AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0543740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0543740 MtrunA17_Chr4g0024121 97.222 324 9 0 1 324 3 326 0.0 659
Msa0543740 MtrunA17_Chr2g0322861 71.963 321 86 3 5 324 69 386 1.32e-175 491
Msa0543740 MtrunA17_Chr7g0268501 54.430 316 138 4 9 324 11 320 1.64e-121 352
Msa0543740 MtrunA17_Chr7g0268521 54.430 316 138 4 9 324 11 320 1.64e-121 352
Msa0543740 MtrunA17_Chr3g0128061 45.768 319 172 1 7 324 8 326 3.34e-97 290
Msa0543740 MtrunA17_Chr2g0292241 44.411 331 176 4 1 324 1 330 9.11e-94 282
Msa0543740 MtrunA17_Chr5g0402581 43.653 323 180 2 3 324 5 326 2.81e-93 280
Msa0543740 MtrunA17_Chr5g0402571 42.724 323 183 2 3 324 5 326 1.02e-92 278
Msa0543740 MtrunA17_Chr2g0292181 44.237 321 171 4 11 324 20 339 7.71e-91 275
Msa0543740 MtrunA17_Chr2g0292211 43.807 331 178 4 1 324 12 341 9.67e-91 275
Msa0543740 MtrunA17_Chr5g0404721 48.344 302 153 3 25 324 30 330 1.34e-90 273
Msa0543740 MtrunA17_Chr2g0279041 44.954 327 168 5 5 324 4 325 1.07e-89 271
Msa0543740 MtrunA17_Chr5g0405991 46.855 318 157 6 10 324 8 316 1.51e-89 270
Msa0543740 MtrunA17_Chr2g0292261 44.548 321 170 5 11 324 11 330 1.55e-89 271
Msa0543740 MtrunA17_Chr1g0204011 43.425 327 174 6 1 324 4 322 2.00e-89 270
Msa0543740 MtrunA17_Chr2g0299691 46.254 307 156 5 24 324 55 358 1.94e-88 269
Msa0543740 MtrunA17_Chr2g0291751 42.598 331 182 4 1 324 1 330 8.71e-88 267
Msa0543740 MtrunA17_Chr2g0292111 43.902 328 173 5 7 324 4 330 1.37e-87 266
Msa0543740 MtrunA17_Chr8g0371381 44.918 305 162 4 20 324 21 319 3.16e-87 264
Msa0543740 MtrunA17_Chr7g0258811 41.463 328 187 4 1 324 45 371 4.17e-87 266
Msa0543740 MtrunA17_Chr2g0292251 45.130 308 165 3 20 324 23 329 7.54e-87 265
Msa0543740 MtrunA17_Chr1g0175561 41.049 324 186 4 5 324 4 326 1.07e-86 263
Msa0543740 MtrunA17_Chr2g0292091 42.813 327 182 5 1 324 1 325 3.01e-86 263
Msa0543740 MtrunA17_Chr3g0129051 41.534 313 172 4 11 320 14 318 3.70e-86 262
Msa0543740 MtrunA17_Chr1g0188431 41.250 320 177 3 5 324 19 327 2.18e-85 260
Msa0543740 MtrunA17_Chr6g0477071 44.300 307 160 4 18 324 47 342 3.99e-85 260
Msa0543740 MtrunA17_Chr2g0292151 43.202 331 180 4 1 324 1 330 1.07e-84 259
Msa0543740 MtrunA17_Chr4g0070951 42.154 325 180 4 5 324 8 329 3.80e-84 257
Msa0543740 MtrunA17_Chr4g0063671 41.925 322 177 4 8 324 4 320 4.85e-84 256
Msa0543740 MtrunA17_Chr8g0372601 45.033 302 163 3 25 324 30 330 5.48e-84 256
Msa0543740 MtrunA17_Chr1g0164891 46.382 304 157 5 26 324 90 392 7.40e-84 258
Msa0543740 MtrunA17_Chr2g0292101 41.896 327 186 3 1 324 1 326 1.24e-82 253
Msa0543740 MtrunA17_Chr2g0292271 42.462 325 183 3 3 324 7 330 2.52e-82 253
Msa0543740 MtrunA17_Chr3g0114451 42.547 322 174 4 6 324 5 318 7.78e-82 251
Msa0543740 MtrunA17_Chr3g0106921 42.857 329 166 8 4 324 6 320 1.05e-81 250
Msa0543740 MtrunA17_Chr7g0254201 41.776 304 166 4 23 324 18 312 2.34e-81 249
Msa0543740 MtrunA17_Chr2g0320071 39.938 323 183 4 5 324 3 317 4.40e-80 246
Msa0543740 MtrunA17_Chr6g0460711 40.498 321 179 5 8 324 2 314 7.06e-80 246
Msa0543740 MtrunA17_Chr2g0292291 42.547 322 176 6 11 324 12 332 7.30e-80 247
Msa0543740 MtrunA17_Chr2g0320101 40.000 320 181 4 6 324 8 317 1.08e-79 245
Msa0543740 MtrunA17_Chr1g0157051 41.009 317 178 4 9 323 8 317 1.20e-79 245
Msa0543740 MtrunA17_Chr1g0194151 40.498 321 185 4 9 324 14 333 1.62e-79 245
Msa0543740 MtrunA17_Chr5g0432441 40.938 320 176 5 10 324 15 326 1.64e-79 245
Msa0543740 MtrunA17_Chr8g0364291 39.748 317 186 4 11 324 10 324 1.80e-79 245
Msa0543740 MtrunA17_Chr7g0244461 38.679 318 186 3 8 324 3 312 1.04e-78 242
Msa0543740 MtrunA17_Chr7g0244451 40.252 318 181 3 8 324 7 316 2.22e-78 241
Msa0543740 MtrunA17_Chr1g0194271 38.415 328 189 4 9 324 14 340 2.88e-78 242
Msa0543740 MtrunA17_Chr7g0225221 41.456 316 177 4 11 324 11 320 5.54e-78 241
Msa0543740 MtrunA17_Chr4g0013171 39.818 329 185 6 1 324 1 321 9.40e-78 240
