AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0374520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374520 MtrunA17_Chr3g0124971 98.708 542 7 0 1 542 1 542 0.0 1084
Msa0374520 MtrunA17_Chr3g0124991 81.800 511 89 1 28 538 25 531 0.0 862
Msa0374520 MtrunA17_Chr2g0333811 58.674 513 202 3 31 538 30 537 0.0 616
Msa0374520 MtrunA17_Chr3g0134491 41.632 478 243 9 18 487 55 504 3.32e-110 338
Msa0374520 MtrunA17_Chr4g0053701 39.804 510 266 10 10 506 29 510 5.89e-107 330
Msa0374520 MtrunA17_Chr5g0401611 40.041 487 265 9 10 487 22 490 4.22e-106 327
Msa0374520 MtrunA17_Chr8g0347551 40.132 456 247 8 41 487 83 521 1.48e-98 309
Msa0374520 MtrunA17_Chr7g0264231 27.700 426 250 10 43 448 31 418 6.72e-36 143
Msa0374520 MtrunA17_Chr2g0309271 27.882 373 245 10 89 454 6 361 3.58e-34 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374520 AT1G15960.1 57.649 536 204 4 5 538 4 518 0.0 617
Msa0374520 AT1G80830.1 59.960 502 198 2 18 516 18 519 0.0 611
Msa0374520 AT1G80830.2 59.960 502 198 2 18 516 18 519 0.0 611
Msa0374520 AT1G47240.1 40.323 496 263 10 2 487 31 503 1.04e-110 340
Msa0374520 AT5G67330.1 42.731 454 242 7 38 483 46 489 7.50e-109 335
Msa0374520 AT2G23150.1 42.237 438 225 7 23 452 47 464 1.17e-105 326
Msa0374520 AT4G18790.1 39.917 481 255 11 24 487 42 505 6.24e-98 307
Msa0374520 AT5G03280.1 28.297 417 266 9 50 454 24 419 2.29e-38 151

Find 142 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACGTGGGTTTGCATTGC+TGG 0.156547 3_1:+73970112 None:intergenic
TCTATCATTGGTGGTTCTTC+TGG 0.194282 3_1:-73970684 Msa0374520:CDS
ATAGAGAAAATTACTATTTC+CGG 0.208449 3_1:+73975338 None:intergenic
GTTGTTGCTATAGGGTTTCT+TGG 0.220130 3_1:-73970778 Msa0374520:intron
TGCAAAGCTGATGATATTTC+TGG 0.243526 3_1:-73971162 Msa0374520:CDS
AGGCGATGCTATTGCCCTTT+TGG 0.259932 3_1:-73971642 Msa0374520:CDS
TTGTTGTGGATCATACTTAT+TGG 0.261247 3_1:-73974848 Msa0374520:CDS
AGCACCATTTCCGCTGAGTT+TGG 0.266992 3_1:+73971667 None:intergenic
CATTATCATCTCATGGATAC+TGG 0.284916 3_1:-73970335 Msa0374520:CDS
GCTCATTGTGTTTCCTCTAA+TGG 0.296660 3_1:-73970212 Msa0374520:CDS
GCCGTTAATGTGACCCCTTC+TGG 0.300443 3_1:-73975635 Msa0374520:CDS
GGTTTGTGAAATACTGCTTA+TGG 0.301334 3_1:-73974331 Msa0374520:CDS
CTCTGCTTCTTTCCTTCTCC+AGG 0.303394 3_1:-73971103 Msa0374520:intron
GAGGAATCATCATGGTTATA+AGG 0.307736 3_1:+73975605 None:intergenic
CATCTCATGGATACTGGGTT+TGG 0.307770 3_1:-73970329 Msa0374520:CDS
TGGGGAGGGGTTCTGTTGAC+TGG 0.325047 3_1:-73973490 Msa0374520:CDS
GTAATGGCTGCATGTTTCTT+TGG 0.335836 3_1:-73971746 Msa0374520:CDS
CAATCATTGGCTGCAAATCT+TGG 0.340580 3_1:-73974803 Msa0374520:CDS
AAATAACCTGCATGATAAAC+TGG 0.343150 3_1:+73970883 None:intergenic
TCAGCTAAATCTTCTCTATA+AGG 0.348732 3_1:+73970046 None:intergenic
TGCCTGCATAATTCAATCAT+TGG 0.362553 3_1:-73974816 Msa0374520:CDS
CCCTCAATTACTCCTTTAGC+AGG 0.370812 3_1:+73971701 None:intergenic
GAAGGAAAGAAGCAGAGTTA+AGG 0.373155 3_1:+73971109 None:intergenic
TAGAGAAAATTACTATTTCC+GGG 0.385584 3_1:+73975339 None:intergenic
AAGGAAAGAAGCAGAGTTAA+GGG 0.387403 3_1:+73971110 None:intergenic
GTTCCCAAACTCAGCGGAAA+TGG 0.392437 3_1:-73971671 Msa0374520:CDS
TCACATTAACGGCTACTATA+CGG 0.394700 3_1:+73975645 None:intergenic
CCACGTGGGTTTGCATTGCT+GGG 0.394721 3_1:+73970113 None:intergenic
ATGAACACATTTGCCACCTT+TGG 0.395316 3_1:+73970238 None:intergenic
TACTATTCCACATCCCTGTA+TGG 0.395695 3_1:-73973510 Msa0374520:CDS
ACGATATACAGTGCCATTAG+AGG 0.404675 3_1:+73970199 None:intergenic
AATGCAAACCCACGTGGAAA+AGG 0.405954 3_1:-73970107 Msa0374520:CDS
GCACCATTTCCGCTGAGTTT+GGG 0.410514 3_1:+73971668 None:intergenic
ATGCAAACCCACGTGGAAAA+GGG 0.414972 3_1:-73970106 Msa0374520:CDS
AATATATATACGGCATGATA+AGG 0.422603 3_1:+73971615 None:intergenic
TTCAATTCTAGTATTTGTAA+TGG 0.429820 3_1:-73971762 Msa0374520:CDS
GCACATCAAGAAGTGAATAA+TGG 0.430235 3_1:-73975677 Msa0374520:CDS
ATCTCATGGATACTGGGTTT+GGG 0.430375 3_1:-73970328 Msa0374520:CDS
TTCTTGGCATATGTAGGTCC+TGG 0.432693 3_1:-73975390 Msa0374520:CDS
CTCAATTACTCCTTTAGCAG+GGG 0.433628 3_1:+73971703 None:intergenic
ATACTGGGTTTGGGAATCAT+TGG 0.437838 3_1:-73970319 Msa0374520:CDS
AACAGAACCCCTCCCCATAC+AGG 0.439502 3_1:+73973496 None:intergenic
AATTACTATTTCCGGGATCA+AGG 0.443260 3_1:+73975346 None:intergenic
TCCTGCTGCTGCTAAACTTA+AGG 0.444508 3_1:+73970495 None:intergenic
TAGTACCTGATCTTGCTTTG+AGG 0.445138 3_1:+73975586 None:intergenic
GCCAAGAACTTCTTCCATCC+TGG 0.450214 3_1:+73975405 None:intergenic
ATTGGTGGTTCTTCTGGAGC+TGG 0.453884 3_1:-73970678 Msa0374520:CDS
TGTAACGTTTGTGGAGGTTA+AGG 0.455588 3_1:-73970140 Msa0374520:CDS
GCATGATAAGGGCACCCAAA+AGG 0.457391 3_1:+73971627 None:intergenic
ACCAGGATGGAAGAAGTTCT+TGG 0.460018 3_1:-73975406 Msa0374520:CDS
AGTCTAGTTGTATCTATCAT+TGG 0.463106 3_1:-73970696 Msa0374520:CDS
GCCAGAAGGGGTCACATTAA+CGG 0.463878 3_1:+73975634 None:intergenic
GCCATCACTGGAACCTATGC+AGG 0.467177 3_1:-73970906 Msa0374520:CDS
TCCTTAAGTTTAGCAGCAGC+AGG 0.474703 3_1:-73970496 Msa0374520:CDS
AGACACTGTTGTAACGTTTG+TGG 0.479496 3_1:-73970149 Msa0374520:CDS
ATATATATACGGCATGATAA+GGG 0.481081 3_1:+73971616 None:intergenic
AGGTGGCAAATGTGTTCATC+GGG 0.481596 3_1:-73970234 Msa0374520:CDS
TCCACATCCCTGTATGGGGA+GGG 0.483367 3_1:-73973504 Msa0374520:CDS
GGACAAAGTTCTGCCATCAC+TGG 0.489514 3_1:-73970918 Msa0374520:CDS
