AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0274740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0274740 MtrunA17_Chr2g0286301 97.486 358 9 0 1 358 1 358 0.0 730
Msa0274740 MtrunA17_Chr7g0260671 36.145 166 78 7 98 239 198 359 1.05e-13 72.0
Msa0274740 MtrunA17_Chr2g0283561 31.319 182 90 8 89 237 150 329 6.54e-13 69.3
Msa0274740 MtrunA17_Chr7g0260681 33.735 166 82 7 98 239 198 359 1.04e-12 68.9
Msa0274740 MtrunA17_Chr4g0046011 29.891 184 93 9 83 234 110 289 2.83e-12 67.4
Msa0274740 MtrunA17_Chr7g0250561 29.762 168 90 6 98 239 191 356 2.93e-12 67.4
Msa0274740 MtrunA17_Chr4g0039301 32.919 161 85 5 98 237 223 381 8.55e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0274740 AT5G18640.1 60.694 346 132 4 1 343 1 345 9.32e-159 449
Msa0274740 AT5G18640.3 60.694 346 132 4 1 343 1 345 9.32e-159 449
Msa0274740 AT5G18640.4 60.694 346 132 4 1 343 13 357 1.64e-158 449
Msa0274740 AT5G18640.2 60.694 346 132 4 1 343 13 357 1.64e-158 449
Msa0274740 AT5G18630.2 61.782 348 129 4 1 345 1 347 5.13e-158 447
Msa0274740 AT5G18630.1 61.605 349 129 5 1 345 1 348 3.74e-156 443
Msa0274740 AT5G18640.5 64.336 286 100 2 1 284 1 286 3.70e-140 399
Msa0274740 AT5G18630.3 64.336 286 100 2 1 284 1 286 4.16e-138 394
Msa0274740 AT2G44810.1 31.373 153 90 6 98 237 118 268 8.56e-13 69.3
Msa0274740 AT2G30550.1 31.720 186 90 9 89 240 208 390 1.19e-12 69.3
Msa0274740 AT2G44810.2 31.373 153 90 6 98 237 208 358 1.31e-12 68.9
Msa0274740 AT2G30550.2 31.720 186 90 9 89 240 208 390 2.73e-12 68.2

Find 96 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATGTCCTAACGCTATAAT+TGG 0.247096 2_3:-6616813 None:intergenic
TTTGTAACTCGGATTGTATT+TGG 0.257884 2_3:-6617867 None:intergenic
AATTGCAGAGTATTATAGTA+TGG 0.259826 2_3:+6613687 Msa0274740:intron
TATAGCGTTAGGACATTCTA+TGG 0.261149 2_3:+6616818 Msa0274740:CDS
ACTGGATTGAAGATTTATAT+TGG 0.271080 2_3:+6616574 Msa0274740:CDS
TGTATATATGACTCAATTCT+TGG 0.277794 2_3:+6619207 Msa0274740:three_prime_UTR
ACCATTGCATCGTCCATATC+TGG 0.298803 2_3:-6616618 None:intergenic
TTGAAGAGTCGTGAAGGTTT+TGG 0.306800 2_3:-6613446 None:intergenic
GCCGTTAATGTCTATTGAAT+TGG 0.311622 2_3:+6619041 Msa0274740:exon
CAGGACGTATTGTTGTATTA+TGG 0.319238 2_3:-6616743 None:intergenic
TGATGTCGAGCATTGCTTAC+AGG 0.324280 2_3:+6615665 Msa0274740:CDS
AATGTCCAGGTTATGACATT+TGG 0.325688 2_3:+6617792 Msa0274740:CDS
AGAAGCATATTCCACTAATA+TGG 0.340478 2_3:-6614905 None:intergenic
TGGCTTTATAACATTGGATT+AGG 0.341814 2_3:+6618574 Msa0274740:CDS
AGAATTTCATCAGCCGTAAC+TGG 0.342339 2_3:+6619145 Msa0274740:three_prime_UTR
ACAGACCACTTAGTCTATTA+TGG 0.351770 2_3:+6618855 Msa0274740:CDS
CATTTGGACAACCACGTATT+GGG 0.356503 2_3:+6617808 Msa0274740:CDS
ATCCTATTCTAGGCATTTGT+TGG 0.358162 2_3:+6615815 Msa0274740:intron
TGAAATAAATTATCCAGATA+TGG 0.373021 2_3:+6616605 Msa0274740:CDS
ATAAGCAAATATCATATTCA+TGG 0.381794 2_3:-6619396 None:intergenic
TGTGGTAAATAGTAATAGTA+TGG 0.381803 2_3:-6617918 None:intergenic
GAAGTTTCCTCTTGAATCTC+TGG 0.389569 2_3:-6618952 None:intergenic
ACATTTGGACAACCACGTAT+TGG 0.395829 2_3:+6617807 Msa0274740:CDS
GTAATAGTATGGAGGCAAAT+GGG 0.400466 2_3:-6617907 None:intergenic
GATATTCCAATTATAGCGTT+AGG 0.403714 2_3:+6616807 Msa0274740:CDS
ATAACGATTCTGCATGTTTG+TGG 0.409009 2_3:-6618900 None:intergenic
GAGTAGAGAGTTTGACAATC+AGG 0.409874 2_3:+6619013 Msa0274740:CDS
GATTAGGTAGTCTTGTGTAC+AGG 0.416781 2_3:+6618590 Msa0274740:CDS
TCGCCGCCGCAGAGATTTCC+CGG 0.418853 2_3:-6613486 None:intergenic
AGTAATAGTATGGAGGCAAA+TGG 0.428634 2_3:-6617908 None:intergenic
TACACTTGCTACCATATTAG+TGG 0.437079 2_3:+6614894 Msa0274740:CDS
GCCAATTCAATAGACATTAA+CGG 0.447294 2_3:-6619042 None:intergenic
AACTTCTCTTCCCTTCTCAC+CGG 0.451569 2_3:+6613467 Msa0274740:five_prime_UTR
GGGATTTGAAATTATAGAGT+TGG 0.453939 2_3:+6615638 Msa0274740:intron
CAGGTATGGCTTTATAACAT+TGG 0.454190 2_3:+6618568 Msa0274740:intron
TGGAAGAAGATTGCGTGTAT+AGG 0.459075 2_3:+6619165 Msa0274740:three_prime_UTR
CGCAAGATGACTCGTATGCC+TGG 0.469287 2_3:-6614860 None:intergenic
ACGCAATCTTCTTCCAGTTA+CGG 0.483201 2_3:-6619158 None:intergenic
ATCTCTTGCTACATAATTGT+GGG 0.483947 2_3:+6619072 Msa0274740:three_prime_UTR
ATTAGGTAGTCTTGTGTACA+GGG 0.485417 2_3:+6618591 Msa0274740:CDS
GATAATAGCACGCGGATCAT+CGG 0.490054 2_3:-6615843 None:intergenic
AATTTGAGAAGGGAACTTGT+AGG 0.496423 2_3:-6618990 None:intergenic
CAGAAAATATATTCCCCATT+CGG 0.496961 2_3:+6613512 Msa0274740:five_prime_UTR
GAGAAGATTTGTGATGGATC+TGG 0.505465 2_3:+6618616 Msa0274740:CDS
TATCTCTTGCTACATAATTG+TGG 0.505780 2_3:+6619071 Msa0274740:three_prime_UTR
GGAAATCTCTGCGGCGGCGA+CGG 0.509297 2_3:+6613489 Msa0274740:five_prime_UTR
GTTATGCAACTTACCTCTCT+CGG 0.514324 2_3:-6617960 None:intergenic
TTACGGCTGATGAAATTCTT+CGG 0.514451 2_3:-6619141 None:intergenic
ATTGCAGAGTATTATAGTAT+GGG 0.517876 2_3:+6613688 Msa0274740:intron
AGAGTTTGACAATCAGGAAA+AGG 0.519904 2_3:+6619019 Msa0274740:CDS
ACTTCTCTTCCCTTCTCACC+GGG 0.525031 2_3:+6613468 Msa0274740:five_prime_UTR