Msa0543740 MtrunA17_Chr2g0296621 45.215 303 152 7 25 324 50 341 1.38e-77 241
Msa0543740 MtrunA17_Chr4g0013191 38.806 335 178 5 10 324 13 340 2.28e-77 240
Msa0543740 MtrunA17_Chr2g0320061 41.694 307 169 4 20 324 20 318 6.72e-77 238
Msa0543740 MtrunA17_Chr4g0043391 39.264 326 183 6 7 324 6 324 7.88e-77 238
Msa0543740 MtrunA17_Chr1g0213061 40.625 320 175 7 9 324 13 321 1.61e-76 237
Msa0543740 MtrunA17_Chr4g0046131 42.105 304 169 5 24 321 41 343 2.20e-76 238
Msa0543740 MtrunA17_Chr3g0129061 40.635 315 176 4 9 320 12 318 2.69e-76 236
Msa0543740 MtrunA17_Chr7g0254231 40.066 302 171 4 23 324 20 311 4.10e-76 236
Msa0543740 MtrunA17_Chr4g0013201 37.126 334 183 4 10 324 13 338 4.64e-76 236
Msa0543740 MtrunA17_Chr2g0320051 41.694 307 169 4 20 324 20 318 1.73e-75 234
Msa0543740 MtrunA17_Chr5g0401431 40.439 319 185 2 9 323 11 328 2.60e-75 234
Msa0543740 MtrunA17_Chr4g0038161 40.000 320 179 5 10 324 9 320 2.74e-75 234
Msa0543740 MtrunA17_Chr5g0432341 40.606 330 181 8 1 324 1 321 3.06e-75 234
Msa0543740 MtrunA17_Chr5g0438021 40.187 321 179 4 10 324 12 325 3.40e-75 234
Msa0543740 MtrunA17_Chr4g0038171 40.000 320 180 5 10 324 9 321 3.70e-75 234
Msa0543740 MtrunA17_Chr5g0432351 40.303 330 182 8 1 324 1 321 6.05e-75 233
Msa0543740 MtrunA17_Chr2g0320091 39.688 320 183 3 6 324 8 318 6.33e-75 233
Msa0543740 MtrunA17_Chr4g0013721 39.935 308 180 4 18 324 93 396 1.37e-74 235
Msa0543740 MtrunA17_Chr4g0068621 41.368 307 173 5 21 324 34 336 1.60e-74 233
Msa0543740 MtrunA17_Chr4g0038151 40.000 320 180 5 9 324 10 321 1.61e-74 232
Msa0543740 MtrunA17_Chr5g0400331 43.046 302 166 4 29 324 30 331 5.31e-74 231
Msa0543740 MtrunA17_Chr1g0155611 42.244 303 171 3 25 324 46 347 3.15e-73 229
Msa0543740 MtrunA17_Chr4g0013181 40.468 299 167 5 29 324 63 353 3.59e-73 229
Msa0543740 MtrunA17_Chr4g0053871 40.881 318 176 4 10 323 14 323 3.73e-73 228
Msa0543740 MtrunA17_Chr3g0129041 39.812 319 181 4 9 324 12 322 1.49e-72 227
Msa0543740 MtrunA17_Chr4g0013821 38.689 305 182 4 21 324 24 324 2.65e-72 227
Msa0543740 MtrunA17_Chr1g0148021 41.515 330 185 5 1 324 1 328 2.80e-72 226
Msa0543740 MtrunA17_Chr1g0197411 37.461 323 196 5 7 324 9 330 5.04e-72 226
Msa0543740 MtrunA17_Chr2g0320031 38.006 321 189 4 6 324 7 319 9.74e-72 225
Msa0543740 MtrunA17_Chr4g0076211 41.611 298 165 5 28 324 44 333 1.30e-71 225
Msa0543740 MtrunA17_Chr2g0278671 40.385 312 176 5 18 324 17 323 2.15e-69 219
Msa0543740 MtrunA17_Chr2g0279061 45.769 260 132 4 69 324 12 266 2.15e-69 217
Msa0543740 MtrunA17_Chr4g0072091 40.134 299 175 3 24 320 23 319 3.73e-69 218
Msa0543740 MtrunA17_Chr7g0224371 38.730 315 183 4 11 324 17 322 7.86e-69 218
Msa0543740 MtrunA17_Chr3g0107881 40.729 329 176 9 4 324 7 324 9.11e-69 217
Msa0543740 MtrunA17_Chr5g0421411 40.925 281 157 7 51 324 7 285 1.14e-68 216
Msa0543740 MtrunA17_Chr5g0432331 37.879 330 190 8 1 324 32 352 2.64e-68 217
Msa0543740 MtrunA17_Chr3g0106901 38.291 316 186 3 10 324 16 323 4.82e-68 215
Msa0543740 MtrunA17_Chr6g0467251 35.366 328 194 6 2 320 6 324 8.22e-66 210
Msa0543740 MtrunA17_Chr3g0136751 38.253 332 182 6 3 324 4 322 1.35e-65 209
Msa0543740 MtrunA17_Chr2g0329641 38.037 326 189 6 7 324 15 335 9.03e-65 207
Msa0543740 MtrunA17_Chr2g0316481 37.764 331 173 7 23 321 74 403 2.24e-62 203
Msa0543740 MtrunA17_Chr6g0451571 36.562 320 194 6 10 324 19 334 4.45e-62 200
Msa0543740 MtrunA17_Chr6g0467121 37.126 334 184 7 5 324 42 363 1.21e-61 201
Msa0543740 MtrunA17_Chr6g0467161 35.404 322 192 7 9 324 25 336 1.88e-61 199
Msa0543740 MtrunA17_Chr4g0074851 36.455 299 183 2 28 324 35 328 1.91e-61 199
Msa0543740 MtrunA17_Chr2g0316791 36.858 331 176 6 23 321 74 403 2.04e-61 201
Msa0543740 MtrunA17_Chr2g0316831 35.952 331 179 6 23 321 110 439 5.00e-61 201
Msa0543740 MtrunA17_Chr2g0316191 36.145 332 178 6 23 321 74 404 8.40e-60 197
Msa0543740 MtrunA17_Chr2g0311251 35.435 333 181 6 23 323 9 339 3.29e-59 193
