AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0315540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0315540 MtrunA17_Chr2g0286301 97.486 358 9 0 1 358 1 358 0.0 730
Msa0315540 MtrunA17_Chr7g0260671 36.145 166 78 7 98 239 198 359 1.05e-13 72.0
Msa0315540 MtrunA17_Chr2g0283561 31.319 182 90 8 89 237 150 329 6.54e-13 69.3
Msa0315540 MtrunA17_Chr7g0260681 33.735 166 82 7 98 239 198 359 1.04e-12 68.9
Msa0315540 MtrunA17_Chr4g0046011 29.891 184 93 9 83 234 110 289 2.83e-12 67.4
Msa0315540 MtrunA17_Chr7g0250561 29.762 168 90 6 98 239 191 356 2.93e-12 67.4
Msa0315540 MtrunA17_Chr4g0039301 32.919 161 85 5 98 237 223 381 8.55e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0315540 AT5G18640.1 60.694 346 132 4 1 343 1 345 9.32e-159 449
Msa0315540 AT5G18640.3 60.694 346 132 4 1 343 1 345 9.32e-159 449
Msa0315540 AT5G18640.4 60.694 346 132 4 1 343 13 357 1.64e-158 449
Msa0315540 AT5G18640.2 60.694 346 132 4 1 343 13 357 1.64e-158 449
Msa0315540 AT5G18630.2 61.782 348 129 4 1 345 1 347 5.13e-158 447
Msa0315540 AT5G18630.1 61.605 349 129 5 1 345 1 348 3.74e-156 443
Msa0315540 AT5G18640.5 64.336 286 100 2 1 284 1 286 3.70e-140 399
Msa0315540 AT5G18630.3 64.336 286 100 2 1 284 1 286 4.16e-138 394
Msa0315540 AT2G44810.1 31.373 153 90 6 98 237 118 268 8.56e-13 69.3
Msa0315540 AT2G30550.1 31.720 186 90 9 89 240 208 390 1.19e-12 69.3
Msa0315540 AT2G44810.2 31.373 153 90 6 98 237 208 358 1.31e-12 68.9
Msa0315540 AT2G30550.2 31.720 186 90 9 89 240 208 390 2.73e-12 68.2

Find 96 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATGTCCTAACGCTATAAT+TGG 0.247096 2_4:-12010654 None:intergenic
TTTGTAACTCGGATTGTATT+TGG 0.257884 2_4:-12011707 None:intergenic
AATTGCAGAGTATTATAGTA+TGG 0.259826 2_4:+12007528 Msa0315540:intron
TATAGCGTTAGGACATTCTA+TGG 0.261149 2_4:+12010659 Msa0315540:CDS
ACTGGATTGAAGATTTATAT+TGG 0.271080 2_4:+12010415 Msa0315540:CDS
TGTATATATGACTCAATTCT+TGG 0.277794 2_4:+12013047 Msa0315540:three_prime_UTR
ACCATTGCATCGTCCATATC+TGG 0.298803 2_4:-12010459 None:intergenic
TTGAAGAGTCGTGAAGGTTT+TGG 0.306800 2_4:-12007287 None:intergenic
GCCGTTAATGTCTATTGAAT+TGG 0.311622 2_4:+12012881 Msa0315540:exon
CAGGACGTATTGTTGTATTA+TGG 0.319238 2_4:-12010584 None:intergenic
TGATGTCGAGCATTGCTTAC+AGG 0.324280 2_4:+12009506 Msa0315540:CDS
AATGTCCAGGTTATGACATT+TGG 0.325688 2_4:+12011632 Msa0315540:CDS
AGAAGCATATTCCACTAATA+TGG 0.340478 2_4:-12008746 None:intergenic
TGGCTTTATAACATTGGATT+AGG 0.341814 2_4:+12012414 Msa0315540:CDS
AGAATTTCATCAGCCGTAAC+TGG 0.342339 2_4:+12012985 Msa0315540:three_prime_UTR
ACAGACCACTTAGTCTATTA+TGG 0.351770 2_4:+12012695 Msa0315540:CDS
CATTTGGACAACCACGTATT+GGG 0.356503 2_4:+12011648 Msa0315540:CDS
ATCCTATTCTAGGCATTTGT+TGG 0.358162 2_4:+12009656 Msa0315540:intron
TGAAATAAATTATCCAGATA+TGG 0.373021 2_4:+12010446 Msa0315540:CDS
ATAAGCAAATATCATATTCA+TGG 0.381794 2_4:-12013236 None:intergenic
TGTGGTAAATAGTAATAGTA+TGG 0.381803 2_4:-12011758 None:intergenic
GAAGTTTCCTCTTGAATCTC+TGG 0.389569 2_4:-12012792 None:intergenic
ACATTTGGACAACCACGTAT+TGG 0.395829 2_4:+12011647 Msa0315540:CDS
GTAATAGTATGGAGGCAAAT+GGG 0.400466 2_4:-12011747 None:intergenic
GATATTCCAATTATAGCGTT+AGG 0.403714 2_4:+12010648 Msa0315540:CDS
ATAACGATTCTGCATGTTTG+TGG 0.409009 2_4:-12012740 None:intergenic
GAGTAGAGAGTTTGACAATC+AGG 0.409874 2_4:+12012853 Msa0315540:CDS
GATTAGGTAGTCTTGTGTAC+AGG 0.416781 2_4:+12012430 Msa0315540:CDS
TCGCCGCCGCAGAGATTTCC+CGG 0.418853 2_4:-12007327 None:intergenic
AGTAATAGTATGGAGGCAAA+TGG 0.428634 2_4:-12011748 None:intergenic
TACACTTGCTACCATATTAG+TGG 0.437079 2_4:+12008735 Msa0315540:CDS
GCCAATTCAATAGACATTAA+CGG 0.447294 2_4:-12012882 None:intergenic
AACTTCTCTTCCCTTCTCAC+CGG 0.451569 2_4:+12007308 Msa0315540:five_prime_UTR
GGGATTTGAAATTATAGAGT+TGG 0.453939 2_4:+12009479 Msa0315540:intron
CAGGTATGGCTTTATAACAT+TGG 0.454190 2_4:+12012408 Msa0315540:intron
TGGAAGAAGATTGCGTGTAT+AGG 0.459075 2_4:+12013005 Msa0315540:three_prime_UTR
CGCAAGATGACTCGTATGCC+TGG 0.469287 2_4:-12008701 None:intergenic
ACGCAATCTTCTTCCAGTTA+CGG 0.483201 2_4:-12012998 None:intergenic
ATCTCTTGCTACATAATTGT+GGG 0.483947 2_4:+12012912 Msa0315540:three_prime_UTR
ATTAGGTAGTCTTGTGTACA+GGG 0.485417 2_4:+12012431 Msa0315540:CDS
GATAATAGCACGCGGATCAT+CGG 0.490054 2_4:-12009684 None:intergenic
AATTTGAGAAGGGAACTTGT+AGG 0.496423 2_4:-12012830 None:intergenic
CAGAAAATATATTCCCCATT+CGG 0.496961 2_4:+12007353 Msa0315540:five_prime_UTR
GAGAAGATTTGTGATGGATC+TGG 0.505465 2_4:+12012456 Msa0315540:CDS
TATCTCTTGCTACATAATTG+TGG 0.505780 2_4:+12012911 Msa0315540:three_prime_UTR
GGAAATCTCTGCGGCGGCGA+CGG 0.509297 2_4:+12007330 Msa0315540:five_prime_UTR
GTTATGCAACTTACCTCTCT+CGG 0.514324 2_4:-12011800 None:intergenic
TTACGGCTGATGAAATTCTT+CGG 0.514451 2_4:-12012981 None:intergenic
ATTGCAGAGTATTATAGTAT+GGG 0.517876 2_4:+12007529 Msa0315540:intron
AGAGTTTGACAATCAGGAAA+AGG 0.519904 2_4:+12012859 Msa0315540:CDS
ACTTCTCTTCCCTTCTCACC+GGG 0.525031 2_4:+12007309 Msa0315540:five_prime_UTR
ATTCTTCGGCCGCATTTGAA+AGG 0.525812 2_4:-12012967 None:intergenic