ATTCTTCGGCCGCATTTGAA+AGG 0.525812 2_3:-6619127 None:intergenic
AGTCTATTATGGTGTTGACA+TGG 0.533086 2_3:+6618866 Msa0274740:CDS
GTGAGGATCCATCTTGCAGC+AGG 0.534910 2_3:+6618638 Msa0274740:CDS
GTCTATTATGGTGTTGACAT+GGG 0.539346 2_3:+6618867 Msa0274740:CDS
CAGAGATTTCCCGGTGAGAA+GGG 0.540039 2_3:-6613477 None:intergenic
CTTCACAGTCCTTTCAAATG+CGG 0.540660 2_3:+6619118 Msa0274740:three_prime_UTR
GCAGAGATTTCCCGGTGAGA+AGG 0.541085 2_3:-6613478 None:intergenic
CATTTGCAGAACTCAAGACC+AGG 0.543038 2_3:+6614842 Msa0274740:intron
CAACACCATAATAGACTAAG+TGG 0.543275 2_3:-6618860 None:intergenic
ACATTCTATGGGCGGAGCAA+TGG 0.544513 2_3:+6616830 Msa0274740:CDS
TTACCTCTCTCGGAAAGTGC+TGG 0.547597 2_3:-6617950 None:intergenic
TTGACTAACCTGCTGCAAGA+TGG 0.553754 2_3:-6618646 None:intergenic
ACTCTCTACTCAATTTGAGA+AGG 0.553988 2_3:-6619001 None:intergenic
GAGAAGTTGAAGAGTCGTGA+AGG 0.556471 2_3:-6613452 None:intergenic
CTCTCTACTCAATTTGAGAA+GGG 0.557931 2_3:-6619000 None:intergenic
TATCATGGTCATTTGTAACT+CGG 0.558491 2_3:-6617878 None:intergenic
TCCAGATATGGACGATGCAA+TGG 0.561000 2_3:+6616617 Msa0274740:CDS
ACTTGGACGTGCTCTAGATG+TGG 0.563135 2_3:+6615466 Msa0274740:CDS
ATAGTATGGGCAAAACTTCG+TGG 0.564253 2_3:+6613701 Msa0274740:exon
GGACAACCACGTATTGGGAA+TGG 0.564280 2_3:+6617813 Msa0274740:CDS
AGGGTTGAGAAGATTTGTGA+TGG 0.578073 2_3:+6618610 Msa0274740:CDS
GCAAATGGGGAACAATATCA+TGG 0.581870 2_3:-6617893 None:intergenic
GCTATTATCATTGCATTCAG+AGG 0.582162 2_3:+6615857 Msa0274740:CDS
TCAACAGCCCCTAAAACTGC+AGG 0.585625 2_3:-6616762 None:intergenic
GTTGTCCAAATGTCATAACC+TGG 0.593290 2_3:-6617797 None:intergenic
TAATAGTATGGAGGCAAATG+GGG 0.594902 2_3:-6617906 None:intergenic
TATTTAATAAAATTTAACAT+CGG 0.602386 2_3:-6619316 None:intergenic
ATAGCGTTAGGACATTCTAT+GGG 0.614505 2_3:+6616819 Msa0274740:CDS
ATACCAGCACTTTCCGAGAG+AGG 0.625717 2_3:+6617947 Msa0274740:CDS
GGTAAATAGTAATAGTATGG+AGG 0.628678 2_3:-6617915 None:intergenic
TTATGGTGTTGACATGGGAT+CGG 0.634783 2_3:+6618872 Msa0274740:CDS
TAGATGTGGCGACTTGACCA+AGG 0.642125 2_3:+6615480 Msa0274740:CDS
AGCAGCACCAGAGATTCAAG+AGG 0.642364 2_3:+6618945 Msa0274740:CDS
ATTAGTGGAATATGCTTCTG+CGG 0.652645 2_3:+6614909 Msa0274740:CDS
AAGTGCTGGTATGTCTTCTG+TGG 0.655421 2_3:-6617936 None:intergenic
AAAATATATTCCCCATTCGG+TGG 0.657065 2_3:+6613515 Msa0274740:five_prime_UTR
TCACCGGGAAATCTCTGCGG+CGG 0.657670 2_3:+6613483 Msa0274740:five_prime_UTR
TGAAATTCTATACTTAACAT+CGG 0.658609 2_3:-6619232 None:intergenic
GCGTTAGGACATTCTATGGG+CGG 0.665707 2_3:+6616822 Msa0274740:CDS
AAAACACCATTCCCAATACG+TGG 0.686180 2_3:-6617819 None:intergenic
GATTTGTGATGGATCTGGTG+AGG 0.704710 2_3:+6618621 Msa0274740:CDS
TCAGAGGAACTAATGAACAC+AGG 0.707900 2_3:+6615873 Msa0274740:CDS
CATTCTCTACAGGTACATCG+TGG 0.720950 2_3:+6616705 Msa0274740:intron
TTCTCACCGGGAAATCTCTG+CGG 0.725795 2_3:+6613480 Msa0274740:five_prime_UTR
AATGCAATGATAATAGCACG+CGG 0.784321 2_3:-6615851 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTATTTTTTCATTGTT+TGG + chr2_3:6614608-6614627 Msa0274740:intron 10.0%
!!! TAATTATTTTTTCATTGTTT+GGG + chr2_3:6614609-6614628 Msa0274740:intron 10.0%
!! CATAAATAATTTAATAATTG+AGG + chr2_3:6615165-6615184 Msa0274740:intron 10.0%
!! TATGAATTATATACAATAAA+AGG + chr2_3:6615388-6615407 Msa0274740:intron 10.0%
!! ATATAAAAACATAAAAACTA+CGG - chr2_3:6617306-6617325 None:intergenic 10.0%
!!! AAAACAAAATTTTAATGAAT+GGG - chr2_3:6619356-6619375 None:intergenic 10.0%
!! AAAAAGAAATATCTCATATA+TGG - chr2_3:6614665-6614684 None:intergenic 15.0%
!!! AAGATATTTTACATTTAAAC+AGG + chr2_3:6615617-6615636 Msa0274740:intron 15.0%
!!! AGATATTTTACATTTAAACA+GGG + chr2_3:6615618-6615637 Msa0274740:intron 15.0%
!!! TCTTTTTTTCTAAAATATAC+AGG - chr2_3:6616013-6616032 None:intergenic 15.0%
!! AAAAATAAAGACAATACATA+TGG - chr2_3:6616931-6616950 None:intergenic 15.0%
!!! TTTATATTTGTTATTTGTGT+TGG + chr2_3:6617319-6617338 Msa0274740:intron 15.0%
!!! TTATATTTGTTATTTGTGTT+GGG + chr2_3:6617320-6617339 Msa0274740:intron 15.0%
!!! TTAGTTCTTTTAGTTAAATT+TGG + chr2_3:6617474-6617493 Msa0274740:intron 15.0%
!!! CAAAACAAAATTTTAATGAA+TGG - chr2_3:6619357-6619376 None:intergenic 15.0%
!!! CATTCATTAAAATTTTGTTT+TGG + chr2_3:6619355-6619374 Msa0274740:three_prime_UTR 15.0%
!! AGGAAATAATATCAACAATT+AGG + chr2_3:6613973-6613992 Msa0274740:intron 20.0%
!! GGAAATAATATCAACAATTA+GGG + chr2_3:6613974-6613993 Msa0274740:intron 20.0%
!! GTCACATTCTTAAATTTATA+CGG + chr2_3:6614096-6614115 Msa0274740:intron 20.0%
!! TCACATTCTTAAATTTATAC+GGG + chr2_3:6614097-6614116 Msa0274740:intron 20.0%
!!! GATTTGCATTTTAAAATAGT+TGG + chr2_3:6614189-6614208 Msa0274740:intron 20.0%
!! ATCAGAATACCTAATTTAAA+AGG + chr2_3:6614536-6614555 Msa0274740:intron 20.0%
!! TCTGTAAAATAAAGAAGATA+TGG - chr2_3:6615107-6615126 None:intergenic 20.0%
!!! TATCAGTTATTGCATTTTAT+CGG + chr2_3:6615260-6615279 Msa0274740:intron 20.0%
!!! ATAGAATTCATTGTTTCTAT+AGG - chr2_3:6615726-6615745 None:intergenic 20.0%