Msa0543740 MtrunA17_Chr1g0181511 36.482 307 182 5 23 324 25 323 4.62e-59 192
Msa0543740 MtrunA17_Chr1g0181431 35.599 309 182 6 23 324 25 323 2.64e-57 188
Msa0543740 MtrunA17_Chr1g0181481 34.426 305 191 3 23 324 25 323 1.11e-56 186
Msa0543740 MtrunA17_Chr4g0075241 33.956 321 201 4 9 324 13 327 1.48e-55 183
Msa0543740 MtrunA17_Chr2g0311241 31.989 372 178 6 23 321 58 427 1.97e-55 186
Msa0543740 MtrunA17_Chr5g0413051 35.256 312 195 5 19 324 67 377 1.45e-54 182
Msa0543740 MtrunA17_Chr2g0316811 40.541 222 115 2 23 227 48 269 1.51e-45 157
Msa0543740 MtrunA17_Chr4g0004591 31.546 317 157 5 25 321 77 353 8.91e-45 156
Msa0543740 MtrunA17_Chr5g0432401 32.508 323 164 7 4 320 8 282 4.70e-42 147
Msa0543740 MtrunA17_Chr2g0292281 41.232 211 111 5 116 324 17 216 1.83e-41 144
Msa0543740 MtrunA17_Chr2g0316141 32.509 283 141 6 71 321 11 275 7.94e-38 135
Msa0543740 MtrunA17_Chr2g0316181 32.509 283 141 6 71 321 11 275 7.94e-38 135
Msa0543740 MtrunA17_Chr3g0114461 36.458 192 113 3 130 320 5 188 3.23e-34 124
Msa0543740 MtrunA17_Chr3g0114491 51.376 109 52 1 24 131 17 125 3.18e-29 109
Msa0543740 MtrunA17_Chr1g0181491 44.037 109 60 1 23 131 10 117 4.80e-26 101
Msa0543740 MtrunA17_Chr6g0468731 61.765 68 23 1 64 131 22 86 1.23e-22 90.1
Msa0543740 MtrunA17_Chr1g0196191 58.824 68 28 0 67 134 27 94 3.29e-20 85.9
Msa0543740 MtrunA17_Chr1g0181501 29.897 194 126 4 134 324 3 189 2.52e-19 84.3
Msa0543740 MtrunA17_Chr7g0254181 37.500 120 71 2 72 190 6 122 2.44e-18 80.9
Msa0543740 MtrunA17_Chr7g0268491 45.122 82 44 1 243 324 17 97 2.75e-18 79.0
Msa0543740 MtrunA17_Chr5g0432321 36.800 125 70 3 145 269 17 132 4.49e-18 79.3
Msa0543740 MtrunA17_Chr4g0013811 47.945 73 38 0 135 207 6 78 3.58e-17 75.1
Msa0543740 MtrunA17_Chr7g0254171 36.752 117 67 2 70 179 3 119 3.51e-15 71.6
Msa0543740 MtrunA17_Chr2g0316771 25.824 182 106 3 171 323 4 185 3.02e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0543740 AT4G11290.1 61.682 321 115 3 9 324 9 326 2.91e-146 415
Msa0543740 AT1G05260.1 62.179 312 116 2 14 324 15 325 5.89e-145 412
Msa0543740 AT3G21770.1 59.547 309 123 2 14 321 18 325 1.94e-135 388
Msa0543740 AT5G15180.1 53.750 320 143 5 7 324 13 329 4.82e-120 348
Msa0543740 AT3G01190.1 52.648 321 143 6 8 324 6 321 8.78e-114 332
Msa0543740 AT1G05240.1 49.669 302 140 5 29 324 30 325 6.01e-103 305
Msa0543740 AT1G05250.1 49.669 302 140 5 29 324 30 325 6.01e-103 305
Msa0543740 AT2G18150.1 44.156 308 169 3 19 324 30 336 4.57e-90 273
Msa0543740 AT2G39040.1 46.645 313 158 7 19 324 40 350 2.30e-87 266
Msa0543740 AT5G51890.1 42.006 319 174 5 10 324 11 322 1.21e-86 263
Msa0543740 AT5G19890.1 43.161 329 173 7 1 324 8 327 2.45e-86 263
Msa0543740 AT4G33420.1 43.218 317 167 5 10 324 20 325 5.37e-86 262
Msa0543740 AT2G18140.1 43.077 325 181 4 3 324 12 335 6.28e-86 262
Msa0543740 AT4G36430.1 42.138 318 178 4 12 324 14 330 2.00e-85 261
Msa0543740 AT5G17820.1 42.357 314 171 4 11 324 10 313 2.60e-85 259
Msa0543740 AT3G03670.1 40.881 318 186 2 7 324 6 321 4.06e-85 259
Msa0543740 AT4G33420.2 43.218 317 167 5 10 324 67 372 4.12e-85 261
Msa0543740 AT2G41480.1 42.331 326 176 6 6 324 8 328 4.39e-85 259
Msa0543740 AT5G64120.1 41.018 334 181 6 1 324 1 328 8.51e-85 259
Msa0543740 AT3G32980.1 42.587 317 176 4 13 324 19 334 9.20e-85 259
Msa0543740 AT5G14130.1 41.509 318 179 5 10 324 17 330 9.67e-85 259
Msa0543740 AT5G39580.1 42.073 328 177 7 1 324 1 319 2.10e-84 258
Msa0543740 AT5G42180.1 42.122 311 175 3 10 320 8 313 2.40e-84 257
Msa0543740 AT5G17820.2 42.357 314 171 4 11 324 63 366 3.03e-84 259
Msa0543740 AT5G14130.2 41.509 318 179 5 10 324 58 371 4.37e-84 258
Msa0543740 AT2G38390.1 40.312 320 186 4 9 324 15 333 9.51e-84 257
Msa0543740 AT5G06720.1 40.566 318 185 3 10 324 17 333 9.98e-84 256
Msa0543740 AT3G50990.1 45.928 307 163 3 20 324 36 341 1.05e-83 256