CATGATAAGGGCACCCAAAA+GGG 0.490780 3_1:+73971628 None:intergenic
AGCCAATGATTGAATTATGC+AGG 0.491531 3_1:+73974814 None:intergenic
AATTGATCGTGGCAGTGATT+GGG 0.494980 3_1:-73973552 Msa0374520:intron
TGCAGGCCAGTTTATCATGC+AGG 0.497043 3_1:-73970889 Msa0374520:intron
CCACATCCCTGTATGGGGAG+GGG 0.502179 3_1:-73973503 Msa0374520:CDS
GATGTCGATTAGAATGTGTT+GGG 0.506492 3_1:-73970984 Msa0374520:intron
TCTGATGTATTCAGTTGTTG+TGG 0.511267 3_1:-73974862 Msa0374520:intron
GGGGAGGGGTTCTGTTGACT+GGG 0.512702 3_1:-73973489 Msa0374520:CDS
TCACTCGACCAGAGGGACTT+AGG 0.513221 3_1:-73970021 Msa0374520:CDS
GCCATAGCATTGCTAGCCTC+AGG 0.513448 3_1:-73970939 Msa0374520:CDS
TGGAGCTAACCACGGATATG+AGG 0.513573 3_1:-73974993 Msa0374520:intron
CAGCTTTACAAATTTCTGAA+AGG 0.514902 3_1:+73974363 None:intergenic
ATTCTTGTGAGGTCCCATCT+TGG 0.520680 3_1:+73970472 None:intergenic
TACAACTAGACTTGGTGCTA+TGG 0.521234 3_1:+73970707 None:intergenic
TATAAGGAGGTGTGCCAGAA+GGG 0.523324 3_1:+73975621 None:intergenic
GGATAAGGAACTTGGTGACT+AGG 0.528011 3_1:-73970737 Msa0374520:CDS
CTAGTTGTATCTATCATTGG+TGG 0.528310 3_1:-73970693 Msa0374520:CDS
TGCAGATCATTATCATCTCA+TGG 0.528542 3_1:-73970342 Msa0374520:intron
TGATTCCTCAAAGCAAGATC+AGG 0.528741 3_1:-73975591 Msa0374520:intron
ATTATCATCTCATGGATACT+GGG 0.533025 3_1:-73970334 Msa0374520:CDS
GTGGAAACTGATTTGCAAGC+TGG 0.533541 3_1:-73975013 Msa0374520:CDS
GATGATACAGGTGAGGAAGT+TGG 0.533925 3_1:-73971795 Msa0374520:intron
AAGGTGGCAAATGTGTTCAT+CGG 0.535021 3_1:-73970235 Msa0374520:CDS
CCTGCTAAAGGAGTAATTGA+GGG 0.537944 3_1:-73971701 Msa0374520:CDS
TAGCAGCAGCAGGACCAAGA+TGG 0.540609 3_1:-73970486 Msa0374520:CDS
GCAAATCTTGGAGTGTGCAC+TGG 0.541003 3_1:-73974791 Msa0374520:intron
TCCTTGGCCTACCTTGATCC+CGG 0.541201 3_1:-73975357 Msa0374520:CDS
ACTATTCCACATCCCTGTAT+GGG 0.541340 3_1:-73973509 Msa0374520:CDS
TTTGTAAAGCTGAGTACCCA+TGG 0.542389 3_1:-73974352 Msa0374520:CDS
TCCTGAGGCTAGCAATGCTA+TGG 0.543434 3_1:+73970938 None:intergenic
TCAATTACTCCTTTAGCAGG+GGG 0.546528 3_1:+73971704 None:intergenic
TGATGTCGATTAGAATGTGT+TGG 0.550289 3_1:-73970985 Msa0374520:intron
CCTCAATTACTCCTTTAGCA+GGG 0.550345 3_1:+73971702 None:intergenic
CATGATAAACTGGCCTGCAT+AGG 0.550503 3_1:+73970893 None:intergenic
CCCCTCCCCATACAGGGATG+TGG 0.550519 3_1:+73973503 None:intergenic
AAGACTCATTATCATTGCAT+CGG 0.550734 3_1:-73970655 Msa0374520:intron
AGGAGTGGAATTAAAGCGAA+TGG 0.550794 3_1:+73970515 None:intergenic
AAGCAGTATTTCACAAACCA+TGG 0.552975 3_1:+73974335 None:intergenic
CTTGCTTTGAGGAATCATCA+TGG 0.559790 3_1:+73975597 None:intergenic
AGCAGCAGCAGGACCAAGAT+GGG 0.560663 3_1:-73970485 Msa0374520:CDS
CCCTGCTAAAGGAGTAATTG+AGG 0.561586 3_1:-73971702 Msa0374520:CDS
ACTCACAACCTAAGTCCCTC+TGG 0.563218 3_1:+73970013 None:intergenic
GCCTGCATAGGTTCCAGTGA+TGG 0.566805 3_1:+73970905 None:intergenic
CACTGTTGTAACGTTTGTGG+AGG 0.573180 3_1:-73970146 Msa0374520:CDS
CTCAGCGGAAATGGTGCTGT+AGG 0.574279 3_1:-73971662 Msa0374520:CDS
TGCAAACCCACGTGGAAAAG+GGG 0.579067 3_1:-73970105 Msa0374520:CDS
TTCCACATCCCTGTATGGGG+AGG 0.579702 3_1:-73973505 Msa0374520:CDS
TCCGGGATCAAGGTAGGCCA+AGG 0.580113 3_1:+73975356 None:intergenic
TTGATGCCACGCTTAGTACC+AGG 0.584278 3_1:+73971399 None:intergenic
ACTATTTCCGGGATCAAGGT+AGG 0.587421 3_1:+73975350 None:intergenic
AACCCACAAAAGCAGTAATG+AGG 0.591854 3_1:+73970281 None:intergenic
AGATACTTTCTCATTGAGAG+TGG 0.591903 3_1:-73971246 Msa0374520:CDS
GTTGCAATGATTTCTGTGAC+TGG 0.594533 3_1:-73971192 Msa0374520:CDS
CATTGATGAAAACAGAAACC+AGG 0.596835 3_1:-73975423 Msa0374520:intron
TTATAAGGAGGTGTGCCAGA+AGG 0.602066 3_1:+73975620 None:intergenic
GAATAGTATGTTTAGTGCAA+AGG 0.605048 3_1:+73973525 None:intergenic
ATGATAGATACAACTAGACT+TGG 0.605967 3_1:+73970699 None:intergenic
GAGATAGCACTAGAGCAGAA+TGG 0.606849 3_1:+73971430 None:intergenic
TCATAACAGTCTACCAAAGG+TGG 0.609151 3_1:-73970251 Msa0374520:CDS
TTTGGGTCTACAAAGATTTG+GGG 0.611662 3_1:-73973449 Msa0374520:intron
GCCAAGGAGACAAGAAAACC+AGG 0.612129 3_1:+73975372 None:intergenic
AAGAAGTTCTTGGCATATGT+AGG 0.614916 3_1:-73975396 Msa0374520:CDS
ACAGAACCCCTCCCCATACA+GGG 0.617014 3_1:+73973497 None:intergenic
AGCTGATATCACTCGACCAG+AGG 0.619373 3_1:-73970029 Msa0374520:CDS
CTATTCCACATCCCTGTATG+GGG 0.625216 3_1:-73973508 Msa0374520:CDS
ATAAGGAGGTGTGCCAGAAG+GGG 0.630304 3_1:+73975622 None:intergenic
AAAATACCTGGTACTAAGCG+TGG 0.631107 3_1:-73971405 Msa0374520:CDS
AGCAGTATTTCACAAACCAT+GGG 0.631884 3_1:+73974336 None:intergenic
GCTGATATCACTCGACCAGA+GGG 0.633224 3_1:-73970028 Msa0374520:CDS
CTGCTGCTAAACTTAAGGAG+TGG 0.639448 3_1:+73970500 None:intergenic
ACTAAATTAGAACCTGGAGA+AGG 0.648262 3_1:+73971091 None:intergenic
AATTCATAACAGTCTACCAA+AGG 0.650188 3_1:-73970254 Msa0374520:CDS
ATAGCTGCAGACATACCTGA+AGG 0.662081 3_1:-73974287 Msa0374520:intron
GATGAAAACAGAAACCAGGA+TGG 0.662101 3_1:-73975419 Msa0374520:intron
GATCGTGGCAGTGATTGGGA+CGG 0.663462 3_1:-73973548 Msa0374520:intron
GATGGCAGAACTTTGTCCTG+AGG 0.667648 3_1:+73970923 None:intergenic
GAATCATCATGGTTATAAGG+AGG 0.667714 3_1:+73975608 None:intergenic
CCCAGCAATGCAAACCCACG+TGG 0.668954 3_1:-73970113 Msa0374520:CDS
ACAATGATAGAATTCTTGTG+AGG 0.669610 3_1:+73970461 None:intergenic
GAAAAGGGGTTCGTAAACGA+TGG 0.672922 3_1:-73970091 Msa0374520:CDS