AGTCTATTATGGTGTTGACA+TGG 0.533086 2_4:+12012706 Msa0315540:CDS
GTGAGGATCCATCTTGCAGC+AGG 0.534910 2_4:+12012478 Msa0315540:CDS
GTCTATTATGGTGTTGACAT+GGG 0.539346 2_4:+12012707 Msa0315540:CDS
CAGAGATTTCCCGGTGAGAA+GGG 0.540039 2_4:-12007318 None:intergenic
CTTCACAGTCCTTTCAAATG+CGG 0.540660 2_4:+12012958 Msa0315540:three_prime_UTR
GCAGAGATTTCCCGGTGAGA+AGG 0.541085 2_4:-12007319 None:intergenic
CATTTGCAGAACTCAAGACC+AGG 0.543038 2_4:+12008683 Msa0315540:intron
CAACACCATAATAGACTAAG+TGG 0.543275 2_4:-12012700 None:intergenic
ACATTCTATGGGCGGAGCAA+TGG 0.544513 2_4:+12010671 Msa0315540:CDS
TTACCTCTCTCGGAAAGTGC+TGG 0.547597 2_4:-12011790 None:intergenic
TTGACTAACCTGCTGCAAGA+TGG 0.553754 2_4:-12012486 None:intergenic
ACTCTCTACTCAATTTGAGA+AGG 0.553988 2_4:-12012841 None:intergenic
GAGAAGTTGAAGAGTCGTGA+AGG 0.556471 2_4:-12007293 None:intergenic
CTCTCTACTCAATTTGAGAA+GGG 0.557931 2_4:-12012840 None:intergenic
TATCATGGTCATTTGTAACT+CGG 0.558491 2_4:-12011718 None:intergenic
TCCAGATATGGACGATGCAA+TGG 0.561000 2_4:+12010458 Msa0315540:CDS
ACTTGGACGTGCTCTAGATG+TGG 0.563135 2_4:+12009307 Msa0315540:CDS
ATAGTATGGGCAAAACTTCG+TGG 0.564253 2_4:+12007542 Msa0315540:exon
GGACAACCACGTATTGGGAA+TGG 0.564280 2_4:+12011653 Msa0315540:CDS
AGGGTTGAGAAGATTTGTGA+TGG 0.578073 2_4:+12012450 Msa0315540:CDS
GCAAATGGGGAACAATATCA+TGG 0.581870 2_4:-12011733 None:intergenic
GCTATTATCATTGCATTCAG+AGG 0.582162 2_4:+12009698 Msa0315540:CDS
TCAACAGCCCCTAAAACTGC+AGG 0.585625 2_4:-12010603 None:intergenic
GTTGTCCAAATGTCATAACC+TGG 0.593290 2_4:-12011637 None:intergenic
TAATAGTATGGAGGCAAATG+GGG 0.594902 2_4:-12011746 None:intergenic
TATTTAATAAAATTTAACAT+CGG 0.602386 2_4:-12013156 None:intergenic
ATAGCGTTAGGACATTCTAT+GGG 0.614505 2_4:+12010660 Msa0315540:CDS
ATACCAGCACTTTCCGAGAG+AGG 0.625717 2_4:+12011787 Msa0315540:CDS
GGTAAATAGTAATAGTATGG+AGG 0.628678 2_4:-12011755 None:intergenic
TTATGGTGTTGACATGGGAT+CGG 0.634783 2_4:+12012712 Msa0315540:CDS
TAGATGTGGCGACTTGACCA+AGG 0.642125 2_4:+12009321 Msa0315540:CDS
AGCAGCACCAGAGATTCAAG+AGG 0.642364 2_4:+12012785 Msa0315540:CDS
ATTAGTGGAATATGCTTCTG+CGG 0.652645 2_4:+12008750 Msa0315540:CDS
AAGTGCTGGTATGTCTTCTG+TGG 0.655421 2_4:-12011776 None:intergenic
AAAATATATTCCCCATTCGG+TGG 0.657065 2_4:+12007356 Msa0315540:five_prime_UTR
TCACCGGGAAATCTCTGCGG+CGG 0.657670 2_4:+12007324 Msa0315540:five_prime_UTR
TGAAATTCTATACTTAACAT+CGG 0.658609 2_4:-12013072 None:intergenic
GCGTTAGGACATTCTATGGG+CGG 0.665707 2_4:+12010663 Msa0315540:CDS
AAAACACCATTCCCAATACG+TGG 0.686180 2_4:-12011659 None:intergenic
GATTTGTGATGGATCTGGTG+AGG 0.704710 2_4:+12012461 Msa0315540:CDS
TCAGAGGAACTAATGAACAC+AGG 0.707900 2_4:+12009714 Msa0315540:CDS
CATTCTCTACAGGTACATCG+TGG 0.720950 2_4:+12010546 Msa0315540:intron
TTCTCACCGGGAAATCTCTG+CGG 0.725795 2_4:+12007321 Msa0315540:five_prime_UTR
AATGCAATGATAATAGCACG+CGG 0.784321 2_4:-12009692 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTATTTTTTCATTGTT+TGG + chr2_4:12008449-12008468 Msa0315540:intron 10.0%
!!! TAATTATTTTTTCATTGTTT+GGG + chr2_4:12008450-12008469 Msa0315540:intron 10.0%
!! CATAAATAATTTAATAATTG+AGG + chr2_4:12009006-12009025 Msa0315540:intron 10.0%
!! TATGAATTATATACAATAAA+AGG + chr2_4:12009229-12009248 Msa0315540:intron 10.0%
!! ATATAAAAACATAAAAACTA+CGG - chr2_4:12011146-12011165 None:intergenic 10.0%
!!! AAAACAAAATTTTAATGAAT+GGG - chr2_4:12013196-12013215 None:intergenic 10.0%
!! AAAAAGAAATATCTCATATA+TGG - chr2_4:12008506-12008525 None:intergenic 15.0%
!!! AAGATATTTTACATTTAAAC+AGG + chr2_4:12009458-12009477 Msa0315540:intron 15.0%
!!! AGATATTTTACATTTAAACA+GGG + chr2_4:12009459-12009478 Msa0315540:intron 15.0%
!!! TCTTTTTTTCTAAAATATAC+AGG - chr2_4:12009854-12009873 None:intergenic 15.0%
!! AAAAATAAAGACAATACATA+TGG - chr2_4:12010772-12010791 None:intergenic 15.0%
!!! TTTATATTTGTTATTTGTGT+TGG + chr2_4:12011159-12011178 Msa0315540:intron 15.0%
!!! TTATATTTGTTATTTGTGTT+GGG + chr2_4:12011160-12011179 Msa0315540:intron 15.0%
!!! TTAGTTCTTTTAGTTAAATT+TGG + chr2_4:12011314-12011333 Msa0315540:intron 15.0%
!!! CAAAACAAAATTTTAATGAA+TGG - chr2_4:12013197-12013216 None:intergenic 15.0%
!!! CATTCATTAAAATTTTGTTT+TGG + chr2_4:12013195-12013214 Msa0315540:three_prime_UTR 15.0%
!! AGGAAATAATATCAACAATT+AGG + chr2_4:12007814-12007833 Msa0315540:intron 20.0%
!! GGAAATAATATCAACAATTA+GGG + chr2_4:12007815-12007834 Msa0315540:intron 20.0%
!! GTCACATTCTTAAATTTATA+CGG + chr2_4:12007937-12007956 Msa0315540:intron 20.0%
!! TCACATTCTTAAATTTATAC+GGG + chr2_4:12007938-12007957 Msa0315540:intron 20.0%
!!! GATTTGCATTTTAAAATAGT+TGG + chr2_4:12008030-12008049 Msa0315540:intron 20.0%
!! ATCAGAATACCTAATTTAAA+AGG + chr2_4:12008377-12008396 Msa0315540:intron 20.0%
!! TCTGTAAAATAAAGAAGATA+TGG - chr2_4:12008948-12008967 None:intergenic 20.0%
!!! TATCAGTTATTGCATTTTAT+CGG + chr2_4:12009101-12009120 Msa0315540:intron 20.0%
!!! ATAGAATTCATTGTTTCTAT+AGG - chr2_4:12009567-12009586 None:intergenic 20.0%
!! TTATTATTACATCCTATTCT+AGG + chr2_4:12009646-12009665 Msa0315540:intron 20.0%
