| TTGAGTCCTTATAGAACCTT+TGG | - | chr3_4:61226765-61226784 | Msa0511620:intron | 35.0% | |
| GCAGAAAATGTAAGTTCCAA+AGG | + | chr3_4:61226784-61226803 | None:intergenic | 35.0% | |
| ! | TACATTTTCTGCACTACAAG+TGG | - | chr3_4:61226792-61226811 | Msa0511620:CDS | 35.0% |
| ! | ACAAAGGAAGATTTTCCAGT+TGG | + | chr3_4:61226989-61227008 | None:intergenic | 35.0% |
| ! | AACATAGCCTTAAATGACCT+TGG | - | chr3_4:61227047-61227066 | Msa0511620:CDS | 35.0% |
| CCAAAAATAGGGAAGGATAA+AGG | + | chr3_4:61227085-61227104 | None:intergenic | 35.0% | |
| ! | CCTTTATCCTTCCCTATTTT+TGG | - | chr3_4:61227082-61227101 | Msa0511620:CDS | 35.0% |
| AAAATCGCCAAAAATAGGGA+AGG | + | chr3_4:61227092-61227111 | None:intergenic | 35.0% | |
| GTGTAATGCATATAACAGCA+TGG | + | chr3_4:61227623-61227642 | None:intergenic | 35.0% | |
| GTTATATGCATTACACACCT+TGG | - | chr3_4:61227627-61227646 | Msa0511620:intron | 35.0% | |
| ACATAGTTTCATTTCCACCA+AGG | + | chr3_4:61227647-61227666 | None:intergenic | 35.0% | |
| AGGTTATTACGATGCATTCA+AGG | - | chr3_4:61227905-61227924 | Msa0511620:intron | 35.0% | |
| ATTCAAGGATCAATTAGACC+CGG | - | chr3_4:61227920-61227939 | Msa0511620:intron | 35.0% | |
| ACATTTGCTTGGAAATCTTC+CGG | + | chr3_4:61227942-61227961 | None:intergenic | 35.0% | |
| ATTTCCAAGCAAATGTACAG+AGG | - | chr3_4:61227946-61227965 | Msa0511620:intron | 35.0% | |
| AACTTCCAGAAGACTTAGAA+GGG | - | chr3_4:61228021-61228040 | Msa0511620:intron | 35.0% | |
| TTTATATGGCTAAAGGAGGA+AGG | - | chr3_4:61228144-61228163 | Msa0511620:intron | 35.0% | |
| GGTATAGGTATACACAAAGA+TGG | - | chr3_4:61228174-61228193 | Msa0511620:intron | 35.0% | |
| TAGGTATACACAAAGATGGT+TGG | - | chr3_4:61228178-61228197 | Msa0511620:intron | 35.0% | |
| GTTGGAACATTATGAGAAGA+GGG | - | chr3_4:61228196-61228215 | Msa0511620:CDS | 35.0% | |
| !!! | CAAGCCTTTTGATGATGTTA+AGG | - | chr3_4:61228283-61228302 | Msa0511620:CDS | 35.0% |
| TGATGTTAAGGAAAAGGTTG+AGG | - | chr3_4:61228295-61228314 | Msa0511620:CDS | 35.0% | |
| TGGAGGAATTTATAAGCAAG+TGG | - | chr3_4:61228321-61228340 | Msa0511620:CDS | 35.0% | |
| ! | TGGATTCTACGTTTGTTAAG+TGG | - | chr3_4:61228393-61228412 | Msa0511620:CDS | 35.0% |
| ! | ATTCTACGTTTGTTAAGTGG+TGG | - | chr3_4:61228396-61228415 | Msa0511620:CDS | 35.0% |
| GATTGTTCTTTATGGTCTGT+TGG | + | chr3_4:61228431-61228450 | None:intergenic | 35.0% | |
| ! | TGAGCTATATCTTGTTTGTG+AGG | - | chr3_4:61228634-61228653 | Msa0511620:five_prime_UTR | 35.0% |