ATGTTTGTTCCCAAACTCAG+CGG 0.678012 3_1:-73971677 Msa0374520:CDS
ATAGCACTAGAGCAGAATGG+AGG 0.685112 3_1:+73971433 None:intergenic
TTGCAAGCTGGAGCTAACCA+CGG 0.687380 3_1:-73975001 Msa0374520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATATATATTTAATTA+AGG + chr3_1:73972611-73972630 None:intergenic 0.0%
!!! CAATTATTATTATTTTTCAA+TGG + chr3_1:73970801-73970820 None:intergenic 10.0%
!! AGTTAATCAAATAATAATAT+TGG - chr3_1:73971162-73971181 Msa0374520:CDS 10.0%
!! TATTGTATATATAAAAAATG+AGG + chr3_1:73971548-73971567 None:intergenic 10.0%
!! AAAAAAAAAAAATGCTTAAA+CGG + chr3_1:73972794-73972813 None:intergenic 10.0%
!!! TCAAACTATAAATTATATTT+TGG - chr3_1:73973285-73973304 Msa0374520:intron 10.0%
!!! TATTATATTTTAACAATCAA+TGG - chr3_1:73973327-73973346 Msa0374520:intron 10.0%
!!! TAAAGTCTACTTTTTTTTTT+TGG - chr3_1:73970179-73970198 Msa0374520:CDS 15.0%
!! TATATGAATATACTATGATA+TGG + chr3_1:73971121-73971140 None:intergenic 15.0%
!! ATTATTTGATTAACTAACTT+AGG + chr3_1:73971157-73971176 None:intergenic 15.0%
!!! TTTAATGGTTTTGATTATAA+AGG + chr3_1:73971473-73971492 None:intergenic 15.0%
!! TATTGATGAGTTAAATTTAA+TGG + chr3_1:73971488-73971507 None:intergenic 15.0%
!!! TATTGAAATTTAAGTTTGAA+CGG - chr3_1:73971793-73971812 Msa0374520:intron 15.0%
!! TGTATATATAGAAGATAAAT+AGG + chr3_1:73972111-73972130 None:intergenic 15.0%
!!! GACAAATTGATAATATAATA+AGG - chr3_1:73972651-73972670 Msa0374520:intron 15.0%
!! TTGTATATGATCTTATATTT+AGG - chr3_1:73972714-73972733 Msa0374520:intron 15.0%
!! TGTATATGATCTTATATTTA+GGG - chr3_1:73972715-73972734 Msa0374520:intron 15.0%
!!! TAAGCATTTTTTTTTTTTTG+TGG - chr3_1:73972796-73972815 Msa0374520:intron 15.0%
!! AATATGTGTATTTATTGTAT+TGG + chr3_1:73972960-73972979 None:intergenic 15.0%
!! TCATAAAAACATATTTAAAG+AGG - chr3_1:73972981-73973000 Msa0374520:intron 15.0%
!! CATAAAAACATATTTAAAGA+GGG - chr3_1:73972982-73973001 Msa0374520:intron 15.0%
!! AGACAATAATTAATATGTTT+AGG + chr3_1:73973216-73973235 None:intergenic 15.0%
!! ATATTGTAATATGTAAAAGT+TGG - chr3_1:73973402-73973421 Msa0374520:intron 15.0%
!! TATTGTAATATGTAAAAGTT+GGG - chr3_1:73973403-73973422 Msa0374520:intron 15.0%
!! ATTAAAATAGTCAATGTAAT+GGG + chr3_1:73973711-73973730 None:intergenic 15.0%
!! ATCGAATTTAATGTAAAATT+AGG + chr3_1:73974185-73974204 None:intergenic 15.0%
!! ATATATTTAATTGATTATGC+AGG - chr3_1:73974418-73974437 Msa0374520:intron 15.0%
!!! AACTTAAAAGTTTTAGTATA+AGG - chr3_1:73974868-73974887 Msa0374520:intron 15.0%
!!! AGTAGACTTTAACTTAATTA+GGG + chr3_1:73970170-73970189 None:intergenic 20.0%
!!! AAGTAGACTTTAACTTAATT+AGG + chr3_1:73970171-73970190 None:intergenic 20.0%
!! ATAGAGAAAATTACTATTTC+CGG + chr3_1:73970360-73970379 None:intergenic 20.0%
!!! TTTTTGATTATAATAGTGAC+CGG + chr3_1:73970412-73970431 None:intergenic 20.0%
!! AATATAAAACCTTACAAAGT+TGG - chr3_1:73971084-73971103 Msa0374520:intron 20.0%
!! ATATAAAACCTTACAAAGTT+GGG - chr3_1:73971085-73971104 Msa0374520:intron 20.0%
!!! TTGTGAAAACTATTTTAGAT+AGG + chr3_1:73971211-73971230 None:intergenic 20.0%
!! GAACAACAAATATCAAATAA+TGG + chr3_1:73971293-73971312 None:intergenic 20.0%
!! TGATTATAAAGGAAAAAACA+AGG + chr3_1:73971462-73971481 None:intergenic 20.0%
!!! ATGTATTTTAGTCATTTACA+TGG - chr3_1:73971718-73971737 Msa0374520:CDS 20.0%
!! TATTAAAATTCAAGCATGAA+TGG - chr3_1:73971870-73971889 Msa0374520:intron 20.0%
!! TAATGTTATAAAATTGATCG+TGG - chr3_1:73972132-73972151 Msa0374520:intron 20.0%
!! CAGGTATTAAAAAAAATTGT+TGG - chr3_1:73972541-73972560 Msa0374520:intron 20.0%
!! TATAAATTACTCCCATAAAA+AGG - chr3_1:73972750-73972769 Msa0374520:intron 20.0%
!! ATAAATTACTCCCATAAAAA+GGG - chr3_1:73972751-73972770 Msa0374520:intron 20.0%
!! ATTGTAATATGTAAAAGTTG+GGG - chr3_1:73973404-73973423 Msa0374520:intron 20.0%
!!! TTTTTTTTTGTCAAGTAACA+TGG + chr3_1:73973474-73973493 None:intergenic 20.0%
!! TTAAAATAGTCAATGTAATG+GGG + chr3_1:73973710-73973729 None:intergenic 20.0%
!! GATTAAAATAGTCAATGTAA+TGG + chr3_1:73973712-73973731 None:intergenic 20.0%
!! TTCAATTCTAGTATTTGTAA+TGG - chr3_1:73973933-73973952 Msa0374520:intron 20.0%
!! TTATTGAAGTAAAAGAAAAG+AGG + chr3_1:73974112-73974131 None:intergenic 20.0%
!! TATATGAGTTTATTTCACTT+GGG + chr3_1:73974329-73974348 None:intergenic 20.0%
!! ATATATGAGTTTATTTCACT+TGG + chr3_1:73974330-73974349 None:intergenic 20.0%
!! TAAAGATGAAAAAATGGATA+AGG - chr3_1:73974943-73974962 Msa0374520:intron 20.0%
! TGTACAATATTAGTTCCAAA+CGG + chr3_1:73970212-73970231 None:intergenic 25.0%
! TAGAGAAAATTACTATTTCC+GGG + chr3_1:73970359-73970378 None:intergenic 25.0%
! GTCATATTATATACACTATC+CGG - chr3_1:73970390-73970409 Msa0374520:intron 25.0%
! CATTCATTAAATGATGTATG+TGG + chr3_1:73970485-73970504 None:intergenic 25.0%
!!! TTTGTTGTTCAAATTTTGAC+AGG - chr3_1:73971303-73971322 Msa0374520:intron 25.0%
! GTGATGTACATGTAAATAAA+TGG + chr3_1:73971592-73971611 None:intergenic 25.0%
!!! TTGAACGGTTAGTTTTATAT+CGG - chr3_1:73971808-73971827 Msa0374520:intron 25.0%
! ACGCATCCATATTAAAATAT+TGG - chr3_1:73971958-73971977 Msa0374520:intron 25.0%
!!! GGACATCCAATATTTTAATA+TGG + chr3_1:73971967-73971986 None:intergenic 25.0%
! AACACTATCATATAATGTTG+GGG + chr3_1:73971997-73972016 None:intergenic 25.0%
! GAACACTATCATATAATGTT+GGG + chr3_1:73971998-73972017 None:intergenic 25.0%
