AlfalfaGEDB | Msa0374520

M. sativa cultivar zhongmu-4 / Msa0374520

KEGG: K21398
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0010035 GO:0010038 GO:0010044 GO:0015075 GO:0015083 GO:0015318 GO:0015690 GO:0016020 GO:0022857 GO:0030001 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0072512 GO:0098660 GO:1902602
PFAM: PF01566.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374520	XP_003602055.1	98.708	542	7	0	1	542	1	542	0.0	1084

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374520	sp\|Q8H4H5\|NRAM5_ORYSJ	70.825	521	138	4	29	538	21	538	0.0	734

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374520	G7LGK5	98.708	542	7	0	1	542	1	542	0.0	1084

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0269720	Msa0374520	0.819640	1.044455e-52	-8.615850e-47
Msa0291750	Msa0374520	0.804378	2.223483e-49	-8.615850e-47
Msa0374520	Msa0374650	0.963448	4.252286e-122	-8.615850e-47
Msa0374520	Msa0423680	0.841941	3.500081e-58	-8.615850e-47
Msa0374520	Msa0470370	0.854611	1.097100e-61	-8.615850e-47
Msa0374520	Msa0525450	0.935012	1.653568e-96	-8.615850e-47
Msa0374520	Msa0543740	0.813162	2.942600e-51	-8.615850e-47
Msa0374520	Msa0587920	0.812339	4.455559e-51	-8.615850e-47
Msa0374520	Msa0735280	0.805609	1.228835e-49	-8.615850e-47
Msa0374520	Msa0854840	0.802127	6.501927e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374520	MtrunA17_Chr3g0124971	98.708	542	7	0	1	542	1	542	0.0	1084
Msa0374520	MtrunA17_Chr3g0124991	81.800	511	89	1	28	538	25	531	0.0	862
Msa0374520	MtrunA17_Chr2g0333811	58.674	513	202	3	31	538	30	537	0.0	616
Msa0374520	MtrunA17_Chr3g0134491	41.632	478	243	9	18	487	55	504	3.32e-110	338
Msa0374520	MtrunA17_Chr4g0053701	39.804	510	266	10	10	506	29	510	5.89e-107	330
Msa0374520	MtrunA17_Chr5g0401611	40.041	487	265	9	10	487	22	490	4.22e-106	327
Msa0374520	MtrunA17_Chr8g0347551	40.132	456	247	8	41	487	83	521	1.48e-98	309
Msa0374520	MtrunA17_Chr7g0264231	27.700	426	250	10	43	448	31	418	6.72e-36	143
Msa0374520	MtrunA17_Chr2g0309271	27.882	373	245	10	89	454	6	361	3.58e-34	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0374520	AT1G15960.1	57.649	536	204	4	5	538	4	518	0.0	617
Msa0374520	AT1G80830.1	59.960	502	198	2	18	516	18	519	0.0	611
Msa0374520	AT1G80830.2	59.960	502	198	2	18	516	18	519	0.0	611
Msa0374520	AT1G47240.1	40.323	496	263	10	2	487	31	503	1.04e-110	340
Msa0374520	AT5G67330.1	42.731	454	242	7	38	483	46	489	7.50e-109	335
Msa0374520	AT2G23150.1	42.237	438	225	7	23	452	47	464	1.17e-105	326
Msa0374520	AT4G18790.1	39.917	481	255	11	24	487	42	505	6.24e-98	307
Msa0374520	AT5G03280.1	28.297	417	266	9	50	454	24	419	2.29e-38	151