Msa0543740 AT2G38380.1 40.938 320 184 4 9 324 15 333 3.60e-83 255
Msa0543740 AT4G08770.1 42.718 309 171 4 21 324 20 327 1.03e-82 254
Msa0543740 AT5G66390.1 43.175 315 176 3 12 324 20 333 1.94e-82 253
Msa0543740 AT3G49110.1 41.846 325 181 5 7 324 13 336 7.89e-82 252
Msa0543740 AT5G06730.1 39.308 318 189 4 10 324 18 334 1.56e-81 251
Msa0543740 AT3G49120.1 41.640 317 179 4 13 324 20 335 3.23e-81 251
Msa0543740 AT1G14550.1 41.121 321 179 5 7 324 8 321 3.34e-79 244
Msa0543740 AT2G24800.1 41.311 305 172 3 23 324 29 329 5.96e-79 244
Msa0543740 AT4G37530.1 41.801 311 176 2 18 324 20 329 3.19e-78 242
Msa0543740 AT5G64100.1 42.667 300 161 5 28 324 40 331 4.35e-78 242
Msa0543740 AT1G71695.1 43.564 303 161 5 25 324 44 339 6.67e-78 242
Msa0543740 AT4G08780.1 41.424 309 175 4 21 324 20 327 5.10e-77 239
Msa0543740 AT1G44970.1 42.122 311 176 3 17 324 37 346 7.37e-77 239
Msa0543740 AT1G49570.1 41.447 304 173 4 23 322 46 348 7.61e-77 239
Msa0543740 AT2G18980.1 42.553 329 178 5 1 324 1 323 1.07e-76 238
Msa0543740 AT1G14540.1 39.375 320 184 5 7 324 4 315 5.01e-75 233
Msa0543740 AT5G05340.1 40.656 305 172 3 22 324 27 324 5.24e-75 234
Msa0543740 AT4G31760.1 39.623 318 183 5 10 324 15 326 9.55e-75 233
Msa0543740 AT5G19880.1 38.788 330 195 5 1 324 1 329 1.43e-74 233
Msa0543740 AT4G26010.1 39.873 316 174 6 10 324 9 309 2.68e-74 231
Msa0543740 AT4G16270.1 42.000 300 167 6 28 324 53 348 3.99e-74 232
Msa0543740 AT4G26010.2 39.873 316 174 6 10 324 37 337 4.39e-74 232
Msa0543740 AT4G37520.1 40.523 306 177 2 23 324 25 329 1.32e-73 230
Msa0543740 AT1G77100.1 41.346 312 169 6 18 324 17 319 1.62e-73 229
Msa0543740 AT5G64110.1 40.000 300 171 4 28 324 37 330 3.94e-73 229
Msa0543740 AT4G25980.1 39.252 321 185 5 10 324 10 326 4.20e-73 229
Msa0543740 AT5G58400.1 41.401 314 175 5 10 320 14 321 4.26e-73 229
Msa0543740 AT2G35380.1 40.000 330 176 5 9 324 14 335 7.48e-73 228
Msa0543740 AT2G22420.1 37.539 317 192 5 9 324 8 319 1.91e-72 227
Msa0543740 AT3G49960.1 40.432 324 184 4 9 324 7 329 6.07e-72 226
Msa0543740 AT4G37520.2 40.523 306 174 3 23 324 25 326 2.63e-71 224
Msa0543740 AT5G67400.1 40.129 309 180 2 20 324 22 329 8.93e-71 223
Msa0543740 AT5G22410.1 40.063 317 178 7 9 320 12 321 4.89e-70 221
Msa0543740 AT4G17690.1 37.821 312 185 4 16 324 17 322 8.07e-70 220
Msa0543740 AT4G33870.1 36.280 328 173 3 29 321 72 398 1.04e-69 223
Msa0543740 AT1G68850.1 38.411 302 180 4 29 324 34 335 1.05e-69 220
Msa0543740 AT1G34510.1 38.608 316 178 6 10 324 9 309 1.36e-69 219
Msa0543740 AT5G58390.1 38.941 321 179 6 7 320 2 312 2.58e-69 219
Msa0543740 AT4G37530.2 43.846 260 141 2 18 273 20 278 7.02e-68 214
Msa0543740 AT2G34060.1 38.816 304 181 3 22 320 39 342 7.43e-68 216
Msa0543740 AT4G30170.1 39.542 306 176 3 23 324 25 325 1.02e-67 215
Msa0543740 AT4G21960.1 36.036 333 198 6 1 324 1 327 1.05e-66 213
Msa0543740 AT1G30870.1 41.472 299 164 6 29 324 55 345 4.11e-66 211
Msa0543740 AT5G47000.1 37.231 325 187 7 9 324 14 330 1.97e-65 209
Msa0543740 AT5G40150.1 36.808 307 187 2 20 324 27 328 9.32e-64 205
Msa0543740 AT1G24110.1 35.443 316 194 4 12 320 6 318 2.58e-63 204
Msa0543740 AT2G43480.1 37.580 314 185 4 17 324 27 335 2.18e-62 201
Msa0543740 AT3G28200.1 35.831 307 189 2 20 324 16 316 1.57e-61 199
Msa0543740 AT5G24070.1 35.608 337 194 7 5 324 5 335 2.36e-61 199
Msa0543740 AT2G37130.1 33.876 307 193 4 22 324 27 327 6.12e-54 179
Msa0543740 AT2G37130.2 34.219 301 188 4 28 324 2 296 2.65e-53 177
Msa0543740 AT3G17070.1 32.733 333 200 7 3 320 12 335 6.79e-53 177
Msa0543740 AT2G35380.2 38.735 253 133 5 86 324 3 247 2.18e-49 165
Msa0543740 AT5G39580.2 44.279 201 102 4 1 198 1 194 2.80e-47 159
Msa0543740 AT4G25980.2 38.710 217 125 3 19 230 65 278 2.18e-45 156
Msa0543740 AT2G24800.2 44.910 167 89 1 23 189 29 192 2.66e-42 147
Msa0543740 AT3G17070.2 31.183 279 171 7 53 320 4 272 4.15e-39 139
Msa0543740 AT3G42570.1 33.962 106 69 1 87 191 44 149 4.26e-14 69.3