| TCTTTGGTCTGTGGAAAGTA+TGG | + | chr3_4:61225245-61225264 | None:intergenic | 40.0% | |
| CATCAGGTGCTTTCAAAGAT+TGG | - | chr3_4:61225480-61225499 | Msa0511620:CDS | 40.0% | |
| TGGTAACAATGAAGCTGCTA+AGG | - | chr3_4:61225568-61225587 | Msa0511620:CDS | 40.0% | |
| ! | CATGCAACTTTGTAACTTGC+AGG | + | chr3_4:61225982-61226001 | None:intergenic | 40.0% |
| AAGAAGCAGATAGTGTTTGC+AGG | - | chr3_4:61226300-61226319 | Msa0511620:intron | 40.0% | |
| CAAAAGTAATGCAGATGGGA+GGG | + | chr3_4:61226410-61226429 | None:intergenic | 40.0% | |
| ! | ATGTTGTCGCAGGCTTTTAA+GGG | + | chr3_4:61226919-61226938 | None:intergenic | 40.0% |
| ! | AATGTTGTCGCAGGCTTTTA+AGG | + | chr3_4:61226920-61226939 | None:intergenic | 40.0% |
| TGTTGTGTACTTAGACCAAC+TGG | - | chr3_4:61226971-61226990 | Msa0511620:CDS | 40.0% | |
| GAAGTAGTATGCTCAGACAA+AGG | + | chr3_4:61227005-61227024 | None:intergenic | 40.0% | |
| TTGTCTGAGCATACTACTTC+AGG | - | chr3_4:61227005-61227024 | Msa0511620:CDS | 40.0% | |
| AAGGATAAAGGTTGCATACC+AGG | + | chr3_4:61227073-61227092 | None:intergenic | 40.0% | |
| ATATGCATTACACACCTTGG+TGG | - | chr3_4:61227630-61227649 | Msa0511620:intron | 40.0% | |
| CATTTGCTTGGAAATCTTCC+GGG | + | chr3_4:61227941-61227960 | None:intergenic | 40.0% | |
| GAACTTCCAGAAGACTTAGA+AGG | - | chr3_4:61228020-61228039 | Msa0511620:intron | 40.0% | |
| ACTTAGAAGGGAACGAAGAT+TGG | - | chr3_4:61228033-61228052 | Msa0511620:intron | 40.0% | |
| ! | TAGAAGACTAGTTGAGCCTT+TGG | - | chr3_4:61228076-61228095 | Msa0511620:intron | 40.0% |
| CCATATAAACACGTCCATCA+CGG | + | chr3_4:61228133-61228152 | None:intergenic | 40.0% | |
| GGACGTGTTTATATGGCTAA+AGG | - | chr3_4:61228137-61228156 | Msa0511620:intron | 40.0% | |
| CGTGTTTATATGGCTAAAGG+AGG | - | chr3_4:61228140-61228159 | Msa0511620:intron | 40.0% | |
| GGTTGGAACATTATGAGAAG+AGG | - | chr3_4:61228195-61228214 | Msa0511620:CDS | 40.0% | |
| CATTATGAGAAGAGGGATGA+AGG | - | chr3_4:61228203-61228222 | Msa0511620:CDS | 40.0% | |
| ! | ATCATGTTTATGGGCTGAAG+TGG | - | chr3_4:61228238-61228257 | Msa0511620:CDS | 40.0% |
| ACATCATCAAAAGGCTTGTC+AGG | + | chr3_4:61228281-61228300 | None:intergenic | 40.0% | |
| TAAGGAAAAGGTTGAGGCAT+TGG | - | chr3_4:61228301-61228320 | Msa0511620:CDS | 40.0% | |
| TGAGAAAGATGAGGCTGATA+AGG | - | chr3_4:61228346-61228365 | Msa0511620:CDS | 40.0% | |
| GGCTGATAAGGATGTGTTTA+AGG | - | chr3_4:61228358-61228377 | Msa0511620:CDS | 40.0% | |
| GTTGGATCATGCACTTTGTT+TGG | - | chr3_4:61228566-61228585 | Msa0511620:five_prime_UTR | 40.0% | |