!!! ATAGATTGTTCTTTTTGAAA+GGG + chr2_4:12010153-12010172 Msa0315540:intron 20.0%
!!! ATGTTTTCTTCATAGTAAAA+TGG - chr2_4:12010271-12010290 None:intergenic 20.0%
!! TGAAATAAATTATCCAGATA+TGG + chr2_4:12010446-12010465 Msa0315540:CDS 20.0%
!! ATGATGATAATATTTCAGAA+TGG - chr2_4:12010529-12010548 None:intergenic 20.0%
!! TATTATTAGAAATTTGAGAG+AGG + chr2_4:12010852-12010871 Msa0315540:intron 20.0%
!! TATATTGTTGAATTTCATGT+AGG - chr2_4:12010966-12010985 None:intergenic 20.0%
!! AGTATGTACAAATTTATAGA+TGG + chr2_4:12010999-12011018 Msa0315540:intron 20.0%
!! ATTTAGTGCATATTACTAAT+AGG + chr2_4:12011205-12011224 Msa0315540:intron 20.0%
!! TTTAGTGCATATTACTAATA+GGG + chr2_4:12011206-12011225 Msa0315540:intron 20.0%
!!! ATTTGGTCTATATATTTTTG+TGG + chr2_4:12011331-12011350 Msa0315540:intron 20.0%
!!! TGATTTTACATTCTTATTAC+AGG + chr2_4:12011592-12011611 Msa0315540:intron 20.0%
!!! TGATTATACTTTGTTTTTTC+TGG + chr2_4:12011899-12011918 Msa0315540:intron 20.0%
!!! AGATCATTATTTTGAATACA+AGG - chr2_4:12011981-12012000 None:intergenic 20.0%
!! TATAACTCTTGGATTATTTA+TGG + chr2_4:12012311-12012330 Msa0315540:intron 20.0%
!!! AAATTGAAAACAAATTTTGC+AGG - chr2_4:12012352-12012371 None:intergenic 20.0%
!! TGAAATTCTATACTTAACAT+CGG - chr2_4:12013075-12013094 None:intergenic 20.0%
!! GAAAGAAAGAAAAAAAAATG+AGG - chr2_4:12013137-12013156 None:intergenic 20.0%
!! AATTGCAGAGTATTATAGTA+TGG + chr2_4:12007528-12007547 Msa0315540:intron 25.0%
!! ATTGCAGAGTATTATAGTAT+GGG + chr2_4:12007529-12007548 Msa0315540:intron 25.0%
! TTTGTCAAACTCTTTCAAAA+GGG - chr2_4:12007795-12007814 None:intergenic 25.0%
! AATACCTAATTTAAAAGGCA+AGG + chr2_4:12008382-12008401 Msa0315540:intron 25.0%
! AAATGCAATAACTGATAGTT+TGG - chr2_4:12009098-12009117 None:intergenic 25.0%
!!! TGACTTAAACTCTAAAATCT+AGG - chr2_4:12009134-12009153 None:intergenic 25.0%
! TACAATAAAAGGACTGAAAT+AGG + chr2_4:12009240-12009259 Msa0315540:intron 25.0%
!! ATTTGACTCAACTTTTTACT+TGG + chr2_4:12009290-12009309 Msa0315540:CDS 25.0%
!!! TTCATTGTTTCTATAGGTAA+AGG - chr2_4:12009561-12009580 None:intergenic 25.0%
!! CATAGATTGTTCTTTTTGAA+AGG + chr2_4:12010152-12010171 Msa0315540:intron 25.0%
!! TTCCTTTTAAACGTGTTTTA+TGG - chr2_4:12010298-12010317 None:intergenic 25.0%
!! TTTTATGTAGTTTACAGAAC+TGG + chr2_4:12010397-12010416 Msa0315540:intron 25.0%
! ACTGGATTGAAGATTTATAT+TGG + chr2_4:12010415-12010434 Msa0315540:CDS 25.0%
! AATATTACAGACACAAAGTA+AGG - chr2_4:12010504-12010523 None:intergenic 25.0%
! ATATTATCATCATTCTCTAC+AGG + chr2_4:12010536-12010555 Msa0315540:intron 25.0%
!!! TAACTATAGTTTAGCTTTCT+TGG + chr2_4:12010721-12010740 Msa0315540:intron 25.0%
!!! TATTGTCTTTATTTTTCCTC+AGG + chr2_4:12010776-12010795 Msa0315540:intron 25.0%
!!! TTTTAGGGAAACATTGTATT+TGG + chr2_4:12010814-12010833 Msa0315540:intron 25.0%
! ATTTCACACAATAGTAGAAA+GGG - chr2_4:12010901-12010920 None:intergenic 25.0%
! AATTTCACACAATAGTAGAA+AGG - chr2_4:12010902-12010921 None:intergenic 25.0%
! AATTCAACAATATAGTGTGT+CGG + chr2_4:12010972-12010991 Msa0315540:intron 25.0%
! ATGTACAAATTTATAGATGG+TGG + chr2_4:12011002-12011021 Msa0315540:intron 25.0%
! AAACTACGGAACAAATTTAT+AGG - chr2_4:12011132-12011151 None:intergenic 25.0%
!!! TCTATATATTTTTGTGGTGT+TGG + chr2_4:12011337-12011356 Msa0315540:intron 25.0%
!!! TTGGATTTTAGTTTTAACCT+TGG - chr2_4:12011383-12011402 None:intergenic 25.0%
!!! CTGATTTGTAGTTTGAATTT+TGG - chr2_4:12011492-12011511 None:intergenic 25.0%
! TAAACAAGAAAAAAATGTCC+AGG + chr2_4:12011619-12011638 Msa0315540:CDS 25.0%
! TGTGGTAAATAGTAATAGTA+TGG - chr2_4:12011761-12011780 None:intergenic 25.0%
! AAAGTATAATCACCATCAAA+GGG - chr2_4:12011891-12011910 None:intergenic 25.0%
!! TATCATTTTGTATTGCTACT+AGG - chr2_4:12011949-12011968 None:intergenic 25.0%
! TGATCTTATCTCTTTCATTA+TGG + chr2_4:12011995-12012014 Msa0315540:intron 25.0%
! AAAACAAACTTTGAATGCAT+AGG - chr2_4:12012029-12012048 None:intergenic 25.0%
!!! TTTTTCAAGAATCTTTGTTG+TGG + chr2_4:12012381-12012400 Msa0315540:intron 25.0%
!!! TTTGAATTATTGCTTTTTGC+AGG + chr2_4:12012651-12012670 Msa0315540:intron 25.0%
! TGTATATATGACTCAATTCT+TGG + chr2_4:12013047-12013066 Msa0315540:three_prime_UTR 25.0%
!!! GTGAAGGTTTTGGATTAAAT+AGG - chr2_4:12007280-12007299 None:intergenic 30.0%
CAGAAAATATATTCCCCATT+CGG + chr2_4:12007353-12007372 Msa0315540:five_prime_UTR 30.0%
AGCAATTAACGTATTCTTGA+CGG + chr2_4:12007477-12007496 Msa0315540:intron 30.0%
AAACGCAAAAAGACATAAAC+AGG - chr2_4:12007584-12007603 None:intergenic 30.0%
GGAATTGTTTCATGTTTGTT+TGG + chr2_4:12007698-12007717 Msa0315540:intron 30.0%
TTGTTTCATGTTTGTTTGGT+TGG + chr2_4:12007702-12007721 Msa0315540:intron 30.0%
!! AATTGAGCTTTATTTGAGAG+TGG + chr2_4:12007728-12007747 Msa0315540:intron 30.0%
!! ATTGAGCTTTATTTGAGAGT+GGG + chr2_4:12007729-12007748 Msa0315540:intron 30.0%
TTTATTTGAGAGTGGGAAAA+TGG + chr2_4:12007736-12007755 Msa0315540:intron 30.0%
TTATTTGAGAGTGGGAAAAT+GGG + chr2_4:12007737-12007756 Msa0315540:intron 30.0%
AAAATGGGGCAAATAGTTAA+AGG + chr2_4:12007752-12007771 Msa0315540:intron 30.0%
CTTTGTCAAACTCTTTCAAA+AGG - chr2_4:12007796-12007815 None:intergenic 30.0%