Find 54 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGACCTAGTCTTGCTTTC+TGG 0.177027 4_1:-30709253 Msa0543740:intron
ATTTGTCTTATAGCAATAAT+TGG 0.198586 4_1:-30710444 Msa0543740:CDS
ATTTGCAGGGTGGGCCTTAT+TGG 0.254925 4_1:-30709402 Msa0543740:intron
AAAACAATTTGTTCAGCTTT+GGG 0.265521 4_1:+30710375 None:intergenic
CAAAACAATTTGTTCAGCTT+TGG 0.265636 4_1:+30710374 None:intergenic
TAGCCTCGAAGTGTAAGATT+TGG 0.347680 4_1:+30709995 None:intergenic
GCATATTCACTGTCTAGATC+TGG 0.368904 4_1:+30708776 None:intergenic
GGAAGGTTCCAACAGGTAGA+AGG 0.383934 4_1:-30709381 Msa0543740:CDS
TCAAATGTATTACGACTTCC+AGG 0.390217 4_1:+30708689 None:intergenic
TCAAACCACACTTATTGAAA+TGG 0.390578 4_1:-30708714 Msa0543740:CDS
AGTCGTAATACATTTGATCT+TGG 0.396009 4_1:-30708683 Msa0543740:CDS
ACTGTCCTCCTAACACTCTT+TGG 0.396163 4_1:-30709295 Msa0543740:CDS
CAACATTGCCAAAGAGTGTT+AGG 0.396433 4_1:+30709287 None:intergenic
TAAGCAATGCAGCATCTGAT+TGG 0.403489 4_1:+30708624 None:intergenic
GGGCGAATTAATGTGAAGAT+TGG 0.423818 4_1:-30708512 Msa0543740:CDS
ATTTCAGGTGCACACACAAT+TGG 0.433140 4_1:-30708863 Msa0543740:intron
CTAACACTCTTTGGCAATGT+TGG 0.442479 4_1:-30709286 Msa0543740:CDS
ACAAACCAATCAAGCTGAAA+AGG 0.448336 4_1:-30710026 Msa0543740:CDS
CCTGTTGGAACCTTCCAATA+AGG 0.463341 4_1:+30709388 None:intergenic
ATTCCAAATCTTACACTTCG+AGG 0.467504 4_1:-30709998 Msa0543740:CDS
AGTTGAAATTGATGAGCAAT+GGG 0.471565 4_1:+30708835 None:intergenic
GGGAAGCCAGAGTTACTTCA+AGG 0.476148 4_1:-30710475 Msa0543740:CDS
TTAAAACCTTGAAGTAACTC+TGG 0.484915 4_1:+30710469 None:intergenic
GCAGGGTGGGCCTTATTGGA+AGG 0.485522 4_1:-30709398 Msa0543740:intron
GGCGAATTAATGTGAAGATT+GGG 0.488415 4_1:-30708511 Msa0543740:CDS
AATTCTTTATTGAATTTGGA+AGG 0.490814 4_1:-30708550 Msa0543740:CDS
CCTTATTGGAAGGTTCCAAC+AGG 0.506222 4_1:-30709388 Msa0543740:CDS
AGGACAGTGAGGTTGTGAAA+TGG 0.507765 4_1:+30709310 None:intergenic
TATTGAATTTGGAAGGTCCA+TGG 0.508717 4_1:-30708543 Msa0543740:CDS
CATATTCACTGTCTAGATCT+GGG 0.509349 4_1:+30708777 None:intergenic
ATACCTTGACAAAACAATCA+TGG 0.512809 4_1:+30710286 None:intergenic
AGCTGCTAGTGATGGTACAC+TGG 0.519920 4_1:+30710329 None:intergenic
AAGCAAGTAGTTAAGAGAAG+AGG 0.529799 4_1:-30708653 Msa0543740:CDS
ATGCCATCCCTTCTACCTGT+TGG 0.530808 4_1:+30709373 None:intergenic
TAGTTGAAATTGATGAGCAA+TGG 0.547185 4_1:+30708834 None:intergenic
GTGAGGTTGTGAAATGGAGC+AGG 0.547960 4_1:+30709316 None:intergenic
AATGAATACTTACAATAGCA+TGG 0.556770 4_1:+30709876 None:intergenic
GAAGGTTCCAACAGGTAGAA+GGG 0.566125 4_1:-30709380 Msa0543740:CDS
AATGTGAAGATTGGGACTGA+AGG 0.567412 4_1:-30708503 Msa0543740:CDS
ACTCATGCTCAATTGCAGCC+AGG 0.571279 4_1:-30710417 Msa0543740:CDS
AGGGTCCATTTCAATAAGTG+TGG 0.580715 4_1:+30708709 None:intergenic
ACACTTATTGAAATGGACCC+TGG 0.584876 4_1:-30708707 Msa0543740:CDS
ATTGCTCATCAATTTCAACT+AGG 0.585527 4_1:-30708832 Msa0543740:CDS
TCAGCACAAGAGACAACACC+AGG 0.593653 4_1:+30709929 None:intergenic
GTTCCAACAGGTAGAAGGGA+TGG 0.595922 4_1:-30709376 Msa0543740:CDS
AAACAATTTGTTCAGCTTTG+GGG 0.596812 4_1:+30710376 None:intergenic
ATGAGTGCAGCTGCTAGTGA+TGG 0.611781 4_1:+30710321 None:intergenic
GCATACCAGAAAGCAAGACT+AGG 0.628390 4_1:+30709248 None:intergenic
GGTTGTGAAATGGAGCAGGA+AGG 0.663275 4_1:+30709320 None:intergenic
CATTGCCAAAGAGTGTTAGG+AGG 0.665435 4_1:+30709290 None:intergenic
GCTGCTAGTGATGGTACACT+GGG 0.680818 4_1:+30710330 None:intergenic
AGAGTGTTAGGAGGACAGTG+AGG 0.689613 4_1:+30709299 None:intergenic
CAAATGTATTACGACTTCCA+GGG 0.691933 4_1:+30708690 None:intergenic
CAGCACAAGAGACAACACCA+GGG 0.782900 4_1:+30709930 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAATATTTTAAAGTGTTT+TGG + chr4_1:30709170-30709189 None:intergenic 15.0%
!!! CAAAACACTTTAAAATATTT+TGG - chr4_1:30709168-30709187 Msa0543740:intron 15.0%
!!! AATCTAAATTTTTTCTGATA+TGG - chr4_1:30709244-30709263 Msa0543740:intron 15.0%