! TGAACACTATCATATAATGT+TGG + chr3_1:73971999-73972018 None:intergenic 25.0%
!!! CTTTTGATTTTTCCTTTTCA+TGG - chr3_1:73972332-73972351 Msa0374520:intron 25.0%
! TACATCAAAATAGTAGAAGT+CGG + chr3_1:73972374-73972393 None:intergenic 25.0%
! AAAATGTATAAGCTATGGTT+TGG + chr3_1:73972461-73972480 None:intergenic 25.0%
!! AAACCATAGCTTATACATTT+TGG - chr3_1:73972460-73972479 Msa0374520:intron 25.0%
! ATTCCAAAATGTATAAGCTA+TGG + chr3_1:73972466-73972485 None:intergenic 25.0%
! GAGTTGTTTAAAAAAAACAC+AGG - chr3_1:73972522-73972541 Msa0374520:intron 25.0%
!!! GCATTTTTTTTTTTTTGTGG+TGG - chr3_1:73972799-73972818 Msa0374520:intron 25.0%
!!! TTTTTTTTTTTTGTGGTGGT+CGG - chr3_1:73972803-73972822 Msa0374520:intron 25.0%
! AAACATATTTAAAGAGGGAA+TGG - chr3_1:73972987-73973006 Msa0374520:intron 25.0%
! TTAATGGTGTAGATGTAAAA+TGG - chr3_1:73973116-73973135 Msa0374520:intron 25.0%
! AGATGTAAAATGGAGAAAAA+TGG - chr3_1:73973126-73973145 Msa0374520:intron 25.0%
! ATATTAATGAGCTACATTCA+AGG + chr3_1:73973639-73973658 None:intergenic 25.0%
! CAAAGTAAATATTGATGAGA+GGG + chr3_1:73973762-73973781 None:intergenic 25.0%
! TCAAAGTAAATATTGATGAG+AGG + chr3_1:73973763-73973782 None:intergenic 25.0%
!!! TCTCTTAACTTCTACTTTTT+TGG - chr3_1:73973877-73973896 Msa0374520:intron 25.0%
!!! CTCTTAACTTCTACTTTTTT+GGG - chr3_1:73973878-73973897 Msa0374520:intron 25.0%
! ATATATATACGGCATGATAA+GGG + chr3_1:73974082-73974101 None:intergenic 25.0%
! AATATATATACGGCATGATA+AGG + chr3_1:73974083-73974102 None:intergenic 25.0%
!! TTTTTCTGACAAAATTATGC+AGG - chr3_1:73974228-73974247 Msa0374520:intron 25.0%
! ATATGAGTTTATTTCACTTG+GGG + chr3_1:73974328-73974347 None:intergenic 25.0%
!!! TATTTTAAGTTTAGCGCTTA+TGG + chr3_1:73974358-73974377 None:intergenic 25.0%
! ATGTAAATACTTGCTTGATT+AGG + chr3_1:73974674-73974693 None:intergenic 25.0%
!!! TATAAGGTGTTGTTAAACTT+GGG - chr3_1:73974884-73974903 Msa0374520:intron 25.0%
! TGGACTTAAAGATGAAAAAA+TGG - chr3_1:73974937-73974956 Msa0374520:intron 25.0%
! CTTTATAGTACAAGGAAATA+GGG + chr3_1:73975266-73975285 None:intergenic 25.0%
! ACTTTATAGTACAAGGAAAT+AGG + chr3_1:73975267-73975286 None:intergenic 25.0%
! TATTTCCTTGTACTATAAAG+TGG - chr3_1:73975266-73975285 Msa0374520:intron 25.0%
!! CCAAAATTATGTCACATTTT+TGG + chr3_1:73975333-73975352 None:intergenic 25.0%
!! CCAAAAATGTGACATAATTT+TGG - chr3_1:73975330-73975349 Msa0374520:intron 25.0%
TTGCTTATAATAGTGTTCAG+AGG - chr3_1:73970525-73970544 Msa0374520:CDS 30.0%
TGCTTATAATAGTGTTCAGA+GGG - chr3_1:73970526-73970545 Msa0374520:CDS 30.0%
!!! CATATTTGTCATTTTTGCAG+TGG - chr3_1:73970663-73970682 Msa0374520:CDS 30.0%
TTGTTGTGGATCATACTTAT+TGG - chr3_1:73970847-73970866 Msa0374520:intron 30.0%
ACAAGAACAAAAGCTCAAAT+AGG - chr3_1:73971227-73971246 Msa0374520:CDS 30.0%
CAGCTTTACAAATTTCTGAA+AGG + chr3_1:73971335-73971354 None:intergenic 30.0%
GTACATGTAAATAAATGGCA+AGG + chr3_1:73971587-73971606 None:intergenic 30.0%
! CAATATTTTTCCTTGATGTG+AGG + chr3_1:73971900-73971919 None:intergenic 30.0%
CTCACATCAAGGAAAAATAT+TGG - chr3_1:73971898-73971917 Msa0374520:intron 30.0%
GAATAGTATGTTTAGTGCAA+AGG + chr3_1:73972173-73972192 None:intergenic 30.0%
!!! TTTTTGGGTCTACAAAGATT+TGG - chr3_1:73972244-73972263 Msa0374520:intron 30.0%
!! TTTTGGGTCTACAAAGATTT+GGG - chr3_1:73972245-73972264 Msa0374520:intron 30.0%
AAAAGCTAGAAACCATGAAA+AGG + chr3_1:73972347-73972366 None:intergenic 30.0%
!!! TTTTTTTTTTTGTGGTGGTC+GGG - chr3_1:73972804-73972823 Msa0374520:intron 30.0%
TATTGTCTTTAATGTCCACT+TGG - chr3_1:73973228-73973247 Msa0374520:intron 30.0%
TCAAATAAGTGAGAAATCTG+AGG + chr3_1:73973436-73973455 None:intergenic 30.0%
!! ACTTATTTTTCATCCGAACT+CGG + chr3_1:73973556-73973575 None:intergenic 30.0%
GAGGAGGAAGAATATATATA+CGG + chr3_1:73974093-73974112 None:intergenic 30.0%
TTGAAGTAAAAGAAAAGAGG+AGG + chr3_1:73974109-73974128 None:intergenic 30.0%
TGTCAGAAAAAAAATCAGCA+AGG + chr3_1:73974219-73974238 None:intergenic 30.0%
AAGTGAACTAAATTAGAACC+TGG + chr3_1:73974613-73974632 None:intergenic 30.0%
AAATAACCTGCATGATAAAC+TGG + chr3_1:73974815-73974834 None:intergenic 30.0%
!! GTATAAGGTGTTGTTAAACT+TGG - chr3_1:73974883-73974902 Msa0374520:intron 30.0%
! GTTAAACTTGGGTTTTTGTT+TGG - chr3_1:73974895-73974914 Msa0374520:intron 30.0%
!! TTTTGTTTGGTTGTTGCTAT+AGG - chr3_1:73974908-73974927 Msa0374520:intron 30.0%
TTTGTTTGGTTGTTGCTATA+GGG - chr3_1:73974909-73974928 Msa0374520:intron 30.0%
GAAAAAATGGATAAGGAACT+TGG - chr3_1:73974950-73974969 Msa0374520:intron 30.0%
AAGACTCATTATCATTGCAT+CGG - chr3_1:73975040-73975059 Msa0374520:intron 30.0%
ACAATGATAGAATTCTTGTG+AGG + chr3_1:73975237-73975256 None:intergenic 30.0%
! TTCAAAGGCTTTAGCTTAAT+GGG + chr3_1:73975298-73975317 None:intergenic 30.0%
! TTTCAAAGGCTTTAGCTTAA+TGG + chr3_1:73975299-73975318 None:intergenic 30.0%
!!! TATGTCACATTTTTGGCTTT+TGG + chr3_1:73975326-73975345 None:intergenic 30.0%
ATTATCATCTCATGGATACT+GGG - chr3_1:73975361-73975380 Msa0374520:CDS 30.0%
AATTCATAACAGTCTACCAA+AGG - chr3_1:73975441-73975460 Msa0374520:intron 30.0%
TCAGCTAAATCTTCTCTATA+AGG + chr3_1:73975652-73975671 None:intergenic 30.0%
GCACATCAAGAAGTGAATAA+TGG - chr3_1:73970018-73970037 Msa0374520:CDS 35.0%
TCACATTAACGGCTACTATA+CGG + chr3_1:73970053-73970072 None:intergenic 35.0%