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Find 142 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACCTGGTACTAAGCG+TGG	0.631107	3_1:-73971405	Msa0374520:CDS
AAATAACCTGCATGATAAAC+TGG	0.343150	3_1:+73970883	None:intergenic
AACAGAACCCCTCCCCATAC+AGG	0.439502	3_1:+73973496	None:intergenic
AACCCACAAAAGCAGTAATG+AGG	0.591854	3_1:+73970281	None:intergenic
AAGAAGTTCTTGGCATATGT+AGG	0.614916	3_1:-73975396	Msa0374520:CDS
AAGACTCATTATCATTGCAT+CGG	0.550734	3_1:-73970655	Msa0374520:intron
AAGCAGTATTTCACAAACCA+TGG	0.552975	3_1:+73974335	None:intergenic
AAGGAAAGAAGCAGAGTTAA+GGG	0.387403	3_1:+73971110	None:intergenic
AAGGTGGCAAATGTGTTCAT+CGG	0.535021	3_1:-73970235	Msa0374520:CDS
AATATATATACGGCATGATA+AGG	0.422603	3_1:+73971615	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGCTTATAATAGTGTTCAG+AGG	-	chr3_1:73970525-73970544	Msa0374520:CDS	30.0%
TGCTTATAATAGTGTTCAGA+GGG	-	chr3_1:73970526-73970545	Msa0374520:CDS	30.0%
TTGTTGTGGATCATACTTAT+TGG	-	chr3_1:73970847-73970866	Msa0374520:intron	30.0%
ACAAGAACAAAAGCTCAAAT+AGG	-	chr3_1:73971227-73971246	Msa0374520:CDS	30.0%
CAGCTTTACAAATTTCTGAA+AGG	+	chr3_1:73971335-73971354	None:intergenic	30.0%
GTACATGTAAATAAATGGCA+AGG	+	chr3_1:73971587-73971606	None:intergenic	30.0%
CTCACATCAAGGAAAAATAT+TGG	-	chr3_1:73971898-73971917	Msa0374520:intron	30.0%
GAATAGTATGTTTAGTGCAA+AGG	+	chr3_1:73972173-73972192	None:intergenic	30.0%
AAAAGCTAGAAACCATGAAA+AGG	+	chr3_1:73972347-73972366	None:intergenic	30.0%
TATTGTCTTTAATGTCCACT+TGG	-	chr3_1:73973228-73973247	Msa0374520:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	73970015	73975702	73970015	ID=Msa0374520;Name=Msa0374520
chr3_1	mRNA	73970015	73975702	73970015	ID=Msa0374520-mRNA-1;Parent=Msa0374520;Name=Msa0374520-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0\|0\|1\|1\|1\|13\|0\|542
chr3_1	exon	73975592	73975702	73975592	ID=Msa0374520-mRNA-1:exon:16971;Parent=Msa0374520-mRNA-1
chr3_1	exon	73975352	73975430	73975352	ID=Msa0374520-mRNA-1:exon:16970;Parent=Msa0374520-mRNA-1
chr3_1	exon	73974994	73975034	73974994	ID=Msa0374520-mRNA-1:exon:16969;Parent=Msa0374520-mRNA-1
chr3_1	exon	73974792	73974870	73974792	ID=Msa0374520-mRNA-1:exon:16968;Parent=Msa0374520-mRNA-1
chr3_1	exon	73974288	73974392	73974288	ID=Msa0374520-mRNA-1:exon:16967;Parent=Msa0374520-mRNA-1
chr3_1	exon	73973450	73973559	73973450	ID=Msa0374520-mRNA-1:exon:16966;Parent=Msa0374520-mRNA-1
chr3_1	exon	73971626	73971807	73971626	ID=Msa0374520-mRNA-1:exon:16965;Parent=Msa0374520-mRNA-1
chr3_1	exon	73971398	73971467	73971398	ID=Msa0374520-mRNA-1:exon:16964;Parent=Msa0374520-mRNA-1
chr3_1	exon	73971104	73971277	73971104	ID=Msa0374520-mRNA-1:exon:16963;Parent=Msa0374520-mRNA-1
chr3_1	exon	73970890	73970994	73970890	ID=Msa0374520-mRNA-1:exon:16962;Parent=Msa0374520-mRNA-1
chr3_1	exon	73970656	73970787	73970656	ID=Msa0374520-mRNA-1:exon:16961;Parent=Msa0374520-mRNA-1
chr3_1	exon	73970463	73970558	73970463	ID=Msa0374520-mRNA-1:exon:16960;Parent=Msa0374520-mRNA-1
chr3_1	exon	73970015	73970359	73970015	ID=Msa0374520-mRNA-1:exon:16959;Parent=Msa0374520-mRNA-1
chr3_1	CDS	73975592	73975702	73975592	ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1	CDS	73975352	73975430	73975352	ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1	CDS	73974994	73975034	73974994	ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1	CDS	73974792	73974870	73974792	ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1	CDS	73974288	73974392	73974288	ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1	CDS	73973450	73973559	73973450	ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1	CDS	73971626	73971807	73971626	ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1	CDS	73971398	73971467	73971398	ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1	CDS	73971104	73971277	73971104	ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1	CDS	73970890	73970994	73970890	ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1	CDS	73970656	73970787	73970656	ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1	CDS	73970463	73970558	73970463	ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1	CDS	73970015	73970359	73970015	ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1