!! TCAATTAGATAAATGTTATT+TGG - chr4_1:30709349-30709368 Msa0543740:CDS 15.0%
!! GTTTAGTATGTATAATTATT+TGG - chr4_1:30709466-30709485 Msa0543740:intron 15.0%
!!! ATAATTATTTGGTTTTTTAG+TGG - chr4_1:30709477-30709496 Msa0543740:intron 15.0%
!! GAAAAATTCTTTATTGAATT+TGG - chr4_1:30710392-30710411 Msa0543740:CDS 15.0%
!!! CAAAATATTTTAAAGTGTTT+TGG + chr4_1:30709170-30709189 None:intergenic 15.0%
!!! CAAAACACTTTAAAATATTT+TGG - chr4_1:30709168-30709187 Msa0543740:intron 15.0%
!!! AATCTAAATTTTTTCTGATA+TGG - chr4_1:30709244-30709263 Msa0543740:intron 15.0%
!! TCAATTAGATAAATGTTATT+TGG - chr4_1:30709349-30709368 Msa0543740:CDS 15.0%
!! GTTTAGTATGTATAATTATT+TGG - chr4_1:30709466-30709485 Msa0543740:intron 15.0%
!!! ATAATTATTTGGTTTTTTAG+TGG - chr4_1:30709477-30709496 Msa0543740:intron 15.0%
!! GAAAAATTCTTTATTGAATT+TGG - chr4_1:30710392-30710411 Msa0543740:CDS 15.0%
!! ATTTGTCTTATAGCAATAAT+TGG - chr4_1:30708502-30708521 Msa0543740:CDS 20.0%
!!! TCAAGGTATACTTTTTTTTT+TGG - chr4_1:30708674-30708693 Msa0543740:CDS 20.0%
!!! TTTTAGTATCTCATTTCTAT+AGG - chr4_1:30709103-30709122 Msa0543740:intron 20.0%
!!! AATATTTTAAAGTGTTTTGG+AGG + chr4_1:30709167-30709186 None:intergenic 20.0%
!! ATCAAAACTATCATTATTTC+AGG - chr4_1:30710068-30710087 Msa0543740:intron 20.0%
!! AATTCTTTATTGAATTTGGA+AGG - chr4_1:30710396-30710415 Msa0543740:CDS 20.0%
!! ATTTGTCTTATAGCAATAAT+TGG - chr4_1:30708502-30708521 Msa0543740:CDS 20.0%
!!! TCAAGGTATACTTTTTTTTT+TGG - chr4_1:30708674-30708693 Msa0543740:CDS 20.0%
!!! TTTTAGTATCTCATTTCTAT+AGG - chr4_1:30709103-30709122 Msa0543740:intron 20.0%
!!! AATATTTTAAAGTGTTTTGG+AGG + chr4_1:30709167-30709186 None:intergenic 20.0%
!! ATCAAAACTATCATTATTTC+AGG - chr4_1:30710068-30710087 Msa0543740:intron 20.0%
!! AATTCTTTATTGAATTTGGA+AGG - chr4_1:30710396-30710415 Msa0543740:CDS 20.0%
!! AAAACAATTTGTTCAGCTTT+GGG + chr4_1:30708574-30708593 None:intergenic 25.0%
!! TTATTATCTTGTTGTGAATG+TGG - chr4_1:30708845-30708864 Msa0543740:CDS 25.0%
! AATGAATACTTACAATAGCA+TGG + chr4_1:30709073-30709092 None:intergenic 25.0%
! CTGATATGGTGTATATATTT+AGG - chr4_1:30709258-30709277 Msa0543740:CDS 25.0%
!! AAATGTTATTTGGTTATGCA+TGG - chr4_1:30709359-30709378 Msa0543740:CDS 25.0%
!!! TTTAGTTTGTGTGTAGAATT+TGG + chr4_1:30709723-30709742 None:intergenic 25.0%
!! TTTTTAGACAGAAACACATA+CGG + chr4_1:30709817-30709836 None:intergenic 25.0%
! GTCTAAAAAAAACACTAACA+TGG - chr4_1:30709828-30709847 Msa0543740:intron 25.0%
!! ACTAGGCTATATAATTTTAC+TGG - chr4_1:30710131-30710150 Msa0543740:intron 25.0%
!! CTATATAATTTTACTGGCAA+GGG - chr4_1:30710137-30710156 Msa0543740:intron 25.0%
!! AAAACAATTTGTTCAGCTTT+GGG + chr4_1:30708574-30708593 None:intergenic 25.0%
!! TTATTATCTTGTTGTGAATG+TGG - chr4_1:30708845-30708864 Msa0543740:CDS 25.0%
! AATGAATACTTACAATAGCA+TGG + chr4_1:30709073-30709092 None:intergenic 25.0%
! CTGATATGGTGTATATATTT+AGG - chr4_1:30709258-30709277 Msa0543740:CDS 25.0%
!! AAATGTTATTTGGTTATGCA+TGG - chr4_1:30709359-30709378 Msa0543740:CDS 25.0%
!!! TTTAGTTTGTGTGTAGAATT+TGG + chr4_1:30709723-30709742 None:intergenic 25.0%
!! TTTTTAGACAGAAACACATA+CGG + chr4_1:30709817-30709836 None:intergenic 25.0%
! GTCTAAAAAAAACACTAACA+TGG - chr4_1:30709828-30709847 Msa0543740:intron 25.0%
!! ACTAGGCTATATAATTTTAC+TGG - chr4_1:30710131-30710150 Msa0543740:intron 25.0%
!! CTATATAATTTTACTGGCAA+GGG - chr4_1:30710137-30710156 Msa0543740:intron 25.0%
TTAAAACCTTGAAGTAACTC+TGG + chr4_1:30708480-30708499 None:intergenic 30.0%
! AAACAATTTGTTCAGCTTTG+GGG + chr4_1:30708573-30708592 None:intergenic 30.0%
! CAAAACAATTTGTTCAGCTT+TGG + chr4_1:30708575-30708594 None:intergenic 30.0%
!! TTTCCATGATTGTTTTGTCA+AGG - chr4_1:30708657-30708676 Msa0543740:CDS 30.0%
ATACCTTGACAAAACAATCA+TGG + chr4_1:30708663-30708682 None:intergenic 30.0%
!!! AGTGTTTTGGAGGTTTTTAT+GGG + chr4_1:30709157-30709176 None:intergenic 30.0%