GAATCATCATGGTTATAAGG+AGG + chr3_1:73970090-73970109 None:intergenic 35.0%
GAGGAATCATCATGGTTATA+AGG + chr3_1:73970093-73970112 None:intergenic 35.0%
!!! TTTTTTGGAGTCATTCCGTT+TGG - chr3_1:73970194-73970213 Msa0374520:CDS 35.0%
! CTGGTTTCTGTTTTCATCAA+TGG + chr3_1:73970274-73970293 None:intergenic 35.0%
CATTGATGAAAACAGAAACC+AGG - chr3_1:73970272-73970291 Msa0374520:CDS 35.0%
AAGAAGTTCTTGGCATATGT+AGG - chr3_1:73970299-73970318 Msa0374520:CDS 35.0%
AATTACTATTTCCGGGATCA+AGG + chr3_1:73970352-73970371 None:intergenic 35.0%
TCTGATGTATTCAGTTGTTG+TGG - chr3_1:73970833-73970852 Msa0374520:intron 35.0%
TGCCTGCATAATTCAATCAT+TGG - chr3_1:73970879-73970898 Msa0374520:intron 35.0%
AGCCAATGATTGAATTATGC+AGG + chr3_1:73970884-73970903 None:intergenic 35.0%
CTACAACACAACCAAAATTG+AGG + chr3_1:73970935-73970954 None:intergenic 35.0%
ACTAACTTAGGATAGAGACT+TGG + chr3_1:73971145-73971164 None:intergenic 35.0%
AAAAGCTCAAATAGGAAACG+TGG - chr3_1:73971235-73971254 Msa0374520:CDS 35.0%
AAAGCTCAAATAGGAAACGT+GGG - chr3_1:73971236-73971255 Msa0374520:CDS 35.0%
AGCAGTATTTCACAAACCAT+GGG + chr3_1:73971362-73971381 None:intergenic 35.0%
AAGCAGTATTTCACAAACCA+TGG + chr3_1:73971363-73971382 None:intergenic 35.0%
GGTTTGTGAAATACTGCTTA+TGG - chr3_1:73971364-73971383 Msa0374520:intron 35.0%
AAAAAGGAATTAGCACCTTC+AGG + chr3_1:73971426-73971445 None:intergenic 35.0%
AGGTGATGAACAACAGAAAA+AGG + chr3_1:73971442-73971461 None:intergenic 35.0%
!! ATATAATGTTGGGGAGTATC+AGG + chr3_1:73971988-73972007 None:intergenic 35.0%
TTTGGGTCTACAAAGATTTG+GGG - chr3_1:73972246-73972265 Msa0374520:intron 35.0%
TCCGATATTAAATACTCCCT+CGG - chr3_1:73972486-73972505 Msa0374520:intron 35.0%
!! ACCGAGGGAGTATTTAATAT+CGG + chr3_1:73972490-73972509 None:intergenic 35.0%
CTCATATAAAAAGAGACCGA+GGG + chr3_1:73972505-73972524 None:intergenic 35.0%
ACTCATATAAAAAGAGACCG+AGG + chr3_1:73972506-73972525 None:intergenic 35.0%
ATTACTCCCATAAAAAGGGA+CGG - chr3_1:73972755-73972774 Msa0374520:intron 35.0%
!!! TTTTTTTTTTGTGGTGGTCG+GGG - chr3_1:73972805-73972824 Msa0374520:intron 35.0%
CATAATATATGCAAGATCCG+TGG + chr3_1:73972837-73972856 None:intergenic 35.0%
! TGAGTTTAACTCAGTTGGTA+TGG + chr3_1:73972866-73972885 None:intergenic 35.0%
GAATCATGATATTGTGTGTG+TGG + chr3_1:73973062-73973081 None:intergenic 35.0%
CGTCTCTCTCTCATATTTAA+TGG - chr3_1:73973100-73973119 Msa0374520:intron 35.0%
TACCAGTTAAGTTAAGCTCA+CGG + chr3_1:73973379-73973398 None:intergenic 35.0%
CAATTGTTTCCCTTTCTCTT+TGG - chr3_1:73973495-73973514 Msa0374520:CDS 35.0%
GTTAACACACCAAAGAGAAA+GGG + chr3_1:73973507-73973526 None:intergenic 35.0%
! TTTGGTGTGTTAACCCTAAA+GGG - chr3_1:73973513-73973532 Msa0374520:CDS 35.0%
TTCAAATCAAACACTAGCGA+GGG + chr3_1:73973687-73973706 None:intergenic 35.0%
!!! CTACTTTTTTGGGATGATAC+AGG - chr3_1:73973888-73973907 Msa0374520:intron 35.0%
AGATACTTTCTCATTGAGAG+TGG - chr3_1:73974449-73974468 Msa0374520:intron 35.0%
TGCAAAGCTGATGATATTTC+TGG - chr3_1:73974533-73974552 Msa0374520:intron 35.0%
AAGGAAAGAAGCAGAGTTAA+GGG + chr3_1:73974588-73974607 None:intergenic 35.0%
ACTAAATTAGAACCTGGAGA+AGG + chr3_1:73974607-73974626 None:intergenic 35.0%
AGTTCACTTTGCAGCTATTA+TGG - chr3_1:73974624-73974643 Msa0374520:intron 35.0%
! TGATGTCGATTAGAATGTGT+TGG - chr3_1:73974710-73974729 Msa0374520:intron 35.0%
! GATGTCGATTAGAATGTGTT+GGG - chr3_1:73974711-73974730 Msa0374520:intron 35.0%
AATATGTACACATACGCAGA+AGG + chr3_1:73975098-73975117 None:intergenic 35.0%
TTCTGCGTATGTGTACATAT+TGG - chr3_1:73975097-73975116 Msa0374520:intron 35.0%
AGTGACCACTTTATAGTACA+AGG + chr3_1:73975274-73975293 None:intergenic 35.0%
!!! TGGCTTTTGGCTTATTTCAA+AGG + chr3_1:73975313-73975332 None:intergenic 35.0%
TGCAGATCATTATCATCTCA+TGG - chr3_1:73975353-73975372 Msa0374520:CDS 35.0%
CATTATCATCTCATGGATAC+TGG - chr3_1:73975360-73975379 Msa0374520:CDS 35.0%
!! TACCTCATTACTGCTTTTGT+GGG - chr3_1:73975412-73975431 Msa0374520:intron 35.0%
!! CTTGCTTTGAGGAATCATCA+TGG + chr3_1:73970101-73970120 None:intergenic 40.0%
TGATTCCTCAAAGCAAGATC+AGG - chr3_1:73970104-73970123 Msa0374520:CDS 40.0%
TAGTACCTGATCTTGCTTTG+AGG + chr3_1:73970112-73970131 None:intergenic 40.0%
GATGAAAACAGAAACCAGGA+TGG - chr3_1:73970276-73970295 Msa0374520:CDS 40.0%
! AGAGTTTTACCTCATATCCG+TGG + chr3_1:73970714-73970733 None:intergenic 40.0%
! CAATCATTGGCTGCAAATCT+TGG - chr3_1:73970892-73970911 Msa0374520:CDS 40.0%
! CACTGGTAAGACCTCAATTT+TGG - chr3_1:73970921-73970940 Msa0374520:CDS 40.0%
TGATATCGCCCAACTTTGTA+AGG + chr3_1:73971096-73971115 None:intergenic 40.0%
AAGCTCAAATAGGAAACGTG+GGG - chr3_1:73971237-73971256 Msa0374520:CDS 40.0%
TTTGTAAAGCTGAGTACCCA+TGG - chr3_1:73971343-73971362 Msa0374520:intron 40.0%
TTAATATGGATGCGTGCATG+CGG + chr3_1:73971953-73971972 None:intergenic 40.0%
AAATTGATCGTGGCAGTGAT+TGG - chr3_1:73972142-73972161 Msa0374520:intron 40.0%
AATTGATCGTGGCAGTGATT+GGG - chr3_1:73972143-73972162 Msa0374520:intron 40.0%
TACTATTCCACATCCCTGTA+TGG - chr3_1:73972185-73972204 Msa0374520:intron 40.0%
ACTATTCCACATCCCTGTAT+GGG - chr3_1:73972186-73972205 Msa0374520:intron 40.0%
!!! TGCAGCACTCTCTTGTTTTT+GGG - chr3_1:73972229-73972248 Msa0374520:intron 40.0%
!! CATTCAAGGGCATTAAAGAC+AGG + chr3_1:73972407-73972426 None:intergenic 40.0%
CTCTTCAAGGATGCATTCAA+GGG + chr3_1:73972420-73972439 None:intergenic 40.0%