!! CTTTTGAAAGAGTTTGACAA+AGG + chr2_4:12007794-12007813 Msa0315540:intron 30.0%
TGTATGTGTTAATGCTTCAT+AGG + chr2_4:12007999-12008018 Msa0315540:intron 30.0%
AATAGTTGGACGATTATTGT+TGG + chr2_4:12008044-12008063 Msa0315540:intron 30.0%
ATAGTTGGACGATTATTGTT+GGG + chr2_4:12008045-12008064 Msa0315540:intron 30.0%
ATGCTTGCATTGTATTTGTA+TGG - chr2_4:12008119-12008138 None:intergenic 30.0%
TTGTACTAGATAGTGTATCA+TGG + chr2_4:12008160-12008179 Msa0315540:intron 30.0%
! TGATCCTTGCCTTTTAAATT+AGG - chr2_4:12008389-12008408 None:intergenic 30.0%
AAAGGCAAGGATCAATATTA+TGG + chr2_4:12008395-12008414 Msa0315540:intron 30.0%
AAGGCAAGGATCAATATTAT+GGG + chr2_4:12008396-12008415 Msa0315540:intron 30.0%
! GCAAATGAAAAGTGTATCAT+TGG - chr2_4:12008670-12008689 None:intergenic 30.0%
! AGAAGCATATTCCACTAATA+TGG - chr2_4:12008749-12008768 None:intergenic 30.0%
!!! TTTTATTCTAGTCTTGTCAG+AGG + chr2_4:12008837-12008856 Msa0315540:intron 30.0%
!! TTTATTCTAGTCTTGTCAGA+GGG + chr2_4:12008838-12008857 Msa0315540:intron 30.0%
!! GAAAATTTCAAGTTTCAACC+TGG + chr2_4:12008886-12008905 Msa0315540:intron 30.0%
AAAGAAGATATGGTTTGAAG+TGG - chr2_4:12008938-12008957 None:intergenic 30.0%
!!! GAAGTTTTGTTACATGCATT+CGG + chr2_4:12009180-12009199 Msa0315540:intron 30.0%
! TATCTTTAGACCAGCTATTT+TGG - chr2_4:12009444-12009463 None:intergenic 30.0%
! GGGATTTGAAATTATAGAGT+TGG + chr2_4:12009479-12009498 Msa0315540:intron 30.0%
TAATGGTGACTATGGAATTT+GGG - chr2_4:12009780-12009799 None:intergenic 30.0%
TTAATGGTGACTATGGAATT+TGG - chr2_4:12009781-12009800 None:intergenic 30.0%
TTCCATAGTCACCATTAAAA+TGG + chr2_4:12009783-12009802 Msa0315540:intron 30.0%
!! ATCCATTTTAATGGTGACTA+TGG - chr2_4:12009788-12009807 None:intergenic 30.0%
! CTACAATCGATCCATTTTAA+TGG - chr2_4:12009797-12009816 None:intergenic 30.0%
ATACAAACTTCACATGCATA+AGG - chr2_4:12009892-12009911 None:intergenic 30.0%
TTGTGAATGCAATGTATTAC+TGG + chr2_4:12009975-12009994 Msa0315540:intron 30.0%
GAGCAAATGACTAAGTAATA+CGG + chr2_4:12010010-12010029 Msa0315540:intron 30.0%
!!! GTTTTCAGTTTTTTTGCACA+AGG + chr2_4:12010037-12010056 Msa0315540:intron 30.0%
TAGTAAAATGGTTCTCGTAT+AGG - chr2_4:12010259-12010278 None:intergenic 30.0%
GTCCATAAAACACGTTTAAA+AGG + chr2_4:12010293-12010312 Msa0315540:intron 30.0%
! GTTTACGTCTTTCAGATTTT+TGG + chr2_4:12010322-12010341 Msa0315540:intron 30.0%
! GAAAGAGCAAAGAAGTTTTA+TGG + chr2_4:12010624-12010643 Msa0315540:CDS 30.0%
GATATTCCAATTATAGCGTT+AGG + chr2_4:12010648-12010667 Msa0315540:CDS 30.0%
! GTTTTGTGGACTTGATTTAA+CGG + chr2_4:12010698-12010717 Msa0315540:CDS 30.0%
ATTAGAAATTTGAGAGAGGT+CGG + chr2_4:12010856-12010875 Msa0315540:intron 30.0%
! TGAAATTTTGTCTCACTAAC+TGG + chr2_4:12010915-12010934 Msa0315540:intron 30.0%
!!! TTGGCAAATCTTTTTTGACA+AGG + chr2_4:12011082-12011101 Msa0315540:intron 30.0%
TCAGATAAGTTAAAATGCCA+AGG + chr2_4:12011363-12011382 Msa0315540:intron 30.0%
CAAGATATTCCTATTATACG+AGG + chr2_4:12011552-12011571 Msa0315540:intron 30.0%
ATTATGCATCCTCGTATAAT+AGG - chr2_4:12011564-12011583 None:intergenic 30.0%
TTTGTAACTCGGATTGTATT+TGG - chr2_4:12011710-12011729 None:intergenic 30.0%
TATCATGGTCATTTGTAACT+CGG - chr2_4:12011721-12011740 None:intergenic 30.0%
GGTAAATAGTAATAGTATGG+AGG - chr2_4:12011758-12011777 None:intergenic 30.0%
AAGTATAATCACCATCAAAG+GGG - chr2_4:12011890-12011909 None:intergenic 30.0%
CAAAGTATAATCACCATCAA+AGG - chr2_4:12011892-12011911 None:intergenic 30.0%
AGCAATACAAAATGATAACC+TGG + chr2_4:12011952-12011971 Msa0315540:intron 30.0%
! ATTTTGAATACAAGGAAACC+AGG - chr2_4:12011973-12011992 None:intergenic 30.0%
! ACCATGCAATAATTTTGTGT+GGG + chr2_4:12012267-12012286 Msa0315540:intron 30.0%
TTGTCATGATCTATAACTCT+TGG + chr2_4:12012300-12012319 Msa0315540:intron 30.0%
!! TGGCTTTATAACATTGGATT+AGG + chr2_4:12012414-12012433 Msa0315540:CDS 30.0%
! GTTTTCAGTAAGTCAACATT+CGG - chr2_4:12012530-12012549 None:intergenic 30.0%
TTCAAATTTCAGCAGCTATA+TGG - chr2_4:12012637-12012656 None:intergenic 30.0%
GCCAATTCAATAGACATTAA+CGG - chr2_4:12012885-12012904 None:intergenic 30.0%
TATCTCTTGCTACATAATTG+TGG + chr2_4:12012911-12012930 Msa0315540:three_prime_UTR 30.0%
ATCTCTTGCTACATAATTGT+GGG + chr2_4:12012912-12012931 Msa0315540:three_prime_UTR 30.0%
AAAATATATTCCCCATTCGG+TGG + chr2_4:12007356-12007375 Msa0315540:five_prime_UTR 35.0%
! TGTCTTTTTGCGTTTTCAGA+TGG + chr2_4:12007589-12007608 Msa0315540:CDS 35.0%
!! TAGTCTTGTGTGGGTATAAT+TGG + chr2_4:12007677-12007696 Msa0315540:intron 35.0%
TTTCATGTTTGTTTGGTTGG+TGG + chr2_4:12007705-12007724 Msa0315540:intron 35.0%
TATTTGAGAGTGGGAAAATG+GGG + chr2_4:12007738-12007757 Msa0315540:intron 35.0%
! AATATTCTTTTGCTCGTACG+TGG + chr2_4:12007841-12007860 Msa0315540:intron 35.0%
TTAACACATACACATCACCA+GGG - chr2_4:12007991-12008010 None:intergenic 35.0%
ATTAACACATACACATCACC+AGG - chr2_4:12007992-12008011 None:intergenic 35.0%
TTCCCAGAATTGTCAAATAG+CGG - chr2_4:12008242-12008261 None:intergenic 35.0%
! TGACAATTCTGGGAAAACTT+AGG + chr2_4:12008247-12008266 Msa0315540:intron 35.0%