Gene Sequence

>Msa0374520

ATGGCACATCAAGAAGTGAATAATGGTAGCAACAACCGTATAGTAGCCGTTAATGTGACCCCTTCTGGCACACCTCCTTATAACCATGATGATTCCTCAAAGCAAGATCAGAAACCAGGATGGAAGAAGTTCTTGGCATATGTAGGTCCTGGTTTTCTTGTCTCCTTGGCCTACCTTGATCCCGGAAATATGGAAACTGATTTGCAAGCTGGAGCTAACCACGGATATGAGTTGTTGTGGATCATACTTATTGGACTCATATTTGCCTGCATAATTCAATCATTGGCTGCAAATCTTGGAGTGTGCACTGGAAAGCACCTTTCAGAAATTTGTAAAGCTGAGTACCCATGGTTTGTGAAATACTGCTTATGGATATTAGCAGAACTTGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGGACGGCCTTTGCACTAAACATACTATTCCACATCCCTGTATGGGGAGGGGTTCTGTTGACTGGGTGCAGCACTCTCTTGTTTTTGGGTCTACAAAGATTTGGGGTGAGGAAGTTGGAACTGCTGATTTCAATTCTAGTATTTGTAATGGCTGCATGTTTCTTTGGTGAATTGAGCTATGTAAAACCCCCTGCTAAAGGAGTAATTGAGGGAATGTTTGTTCCCAAACTCAGCGGAAATGGTGCTGTAGGCGATGCTATTGCCCTTTTGGGTGCCCTTATCATGCCGCACAATCTTTTCCTCCATTCTGCTCTAGTGCTATCTCGAAAAATACCTGGTACTAAGCGTGGCATCAATGATGCGTGCAGATACTTTCTCATTGAGAGTGGTTTCGCTCTGTTCGTTGCATTTCTAATCAATGTTGCAATGATTTCTGTGACTGGCACTGTTTGCAAAGCTGATGATATTTCTGGAGAGAATGCTGATCGTTGCAACGATATTACCCTTAACTCTGCTTCTTTCCTTCTCCAGAATGTGTTGGGACGTTCAAGCTCAACTATTTATGCCATAGCATTGCTAGCCTCAGGACAAAGTTCTGCCATCACTGGAACCTATGCAGGCCAGTTTATCATGCAGGGTTTCTTGGACTTAAAGATGAAAAAATGGATAAGGAACTTGGTGACTAGGATTGTTGCCATAGCACCAAGTCTAGTTGTATCTATCATTGGTGGTTCTTCTGGAGCTGGAAGACTCATTATCATTGCATCGATGATACTTTCTTTTGAGCTTCCATTCGCTTTAATTCCACTCCTTAAGTTTAGCAGCAGCAGGACCAAGATGGGACCTCACAAGAATTCTATCATTATCATTATCATCTCATGGATACTGGGTTTGGGAATCATTGGAATCAATGTGTACTACCTCATTACTGCTTTTGTGGGTTGGATAATTCATAACAGTCTACCAAAGGTGGCAAATGTGTTCATCGGGCTCATTGTGTTTCCTCTAATGGCACTGTATATCGTCTCAGTTATCTATCTAACATTCAGAAAAGACACTGTTGTAACGTTTGTGGAGGTTAAGGATGACCCAGCAATGCAAACCCACGTGGAAAAGGGGTTCGTAAACGATGGTCAGTTAGAGTTGAGTTATACTCCTTATAGAGAAGATTTAGCTGATATCACTCGACCAGAGGGACTTAGGTTGTGA

Protein sequence

>Msa0374520

MAHQEVNNGSNNRIVAVNVTPSGTPPYNHDDSSKQDQKPGWKKFLAYVGPGFLVSLAYLDPGNMETDLQAGANHGYELLWIILIGLIFACIIQSLAANLGVCTGKHLSEICKAEYPWFVKYCLWILAELAVIAADIPEVIGTAFALNILFHIPVWGGVLLTGCSTLLFLGLQRFGVRKLELLISILVFVMAACFFGELSYVKPPAKGVIEGMFVPKLSGNGAVGDAIALLGALIMPHNLFLHSALVLSRKIPGTKRGINDACRYFLIESGFALFVAFLINVAMISVTGTVCKADDISGENADRCNDITLNSASFLLQNVLGRSSSTIYAIALLASGQSSAITGTYAGQFIMQGFLDLKMKKWIRNLVTRIVAIAPSLVVSIIGGSSGAGRLIIIASMILSFELPFALIPLLKFSSSRTKMGPHKNSIIIIIISWILGLGIIGINVYYLITAFVGWIIHNSLPKVANVFIGLIVFPLMALYIVSVIYLTFRKDTVVTFVEVKDDPAMQTHVEKGFVNDGQLELSYTPYREDLADITRPEGLRL*