| ACACACATGGCTTCATCAAG+AGG | - | chr3_4:61225323-61225342 | Msa0511620:three_prime_UTR | 45.0% | |
| GTCATTTGATGCGTCCTTGA+AGG | - | chr3_4:61225388-61225407 | Msa0511620:CDS | 45.0% | |
| TGGTTTCTTGTGAGCCTTCA+AGG | + | chr3_4:61225405-61225424 | None:intergenic | 45.0% | |
| TCTAGAAGGTAGTGTCTCTC+TGG | + | chr3_4:61225425-61225444 | None:intergenic | 45.0% | |
| ATCATCAGCTTTCCAGCATC+AGG | - | chr3_4:61225464-61225483 | Msa0511620:CDS | 45.0% | |
| !! | TCTTTGAAAGCACCTGATGC+TGG | + | chr3_4:61225479-61225498 | None:intergenic | 45.0% |
| TGGGAGTGAAAAGTGGGTAT+AGG | - | chr3_4:61226055-61226074 | Msa0511620:CDS | 45.0% | |
| GGGAGTGAAAAGTGGGTATA+GGG | - | chr3_4:61226056-61226075 | Msa0511620:CDS | 45.0% | |
| TGGCTATTCTGGCAACACTT+TGG | - | chr3_4:61226343-61226362 | Msa0511620:intron | 45.0% | |
| GGCTATTCTGGCAACACTTT+GGG | - | chr3_4:61226344-61226363 | Msa0511620:intron | 45.0% | |
| !!! | CGATCGGAAGATTTTGGAGT+TGG | + | chr3_4:61226384-61226403 | None:intergenic | 45.0% |
| ! | GGGATACGATCGGAAGATTT+TGG | + | chr3_4:61226390-61226409 | None:intergenic | 45.0% |
| CCAAAAGTAATGCAGATGGG+AGG | + | chr3_4:61226411-61226430 | None:intergenic | 45.0% | |
| ! | CCTCCCATCTGCATTACTTT+TGG | - | chr3_4:61226408-61226427 | Msa0511620:intron | 45.0% |
| AAGAAGATAGAGGAGCTAGG+AGG | + | chr3_4:61226539-61226558 | None:intergenic | 45.0% | |
| CGAAAGAAGATAGAGGAGCT+AGG | + | chr3_4:61226542-61226561 | None:intergenic | 45.0% | |
| TTCATGAGCGAATCGAGTCT+TGG | - | chr3_4:61226612-61226631 | Msa0511620:intron | 45.0% | |
| ! | TCACAAGACATGCTGCTTGT+AGG | - | chr3_4:61226691-61226710 | Msa0511620:intron | 45.0% |
| ! | ACATGCTGCTTGTAGGCTAA+TGG | - | chr3_4:61226698-61226717 | Msa0511620:intron | 45.0% |
| ! | CATGCTGCTTGTAGGCTAAT+GGG | - | chr3_4:61226699-61226718 | Msa0511620:intron | 45.0% |
| AAACCCTGATGCAATTCTGC+AGG | - | chr3_4:61226842-61226861 | Msa0511620:CDS | 45.0% | |
| TGACCTGCAGAATTGCATCA+GGG | + | chr3_4:61226848-61226867 | None:intergenic | 45.0% | |
| ATGACCTGCAGAATTGCATC+AGG | + | chr3_4:61226849-61226868 | None:intergenic | 45.0% | |
| !! | AAGCTCTGAAGAAGAAGCTG+AGG | - | chr3_4:61226887-61226906 | Msa0511620:CDS | 45.0% |
| ! | TGTTGTCGCAGGCTTTTAAG+GGG | + | chr3_4:61226918-61226937 | None:intergenic | 45.0% |
| CCAGTTCAAAATGTTGTCGC+AGG | + | chr3_4:61226929-61226948 | None:intergenic | 45.0% | |
| ! | CCTGCGACAACATTTTGAAC+TGG | - | chr3_4:61226926-61226945 | Msa0511620:CDS | 45.0% |