!! TTATTATTACATCCTATTCT+AGG + chr2_3:6615805-6615824 Msa0274740:intron 20.0%
!!! ATAGATTGTTCTTTTTGAAA+GGG + chr2_3:6616312-6616331 Msa0274740:intron 20.0%
!!! ATGTTTTCTTCATAGTAAAA+TGG - chr2_3:6616430-6616449 None:intergenic 20.0%
!! TGAAATAAATTATCCAGATA+TGG + chr2_3:6616605-6616624 Msa0274740:CDS 20.0%
!! ATGATGATAATATTTCAGAA+TGG - chr2_3:6616688-6616707 None:intergenic 20.0%
!! TATTATTAGAAATTTGAGAG+AGG + chr2_3:6617012-6617031 Msa0274740:intron 20.0%
!! TATATTGTTGAATTTCATGT+AGG - chr2_3:6617126-6617145 None:intergenic 20.0%
!! AGTATGTACAAATTTATAGA+TGG + chr2_3:6617159-6617178 Msa0274740:intron 20.0%
!! ATTTAGTGCATATTACTAAT+AGG + chr2_3:6617365-6617384 Msa0274740:intron 20.0%
!! TTTAGTGCATATTACTAATA+GGG + chr2_3:6617366-6617385 Msa0274740:intron 20.0%
!!! ATTTGGTCTATATATTTTTG+TGG + chr2_3:6617491-6617510 Msa0274740:intron 20.0%
!!! TGATTTTACATTCTTATTAC+AGG + chr2_3:6617752-6617771 Msa0274740:intron 20.0%
!!! TGATTATACTTTGTTTTTTC+TGG + chr2_3:6618059-6618078 Msa0274740:intron 20.0%
!!! AGATCATTATTTTGAATACA+AGG - chr2_3:6618141-6618160 None:intergenic 20.0%
!! TATAACTCTTGGATTATTTA+TGG + chr2_3:6618471-6618490 Msa0274740:intron 20.0%
!!! AAATTGAAAACAAATTTTGC+AGG - chr2_3:6618512-6618531 None:intergenic 20.0%
!! TGAAATTCTATACTTAACAT+CGG - chr2_3:6619235-6619254 None:intergenic 20.0%
!! GAAAGAAAGAAAAAAAAATG+AGG - chr2_3:6619297-6619316 None:intergenic 20.0%
!! AATTGCAGAGTATTATAGTA+TGG + chr2_3:6613687-6613706 Msa0274740:intron 25.0%
!! ATTGCAGAGTATTATAGTAT+GGG + chr2_3:6613688-6613707 Msa0274740:intron 25.0%
! TTTGTCAAACTCTTTCAAAA+GGG - chr2_3:6613954-6613973 None:intergenic 25.0%
! AATACCTAATTTAAAAGGCA+AGG + chr2_3:6614541-6614560 Msa0274740:intron 25.0%
! AAATGCAATAACTGATAGTT+TGG - chr2_3:6615257-6615276 None:intergenic 25.0%
!!! TGACTTAAACTCTAAAATCT+AGG - chr2_3:6615293-6615312 None:intergenic 25.0%
! TACAATAAAAGGACTGAAAT+AGG + chr2_3:6615399-6615418 Msa0274740:intron 25.0%
!! ATTTGACTCAACTTTTTACT+TGG + chr2_3:6615449-6615468 Msa0274740:CDS 25.0%
!!! TTCATTGTTTCTATAGGTAA+AGG - chr2_3:6615720-6615739 None:intergenic 25.0%
!! CATAGATTGTTCTTTTTGAA+AGG + chr2_3:6616311-6616330 Msa0274740:intron 25.0%
!! TTCCTTTTAAACGTGTTTTA+TGG - chr2_3:6616457-6616476 None:intergenic 25.0%
!! TTTTATGTAGTTTACAGAAC+TGG + chr2_3:6616556-6616575 Msa0274740:intron 25.0%
! ACTGGATTGAAGATTTATAT+TGG + chr2_3:6616574-6616593 Msa0274740:CDS 25.0%
! AATATTACAGACACAAAGTA+AGG - chr2_3:6616663-6616682 None:intergenic 25.0%
! ATATTATCATCATTCTCTAC+AGG + chr2_3:6616695-6616714 Msa0274740:intron 25.0%
!!! TAACTATAGTTTAGCTTTCT+TGG + chr2_3:6616880-6616899 Msa0274740:intron 25.0%
!!! TATTGTCTTTATTTTTCCTC+AGG + chr2_3:6616935-6616954 Msa0274740:intron 25.0%
!!! TTTTAGGGAAACATTGTATT+TGG + chr2_3:6616973-6616992 Msa0274740:intron 25.0%
! ATTTCACACAATAGTAGAAA+GGG - chr2_3:6617061-6617080 None:intergenic 25.0%
! AATTTCACACAATAGTAGAA+AGG - chr2_3:6617062-6617081 None:intergenic 25.0%
! AATTCAACAATATAGTGTGT+CGG + chr2_3:6617132-6617151 Msa0274740:intron 25.0%
! ATGTACAAATTTATAGATGG+TGG + chr2_3:6617162-6617181 Msa0274740:intron 25.0%
! AAACTACGGAACAAATTTAT+AGG - chr2_3:6617292-6617311 None:intergenic 25.0%
!!! TCTATATATTTTTGTGGTGT+TGG + chr2_3:6617497-6617516 Msa0274740:intron 25.0%
!!! TTGGATTTTAGTTTTAACCT+TGG - chr2_3:6617543-6617562 None:intergenic 25.0%
!!! CTGATTTGTAGTTTGAATTT+TGG - chr2_3:6617652-6617671 None:intergenic 25.0%
! TAAACAAGAAAAAAATGTCC+AGG + chr2_3:6617779-6617798 Msa0274740:CDS 25.0%
! TGTGGTAAATAGTAATAGTA+TGG - chr2_3:6617921-6617940 None:intergenic 25.0%
! AAAGTATAATCACCATCAAA+GGG - chr2_3:6618051-6618070 None:intergenic 25.0%
!! TATCATTTTGTATTGCTACT+AGG - chr2_3:6618109-6618128 None:intergenic 25.0%
! TGATCTTATCTCTTTCATTA+TGG + chr2_3:6618155-6618174 Msa0274740:intron 25.0%
! AAAACAAACTTTGAATGCAT+AGG - chr2_3:6618189-6618208 None:intergenic 25.0%
!!! TTTTTCAAGAATCTTTGTTG+TGG + chr2_3:6618541-6618560 Msa0274740:intron 25.0%
!!! TTTGAATTATTGCTTTTTGC+AGG + chr2_3:6618811-6618830 Msa0274740:intron 25.0%
! TGTATATATGACTCAATTCT+TGG + chr2_3:6619207-6619226 Msa0274740:three_prime_UTR 25.0%
!!! GTGAAGGTTTTGGATTAAAT+AGG - chr2_3:6613439-6613458 None:intergenic 30.0%
CAGAAAATATATTCCCCATT+CGG + chr2_3:6613512-6613531 Msa0274740:five_prime_UTR 30.0%
AGCAATTAACGTATTCTTGA+CGG + chr2_3:6613636-6613655 Msa0274740:intron 30.0%
AAACGCAAAAAGACATAAAC+AGG - chr2_3:6613743-6613762 None:intergenic 30.0%
GGAATTGTTTCATGTTTGTT+TGG + chr2_3:6613857-6613876 Msa0274740:intron 30.0%
TTGTTTCATGTTTGTTTGGT+TGG + chr2_3:6613861-6613880 Msa0274740:intron 30.0%
!! AATTGAGCTTTATTTGAGAG+TGG + chr2_3:6613887-6613906 Msa0274740:intron 30.0%
!! ATTGAGCTTTATTTGAGAGT+GGG + chr2_3:6613888-6613907 Msa0274740:intron 30.0%
TTTATTTGAGAGTGGGAAAA+TGG + chr2_3:6613895-6613914 Msa0274740:intron 30.0%
TTATTTGAGAGTGGGAAAAT+GGG + chr2_3:6613896-6613915 Msa0274740:intron 30.0%
AAAATGGGGCAAATAGTTAA+AGG + chr2_3:6613911-6613930 Msa0274740:intron 30.0%