! ACCATAGTCTTTTACTCTTG+TGG + chr2_4:12008626-12008645 Msa0315540:intron 35.0%
TCCACAAGAGTAAAAGACTA+TGG - chr2_4:12008630-12008649 None:intergenic 35.0%
! TACACTTGCTACCATATTAG+TGG + chr2_4:12008735-12008754 Msa0315540:CDS 35.0%
ATTAGTGGAATATGCTTCTG+CGG + chr2_4:12008750-12008769 Msa0315540:CDS 35.0%
AACCTAAGCAATGCATATAG+AGG + chr2_4:12008790-12008809 Msa0315540:intron 35.0%
TTCCTCTATATGCATTGCTT+AGG - chr2_4:12008795-12008814 None:intergenic 35.0%
CCTTAAAACCTACTTAAGCA+AGG - chr2_4:12008912-12008931 None:intergenic 35.0%
! CCTTGCTTAAGTAGGTTTTA+AGG + chr2_4:12008909-12008928 Msa0315540:intron 35.0%
ATCAATGTTAGCATGTGAGA+AGG - chr2_4:12009034-12009053 None:intergenic 35.0%
! TATTGCATTTTATCGGTGTG+TGG + chr2_4:12009108-12009127 Msa0315540:intron 35.0%
TAAAAGGACTGAAATAGGTC+TGG + chr2_4:12009245-12009264 Msa0315540:intron 35.0%
TGTTCATATTATCAGCACCT+TGG - chr2_4:12009341-12009360 None:intergenic 35.0%
AACTCTTCTTCCAAAATAGC+TGG + chr2_4:12009431-12009450 Msa0315540:intron 35.0%
ATCCTATTCTAGGCATTTGT+TGG + chr2_4:12009656-12009675 Msa0315540:intron 35.0%
AATGCAATGATAATAGCACG+CGG - chr2_4:12009695-12009714 None:intergenic 35.0%
GCTATTATCATTGCATTCAG+AGG + chr2_4:12009698-12009717 Msa0315540:CDS 35.0%
!! ACACAGGTGGATTTTATTTC+TGG + chr2_4:12009730-12009749 Msa0315540:intron 35.0%
TGATCCAAAATTGATCAGCA+GGG + chr2_4:12010072-12010091 Msa0315540:intron 35.0%
! GATCATGTTTGAGATGTTGT+AGG + chr2_4:12010121-12010140 Msa0315540:intron 35.0%
GTTCTCGTATAGGTCAATAT+AGG - chr2_4:12010249-12010268 None:intergenic 35.0%
CAGGACGTATTGTTGTATTA+TGG - chr2_4:12010587-12010606 None:intergenic 35.0%
GAATGTCCTAACGCTATAAT+TGG - chr2_4:12010657-12010676 None:intergenic 35.0%
TATAGCGTTAGGACATTCTA+TGG + chr2_4:12010659-12010678 Msa0315540:CDS 35.0%
ATAGCGTTAGGACATTCTAT+GGG + chr2_4:12010660-12010679 Msa0315540:CDS 35.0%
CATATGGAACAACAAAACCT+GGG - chr2_4:12010756-12010775 None:intergenic 35.0%
ACATATGGAACAACAAAACC+TGG - chr2_4:12010757-12010776 None:intergenic 35.0%
!!! TCTTTATTTTTCCTCAGGCA+GGG + chr2_4:12010781-12010800 Msa0315540:intron 35.0%
!!! CAGGGGCTTTGAATATTTTA+GGG + chr2_4:12010799-12010818 Msa0315540:intron 35.0%
TGGACAAGTAAATTGGAACA+GGG + chr2_4:12011273-12011292 Msa0315540:intron 35.0%
! AAATTGGAACAGGGTTTGTT+TGG + chr2_4:12011282-12011301 Msa0315540:intron 35.0%
AATGTCCAGGTTATGACATT+TGG + chr2_4:12011632-12011651 Msa0315540:CDS 35.0%
TAATAGTATGGAGGCAAATG+GGG - chr2_4:12011749-12011768 None:intergenic 35.0%
GTAATAGTATGGAGGCAAAT+GGG - chr2_4:12011750-12011769 None:intergenic 35.0%
AGTAATAGTATGGAGGCAAA+TGG - chr2_4:12011751-12011770 None:intergenic 35.0%
TACAAGCGCGATAATATAAC+TGG - chr2_4:12011852-12011871 None:intergenic 35.0%
!!! TTGTTTTTACCTGTTGCTCA+TGG + chr2_4:12012042-12012061 Msa0315540:intron 35.0%
CAATGACTGCATGCTATTAT+TGG + chr2_4:12012111-12012130 Msa0315540:intron 35.0%
! TGATGCTTGTTTGTCTGTTT+TGG + chr2_4:12012147-12012166 Msa0315540:intron 35.0%
! GATGCTTGTTTGTCTGTTTT+GGG + chr2_4:12012148-12012167 Msa0315540:intron 35.0%
! ATGCTTGTTTGTCTGTTTTG+GGG + chr2_4:12012149-12012168 Msa0315540:intron 35.0%
CTGATAGAGAAGACACAAAT+AGG - chr2_4:12012231-12012250 None:intergenic 35.0%
! GACCATGCAATAATTTTGTG+TGG + chr2_4:12012266-12012285 Msa0315540:intron 35.0%
ACCCACACAAAATTATTGCA+TGG - chr2_4:12012271-12012290 None:intergenic 35.0%
ACTCTTGGATTATTTATGGC+AGG + chr2_4:12012315-12012334 Msa0315540:intron 35.0%
!! CAGGTATGGCTTTATAACAT+TGG + chr2_4:12012408-12012427 Msa0315540:intron 35.0%
!! ATTAGGTAGTCTTGTGTACA+GGG + chr2_4:12012431-12012450 Msa0315540:CDS 35.0%
AATTTCAGCAGCTATATGGA+GGG - chr2_4:12012633-12012652 None:intergenic 35.0%
AAATTTCAGCAGCTATATGG+AGG - chr2_4:12012634-12012653 None:intergenic 35.0%
ACAGACCACTTAGTCTATTA+TGG + chr2_4:12012695-12012714 Msa0315540:CDS 35.0%
CAACACCATAATAGACTAAG+TGG - chr2_4:12012703-12012722 None:intergenic 35.0%
!! AGTCTATTATGGTGTTGACA+TGG + chr2_4:12012706-12012725 Msa0315540:CDS 35.0%
!! GTCTATTATGGTGTTGACAT+GGG + chr2_4:12012707-12012726 Msa0315540:CDS 35.0%
ATAACGATTCTGCATGTTTG+TGG - chr2_4:12012743-12012762 None:intergenic 35.0%
AATTTGAGAAGGGAACTTGT+AGG - chr2_4:12012833-12012852 None:intergenic 35.0%
CTCTCTACTCAATTTGAGAA+GGG - chr2_4:12012843-12012862 None:intergenic 35.0%
ACTCTCTACTCAATTTGAGA+AGG - chr2_4:12012844-12012863 None:intergenic 35.0%
AGAGTTTGACAATCAGGAAA+AGG + chr2_4:12012859-12012878 Msa0315540:CDS 35.0%
GCCGTTAATGTCTATTGAAT+TGG + chr2_4:12012881-12012900 Msa0315540:exon 35.0%
TTACGGCTGATGAAATTCTT+CGG - chr2_4:12012984-12013003 None:intergenic 35.0%
! TTGAAGAGTCGTGAAGGTTT+TGG - chr2_4:12007290-12007309 None:intergenic 40.0%
AATTGCACGAACACGCAATT+TGG + chr2_4:12007444-12007463 Msa0315540:intron 40.0%
ATTGCACGAACACGCAATTT+GGG + chr2_4:12007445-12007464 Msa0315540:intron 40.0%
ATAGTATGGGCAAAACTTCG+TGG + chr2_4:12007542-12007561 Msa0315540:exon 40.0%
! TTTGCGTTTTCAGATGGTAG+AGG + chr2_4:12007595-12007614 Msa0315540:CDS 40.0%
!! TGTGTGTGTTTAGTCTTGTG+TGG + chr2_4:12007667-12007686 Msa0315540:intron 40.0%
!! GTGTGTGTTTAGTCTTGTGT+GGG + chr2_4:12007668-12007687 Msa0315540:intron 40.0%