!!! AAGTGTTTTGGAGGTTTTTA+TGG + chr4_1:30709158-30709177 None:intergenic 30.0%
! TTGGATTTTTGAATGTGAGT+TGG - chr4_1:30709187-30709206 Msa0543740:intron 30.0%
! TGGATTTTTGAATGTGAGTT+GGG - chr4_1:30709188-30709207 Msa0543740:intron 30.0%
AGTTGAAATTGATGAGCAAT+GGG + chr4_1:30710114-30710133 None:intergenic 30.0%
TAGTTGAAATTGATGAGCAA+TGG + chr4_1:30710115-30710134 None:intergenic 30.0%
ATTGCTCATCAATTTCAACT+AGG - chr4_1:30710114-30710133 Msa0543740:intron 30.0%
! GCTATATAATTTTACTGGCA+AGG - chr4_1:30710136-30710155 Msa0543740:intron 30.0%
TCAAACCACACTTATTGAAA+TGG - chr4_1:30710232-30710251 Msa0543740:intron 30.0%
AGTCGTAATACATTTGATCT+TGG - chr4_1:30710263-30710282 Msa0543740:intron 30.0%
TTAAAACCTTGAAGTAACTC+TGG + chr4_1:30708480-30708499 None:intergenic 30.0%
! AAACAATTTGTTCAGCTTTG+GGG + chr4_1:30708573-30708592 None:intergenic 30.0%
! CAAAACAATTTGTTCAGCTT+TGG + chr4_1:30708575-30708594 None:intergenic 30.0%
!! TTTCCATGATTGTTTTGTCA+AGG - chr4_1:30708657-30708676 Msa0543740:CDS 30.0%
ATACCTTGACAAAACAATCA+TGG + chr4_1:30708663-30708682 None:intergenic 30.0%
!!! AGTGTTTTGGAGGTTTTTAT+GGG + chr4_1:30709157-30709176 None:intergenic 30.0%
!!! AAGTGTTTTGGAGGTTTTTA+TGG + chr4_1:30709158-30709177 None:intergenic 30.0%
! TTGGATTTTTGAATGTGAGT+TGG - chr4_1:30709187-30709206 Msa0543740:intron 30.0%
! TGGATTTTTGAATGTGAGTT+GGG - chr4_1:30709188-30709207 Msa0543740:intron 30.0%
AGTTGAAATTGATGAGCAAT+GGG + chr4_1:30710114-30710133 None:intergenic 30.0%
TAGTTGAAATTGATGAGCAA+TGG + chr4_1:30710115-30710134 None:intergenic 30.0%
ATTGCTCATCAATTTCAACT+AGG - chr4_1:30710114-30710133 Msa0543740:intron 30.0%
! GCTATATAATTTTACTGGCA+AGG - chr4_1:30710136-30710155 Msa0543740:intron 30.0%
TCAAACCACACTTATTGAAA+TGG - chr4_1:30710232-30710251 Msa0543740:intron 30.0%
AGTCGTAATACATTTGATCT+TGG - chr4_1:30710263-30710282 Msa0543740:intron 30.0%
GAACTAACATCTGCATTTCA+GGG - chr4_1:30708867-30708886 Msa0543740:intron 35.0%
ACAAACCAATCAAGCTGAAA+AGG - chr4_1:30708920-30708939 Msa0543740:intron 35.0%
ATTCCAAATCTTACACTTCG+AGG - chr4_1:30708948-30708967 Msa0543740:intron 35.0%
! GGTTTTTATGGGATGAGAAA+AGG + chr4_1:30709146-30709165 None:intergenic 35.0%
ATCATGGCAGAACAAACAAA+TGG + chr4_1:30709516-30709535 None:intergenic 35.0%
ATGATTGACATGGATTTGCA+GGG - chr4_1:30709531-30709550 Msa0543740:intron 35.0%
TAGTAGAAAAACGGTTAGAC+GGG + chr4_1:30709786-30709805 None:intergenic 35.0%
GTAGTAGAAAAACGGTTAGA+CGG + chr4_1:30709787-30709806 None:intergenic 35.0%
! ATGTCTTCTATCTGAAGTGT+CGG - chr4_1:30710016-30710035 Msa0543740:CDS 35.0%
CATATTCACTGTCTAGATCT+GGG + chr4_1:30710172-30710191 None:intergenic 35.0%
CAAATGTATTACGACTTCCA+GGG + chr4_1:30710259-30710278 None:intergenic 35.0%
TCAAATGTATTACGACTTCC+AGG + chr4_1:30710260-30710279 None:intergenic 35.0%
AAGCAAGTAGTTAAGAGAAG+AGG - chr4_1:30710293-30710312 Msa0543740:CDS 35.0%
TATTGAATTTGGAAGGTCCA+TGG - chr4_1:30710403-30710422 Msa0543740:CDS 35.0%
GGCGAATTAATGTGAAGATT+GGG - chr4_1:30710435-30710454 Msa0543740:CDS 35.0%
GAACTAACATCTGCATTTCA+GGG - chr4_1:30708867-30708886 Msa0543740:intron 35.0%
ACAAACCAATCAAGCTGAAA+AGG - chr4_1:30708920-30708939 Msa0543740:intron 35.0%
ATTCCAAATCTTACACTTCG+AGG - chr4_1:30708948-30708967 Msa0543740:intron 35.0%
! GGTTTTTATGGGATGAGAAA+AGG + chr4_1:30709146-30709165 None:intergenic 35.0%
ATCATGGCAGAACAAACAAA+TGG + chr4_1:30709516-30709535 None:intergenic 35.0%
ATGATTGACATGGATTTGCA+GGG - chr4_1:30709531-30709550 Msa0543740:intron 35.0%
TAGTAGAAAAACGGTTAGAC+GGG + chr4_1:30709786-30709805 None:intergenic 35.0%
GTAGTAGAAAAACGGTTAGA+CGG + chr4_1:30709787-30709806 None:intergenic 35.0%
! ATGTCTTCTATCTGAAGTGT+CGG - chr4_1:30710016-30710035 Msa0543740:CDS 35.0%
CATATTCACTGTCTAGATCT+GGG + chr4_1:30710172-30710191 None:intergenic 35.0%
CAAATGTATTACGACTTCCA+GGG + chr4_1:30710259-30710278 None:intergenic 35.0%
TCAAATGTATTACGACTTCC+AGG + chr4_1:30710260-30710279 None:intergenic 35.0%