CTTTGTCAAACTCTTTCAAA+AGG - chr2_3:6613955-6613974 None:intergenic 30.0%
!! CTTTTGAAAGAGTTTGACAA+AGG + chr2_3:6613953-6613972 Msa0274740:intron 30.0%
TGTATGTGTTAATGCTTCAT+AGG + chr2_3:6614158-6614177 Msa0274740:intron 30.0%
AATAGTTGGACGATTATTGT+TGG + chr2_3:6614203-6614222 Msa0274740:intron 30.0%
ATAGTTGGACGATTATTGTT+GGG + chr2_3:6614204-6614223 Msa0274740:intron 30.0%
ATGCTTGCATTGTATTTGTA+TGG - chr2_3:6614278-6614297 None:intergenic 30.0%
TTGTACTAGATAGTGTATCA+TGG + chr2_3:6614319-6614338 Msa0274740:intron 30.0%
! TGATCCTTGCCTTTTAAATT+AGG - chr2_3:6614548-6614567 None:intergenic 30.0%
AAAGGCAAGGATCAATATTA+TGG + chr2_3:6614554-6614573 Msa0274740:intron 30.0%
AAGGCAAGGATCAATATTAT+GGG + chr2_3:6614555-6614574 Msa0274740:intron 30.0%
ATCTAAGCAATAGACATATC+TGG - chr2_3:6614722-6614741 None:intergenic 30.0%
! GCAAATGAAAAGTGTATCAT+TGG - chr2_3:6614829-6614848 None:intergenic 30.0%
! AGAAGCATATTCCACTAATA+TGG - chr2_3:6614908-6614927 None:intergenic 30.0%
!!! TTTTATTCTAGTCTTGTCAG+AGG + chr2_3:6614996-6615015 Msa0274740:intron 30.0%
!! TTTATTCTAGTCTTGTCAGA+GGG + chr2_3:6614997-6615016 Msa0274740:intron 30.0%
!! GAAAATTTCAAGTTTCAACC+TGG + chr2_3:6615045-6615064 Msa0274740:intron 30.0%
AAAGAAGATATGGTTTGAAG+TGG - chr2_3:6615097-6615116 None:intergenic 30.0%
!!! GAAGTTTTGTTACATGCATT+CGG + chr2_3:6615339-6615358 Msa0274740:intron 30.0%
! TATCTTTAGACCAGCTATTT+TGG - chr2_3:6615603-6615622 None:intergenic 30.0%
! GGGATTTGAAATTATAGAGT+TGG + chr2_3:6615638-6615657 Msa0274740:intron 30.0%
TAATGGTGACTATGGAATTT+GGG - chr2_3:6615939-6615958 None:intergenic 30.0%
TTAATGGTGACTATGGAATT+TGG - chr2_3:6615940-6615959 None:intergenic 30.0%
TTCCATAGTCACCATTAAAA+TGG + chr2_3:6615942-6615961 Msa0274740:intron 30.0%
!! ATCCATTTTAATGGTGACTA+TGG - chr2_3:6615947-6615966 None:intergenic 30.0%
! CTACAATCGATCCATTTTAA+TGG - chr2_3:6615956-6615975 None:intergenic 30.0%
ATACAAACTTCACATGCATA+AGG - chr2_3:6616051-6616070 None:intergenic 30.0%
TTGTGAATGCAATGTATTAC+TGG + chr2_3:6616134-6616153 Msa0274740:intron 30.0%
GAGCAAATGACTAAGTAATA+CGG + chr2_3:6616169-6616188 Msa0274740:intron 30.0%
!!! GTTTTCAGTTTTTTTGCACA+AGG + chr2_3:6616196-6616215 Msa0274740:intron 30.0%
TAGTAAAATGGTTCTCGTAT+AGG - chr2_3:6616418-6616437 None:intergenic 30.0%
GTCCATAAAACACGTTTAAA+AGG + chr2_3:6616452-6616471 Msa0274740:intron 30.0%
! GTTTACGTCTTTCAGATTTT+TGG + chr2_3:6616481-6616500 Msa0274740:intron 30.0%
! GAAAGAGCAAAGAAGTTTTA+TGG + chr2_3:6616783-6616802 Msa0274740:CDS 30.0%
GATATTCCAATTATAGCGTT+AGG + chr2_3:6616807-6616826 Msa0274740:CDS 30.0%
! GTTTTGTGGACTTGATTTAA+CGG + chr2_3:6616857-6616876 Msa0274740:CDS 30.0%
ATTAGAAATTTGAGAGAGGT+CGG + chr2_3:6617016-6617035 Msa0274740:intron 30.0%
! TGAAATTTTGTCTCACTAAC+TGG + chr2_3:6617075-6617094 Msa0274740:intron 30.0%
!!! TTGGCAAATCTTTTTTGACA+AGG + chr2_3:6617242-6617261 Msa0274740:intron 30.0%
TCAGATAAGTTAAAATGCCA+AGG + chr2_3:6617523-6617542 Msa0274740:intron 30.0%
CAAGATATTCCTATTATACG+AGG + chr2_3:6617712-6617731 Msa0274740:intron 30.0%
ATTATGCATCCTCGTATAAT+AGG - chr2_3:6617724-6617743 None:intergenic 30.0%
TTTGTAACTCGGATTGTATT+TGG - chr2_3:6617870-6617889 None:intergenic 30.0%
TATCATGGTCATTTGTAACT+CGG - chr2_3:6617881-6617900 None:intergenic 30.0%
GGTAAATAGTAATAGTATGG+AGG - chr2_3:6617918-6617937 None:intergenic 30.0%
AAGTATAATCACCATCAAAG+GGG - chr2_3:6618050-6618069 None:intergenic 30.0%
CAAAGTATAATCACCATCAA+AGG - chr2_3:6618052-6618071 None:intergenic 30.0%
AGCAATACAAAATGATAACC+TGG + chr2_3:6618112-6618131 Msa0274740:intron 30.0%
! ATTTTGAATACAAGGAAACC+AGG - chr2_3:6618133-6618152 None:intergenic 30.0%
! ACCATGCAATAATTTTGTGT+GGG + chr2_3:6618427-6618446 Msa0274740:intron 30.0%
TTGTCATGATCTATAACTCT+TGG + chr2_3:6618460-6618479 Msa0274740:intron 30.0%
!! TGGCTTTATAACATTGGATT+AGG + chr2_3:6618574-6618593 Msa0274740:CDS 30.0%
! GTTTTCAGTAAGTCAACATT+CGG - chr2_3:6618690-6618709 None:intergenic 30.0%
TTCAAATTTCAGCAGCTATA+TGG - chr2_3:6618797-6618816 None:intergenic 30.0%
GCCAATTCAATAGACATTAA+CGG - chr2_3:6619045-6619064 None:intergenic 30.0%
TATCTCTTGCTACATAATTG+TGG + chr2_3:6619071-6619090 Msa0274740:three_prime_UTR 30.0%
ATCTCTTGCTACATAATTGT+GGG + chr2_3:6619072-6619091 Msa0274740:three_prime_UTR 30.0%
AAAATATATTCCCCATTCGG+TGG + chr2_3:6613515-6613534 Msa0274740:five_prime_UTR 35.0%
! TGTCTTTTTGCGTTTTCAGA+TGG + chr2_3:6613748-6613767 Msa0274740:CDS 35.0%
!! TAGTCTTGTGTGGGTATAAT+TGG + chr2_3:6613836-6613855 Msa0274740:intron 35.0%
TTTCATGTTTGTTTGGTTGG+TGG + chr2_3:6613864-6613883 Msa0274740:intron 35.0%
TATTTGAGAGTGGGAAAATG+GGG + chr2_3:6613897-6613916 Msa0274740:intron 35.0%
! AATATTCTTTTGCTCGTACG+TGG + chr2_3:6614000-6614019 Msa0274740:intron 35.0%
TTAACACATACACATCACCA+GGG - chr2_3:6614150-6614169 None:intergenic 35.0%
ATTAACACATACACATCACC+AGG - chr2_3:6614151-6614170 None:intergenic 35.0%
TTCCCAGAATTGTCAAATAG+CGG - chr2_3:6614401-6614420 None:intergenic 35.0%