| TCTGAGCATACTACTTCAGG+TGG | - | chr3_4:61227008-61227027 | Msa0511620:CDS | 45.0% | |
| TACCAGGCCAAGGTCATTTA+AGG | + | chr3_4:61227057-61227076 | None:intergenic | 45.0% | |
| TTTCATCCTATCCTCCACAG+CGG | + | chr3_4:61227844-61227863 | None:intergenic | 45.0% | |
| TGGACAGTTACAGAGAAACG+CGG | - | chr3_4:61227868-61227887 | Msa0511620:intron | 45.0% | |
| CTAGCCTCTGTACATTTGCT+TGG | + | chr3_4:61227953-61227972 | None:intergenic | 45.0% | |
| ! | GCTAGAACTTGCAGGAGTAT+GGG | - | chr3_4:61227968-61227987 | Msa0511620:intron | 45.0% |
| TCGTTCCCTTCTAAGTCTTC+TGG | + | chr3_4:61228029-61228048 | None:intergenic | 45.0% | |
| AGACATTCAAGGAACCGTGA+TGG | - | chr3_4:61228116-61228135 | Msa0511620:intron | 45.0% | |
| !! | CCGTGATGGACGTGTTTATA+TGG | - | chr3_4:61228130-61228149 | Msa0511620:intron | 45.0% |
| CTAAAGGAGGAAGGCCAAAA+AGG | - | chr3_4:61228153-61228172 | Msa0511620:intron | 45.0% | |
| ! | GAGGAAGGCCAAAAAGGTAT+AGG | - | chr3_4:61228159-61228178 | Msa0511620:intron | 45.0% |
| TATGAGAAGAGGGATGAAGG+TGG | - | chr3_4:61228206-61228225 | Msa0511620:CDS | 45.0% | |
| ! | ATGTTTATGGGCTGAAGTGG+AGG | - | chr3_4:61228241-61228260 | Msa0511620:CDS | 45.0% |
| CAAGTGGCATGAGAAAGATG+AGG | - | chr3_4:61228337-61228356 | Msa0511620:CDS | 45.0% | |
| ! | GTCTTGTTGAAGTGTGACAC+AGG | - | chr3_4:61228462-61228481 | Msa0511620:CDS | 45.0% |
| AGTGTGAGCTATAGTGCAGT+TGG | - | chr3_4:61228548-61228567 | Msa0511620:five_prime_UTR | 45.0% | |
| CACACACACACACACACACA+TGG | - | chr3_4:61225308-61225327 | Msa0511620:three_prime_UTR | 50.0% | |
| CACATGGCTTCATCAAGAGG+TGG | - | chr3_4:61225326-61225345 | Msa0511620:three_prime_UTR | 50.0% | |
| AGTGTTGCCAGAATAGCCAC+TGG | + | chr3_4:61226342-61226361 | None:intergenic | 50.0% | |
| AGAGGAGCTAGGAGGATTCT+TGG | + | chr3_4:61226531-61226550 | None:intergenic | 50.0% | |
| TGCACTACAAGTGGCGATGA+AGG | - | chr3_4:61226801-61226820 | Msa0511620:CDS | 50.0% | |
| AGCCTTAAATGACCTTGGCC+TGG | - | chr3_4:61227052-61227071 | Msa0511620:CDS | 50.0% | |
| AAAGGTTGCATACCAGGCCA+AGG | + | chr3_4:61227067-61227086 | None:intergenic | 50.0% | |
| TCAAGCAGCTGCAGCATTAG+AGG | - | chr3_4:61227776-61227795 | Msa0511620:intron | 50.0% | |
| CAGCTGCAGCATTAGAGGAA+CGG | - | chr3_4:61227781-61227800 | Msa0511620:intron | 50.0% | |
| GCTACAAAAGATAGCCGCTG+TGG | - | chr3_4:61227827-61227846 | Msa0511620:intron | 50.0% | |
| ACAAAAGATAGCCGCTGTGG+AGG | - | chr3_4:61227830-61227849 | Msa0511620:intron | 50.0% | |