TCTCTTCAAGGATGCATTCA+AGG + chr3_1:73972421-73972440 None:intergenic 40.0%
TTGAATGCATCCTTGAAGAG+AGG - chr3_1:73972420-73972439 Msa0374520:intron 40.0%
TCCTTGAAGAGAGGTCATAT+AGG - chr3_1:73972429-73972448 Msa0374520:intron 40.0%
ACCTATATGACCTCTCTTCA+AGG + chr3_1:73972433-73972452 None:intergenic 40.0%
AAGAGAGGTCATATAGGTCA+TGG - chr3_1:73972435-73972454 Msa0374520:intron 40.0%
TTACTCCCATAAAAAGGGAC+GGG - chr3_1:73972756-73972775 Msa0374520:intron 40.0%
CCACATGAGTTTAACTCAGT+TGG + chr3_1:73972871-73972890 None:intergenic 40.0%
CCAACTGAGTTAAACTCATG+TGG - chr3_1:73972868-73972887 Msa0374520:intron 40.0%
CCTATATGACCTCTCTTCAA+GGG + chr3_1:73972432-73972451 None:intergenic 40.0%
ACCTATATGACCTCTCTTCA+AGG + chr3_1:73972433-73972452 None:intergenic 40.0%
AAGAGAGGTCATATAGGTCA+TGG - chr3_1:73972435-73972454 Msa0374520:intron 40.0%
TTCCGTGAGCTTAACTTAAC+TGG - chr3_1:73973374-73973393 Msa0374520:intron 40.0%
GGTTAACACACCAAAGAGAA+AGG + chr3_1:73973508-73973527 None:intergenic 40.0%
! CTTTGGTGTGTTAACCCTAA+AGG - chr3_1:73973512-73973531 Msa0374520:CDS 40.0%
GTTCAAATCAAACACTAGCG+AGG + chr3_1:73973688-73973707 None:intergenic 40.0%
!!! AGCTCGGCTTTTTTGAACTA+AGG + chr3_1:73973734-73973753 None:intergenic 40.0%
!!! TTTTTGGGATGATACAGGTG+AGG - chr3_1:73973893-73973912 Msa0374520:intron 40.0%
GTAATGGCTGCATGTTTCTT+TGG - chr3_1:73973949-73973968 Msa0374520:intron 40.0%
TATGTAAAACCCCCTGCTAA+AGG - chr3_1:73973982-73974001 Msa0374520:intron 40.0%
TCAATTACTCCTTTAGCAGG+GGG + chr3_1:73973994-73974013 None:intergenic 40.0%
CTCAATTACTCCTTTAGCAG+GGG + chr3_1:73973995-73974014 None:intergenic 40.0%
CCTCAATTACTCCTTTAGCA+GGG + chr3_1:73973996-73974015 None:intergenic 40.0%
CCTGCTAAAGGAGTAATTGA+GGG - chr3_1:73973994-73974013 Msa0374520:intron 40.0%
ATGTTTGTTCCCAAACTCAG+CGG - chr3_1:73974018-73974037 Msa0374520:intron 40.0%
! AGTTCACGCAGAAAAGTGTA+TGG + chr3_1:73974140-73974159 None:intergenic 40.0%
GTGCTATCTCGAAAAATACC+TGG - chr3_1:73974278-73974297 Msa0374520:intron 40.0%
AAAATACCTGGTACTAAGCG+TGG - chr3_1:73974290-73974309 Msa0374520:CDS 40.0%
GTTGCAATGATTTCTGTGAC+TGG - chr3_1:73974503-73974522 Msa0374520:intron 40.0%
GAAGGAAAGAAGCAGAGTTA+AGG + chr3_1:73974589-73974608 None:intergenic 40.0%
GTTGTTGCTATAGGGTTTCT+TGG - chr3_1:73974917-73974936 Msa0374520:intron 40.0%
!! TACAACTAGACTTGGTGCTA+TGG + chr3_1:73974991-73975010 None:intergenic 40.0%
AGGAGTGGAATTAAAGCGAA+TGG + chr3_1:73975183-73975202 None:intergenic 40.0%
ATCTCATGGATACTGGGTTT+GGG - chr3_1:73975367-73975386 Msa0374520:CDS 40.0%
ATACTGGGTTTGGGAATCAT+TGG - chr3_1:73975376-73975395 Msa0374520:CDS 40.0%
!! CTACCTCATTACTGCTTTTG+TGG - chr3_1:73975411-73975430 Msa0374520:CDS 40.0%
AACCCACAAAAGCAGTAATG+AGG + chr3_1:73975417-73975436 None:intergenic 40.0%
!! TCATTACTGCTTTTGTGGGT+TGG - chr3_1:73975416-73975435 Msa0374520:intron 40.0%
TCATAACAGTCTACCAAAGG+TGG - chr3_1:73975444-73975463 Msa0374520:intron 40.0%
ATGAACACATTTGCCACCTT+TGG + chr3_1:73975460-73975479 None:intergenic 40.0%
AAGGTGGCAAATGTGTTCAT+CGG - chr3_1:73975460-73975479 Msa0374520:intron 40.0%
GCTCATTGTGTTTCCTCTAA+TGG - chr3_1:73975483-73975502 Msa0374520:intron 40.0%
! ACGATATACAGTGCCATTAG+AGG + chr3_1:73975499-73975518 None:intergenic 40.0%
AGACACTGTTGTAACGTTTG+TGG - chr3_1:73975546-73975565 Msa0374520:intron 40.0%
TGTAACGTTTGTGGAGGTTA+AGG - chr3_1:73975555-73975574 Msa0374520:intron 40.0%
! TATAAGGAGGTGTGCCAGAA+GGG + chr3_1:73970077-73970096 None:intergenic 45.0%
! TTATAAGGAGGTGTGCCAGA+AGG + chr3_1:73970078-73970097 None:intergenic 45.0%
ACCAGGATGGAAGAAGTTCT+TGG - chr3_1:73970289-73970308 Msa0374520:CDS 45.0%
TTCTTGGCATATGTAGGTCC+TGG - chr3_1:73970305-73970324 Msa0374520:CDS 45.0%
!! TCCTGGTTTTCTTGTCTCCT+TGG - chr3_1:73970322-73970341 Msa0374520:CDS 45.0%
ACTATTTCCGGGATCAAGGT+AGG + chr3_1:73970348-73970367 None:intergenic 45.0%
!! GTGGAAACTGATTTGCAAGC+TGG - chr3_1:73970682-73970701 Msa0374520:CDS 45.0%
ATAGCTGCAGACATACCTGA+AGG - chr3_1:73971408-73971427 Msa0374520:CDS 45.0%
!! GAATGGTTAGCCTCACATCA+AGG - chr3_1:73971887-73971906 Msa0374520:intron 45.0%
TAATATGGATGCGTGCATGC+GGG + chr3_1:73971952-73971971 None:intergenic 45.0%
CTATTCCACATCCCTGTATG+GGG - chr3_1:73972187-73972206 Msa0374520:intron 45.0%
!!! GTGCAGCACTCTCTTGTTTT+TGG - chr3_1:73972228-73972247 Msa0374520:intron 45.0%
! ACACTCCCGTCCCTTTTTAT+GGG + chr3_1:73972764-73972783 None:intergenic 45.0%
! ATAAAAAGGGACGGGAGTGT+CGG - chr3_1:73972764-73972783 Msa0374520:intron 45.0%
CCCTTGAAGAGAGGTCATAT+AGG - chr3_1:73973256-73973275 Msa0374520:intron 45.0%
TGATGAGAGGGTAGATAGCT+CGG + chr3_1:73973750-73973769 None:intergenic 45.0%
GATGATACAGGTGAGGAAGT+TGG - chr3_1:73973900-73973919 Msa0374520:intron 45.0%
CCCTGCTAAAGGAGTAATTG+AGG - chr3_1:73973993-73974012 Msa0374520:intron 45.0%
CCCTCAATTACTCCTTTAGC+AGG + chr3_1:73973997-73974016 None:intergenic 45.0%
!! CATGATAAGGGCACCCAAAA+GGG + chr3_1:73974070-73974089 None:intergenic 45.0%
ATAGCACTAGAGCAGAATGG+AGG + chr3_1:73974265-73974284 None:intergenic 45.0%
GAGATAGCACTAGAGCAGAA+TGG + chr3_1:73974268-73974287 None:intergenic 45.0%
! CATGATAAACTGGCCTGCAT+AGG + chr3_1:73974805-73974824 None:intergenic 45.0%
! GGATAAGGAACTTGGTGACT+AGG - chr3_1:73974958-73974977 Msa0374520:intron 45.0%