! TGACAATTCTGGGAAAACTT+AGG + chr2_3:6614406-6614425 Msa0274740:intron 35.0%
! ACCATAGTCTTTTACTCTTG+TGG + chr2_3:6614785-6614804 Msa0274740:intron 35.0%
TCCACAAGAGTAAAAGACTA+TGG - chr2_3:6614789-6614808 None:intergenic 35.0%
! TACACTTGCTACCATATTAG+TGG + chr2_3:6614894-6614913 Msa0274740:CDS 35.0%
ATTAGTGGAATATGCTTCTG+CGG + chr2_3:6614909-6614928 Msa0274740:CDS 35.0%
AACCTAAGCAATGCATATAG+AGG + chr2_3:6614949-6614968 Msa0274740:intron 35.0%
TTCCTCTATATGCATTGCTT+AGG - chr2_3:6614954-6614973 None:intergenic 35.0%
CCTTAAAACCTACTTAAGCA+AGG - chr2_3:6615071-6615090 None:intergenic 35.0%
! CCTTGCTTAAGTAGGTTTTA+AGG + chr2_3:6615068-6615087 Msa0274740:intron 35.0%
ATCAATGTTAGCATGTGAGA+AGG - chr2_3:6615193-6615212 None:intergenic 35.0%
! TATTGCATTTTATCGGTGTG+TGG + chr2_3:6615267-6615286 Msa0274740:intron 35.0%
TAAAAGGACTGAAATAGGTC+TGG + chr2_3:6615404-6615423 Msa0274740:intron 35.0%
TGTTCATATTATCAGCACCT+TGG - chr2_3:6615500-6615519 None:intergenic 35.0%
AACTCTTCTTCCAAAATAGC+TGG + chr2_3:6615590-6615609 Msa0274740:intron 35.0%
ATCCTATTCTAGGCATTTGT+TGG + chr2_3:6615815-6615834 Msa0274740:intron 35.0%
AATGCAATGATAATAGCACG+CGG - chr2_3:6615854-6615873 None:intergenic 35.0%
GCTATTATCATTGCATTCAG+AGG + chr2_3:6615857-6615876 Msa0274740:CDS 35.0%
!! ACACAGGTGGATTTTATTTC+TGG + chr2_3:6615889-6615908 Msa0274740:intron 35.0%
TGATCCAAAATTGATCAGCA+GGG + chr2_3:6616231-6616250 Msa0274740:intron 35.0%
! GATCATGTTTGAGATGTTGT+AGG + chr2_3:6616280-6616299 Msa0274740:intron 35.0%
GTTCTCGTATAGGTCAATAT+AGG - chr2_3:6616408-6616427 None:intergenic 35.0%
CAGGACGTATTGTTGTATTA+TGG - chr2_3:6616746-6616765 None:intergenic 35.0%
GAATGTCCTAACGCTATAAT+TGG - chr2_3:6616816-6616835 None:intergenic 35.0%
TATAGCGTTAGGACATTCTA+TGG + chr2_3:6616818-6616837 Msa0274740:CDS 35.0%
ATAGCGTTAGGACATTCTAT+GGG + chr2_3:6616819-6616838 Msa0274740:CDS 35.0%
CATATGGAACAACAAAACCT+GGG - chr2_3:6616915-6616934 None:intergenic 35.0%
ACATATGGAACAACAAAACC+TGG - chr2_3:6616916-6616935 None:intergenic 35.0%
!!! TCTTTATTTTTCCTCAGGCA+GGG + chr2_3:6616940-6616959 Msa0274740:intron 35.0%
!!! CAGGGGCTTTGAATATTTTA+GGG + chr2_3:6616958-6616977 Msa0274740:intron 35.0%
TGGACAAGTAAATTGGAACA+GGG + chr2_3:6617433-6617452 Msa0274740:intron 35.0%
! AAATTGGAACAGGGTTTGTT+TGG + chr2_3:6617442-6617461 Msa0274740:intron 35.0%
AATGTCCAGGTTATGACATT+TGG + chr2_3:6617792-6617811 Msa0274740:CDS 35.0%
TAATAGTATGGAGGCAAATG+GGG - chr2_3:6617909-6617928 None:intergenic 35.0%
GTAATAGTATGGAGGCAAAT+GGG - chr2_3:6617910-6617929 None:intergenic 35.0%
AGTAATAGTATGGAGGCAAA+TGG - chr2_3:6617911-6617930 None:intergenic 35.0%
TACAAGCGCGATAATATAAC+TGG - chr2_3:6618012-6618031 None:intergenic 35.0%
!!! TTGTTTTTACCTGTTGCTCA+TGG + chr2_3:6618202-6618221 Msa0274740:intron 35.0%
CAATGACTGCATGCTATTAT+TGG + chr2_3:6618271-6618290 Msa0274740:intron 35.0%
! TGATGCTTGTTTGTCTGTTT+TGG + chr2_3:6618307-6618326 Msa0274740:intron 35.0%
! GATGCTTGTTTGTCTGTTTT+GGG + chr2_3:6618308-6618327 Msa0274740:intron 35.0%
! ATGCTTGTTTGTCTGTTTTG+GGG + chr2_3:6618309-6618328 Msa0274740:intron 35.0%
CTGATAGAGAAGACACAAAT+AGG - chr2_3:6618391-6618410 None:intergenic 35.0%
! GACCATGCAATAATTTTGTG+TGG + chr2_3:6618426-6618445 Msa0274740:intron 35.0%
ACCCACACAAAATTATTGCA+TGG - chr2_3:6618431-6618450 None:intergenic 35.0%
ACTCTTGGATTATTTATGGC+AGG + chr2_3:6618475-6618494 Msa0274740:intron 35.0%
!! CAGGTATGGCTTTATAACAT+TGG + chr2_3:6618568-6618587 Msa0274740:intron 35.0%
!! ATTAGGTAGTCTTGTGTACA+GGG + chr2_3:6618591-6618610 Msa0274740:CDS 35.0%
AATTTCAGCAGCTATATGGA+GGG - chr2_3:6618793-6618812 None:intergenic 35.0%
AAATTTCAGCAGCTATATGG+AGG - chr2_3:6618794-6618813 None:intergenic 35.0%
ACAGACCACTTAGTCTATTA+TGG + chr2_3:6618855-6618874 Msa0274740:CDS 35.0%
CAACACCATAATAGACTAAG+TGG - chr2_3:6618863-6618882 None:intergenic 35.0%
!! AGTCTATTATGGTGTTGACA+TGG + chr2_3:6618866-6618885 Msa0274740:CDS 35.0%
!! GTCTATTATGGTGTTGACAT+GGG + chr2_3:6618867-6618886 Msa0274740:CDS 35.0%
ATAACGATTCTGCATGTTTG+TGG - chr2_3:6618903-6618922 None:intergenic 35.0%
AATTTGAGAAGGGAACTTGT+AGG - chr2_3:6618993-6619012 None:intergenic 35.0%
CTCTCTACTCAATTTGAGAA+GGG - chr2_3:6619003-6619022 None:intergenic 35.0%
ACTCTCTACTCAATTTGAGA+AGG - chr2_3:6619004-6619023 None:intergenic 35.0%
AGAGTTTGACAATCAGGAAA+AGG + chr2_3:6619019-6619038 Msa0274740:CDS 35.0%
GCCGTTAATGTCTATTGAAT+TGG + chr2_3:6619041-6619060 Msa0274740:exon 35.0%
TTACGGCTGATGAAATTCTT+CGG - chr2_3:6619144-6619163 None:intergenic 35.0%
! TTGAAGAGTCGTGAAGGTTT+TGG - chr2_3:6613449-6613468 None:intergenic 40.0%
AATTGCACGAACACGCAATT+TGG + chr2_3:6613603-6613622 Msa0274740:intron 40.0%
ATTGCACGAACACGCAATTT+GGG + chr2_3:6613604-6613623 Msa0274740:intron 40.0%
ATAGTATGGGCAAAACTTCG+TGG + chr2_3:6613701-6613720 Msa0274740:exon 40.0%
! TTTGCGTTTTCAGATGGTAG+AGG + chr2_3:6613754-6613773 Msa0274740:CDS 40.0%
!! TGTGTGTGTTTAGTCTTGTG+TGG + chr2_3:6613826-6613845 Msa0274740:intron 40.0%