GAATTGTCAAATAGCGGCAA+TGG - chr2_4:12008236-12008255 None:intergenic 40.0%
TTGCCGCTATTTGACAATTC+TGG + chr2_4:12008236-12008255 Msa0315540:intron 40.0%
TGCCGCTATTTGACAATTCT+GGG + chr2_4:12008237-12008256 Msa0315540:intron 40.0%
!!! GTTTTTGAGTCCAAGAGCAA+GGG - chr2_4:12008318-12008337 None:intergenic 40.0%
CTCTTGGACTCAAAAACCAT+TGG + chr2_4:12008321-12008340 Msa0315540:intron 40.0%
! GAAATGGGTTTATCTGTGCA+TGG + chr2_4:12008350-12008369 Msa0315540:intron 40.0%
GGACATAGTTCGAAGTTGAA+CGG - chr2_4:12008422-12008441 None:intergenic 40.0%
! CATTGGTGTGAAAGTGTGAA+AGG - chr2_4:12008653-12008672 None:intergenic 40.0%
! GAAGATATGGTTTGAAGTGG+TGG - chr2_4:12008935-12008954 None:intergenic 40.0%
! ACTGATAGTTTGGCTAGTTC+TGG - chr2_4:12009088-12009107 None:intergenic 40.0%
TTGTTACATGCATTCGGTCA+AGG + chr2_4:12009186-12009205 Msa0315540:intron 40.0%
CTCCAACAAATGCCTAGAAT+AGG - chr2_4:12009661-12009680 None:intergenic 40.0%
TCAGAGGAACTAATGAACAC+AGG + chr2_4:12009714-12009733 Msa0315540:CDS 40.0%
GCAATGTATTACTGGCATAG+AGG + chr2_4:12009983-12010002 Msa0315540:intron 40.0%
ATGTATTACTGGCATAGAGG+CGG + chr2_4:12009986-12010005 Msa0315540:intron 40.0%
GTGATCCAAAATTGATCAGC+AGG + chr2_4:12010071-12010090 Msa0315540:intron 40.0%
! AGAACCCTGCTGATCAATTT+TGG - chr2_4:12010079-12010098 None:intergenic 40.0%
! ACAATACGTCCTGCAGTTTT+AGG + chr2_4:12010594-12010613 Msa0315540:CDS 40.0%
! CAATACGTCCTGCAGTTTTA+GGG + chr2_4:12010595-12010614 Msa0315540:CDS 40.0%
!! AATACGTCCTGCAGTTTTAG+GGG + chr2_4:12010596-12010615 Msa0315540:CDS 40.0%
TTTCTTGGTATTGTACACCC+AGG + chr2_4:12010736-12010755 Msa0315540:intron 40.0%
!!! GTCTTTATTTTTCCTCAGGC+AGG + chr2_4:12010780-12010799 Msa0315540:intron 40.0%
!!! CTTTATTTTTCCTCAGGCAG+GGG + chr2_4:12010782-12010801 Msa0315540:intron 40.0%
!!! GCAGGGGCTTTGAATATTTT+AGG + chr2_4:12010798-12010817 Msa0315540:intron 40.0%
! TTTTGTCTCACTAACTGGAG+TGG + chr2_4:12010920-12010939 Msa0315540:intron 40.0%
AGTGGACCCATATTATTTGC+TGG + chr2_4:12010938-12010957 Msa0315540:intron 40.0%
GTGGACCCATATTATTTGCT+GGG + chr2_4:12010939-12010958 Msa0315540:intron 40.0%
! TGGACCCATATTATTTGCTG+GGG + chr2_4:12010940-12010959 Msa0315540:intron 40.0%
TAGGCCCCAGCAAATAATAT+GGG - chr2_4:12010947-12010966 None:intergenic 40.0%
GTCTCAAGCTTAGGTAAAAG+AGG + chr2_4:12011024-12011043 Msa0315540:intron 40.0%
TCAAGCTTAGGTAAAAGAGG+AGG + chr2_4:12011027-12011046 Msa0315540:intron 40.0%
CAAGCTTAGGTAAAAGAGGA+GGG + chr2_4:12011028-12011047 Msa0315540:intron 40.0%
! AAACTTTTCCATAGCTGCCA+GGG - chr2_4:12011064-12011083 None:intergenic 40.0%
ACAAGGATCAACAATGTAGC+TGG + chr2_4:12011099-12011118 Msa0315540:intron 40.0%
AATTTACTTGTCCAGCGGTT+AGG - chr2_4:12011267-12011286 None:intergenic 40.0%
TAACCGCTGGACAAGTAAAT+TGG + chr2_4:12011266-12011285 Msa0315540:intron 40.0%
GTTCCAATTTACTTGTCCAG+CGG - chr2_4:12011272-12011291 None:intergenic 40.0%
CTGGACAAGTAAATTGGAAC+AGG + chr2_4:12011272-12011291 Msa0315540:intron 40.0%
GTTGTCCAAATGTCATAACC+TGG - chr2_4:12011640-12011659 None:intergenic 40.0%
ACATTTGGACAACCACGTAT+TGG + chr2_4:12011647-12011666 Msa0315540:CDS 40.0%
CATTTGGACAACCACGTATT+GGG + chr2_4:12011648-12011667 Msa0315540:CDS 40.0%
AAAACACCATTCCCAATACG+TGG - chr2_4:12011662-12011681 None:intergenic 40.0%
GCAAATGGGGAACAATATCA+TGG - chr2_4:12011736-12011755 None:intergenic 40.0%
GTTATGCAACTTACCTCTCT+CGG - chr2_4:12011803-12011822 None:intergenic 40.0%
! GAATCTTTGTTGTGGATTGC+AGG + chr2_4:12012389-12012408 Msa0315540:intron 40.0%
! TTTGTTGTGGATTGCAGGTA+TGG + chr2_4:12012394-12012413 Msa0315540:intron 40.0%
!! GATTAGGTAGTCTTGTGTAC+AGG + chr2_4:12012430-12012449 Msa0315540:CDS 40.0%
AGGGTTGAGAAGATTTGTGA+TGG + chr2_4:12012450-12012469 Msa0315540:CDS 40.0%
!! GAGAAGATTTGTGATGGATC+TGG + chr2_4:12012456-12012475 Msa0315540:CDS 40.0%
!! TTATGGTGTTGACATGGGAT+CGG + chr2_4:12012712-12012731 Msa0315540:CDS 40.0%
GAAGTTTCCTCTTGAATCTC+TGG - chr2_4:12012795-12012814 None:intergenic 40.0%
GAGTAGAGAGTTTGACAATC+AGG + chr2_4:12012853-12012872 Msa0315540:CDS 40.0%
CTTCACAGTCCTTTCAAATG+CGG + chr2_4:12012958-12012977 Msa0315540:three_prime_UTR 40.0%
AGAATTTCATCAGCCGTAAC+TGG + chr2_4:12012985-12013004 Msa0315540:three_prime_UTR 40.0%
ACGCAATCTTCTTCCAGTTA+CGG - chr2_4:12013001-12013020 None:intergenic 40.0%
TGGAAGAAGATTGCGTGTAT+AGG + chr2_4:12013005-12013024 Msa0315540:three_prime_UTR 40.0%
GAGAAGTTGAAGAGTCGTGA+AGG - chr2_4:12007296-12007315 None:intergenic 45.0%
AACTTCTCTTCCCTTCTCAC+CGG + chr2_4:12007308-12007327 Msa0315540:five_prime_UTR 45.0%
AGAAAAAACGCCACCGAATG+GGG - chr2_4:12007369-12007388 None:intergenic 45.0%
CAGAAAAAACGCCACCGAAT+GGG - chr2_4:12007370-12007389 None:intergenic 45.0%
ACAGAAAAAACGCCACCGAA+TGG - chr2_4:12007371-12007390 None:intergenic 45.0%
! TCGGGCACAATTAGAAGTGT+TGG - chr2_4:12007885-12007904 None:intergenic 45.0%
ATCACGTGTGTCTGTCACAT+CGG - chr2_4:12007904-12007923 None:intergenic 45.0%
CGACATGATTGTGTAGTGTC+TGG + chr2_4:12007964-12007983 Msa0315540:intron 45.0%
AGCGCTGTATTGCGAAAAAC+TGG + chr2_4:12008075-12008094 Msa0315540:intron 45.0%