GTACACATACGCAGAAGGAA+GGG + chr3_1:73975093-73975112 None:intergenic 45.0%
TGTACACATACGCAGAAGGA+AGG + chr3_1:73975094-73975113 None:intergenic 45.0%
CTGCTGCTAAACTTAAGGAG+TGG + chr3_1:73975198-73975217 None:intergenic 45.0%
TCCTTAAGTTTAGCAGCAGC+AGG - chr3_1:73975199-73975218 Msa0374520:intron 45.0%
TCCTGCTGCTGCTAAACTTA+AGG + chr3_1:73975203-73975222 None:intergenic 45.0%
ATTCTTGTGAGGTCCCATCT+TGG + chr3_1:73975226-73975245 None:intergenic 45.0%
CATCTCATGGATACTGGGTT+TGG - chr3_1:73975366-73975385 Msa0374520:CDS 45.0%
AGGTGGCAAATGTGTTCATC+GGG - chr3_1:73975461-73975480 Msa0374520:intron 45.0%
CACTGTTGTAACGTTTGTGG+AGG - chr3_1:73975549-73975568 Msa0374520:intron 45.0%
AATGCAAACCCACGTGGAAA+AGG - chr3_1:73975588-73975607 Msa0374520:intron 45.0%
ATGCAAACCCACGTGGAAAA+GGG - chr3_1:73975589-73975608 Msa0374520:intron 45.0%
GAAAAGGGGTTCGTAAACGA+TGG - chr3_1:73975604-73975623 Msa0374520:CDS 45.0%
!!! AATATCAATATAATTATTTT+TGG + chr3_1:73970753-73970772 None:intergenic 5.0%
!!! TTTAATTTAAATATACTAAA+AGG - chr3_1:73971679-73971698 Msa0374520:CDS 5.0%
GCCAGAAGGGGTCACATTAA+CGG + chr3_1:73970064-73970083 None:intergenic 50.0%
! ATAAGGAGGTGTGCCAGAAG+GGG + chr3_1:73970076-73970095 None:intergenic 50.0%
GCCAAGAACTTCTTCCATCC+TGG + chr3_1:73970293-73970312 None:intergenic 50.0%
GCCAAGGAGACAAGAAAACC+AGG + chr3_1:73970326-73970345 None:intergenic 50.0%
TTGCAAGCTGGAGCTAACCA+CGG - chr3_1:73970694-73970713 Msa0374520:CDS 50.0%
TGGAGCTAACCACGGATATG+AGG - chr3_1:73970702-73970721 Msa0374520:CDS 50.0%
GCAAATCTTGGAGTGTGCAC+TGG - chr3_1:73970904-73970923 Msa0374520:CDS 50.0%
! GACACTCCCGTCCCTTTTTA+TGG + chr3_1:73972765-73972784 None:intergenic 50.0%
!! TAAAAAGGGACGGGAGTGTC+GGG - chr3_1:73972765-73972784 Msa0374520:intron 50.0%
!! TCTTCAAGGGAGCATCCAAG+TGG + chr3_1:73973246-73973265 None:intergenic 50.0%
TTGGATGCTCCCTTGAAGAG+AGG - chr3_1:73973247-73973266 Msa0374520:intron 50.0%
CCAGATCGCGTTTCCCTTTA+GGG + chr3_1:73973529-73973548 None:intergenic 50.0%
ACCAGATCGCGTTTCCCTTT+AGG + chr3_1:73973530-73973549 None:intergenic 50.0%
GCGATCTGGTAATCCGAGTT+CGG - chr3_1:73973540-73973559 Msa0374520:CDS 50.0%
GTTCCCAAACTCAGCGGAAA+TGG - chr3_1:73974024-73974043 Msa0374520:intron 50.0%
GCACCATTTCCGCTGAGTTT+GGG + chr3_1:73974030-73974049 None:intergenic 50.0%
AGCACCATTTCCGCTGAGTT+TGG + chr3_1:73974031-73974050 None:intergenic 50.0%
! AGGCGATGCTATTGCCCTTT+TGG - chr3_1:73974053-73974072 Msa0374520:intron 50.0%
! GGCGATGCTATTGCCCTTTT+GGG - chr3_1:73974054-73974073 Msa0374520:intron 50.0%
!! GCATGATAAGGGCACCCAAA+AGG + chr3_1:73974071-73974090 None:intergenic 50.0%
TTGATGCCACGCTTAGTACC+AGG + chr3_1:73974299-73974318 None:intergenic 50.0%
CTCTGCTTCTTTCCTTCTCC+AGG - chr3_1:73974592-73974611 Msa0374520:intron 50.0%
TCCTGAGGCTAGCAATGCTA+TGG + chr3_1:73974760-73974779 None:intergenic 50.0%
GATGGCAGAACTTTGTCCTG+AGG + chr3_1:73974775-73974794 None:intergenic 50.0%
GGACAAAGTTCTGCCATCAC+TGG - chr3_1:73974777-73974796 Msa0374520:intron 50.0%
TGCAGGCCAGTTTATCATGC+AGG - chr3_1:73974806-73974825 Msa0374520:CDS 50.0%
!! ATTGGTGGTTCTTCTGGAGC+TGG - chr3_1:73975017-73975036 Msa0374520:intron 50.0%
TACGCAGAAGGAAGGGAGAA+CGG + chr3_1:73975086-73975105 None:intergenic 50.0%
TGCAAACCCACGTGGAAAAG+GGG - chr3_1:73975590-73975609 Msa0374520:intron 50.0%
! TACGAACCCCTTTTCCACGT+GGG + chr3_1:73975599-73975618 None:intergenic 50.0%
! TTACGAACCCCTTTTCCACG+TGG + chr3_1:73975600-73975619 None:intergenic 50.0%
AGCTGATATCACTCGACCAG+AGG - chr3_1:73975666-73975685 Msa0374520:CDS 50.0%
GCTGATATCACTCGACCAGA+GGG - chr3_1:73975667-73975686 Msa0374520:CDS 50.0%
GCCGTTAATGTGACCCCTTC+TGG - chr3_1:73970060-73970079 Msa0374520:CDS 55.0%
TCCTTGGCCTACCTTGATCC+CGG - chr3_1:73970338-73970357 Msa0374520:CDS 55.0%
GCGCGTGCATGTGTGTTTGA+TGG + chr3_1:73971765-73971784 None:intergenic 55.0%
GATCGTGGCAGTGATTGGGA+CGG - chr3_1:73972147-73972166 Msa0374520:intron 55.0%
TTCCACATCCCTGTATGGGG+AGG - chr3_1:73972190-73972209 Msa0374520:intron 55.0%
TCCACATCCCTGTATGGGGA+GGG - chr3_1:73972191-73972210 Msa0374520:intron 55.0%
ACAGAACCCCTCCCCATACA+GGG + chr3_1:73972201-73972220 None:intergenic 55.0%
AACAGAACCCCTCCCCATAC+AGG + chr3_1:73972202-73972221 None:intergenic 55.0%
CCCTAAAGGGAAACGCGATC+TGG - chr3_1:73973526-73973545 Msa0374520:CDS 55.0%
!! CTCAGCGGAAATGGTGCTGT+AGG - chr3_1:73974033-73974052 Msa0374520:intron 55.0%
! GCCATAGCATTGCTAGCCTC+AGG - chr3_1:73974756-73974775 Msa0374520:intron 55.0%
GCCATCACTGGAACCTATGC+AGG - chr3_1:73974789-73974808 Msa0374520:intron 55.0%
GCCTGCATAGGTTCCAGTGA+TGG + chr3_1:73974793-73974812 None:intergenic 55.0%
TAGCAGCAGCAGGACCAAGA+TGG - chr3_1:73975209-73975228 Msa0374520:intron 55.0%
AGCAGCAGCAGGACCAAGAT+GGG - chr3_1:73975210-73975229 Msa0374520:intron 55.0%
CCACGTGGGTTTGCATTGCT+GGG + chr3_1:73975585-73975604 None:intergenic 55.0%
TCCACGTGGGTTTGCATTGC+TGG + chr3_1:73975586-73975605 None:intergenic 55.0%
TCACTCGACCAGAGGGACTT+AGG - chr3_1:73975674-73975693 Msa0374520:CDS 55.0%
TCCGGGATCAAGGTAGGCCA+AGG + chr3_1:73970342-73970361 None:intergenic 60.0%
CCACATCCCTGTATGGGGAG+GGG - chr3_1:73972192-73972211 Msa0374520:intron 60.0%
TGGGGAGGGGTTCTGTTGAC+TGG - chr3_1:73972205-73972224 Msa0374520:intron 60.0%