!! GTGTGTGTTTAGTCTTGTGT+GGG + chr2_3:6613827-6613846 Msa0274740:intron 40.0%
GAATTGTCAAATAGCGGCAA+TGG - chr2_3:6614395-6614414 None:intergenic 40.0%
TTGCCGCTATTTGACAATTC+TGG + chr2_3:6614395-6614414 Msa0274740:intron 40.0%
TGCCGCTATTTGACAATTCT+GGG + chr2_3:6614396-6614415 Msa0274740:intron 40.0%
!!! GTTTTTGAGTCCAAGAGCAA+GGG - chr2_3:6614477-6614496 None:intergenic 40.0%
CTCTTGGACTCAAAAACCAT+TGG + chr2_3:6614480-6614499 Msa0274740:intron 40.0%
! GAAATGGGTTTATCTGTGCA+TGG + chr2_3:6614509-6614528 Msa0274740:intron 40.0%
GGACATAGTTCGAAGTTGAA+CGG - chr2_3:6614581-6614600 None:intergenic 40.0%
! CATTGGTGTGAAAGTGTGAA+AGG - chr2_3:6614812-6614831 None:intergenic 40.0%
! GAAGATATGGTTTGAAGTGG+TGG - chr2_3:6615094-6615113 None:intergenic 40.0%
! ACTGATAGTTTGGCTAGTTC+TGG - chr2_3:6615247-6615266 None:intergenic 40.0%
TTGTTACATGCATTCGGTCA+AGG + chr2_3:6615345-6615364 Msa0274740:intron 40.0%
CTCCAACAAATGCCTAGAAT+AGG - chr2_3:6615820-6615839 None:intergenic 40.0%
TCAGAGGAACTAATGAACAC+AGG + chr2_3:6615873-6615892 Msa0274740:CDS 40.0%
GCAATGTATTACTGGCATAG+AGG + chr2_3:6616142-6616161 Msa0274740:intron 40.0%
ATGTATTACTGGCATAGAGG+CGG + chr2_3:6616145-6616164 Msa0274740:intron 40.0%
GTGATCCAAAATTGATCAGC+AGG + chr2_3:6616230-6616249 Msa0274740:intron 40.0%
! AGAACCCTGCTGATCAATTT+TGG - chr2_3:6616238-6616257 None:intergenic 40.0%
! ACAATACGTCCTGCAGTTTT+AGG + chr2_3:6616753-6616772 Msa0274740:CDS 40.0%
! CAATACGTCCTGCAGTTTTA+GGG + chr2_3:6616754-6616773 Msa0274740:CDS 40.0%
!! AATACGTCCTGCAGTTTTAG+GGG + chr2_3:6616755-6616774 Msa0274740:CDS 40.0%
TTTCTTGGTATTGTACACCC+AGG + chr2_3:6616895-6616914 Msa0274740:intron 40.0%
!!! GTCTTTATTTTTCCTCAGGC+AGG + chr2_3:6616939-6616958 Msa0274740:intron 40.0%
!!! CTTTATTTTTCCTCAGGCAG+GGG + chr2_3:6616941-6616960 Msa0274740:intron 40.0%
!!! GCAGGGGCTTTGAATATTTT+AGG + chr2_3:6616957-6616976 Msa0274740:intron 40.0%
! TTTTGTCTCACTAACTGGAG+TGG + chr2_3:6617080-6617099 Msa0274740:intron 40.0%
AGTGGACCCATATTATTTGC+TGG + chr2_3:6617098-6617117 Msa0274740:intron 40.0%
GTGGACCCATATTATTTGCT+GGG + chr2_3:6617099-6617118 Msa0274740:intron 40.0%
! TGGACCCATATTATTTGCTG+GGG + chr2_3:6617100-6617119 Msa0274740:intron 40.0%
TAGGCCCCAGCAAATAATAT+GGG - chr2_3:6617107-6617126 None:intergenic 40.0%
GTCTCAAGCTTAGGTAAAAG+AGG + chr2_3:6617184-6617203 Msa0274740:intron 40.0%
TCAAGCTTAGGTAAAAGAGG+AGG + chr2_3:6617187-6617206 Msa0274740:intron 40.0%
CAAGCTTAGGTAAAAGAGGA+GGG + chr2_3:6617188-6617207 Msa0274740:intron 40.0%
! AAACTTTTCCATAGCTGCCA+GGG - chr2_3:6617224-6617243 None:intergenic 40.0%
ACAAGGATCAACAATGTAGC+TGG + chr2_3:6617259-6617278 Msa0274740:intron 40.0%
AATTTACTTGTCCAGCGGTT+AGG - chr2_3:6617427-6617446 None:intergenic 40.0%
TAACCGCTGGACAAGTAAAT+TGG + chr2_3:6617426-6617445 Msa0274740:intron 40.0%
GTTCCAATTTACTTGTCCAG+CGG - chr2_3:6617432-6617451 None:intergenic 40.0%
CTGGACAAGTAAATTGGAAC+AGG + chr2_3:6617432-6617451 Msa0274740:intron 40.0%
GTTGTCCAAATGTCATAACC+TGG - chr2_3:6617800-6617819 None:intergenic 40.0%
ACATTTGGACAACCACGTAT+TGG + chr2_3:6617807-6617826 Msa0274740:CDS 40.0%
CATTTGGACAACCACGTATT+GGG + chr2_3:6617808-6617827 Msa0274740:CDS 40.0%
AAAACACCATTCCCAATACG+TGG - chr2_3:6617822-6617841 None:intergenic 40.0%
GCAAATGGGGAACAATATCA+TGG - chr2_3:6617896-6617915 None:intergenic 40.0%
GTTATGCAACTTACCTCTCT+CGG - chr2_3:6617963-6617982 None:intergenic 40.0%
! GAATCTTTGTTGTGGATTGC+AGG + chr2_3:6618549-6618568 Msa0274740:intron 40.0%
! TTTGTTGTGGATTGCAGGTA+TGG + chr2_3:6618554-6618573 Msa0274740:intron 40.0%
!! GATTAGGTAGTCTTGTGTAC+AGG + chr2_3:6618590-6618609 Msa0274740:CDS 40.0%
AGGGTTGAGAAGATTTGTGA+TGG + chr2_3:6618610-6618629 Msa0274740:CDS 40.0%
!! GAGAAGATTTGTGATGGATC+TGG + chr2_3:6618616-6618635 Msa0274740:CDS 40.0%
!! TTATGGTGTTGACATGGGAT+CGG + chr2_3:6618872-6618891 Msa0274740:CDS 40.0%
GAAGTTTCCTCTTGAATCTC+TGG - chr2_3:6618955-6618974 None:intergenic 40.0%
GAGTAGAGAGTTTGACAATC+AGG + chr2_3:6619013-6619032 Msa0274740:CDS 40.0%
CTTCACAGTCCTTTCAAATG+CGG + chr2_3:6619118-6619137 Msa0274740:three_prime_UTR 40.0%
AGAATTTCATCAGCCGTAAC+TGG + chr2_3:6619145-6619164 Msa0274740:three_prime_UTR 40.0%
ACGCAATCTTCTTCCAGTTA+CGG - chr2_3:6619161-6619180 None:intergenic 40.0%
TGGAAGAAGATTGCGTGTAT+AGG + chr2_3:6619165-6619184 Msa0274740:three_prime_UTR 40.0%
GAGAAGTTGAAGAGTCGTGA+AGG - chr2_3:6613455-6613474 None:intergenic 45.0%
AACTTCTCTTCCCTTCTCAC+CGG + chr2_3:6613467-6613486 Msa0274740:five_prime_UTR 45.0%
AGAAAAAACGCCACCGAATG+GGG - chr2_3:6613528-6613547 None:intergenic 45.0%
CAGAAAAAACGCCACCGAAT+GGG - chr2_3:6613529-6613548 None:intergenic 45.0%
ACAGAAAAAACGCCACCGAA+TGG - chr2_3:6613530-6613549 None:intergenic 45.0%
! TCGGGCACAATTAGAAGTGT+TGG - chr2_3:6614044-6614063 None:intergenic 45.0%
ATCACGTGTGTCTGTCACAT+CGG - chr2_3:6614063-6614082 None:intergenic 45.0%
CGACATGATTGTGTAGTGTC+TGG + chr2_3:6614123-6614142 Msa0274740:intron 45.0%
AGCGCTGTATTGCGAAAAAC+TGG + chr2_3:6614234-6614253 Msa0274740:intron 45.0%