!!! GGTTTTTGAGTCCAAGAGCA+AGG - chr2_4:12008319-12008338 None:intergenic 45.0%
TGGACTCAAAAACCATTGGC+AGG + chr2_4:12008325-12008344 Msa0315540:intron 45.0%
GGACTCAAAAACCATTGGCA+GGG + chr2_4:12008326-12008345 Msa0315540:intron 45.0%
AAACCATTGGCAGGGTGAAA+TGG + chr2_4:12008334-12008353 Msa0315540:intron 45.0%
AACCATTGGCAGGGTGAAAT+GGG + chr2_4:12008335-12008354 Msa0315540:intron 45.0%
CATTTGCAGAACTCAAGACC+AGG + chr2_4:12008683-12008702 Msa0315540:intron 45.0%
! AGTCTTGTCAGAGGGTTGAT+CGG + chr2_4:12008846-12008865 Msa0315540:intron 45.0%
AAACCTACTTAAGCAAGGCC+AGG - chr2_4:12008907-12008926 None:intergenic 45.0%
TTCGGTCAAGGCAAATCATG+TGG + chr2_4:12009198-12009217 Msa0315540:intron 45.0%
TCGGTCAAGGCAAATCATGT+GGG + chr2_4:12009199-12009218 Msa0315540:intron 45.0%
!! GAAATAGGTCTGGTTCTTGC+AGG + chr2_4:12009255-12009274 Msa0315540:intron 45.0%
! TGATGTCGAGCATTGCTTAC+AGG + chr2_4:12009506-12009525 Msa0315540:CDS 45.0%
GATAATAGCACGCGGATCAT+CGG - chr2_4:12009687-12009706 None:intergenic 45.0%
GAGGAACTAATGAACACAGG+TGG + chr2_4:12009717-12009736 Msa0315540:intron 45.0%
TCCAGATATGGACGATGCAA+TGG + chr2_4:12010458-12010477 Msa0315540:CDS 45.0%
ACCATTGCATCGTCCATATC+TGG - chr2_4:12010462-12010481 None:intergenic 45.0%
CATTCTCTACAGGTACATCG+TGG + chr2_4:12010546-12010565 Msa0315540:intron 45.0%
GTAGGCCCCAGCAAATAATA+TGG - chr2_4:12010948-12010967 None:intergenic 45.0%
! TAGATGGTGGTCTCAAGCTT+AGG + chr2_4:12011015-12011034 Msa0315540:intron 45.0%
GTATTATACCCTGGCAGCTA+TGG + chr2_4:12011053-12011072 Msa0315540:intron 45.0%
! CAAACTTTTCCATAGCTGCC+AGG - chr2_4:12011065-12011084 None:intergenic 45.0%
CTGGCAGCTATGGAAAAGTT+TGG + chr2_4:12011063-12011082 Msa0315540:intron 45.0%
CAAGAAATGAACCTAACCGC+TGG + chr2_4:12011253-12011272 Msa0315540:intron 45.0%
GTGTTCATGAGCTGATTGGT+TGG - chr2_4:12011402-12011421 None:intergenic 45.0%
TCGAGTGTTCATGAGCTGAT+TGG - chr2_4:12011406-12011425 None:intergenic 45.0%
!! AAGTGCTGGTATGTCTTCTG+TGG - chr2_4:12011779-12011798 None:intergenic 45.0%
GAAAGCTGTATCCCCTTTGA+TGG + chr2_4:12011876-12011895 Msa0315540:intron 45.0%
TAGGAACCTCTCACATTGCT+GGG - chr2_4:12012212-12012231 None:intergenic 45.0%
ATAGGAACCTCTCACATTGC+TGG - chr2_4:12012213-12012232 None:intergenic 45.0%
!! GATTTGTGATGGATCTGGTG+AGG + chr2_4:12012461-12012480 Msa0315540:CDS 45.0%
TTGACTAACCTGCTGCAAGA+TGG - chr2_4:12012489-12012508 None:intergenic 45.0%
TGAAAACTTTGCCACTGCAG+TGG + chr2_4:12012543-12012562 Msa0315540:intron 45.0%
ACTAGTAGAATCCACTGCAG+TGG - chr2_4:12012557-12012576 None:intergenic 45.0%
! CTTTTTGCAGGTCAGTGAGT+GGG + chr2_4:12012663-12012682 Msa0315540:intron 45.0%
ATTCTTCGGCCGCATTTGAA+AGG - chr2_4:12012970-12012989 None:intergenic 45.0%
!! ATAAAATAAAATAACAATTA+GGG - chr2_4:12007411-12007430 None:intergenic 5.0%
!! AATAAAATAAAATAACAATT+AGG - chr2_4:12007412-12007431 None:intergenic 5.0%
!! GAAAAAATAATTAAAATAAA+AGG - chr2_4:12008443-12008462 None:intergenic 5.0%
!! ATTATTAAATTATTTATGTT+AGG - chr2_4:12009004-12009023 None:intergenic 5.0%
!! ATAAATAATTTAATAATTGA+GGG + chr2_4:12009007-12009026 Msa0315540:intron 5.0%
!! TATTTAATAAAATTTAACAT+CGG - chr2_4:12013159-12013178 None:intergenic 5.0%
ACTTCTCTTCCCTTCTCACC+GGG + chr2_4:12007309-12007328 Msa0315540:five_prime_UTR 50.0%
CAGAGATTTCCCGGTGAGAA+GGG - chr2_4:12007321-12007340 None:intergenic 50.0%
TTCTCACCGGGAAATCTCTG+CGG + chr2_4:12007321-12007340 Msa0315540:five_prime_UTR 50.0%
!! GTTGGTGCTACAGAGATGCT+AGG - chr2_4:12007867-12007886 None:intergenic 50.0%
TCACGTGTGTCTGTCACATC+GGG - chr2_4:12007903-12007922 None:intergenic 50.0%
ATTGTGTAGTGTCTGGTCCC+TGG + chr2_4:12007971-12007990 Msa0315540:intron 50.0%
TACAGCTGTTCCCTTGCTCT+TGG + chr2_4:12008305-12008324 Msa0315540:intron 50.0%
AACCCATTTCACCCTGCCAA+TGG - chr2_4:12008340-12008359 None:intergenic 50.0%
! GTCTTGTCAGAGGGTTGATC+GGG + chr2_4:12008847-12008866 Msa0315540:intron 50.0%
!! CAACCTGGCCTTGCTTAAGT+AGG + chr2_4:12008901-12008920 Msa0315540:intron 50.0%
! ACTTGGACGTGCTCTAGATG+TGG + chr2_4:12009307-12009326 Msa0315540:CDS 50.0%
TAGATGTGGCGACTTGACCA+AGG + chr2_4:12009321-12009340 Msa0315540:CDS 50.0%
! GTCGAGCATTGCTTACAGGT+CGG + chr2_4:12009510-12009529 Msa0315540:intron 50.0%
TCAACAGCCCCTAAAACTGC+AGG - chr2_4:12010606-12010625 None:intergenic 50.0%
GCGTTAGGACATTCTATGGG+CGG + chr2_4:12010663-12010682 Msa0315540:CDS 50.0%
ACATTCTATGGGCGGAGCAA+TGG + chr2_4:12010671-12010690 Msa0315540:CDS 50.0%
ATATTCAAAGCCCCTGCCTG+AGG - chr2_4:12010795-12010814 None:intergenic 50.0%
AGGAGGGCTGTATTATACCC+TGG + chr2_4:12011044-12011063 Msa0315540:intron 50.0%
GGACAACCACGTATTGGGAA+TGG + chr2_4:12011653-12011672 Msa0315540:CDS 50.0%
ATACCAGCACTTTCCGAGAG+AGG + chr2_4:12011787-12011806 Msa0315540:CDS 50.0%
! TTACCTCTCTCGGAAAGTGC+TGG - chr2_4:12011793-12011812 None:intergenic 50.0%
AAGAGTGAGCCATGAGCAAC+AGG - chr2_4:12012054-12012073 None:intergenic 50.0%
TCAGCAGCTATATGGAGGGT+TGG - chr2_4:12012629-12012648 None:intergenic 50.0%
! GCTTTTTGCAGGTCAGTGAG+TGG + chr2_4:12012662-12012681 Msa0315540:intron 50.0%