! GGGGAGGGGTTCTGTTGACT+GGG - chr3_1:73972206-73972225 Msa0374520:intron 60.0%
GGTGGTCGGGGTTTGAACCA+CGG - chr3_1:73972817-73972836 Msa0374520:intron 60.0%
CCCAGCAATGCAAACCCACG+TGG - chr3_1:73975582-73975601 Msa0374520:intron 60.0%
CCCCTCCCCATACAGGGATG+TGG + chr3_1:73972195-73972214 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 73970015 73975702 73970015 ID=Msa0374520;Name=Msa0374520
chr3_1 mRNA 73970015 73975702 73970015 ID=Msa0374520-mRNA-1;Parent=Msa0374520;Name=Msa0374520-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|13|0|542
chr3_1 exon 73975592 73975702 73975592 ID=Msa0374520-mRNA-1:exon:16971;Parent=Msa0374520-mRNA-1
chr3_1 exon 73975352 73975430 73975352 ID=Msa0374520-mRNA-1:exon:16970;Parent=Msa0374520-mRNA-1
chr3_1 exon 73974994 73975034 73974994 ID=Msa0374520-mRNA-1:exon:16969;Parent=Msa0374520-mRNA-1
chr3_1 exon 73974792 73974870 73974792 ID=Msa0374520-mRNA-1:exon:16968;Parent=Msa0374520-mRNA-1
chr3_1 exon 73974288 73974392 73974288 ID=Msa0374520-mRNA-1:exon:16967;Parent=Msa0374520-mRNA-1
chr3_1 exon 73973450 73973559 73973450 ID=Msa0374520-mRNA-1:exon:16966;Parent=Msa0374520-mRNA-1
chr3_1 exon 73971626 73971807 73971626 ID=Msa0374520-mRNA-1:exon:16965;Parent=Msa0374520-mRNA-1
chr3_1 exon 73971398 73971467 73971398 ID=Msa0374520-mRNA-1:exon:16964;Parent=Msa0374520-mRNA-1
chr3_1 exon 73971104 73971277 73971104 ID=Msa0374520-mRNA-1:exon:16963;Parent=Msa0374520-mRNA-1
chr3_1 exon 73970890 73970994 73970890 ID=Msa0374520-mRNA-1:exon:16962;Parent=Msa0374520-mRNA-1
chr3_1 exon 73970656 73970787 73970656 ID=Msa0374520-mRNA-1:exon:16961;Parent=Msa0374520-mRNA-1
chr3_1 exon 73970463 73970558 73970463 ID=Msa0374520-mRNA-1:exon:16960;Parent=Msa0374520-mRNA-1
chr3_1 exon 73970015 73970359 73970015 ID=Msa0374520-mRNA-1:exon:16959;Parent=Msa0374520-mRNA-1
chr3_1 CDS 73975592 73975702 73975592 ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1 CDS 73975352 73975430 73975352 ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1 CDS 73974994 73975034 73974994 ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1 CDS 73974792 73974870 73974792 ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1 CDS 73974288 73974392 73974288 ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1 CDS 73973450 73973559 73973450 ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1 CDS 73971626 73971807 73971626 ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1 CDS 73971398 73971467 73971398 ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1 CDS 73971104 73971277 73971104 ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1 CDS 73970890 73970994 73970890 ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1 CDS 73970656 73970787 73970656 ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1 CDS 73970463 73970558 73970463 ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
chr3_1 CDS 73970015 73970359 73970015 ID=Msa0374520-mRNA-1:cds;Parent=Msa0374520-mRNA-1
Gene Sequence

>Msa0374520

ATGGCACATCAAGAAGTGAATAATGGTAGCAACAACCGTATAGTAGCCGTTAATGTGACCCCTTCTGGCACACCTCCTTATAACCATGATGATTCCTCAAAGCAAGATCAGAAACCAGGATGGAAGAAGTTCTTGGCATATGTAGGTCCTGGTTTTCTTGTCTCCTTGGCCTACCTTGATCCCGGAAATATGGAAACTGATTTGCAAGCTGGAGCTAACCACGGATATGAGTTGTTGTGGATCATACTTATTGGACTCATATTTGCCTGCATAATTCAATCATTGGCTGCAAATCTTGGAGTGTGCACTGGAAAGCACCTTTCAGAAATTTGTAAAGCTGAGTACCCATGGTTTGTGAAATACTGCTTATGGATATTAGCAGAACTTGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGGACGGCCTTTGCACTAAACATACTATTCCACATCCCTGTATGGGGAGGGGTTCTGTTGACTGGGTGCAGCACTCTCTTGTTTTTGGGTCTACAAAGATTTGGGGTGAGGAAGTTGGAACTGCTGATTTCAATTCTAGTATTTGTAATGGCTGCATGTTTCTTTGGTGAATTGAGCTATGTAAAACCCCCTGCTAAAGGAGTAATTGAGGGAATGTTTGTTCCCAAACTCAGCGGAAATGGTGCTGTAGGCGATGCTATTGCCCTTTTGGGTGCCCTTATCATGCCGCACAATCTTTTCCTCCATTCTGCTCTAGTGCTATCTCGAAAAATACCTGGTACTAAGCGTGGCATCAATGATGCGTGCAGATACTTTCTCATTGAGAGTGGTTTCGCTCTGTTCGTTGCATTTCTAATCAATGTTGCAATGATTTCTGTGACTGGCACTGTTTGCAAAGCTGATGATATTTCTGGAGAGAATGCTGATCGTTGCAACGATATTACCCTTAACTCTGCTTCTTTCCTTCTCCAGAATGTGTTGGGACGTTCAAGCTCAACTATTTATGCCATAGCATTGCTAGCCTCAGGACAAAGTTCTGCCATCACTGGAACCTATGCAGGCCAGTTTATCATGCAGGGTTTCTTGGACTTAAAGATGAAAAAATGGATAAGGAACTTGGTGACTAGGATTGTTGCCATAGCACCAAGTCTAGTTGTATCTATCATTGGTGGTTCTTCTGGAGCTGGAAGACTCATTATCATTGCATCGATGATACTTTCTTTTGAGCTTCCATTCGCTTTAATTCCACTCCTTAAGTTTAGCAGCAGCAGGACCAAGATGGGACCTCACAAGAATTCTATCATTATCATTATCATCTCATGGATACTGGGTTTGGGAATCATTGGAATCAATGTGTACTACCTCATTACTGCTTTTGTGGGTTGGATAATTCATAACAGTCTACCAAAGGTGGCAAATGTGTTCATCGGGCTCATTGTGTTTCCTCTAATGGCACTGTATATCGTCTCAGTTATCTATCTAACATTCAGAAAAGACACTGTTGTAACGTTTGTGGAGGTTAAGGATGACCCAGCAATGCAAACCCACGTGGAAAAGGGGTTCGTAAACGATGGTCAGTTAGAGTTGAGTTATACTCCTTATAGAGAAGATTTAGCTGATATCACTCGACCAGAGGGACTTAGGTTGTGA

Protein sequence

>Msa0374520

MAHQEVNNGSNNRIVAVNVTPSGTPPYNHDDSSKQDQKPGWKKFLAYVGPGFLVSLAYLDPGNMETDLQAGANHGYELLWIILIGLIFACIIQSLAANLGVCTGKHLSEICKAEYPWFVKYCLWILAELAVIAADIPEVIGTAFALNILFHIPVWGGVLLTGCSTLLFLGLQRFGVRKLELLISILVFVMAACFFGELSYVKPPAKGVIEGMFVPKLSGNGAVGDAIALLGALIMPHNLFLHSALVLSRKIPGTKRGINDACRYFLIESGFALFVAFLINVAMISVTGTVCKADDISGENADRCNDITLNSASFLLQNVLGRSSSTIYAIALLASGQSSAITGTYAGQFIMQGFLDLKMKKWIRNLVTRIVAIAPSLVVSIIGGSSGAGRLIIIASMILSFELPFALIPLLKFSSSRTKMGPHKNSIIIIIISWILGLGIIGINVYYLITAFVGWIIHNSLPKVANVFIGLIVFPLMALYIVSVIYLTFRKDTVVTFVEVKDDPAMQTHVEKGFVNDGQLELSYTPYREDLADITRPEGLRL*