!!! GGTTTTTGAGTCCAAGAGCA+AGG - chr2_3:6614478-6614497 None:intergenic 45.0%
TGGACTCAAAAACCATTGGC+AGG + chr2_3:6614484-6614503 Msa0274740:intron 45.0%
GGACTCAAAAACCATTGGCA+GGG + chr2_3:6614485-6614504 Msa0274740:intron 45.0%
AAACCATTGGCAGGGTGAAA+TGG + chr2_3:6614493-6614512 Msa0274740:intron 45.0%
AACCATTGGCAGGGTGAAAT+GGG + chr2_3:6614494-6614513 Msa0274740:intron 45.0%
CATTTGCAGAACTCAAGACC+AGG + chr2_3:6614842-6614861 Msa0274740:intron 45.0%
! AGTCTTGTCAGAGGGTTGAT+CGG + chr2_3:6615005-6615024 Msa0274740:intron 45.0%
AAACCTACTTAAGCAAGGCC+AGG - chr2_3:6615066-6615085 None:intergenic 45.0%
TTCGGTCAAGGCAAATCATG+TGG + chr2_3:6615357-6615376 Msa0274740:intron 45.0%
TCGGTCAAGGCAAATCATGT+GGG + chr2_3:6615358-6615377 Msa0274740:intron 45.0%
!! GAAATAGGTCTGGTTCTTGC+AGG + chr2_3:6615414-6615433 Msa0274740:intron 45.0%
! TGATGTCGAGCATTGCTTAC+AGG + chr2_3:6615665-6615684 Msa0274740:CDS 45.0%
GATAATAGCACGCGGATCAT+CGG - chr2_3:6615846-6615865 None:intergenic 45.0%
GAGGAACTAATGAACACAGG+TGG + chr2_3:6615876-6615895 Msa0274740:intron 45.0%
TCCAGATATGGACGATGCAA+TGG + chr2_3:6616617-6616636 Msa0274740:CDS 45.0%
ACCATTGCATCGTCCATATC+TGG - chr2_3:6616621-6616640 None:intergenic 45.0%
CATTCTCTACAGGTACATCG+TGG + chr2_3:6616705-6616724 Msa0274740:intron 45.0%
GTAGGCCCCAGCAAATAATA+TGG - chr2_3:6617108-6617127 None:intergenic 45.0%
! TAGATGGTGGTCTCAAGCTT+AGG + chr2_3:6617175-6617194 Msa0274740:intron 45.0%
GTATTATACCCTGGCAGCTA+TGG + chr2_3:6617213-6617232 Msa0274740:intron 45.0%
! CAAACTTTTCCATAGCTGCC+AGG - chr2_3:6617225-6617244 None:intergenic 45.0%
CTGGCAGCTATGGAAAAGTT+TGG + chr2_3:6617223-6617242 Msa0274740:intron 45.0%
CAAGAAATGAACCTAACCGC+TGG + chr2_3:6617413-6617432 Msa0274740:intron 45.0%
GTGTTCATGAGCTGATTGGT+TGG - chr2_3:6617562-6617581 None:intergenic 45.0%
TCGAGTGTTCATGAGCTGAT+TGG - chr2_3:6617566-6617585 None:intergenic 45.0%
!! AAGTGCTGGTATGTCTTCTG+TGG - chr2_3:6617939-6617958 None:intergenic 45.0%
GAAAGCTGTATCCCCTTTGA+TGG + chr2_3:6618036-6618055 Msa0274740:intron 45.0%
TAGGAACCTCTCACATTGCT+GGG - chr2_3:6618372-6618391 None:intergenic 45.0%
ATAGGAACCTCTCACATTGC+TGG - chr2_3:6618373-6618392 None:intergenic 45.0%
!! GATTTGTGATGGATCTGGTG+AGG + chr2_3:6618621-6618640 Msa0274740:CDS 45.0%
TTGACTAACCTGCTGCAAGA+TGG - chr2_3:6618649-6618668 None:intergenic 45.0%
TGAAAACTTTGCCACTGCAG+TGG + chr2_3:6618703-6618722 Msa0274740:intron 45.0%
ACTAGTAGAATCCACTGCAG+TGG - chr2_3:6618717-6618736 None:intergenic 45.0%
! CTTTTTGCAGGTCAGTGAGT+GGG + chr2_3:6618823-6618842 Msa0274740:intron 45.0%
ATTCTTCGGCCGCATTTGAA+AGG - chr2_3:6619130-6619149 None:intergenic 45.0%
!! ATAAAATAAAATAACAATTA+GGG - chr2_3:6613570-6613589 None:intergenic 5.0%
!! AATAAAATAAAATAACAATT+AGG - chr2_3:6613571-6613590 None:intergenic 5.0%
!! GAAAAAATAATTAAAATAAA+AGG - chr2_3:6614602-6614621 None:intergenic 5.0%
!! ATTATTAAATTATTTATGTT+AGG - chr2_3:6615163-6615182 None:intergenic 5.0%
!! ATAAATAATTTAATAATTGA+GGG + chr2_3:6615166-6615185 Msa0274740:intron 5.0%
!! TATTTAATAAAATTTAACAT+CGG - chr2_3:6619319-6619338 None:intergenic 5.0%
ACTTCTCTTCCCTTCTCACC+GGG + chr2_3:6613468-6613487 Msa0274740:five_prime_UTR 50.0%
CAGAGATTTCCCGGTGAGAA+GGG - chr2_3:6613480-6613499 None:intergenic 50.0%
TTCTCACCGGGAAATCTCTG+CGG + chr2_3:6613480-6613499 Msa0274740:five_prime_UTR 50.0%
!! GTTGGTGCTACAGAGATGCT+AGG - chr2_3:6614026-6614045 None:intergenic 50.0%
TCACGTGTGTCTGTCACATC+GGG - chr2_3:6614062-6614081 None:intergenic 50.0%
ATTGTGTAGTGTCTGGTCCC+TGG + chr2_3:6614130-6614149 Msa0274740:intron 50.0%
TACAGCTGTTCCCTTGCTCT+TGG + chr2_3:6614464-6614483 Msa0274740:intron 50.0%
AACCCATTTCACCCTGCCAA+TGG - chr2_3:6614499-6614518 None:intergenic 50.0%
! GTCTTGTCAGAGGGTTGATC+GGG + chr2_3:6615006-6615025 Msa0274740:intron 50.0%
!! CAACCTGGCCTTGCTTAAGT+AGG + chr2_3:6615060-6615079 Msa0274740:intron 50.0%
! ACTTGGACGTGCTCTAGATG+TGG + chr2_3:6615466-6615485 Msa0274740:CDS 50.0%
TAGATGTGGCGACTTGACCA+AGG + chr2_3:6615480-6615499 Msa0274740:CDS 50.0%
! GTCGAGCATTGCTTACAGGT+CGG + chr2_3:6615669-6615688 Msa0274740:intron 50.0%
TCAACAGCCCCTAAAACTGC+AGG - chr2_3:6616765-6616784 None:intergenic 50.0%
GCGTTAGGACATTCTATGGG+CGG + chr2_3:6616822-6616841 Msa0274740:CDS 50.0%
ACATTCTATGGGCGGAGCAA+TGG + chr2_3:6616830-6616849 Msa0274740:CDS 50.0%
ATATTCAAAGCCCCTGCCTG+AGG - chr2_3:6616954-6616973 None:intergenic 50.0%
AGGAGGGCTGTATTATACCC+TGG + chr2_3:6617204-6617223 Msa0274740:intron 50.0%
GGACAACCACGTATTGGGAA+TGG + chr2_3:6617813-6617832 Msa0274740:CDS 50.0%
ATACCAGCACTTTCCGAGAG+AGG + chr2_3:6617947-6617966 Msa0274740:CDS 50.0%
! TTACCTCTCTCGGAAAGTGC+TGG - chr2_3:6617953-6617972 None:intergenic 50.0%
AAGAGTGAGCCATGAGCAAC+AGG - chr2_3:6618214-6618233 None:intergenic 50.0%
TCAGCAGCTATATGGAGGGT+TGG - chr2_3:6618789-6618808 None:intergenic 50.0%
! GCTTTTTGCAGGTCAGTGAG+TGG + chr2_3:6618822-6618841 Msa0274740:intron 50.0%
AGCAGCACCAGAGATTCAAG+AGG + chr2_3:6618945-6618964 Msa0274740:CDS 50.0%