| ! | GGAGGATAGGATGAAAGCAC+TGG | - | chr3_4:61227848-61227867 | Msa0511620:intron | 50.0% |
| GGACAGTTACAGAGAAACGC+GGG | - | chr3_4:61227869-61227888 | Msa0511620:intron | 50.0% | |
| GACAGTTACAGAGAAACGCG+GGG | - | chr3_4:61227870-61227889 | Msa0511620:intron | 50.0% | |
| ACGCGGGGACATCAGAAAAA+AGG | - | chr3_4:61227885-61227904 | Msa0511620:intron | 50.0% | |
| GTACAGAGGCTAGAACTTGC+AGG | - | chr3_4:61227960-61227979 | Msa0511620:intron | 50.0% | |
| GGCTAGAACTTGCAGGAGTA+TGG | - | chr3_4:61227967-61227986 | Msa0511620:intron | 50.0% | |
| !! | GGAAAAGGTTGAGGCATTGG+AGG | - | chr3_4:61228304-61228323 | Msa0511620:CDS | 50.0% |
| GTGTTTGCAGGACACTCGTC+TGG | - | chr3_4:61226312-61226331 | Msa0511620:intron | 55.0% | |
| TTTGCAGGACACTCGTCTGG+TGG | - | chr3_4:61226315-61226334 | Msa0511620:intron | 55.0% | |
| TGGTGGTCCAGTGGCTATTC+TGG | - | chr3_4:61226332-61226351 | Msa0511620:intron | 55.0% | |
| GCAGATGGGAGGGATACGAT+CGG | + | chr3_4:61226400-61226419 | None:intergenic | 55.0% | |
| AGATAGCCGCTGTGGAGGAT+AGG | - | chr3_4:61227835-61227854 | Msa0511620:intron | 55.0% | |
| !! | CACAGGTGCTGCTTATCCAC+TGG | - | chr3_4:61228479-61228498 | Msa0511620:CDS | 55.0% |
| ACACTCGTCTGGTGGTCCAG+TGG | - | chr3_4:61226323-61226342 | Msa0511620:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 61225139 | 61228706 | 61225139 | ID=Msa0511620;Name=Msa0511620 |
| chr3_4 | mRNA | 61225139 | 61228706 | 61225139 | ID=Msa0511620-mRNA-1;Parent=Msa0511620;Name=Msa0511620-mRNA-1;_AED=0.03;_eAED=0.03;_QI=190|1|1|1|1|1|3|228|614 |
| chr3_4 | exon | 61225139 | 61226092 | 61225139 | ID=Msa0511620-mRNA-1:exon:14891;Parent=Msa0511620-mRNA-1 |
| chr3_4 | exon | 61226772 | 61227566 | 61226772 | ID=Msa0511620-mRNA-1:exon:14890;Parent=Msa0511620-mRNA-1 |
| chr3_4 | exon | 61228193 | 61228706 | 61228193 | ID=Msa0511620-mRNA-1:exon:14889;Parent=Msa0511620-mRNA-1 |
| chr3_4 | five_prime_UTR | 61228517 | 61228706 | 61228517 | ID=Msa0511620-mRNA-1:five_prime_utr;Parent=Msa0511620-mRNA-1 |
| chr3_4 | CDS | 61228193 | 61228516 | 61228193 | ID=Msa0511620-mRNA-1:cds;Parent=Msa0511620-mRNA-1 |
| chr3_4 | CDS | 61226772 | 61227566 | 61226772 | ID=Msa0511620-mRNA-1:cds;Parent=Msa0511620-mRNA-1 |
| chr3_4 | CDS | 61225367 | 61226092 | 61225367 | ID=Msa0511620-mRNA-1:cds;Parent=Msa0511620-mRNA-1 |
| chr3_4 | three_prime_UTR | 61225139 | 61225366 | 61225139 | ID=Msa0511620-mRNA-1:three_prime_utr;Parent=Msa0511620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