AGCAGCACCAGAGATTCAAG+AGG + chr2_4:12012785-12012804 Msa0315540:CDS 50.0%
GCAGAGATTTCCCGGTGAGA+AGG - chr2_4:12007322-12007341 None:intergenic 55.0%
CGCAAGATGACTCGTATGCC+TGG - chr2_4:12008704-12008723 None:intergenic 55.0%
GCTATGAGCTGGTCAGGATG+AGG - chr2_4:12009066-12009085 None:intergenic 55.0%
! GTTCTGGCTATGAGCTGGTC+AGG - chr2_4:12009072-12009091 None:intergenic 55.0%
!! GGCTAGTTCTGGCTATGAGC+TGG - chr2_4:12009077-12009096 None:intergenic 55.0%
! GGAGCAATGGCTGCGTTTTG+TGG + chr2_4:12010684-12010703 Msa0315540:CDS 55.0%
TTGCTGGGTGTGCAGAGAGT+TGG - chr2_4:12012197-12012216 None:intergenic 55.0%
TGCACACCCAGCAATGTGAG+AGG + chr2_4:12012203-12012222 Msa0315540:intron 55.0%
GTGAGGATCCATCTTGCAGC+AGG + chr2_4:12012478-12012497 Msa0315540:CDS 55.0%
TCACCGGGAAATCTCTGCGG+CGG + chr2_4:12007324-12007343 Msa0315540:five_prime_UTR 60.0%
TCGCCGCCGCAGAGATTTCC+CGG - chr2_4:12007330-12007349 None:intergenic 65.0%
GGAAATCTCTGCGGCGGCGA+CGG + chr2_4:12007330-12007349 Msa0315540:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 12007265 12013248 12007265 ID=Msa0315540;Name=Msa0315540
chr2_4 mRNA 12007265 12013248 12007265 ID=Msa0315540-mRNA-1;Parent=Msa0315540;Name=Msa0315540-mRNA-1;_AED=0.07;_eAED=0.07;_QI=141|1|1|1|0.9|0.81|11|350|358
chr2_4 exon 12007265 12007394 12007265 ID=Msa0315540-mRNA-1:exon:4590;Parent=Msa0315540-mRNA-1
chr2_4 exon 12007536 12007616 12007536 ID=Msa0315540-mRNA-1:exon:4591;Parent=Msa0315540-mRNA-1
chr2_4 exon 12008692 12008771 12008692 ID=Msa0315540-mRNA-1:exon:4592;Parent=Msa0315540-mRNA-1
chr2_4 exon 12009277 12009342 12009277 ID=Msa0315540-mRNA-1:exon:4593;Parent=Msa0315540-mRNA-1
chr2_4 exon 12009480 12009527 12009480 ID=Msa0315540-mRNA-1:exon:4594;Parent=Msa0315540-mRNA-1
chr2_4 exon 12009668 12009735 12009668 ID=Msa0315540-mRNA-1:exon:4595;Parent=Msa0315540-mRNA-1
chr2_4 exon 12010407 12010479 12010407 ID=Msa0315540-mRNA-1:exon:4596;Parent=Msa0315540-mRNA-1
chr2_4 exon 12010558 12010719 12010558 ID=Msa0315540-mRNA-1:exon:4597;Parent=Msa0315540-mRNA-1
chr2_4 exon 12011614 12011808 12011614 ID=Msa0315540-mRNA-1:exon:4598;Parent=Msa0315540-mRNA-1
chr2_4 exon 12012411 12012499 12012411 ID=Msa0315540-mRNA-1:exon:4599;Parent=Msa0315540-mRNA-1
chr2_4 exon 12012673 12013248 12012673 ID=Msa0315540-mRNA-1:exon:4600;Parent=Msa0315540-mRNA-1
chr2_4 five_prime_UTR 12007265 12007394 12007265 ID=Msa0315540-mRNA-1:five_prime_utr;Parent=Msa0315540-mRNA-1
chr2_4 five_prime_UTR 12007536 12007546 12007536 ID=Msa0315540-mRNA-1:five_prime_utr;Parent=Msa0315540-mRNA-1
chr2_4 CDS 12007547 12007616 12007547 ID=Msa0315540-mRNA-1:cds;Parent=Msa0315540-mRNA-1
chr2_4 CDS 12008692 12008771 12008692 ID=Msa0315540-mRNA-1:cds;Parent=Msa0315540-mRNA-1
chr2_4 CDS 12009277 12009342 12009277 ID=Msa0315540-mRNA-1:cds;Parent=Msa0315540-mRNA-1
chr2_4 CDS 12009480 12009527 12009480 ID=Msa0315540-mRNA-1:cds;Parent=Msa0315540-mRNA-1
chr2_4 CDS 12009668 12009735 12009668 ID=Msa0315540-mRNA-1:cds;Parent=Msa0315540-mRNA-1
chr2_4 CDS 12010407 12010479 12010407 ID=Msa0315540-mRNA-1:cds;Parent=Msa0315540-mRNA-1
chr2_4 CDS 12010558 12010719 12010558 ID=Msa0315540-mRNA-1:cds;Parent=Msa0315540-mRNA-1
chr2_4 CDS 12011614 12011808 12011614 ID=Msa0315540-mRNA-1:cds;Parent=Msa0315540-mRNA-1
chr2_4 CDS 12012411 12012499 12012411 ID=Msa0315540-mRNA-1:cds;Parent=Msa0315540-mRNA-1
chr2_4 CDS 12012673 12012898 12012673 ID=Msa0315540-mRNA-1:cds;Parent=Msa0315540-mRNA-1
chr2_4 three_prime_UTR 12012899 12013248 12012899 ID=Msa0315540-mRNA-1:three_prime_utr;Parent=Msa0315540-mRNA-1
Gene Sequence

>Msa0315540

ATGGGCAAAACTTCGTGGTGCTTGATTTTTGTTACCTGTTTATGTCTTTTTGCGTTTTCAGATGGTAGAGAACTCAAGACCAGGCATACGAGTCATCTTGCGCAGTATAATCATACACTTGCTACCATATTAGTGGAATATGCTTCTGCGGTATACTTGTCAGATTTGACTCAACTTTTTACTTGGACGTGCTCTAGATGTGGCGACTTGACCAAGGGATTTGAAATTATAGAGTTGGTTGTTGATGTCGAGCATTGCTTACAGGCATTTGTTGGAGTAGCCGATGATCCGCGTGCTATTATCATTGCATTCAGAGGAACTAATGAACACAGTTTACAGAACTGGATTGAAGATTTATATTGGAAACAGCATGAAATAAATTATCCAGATATGGACGATGCAATGGTACATCGTGGTTTTTATACTGCATACCATAATACAACAATACGTCCTGCAGTTTTAGGGGCTGTTGAAAGAGCAAAGAAGTTTTATGGAGATATTCCAATTATAGCGTTAGGACATTCTATGGGCGGAGCAATGGCTGCGTTTTGTGGACTTGATTTAACGGTAAATAAACAAGAAAAAAATGTCCAGGTTATGACATTTGGACAACCACGTATTGGGAATGGTGTTTTTGTATCTCTCTACAGCAAACTAGTTCCAAATACAATCCGAGTTACAAATGACCATGATATTGTTCCCCATTTGCCTCCATACTATTACTATTTACCACAGAAGACATACCAGCACTTTCCGAGAGAGGTATGGCTTTATAACATTGGATTAGGTAGTCTTGTGTACAGGGTTGAGAAGATTTGTGATGGATCTGGTGAGGATCCATCTTGCAGCAGGTCAGTGAGTGGGAATAGCATCACAGACCACTTAGTCTATTATGGTGTTGACATGGGATCGGATGATCCACAAACATGCAGAATCGTTATGAATTCTGACGTTCTGAGAACTAGCAGCACCAGAGATTCAAGAGGAAACTTCATCTTATCTAGAGATCCTACAAGTTCCCTTCTCAAATTGAGTAGAGAGTTTGACAATCAGGAAAAGGCCGTTAATGTCTATTGA

Protein sequence

>Msa0315540

MGKTSWCLIFVTCLCLFAFSDGRELKTRHTSHLAQYNHTLATILVEYASAVYLSDLTQLFTWTCSRCGDLTKGFEIIELVVDVEHCLQAFVGVADDPRAIIIAFRGTNEHSLQNWIEDLYWKQHEINYPDMDDAMVHRGFYTAYHNTTIRPAVLGAVERAKKFYGDIPIIALGHSMGGAMAAFCGLDLTVNKQEKNVQVMTFGQPRIGNGVFVSLYSKLVPNTIRVTNDHDIVPHLPPYYYYLPQKTYQHFPREVWLYNIGLGSLVYRVEKICDGSGEDPSCSRSVSGNSITDHLVYYGVDMGSDDPQTCRIVMNSDVLRTSSTRDSRGNFILSRDPTSSLLKLSREFDNQEKAVNVY*