GCAGAGATTTCCCGGTGAGA+AGG - chr2_3:6613481-6613500 None:intergenic 55.0%
CGCAAGATGACTCGTATGCC+TGG - chr2_3:6614863-6614882 None:intergenic 55.0%
GCTATGAGCTGGTCAGGATG+AGG - chr2_3:6615225-6615244 None:intergenic 55.0%
! GTTCTGGCTATGAGCTGGTC+AGG - chr2_3:6615231-6615250 None:intergenic 55.0%
!! GGCTAGTTCTGGCTATGAGC+TGG - chr2_3:6615236-6615255 None:intergenic 55.0%
! GGAGCAATGGCTGCGTTTTG+TGG + chr2_3:6616843-6616862 Msa0274740:CDS 55.0%
TTGCTGGGTGTGCAGAGAGT+TGG - chr2_3:6618357-6618376 None:intergenic 55.0%
TGCACACCCAGCAATGTGAG+AGG + chr2_3:6618363-6618382 Msa0274740:intron 55.0%
GTGAGGATCCATCTTGCAGC+AGG + chr2_3:6618638-6618657 Msa0274740:CDS 55.0%
TCACCGGGAAATCTCTGCGG+CGG + chr2_3:6613483-6613502 Msa0274740:five_prime_UTR 60.0%
TCGCCGCCGCAGAGATTTCC+CGG - chr2_3:6613489-6613508 None:intergenic 65.0%
GGAAATCTCTGCGGCGGCGA+CGG + chr2_3:6613489-6613508 Msa0274740:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 6613424 6619408 6613424 ID=Msa0274740;Name=Msa0274740
chr2_3 mRNA 6613424 6619408 6613424 ID=Msa0274740-mRNA-1;Parent=Msa0274740;Name=Msa0274740-mRNA-1;_AED=0.07;_eAED=0.07;_QI=141|1|1|1|0.8|0.81|11|350|358
chr2_3 exon 6613424 6613553 6613424 ID=Msa0274740-mRNA-1:exon:3114;Parent=Msa0274740-mRNA-1
chr2_3 exon 6613695 6613775 6613695 ID=Msa0274740-mRNA-1:exon:3115;Parent=Msa0274740-mRNA-1
chr2_3 exon 6614851 6614930 6614851 ID=Msa0274740-mRNA-1:exon:3116;Parent=Msa0274740-mRNA-1
chr2_3 exon 6615436 6615501 6615436 ID=Msa0274740-mRNA-1:exon:3117;Parent=Msa0274740-mRNA-1
chr2_3 exon 6615639 6615686 6615639 ID=Msa0274740-mRNA-1:exon:3118;Parent=Msa0274740-mRNA-1
chr2_3 exon 6615827 6615894 6615827 ID=Msa0274740-mRNA-1:exon:3119;Parent=Msa0274740-mRNA-1
chr2_3 exon 6616566 6616638 6616566 ID=Msa0274740-mRNA-1:exon:3120;Parent=Msa0274740-mRNA-1
chr2_3 exon 6616717 6616878 6616717 ID=Msa0274740-mRNA-1:exon:3121;Parent=Msa0274740-mRNA-1
chr2_3 exon 6617774 6617968 6617774 ID=Msa0274740-mRNA-1:exon:3122;Parent=Msa0274740-mRNA-1
chr2_3 exon 6618571 6618659 6618571 ID=Msa0274740-mRNA-1:exon:3123;Parent=Msa0274740-mRNA-1
chr2_3 exon 6618833 6619408 6618833 ID=Msa0274740-mRNA-1:exon:3124;Parent=Msa0274740-mRNA-1
chr2_3 five_prime_UTR 6613424 6613553 6613424 ID=Msa0274740-mRNA-1:five_prime_utr;Parent=Msa0274740-mRNA-1
chr2_3 five_prime_UTR 6613695 6613705 6613695 ID=Msa0274740-mRNA-1:five_prime_utr;Parent=Msa0274740-mRNA-1
chr2_3 CDS 6613706 6613775 6613706 ID=Msa0274740-mRNA-1:cds;Parent=Msa0274740-mRNA-1
chr2_3 CDS 6614851 6614930 6614851 ID=Msa0274740-mRNA-1:cds;Parent=Msa0274740-mRNA-1
chr2_3 CDS 6615436 6615501 6615436 ID=Msa0274740-mRNA-1:cds;Parent=Msa0274740-mRNA-1
chr2_3 CDS 6615639 6615686 6615639 ID=Msa0274740-mRNA-1:cds;Parent=Msa0274740-mRNA-1
chr2_3 CDS 6615827 6615894 6615827 ID=Msa0274740-mRNA-1:cds;Parent=Msa0274740-mRNA-1
chr2_3 CDS 6616566 6616638 6616566 ID=Msa0274740-mRNA-1:cds;Parent=Msa0274740-mRNA-1
chr2_3 CDS 6616717 6616878 6616717 ID=Msa0274740-mRNA-1:cds;Parent=Msa0274740-mRNA-1
chr2_3 CDS 6617774 6617968 6617774 ID=Msa0274740-mRNA-1:cds;Parent=Msa0274740-mRNA-1
chr2_3 CDS 6618571 6618659 6618571 ID=Msa0274740-mRNA-1:cds;Parent=Msa0274740-mRNA-1
chr2_3 CDS 6618833 6619058 6618833 ID=Msa0274740-mRNA-1:cds;Parent=Msa0274740-mRNA-1
chr2_3 three_prime_UTR 6619059 6619408 6619059 ID=Msa0274740-mRNA-1:three_prime_utr;Parent=Msa0274740-mRNA-1
Gene Sequence

>Msa0274740

ATGGGCAAAACTTCGTGGTGCTTGATTTTTGTTACCTGTTTATGTCTTTTTGCGTTTTCAGATGGTAGAGAACTCAAGACCAGGCATACGAGTCATCTTGCGCAGTATAATCATACACTTGCTACCATATTAGTGGAATATGCTTCTGCGGTATACTTGTCAGATTTGACTCAACTTTTTACTTGGACGTGCTCTAGATGTGGCGACTTGACCAAGGGATTTGAAATTATAGAGTTGGTTGTTGATGTCGAGCATTGCTTACAGGCATTTGTTGGAGTAGCCGATGATCCGCGTGCTATTATCATTGCATTCAGAGGAACTAATGAACACAGTTTACAGAACTGGATTGAAGATTTATATTGGAAACAGCATGAAATAAATTATCCAGATATGGACGATGCAATGGTACATCGTGGTTTTTATACTGCATACCATAATACAACAATACGTCCTGCAGTTTTAGGGGCTGTTGAAAGAGCAAAGAAGTTTTATGGAGATATTCCAATTATAGCGTTAGGACATTCTATGGGCGGAGCAATGGCTGCGTTTTGTGGACTTGATTTAACGGTAAATAAACAAGAAAAAAATGTCCAGGTTATGACATTTGGACAACCACGTATTGGGAATGGTGTTTTTGTATCTCTCTACAGCAAACTAGTTCCAAATACAATCCGAGTTACAAATGACCATGATATTGTTCCCCATTTGCCTCCATACTATTACTATTTACCACAGAAGACATACCAGCACTTTCCGAGAGAGGTATGGCTTTATAACATTGGATTAGGTAGTCTTGTGTACAGGGTTGAGAAGATTTGTGATGGATCTGGTGAGGATCCATCTTGCAGCAGGTCAGTGAGTGGGAATAGCATCACAGACCACTTAGTCTATTATGGTGTTGACATGGGATCGGATGATCCACAAACATGCAGAATCGTTATGAATTCTGACGTTCTGAGAACTAGCAGCACCAGAGATTCAAGAGGAAACTTCATCTTATCTAGAGATCCTACAAGTTCCCTTCTCAAATTGAGTAGAGAGTTTGACAATCAGGAAAAGGCCGTTAATGTCTATTGA

Protein sequence

>Msa0274740

MGKTSWCLIFVTCLCLFAFSDGRELKTRHTSHLAQYNHTLATILVEYASAVYLSDLTQLFTWTCSRCGDLTKGFEIIELVVDVEHCLQAFVGVADDPRAIIIAFRGTNEHSLQNWIEDLYWKQHEINYPDMDDAMVHRGFYTAYHNTTIRPAVLGAVERAKKFYGDIPIIALGHSMGGAMAAFCGLDLTVNKQEKNVQVMTFGQPRIGNGVFVSLYSKLVPNTIRVTNDHDIVPHLPPYYYYLPQKTYQHFPREVWLYNIGLGSLVYRVEKICDGSGEDPSCSRSVSGNSITDHLVYYGVDMGSDDPQTCRIVMNSDVLRTSSTRDSRGNFILSRDPTSSLLKLSREFDNQEKAVNVY*