AAGCAAGTAGTTAAGAGAAG+AGG - chr4_1:30710293-30710312 Msa0543740:CDS 35.0%
TATTGAATTTGGAAGGTCCA+TGG - chr4_1:30710403-30710422 Msa0543740:CDS 35.0%
GGCGAATTAATGTGAAGATT+GGG - chr4_1:30710435-30710454 Msa0543740:CDS 35.0%
! CAGCTTTTAGCATAGAAACC+TGG + chr4_1:30708550-30708569 None:intergenic 40.0%
! ACGTCTTTCATCAGAAGTGT+CGG - chr4_1:30708797-30708816 Msa0543740:CDS 40.0%
GGAACTAACATCTGCATTTC+AGG - chr4_1:30708866-30708885 Msa0543740:intron 40.0%
! AGCATCCTTTTCAGCTTGAT+TGG + chr4_1:30708928-30708947 None:intergenic 40.0%
TAGCCTCGAAGTGTAAGATT+TGG + chr4_1:30708954-30708973 None:intergenic 40.0%
!!! CAGGGCATTCTTTTTCAACA+AGG + chr4_1:30709001-30709020 None:intergenic 40.0%
CTTGTTGAAAAAGAATGCCC+TGG - chr4_1:30708999-30709018 Msa0543740:intron 40.0%
TTGTTCTGCCATGATTGACA+TGG - chr4_1:30709521-30709540 Msa0543740:intron 40.0%
CTGCAAATCCATGTCAATCA+TGG + chr4_1:30709532-30709551 None:intergenic 40.0%
CATGATTGACATGGATTTGC+AGG - chr4_1:30709530-30709549 Msa0543740:intron 40.0%
!! CAACATTGCCAAAGAGTGTT+AGG + chr4_1:30709662-30709681 None:intergenic 40.0%
CTAACACTCTTTGGCAATGT+TGG - chr4_1:30709660-30709679 Msa0543740:intron 40.0%
!! AATGACCTAGTCTTGCTTTC+TGG - chr4_1:30709693-30709712 Msa0543740:intron 40.0%
GCGTTAGCGTAGTAGAAAAA+CGG + chr4_1:30709795-30709814 None:intergenic 40.0%
! ATTTCAGGTGCACACACAAT+TGG - chr4_1:30710083-30710102 Msa0543740:intron 40.0%
GCATATTCACTGTCTAGATC+TGG + chr4_1:30710173-30710192 None:intergenic 40.0%
AGGGTCCATTTCAATAAGTG+TGG + chr4_1:30710240-30710259 None:intergenic 40.0%
ACACTTATTGAAATGGACCC+TGG - chr4_1:30710239-30710258 Msa0543740:intron 40.0%
TAAGCAATGCAGCATCTGAT+TGG + chr4_1:30710325-30710344 None:intergenic 40.0%
TGGAAGGTCCATGGAAAAAA+TGG - chr4_1:30710412-30710431 Msa0543740:CDS 40.0%
GGAAGGTCCATGGAAAAAAT+GGG - chr4_1:30710413-30710432 Msa0543740:CDS 40.0%
GAAGGTCCATGGAAAAAATG+GGG - chr4_1:30710414-30710433 Msa0543740:CDS 40.0%
!!! AATTCGCCCCATTTTTTCCA+TGG + chr4_1:30710423-30710442 None:intergenic 40.0%
GGGCGAATTAATGTGAAGAT+TGG - chr4_1:30710434-30710453 Msa0543740:CDS 40.0%
AATGTGAAGATTGGGACTGA+AGG - chr4_1:30710443-30710462 Msa0543740:CDS 40.0%
! CAGCTTTTAGCATAGAAACC+TGG + chr4_1:30708550-30708569 None:intergenic 40.0%
! ACGTCTTTCATCAGAAGTGT+CGG - chr4_1:30708797-30708816 Msa0543740:CDS 40.0%
GGAACTAACATCTGCATTTC+AGG - chr4_1:30708866-30708885 Msa0543740:intron 40.0%
! AGCATCCTTTTCAGCTTGAT+TGG + chr4_1:30708928-30708947 None:intergenic 40.0%
TAGCCTCGAAGTGTAAGATT+TGG + chr4_1:30708954-30708973 None:intergenic 40.0%
!!! CAGGGCATTCTTTTTCAACA+AGG + chr4_1:30709001-30709020 None:intergenic 40.0%
CTTGTTGAAAAAGAATGCCC+TGG - chr4_1:30708999-30709018 Msa0543740:intron 40.0%
TTGTTCTGCCATGATTGACA+TGG - chr4_1:30709521-30709540 Msa0543740:intron 40.0%
CTGCAAATCCATGTCAATCA+TGG + chr4_1:30709532-30709551 None:intergenic 40.0%
CATGATTGACATGGATTTGC+AGG - chr4_1:30709530-30709549 Msa0543740:intron 40.0%
!! CAACATTGCCAAAGAGTGTT+AGG + chr4_1:30709662-30709681 None:intergenic 40.0%
CTAACACTCTTTGGCAATGT+TGG - chr4_1:30709660-30709679 Msa0543740:intron 40.0%
!! AATGACCTAGTCTTGCTTTC+TGG - chr4_1:30709693-30709712 Msa0543740:intron 40.0%
GCGTTAGCGTAGTAGAAAAA+CGG + chr4_1:30709795-30709814 None:intergenic 40.0%
! ATTTCAGGTGCACACACAAT+TGG - chr4_1:30710083-30710102 Msa0543740:intron 40.0%
GCATATTCACTGTCTAGATC+TGG + chr4_1:30710173-30710192 None:intergenic 40.0%
AGGGTCCATTTCAATAAGTG+TGG + chr4_1:30710240-30710259 None:intergenic 40.0%
ACACTTATTGAAATGGACCC+TGG - chr4_1:30710239-30710258 Msa0543740:intron 40.0%
TAAGCAATGCAGCATCTGAT+TGG + chr4_1:30710325-30710344 None:intergenic 40.0%
TGGAAGGTCCATGGAAAAAA+TGG - chr4_1:30710412-30710431 Msa0543740:CDS 40.0%
GGAAGGTCCATGGAAAAAAT+GGG - chr4_1:30710413-30710432 Msa0543740:CDS 40.0%
GAAGGTCCATGGAAAAAATG+GGG - chr4_1:30710414-30710433 Msa0543740:CDS 40.0%
!!! AATTCGCCCCATTTTTTCCA+TGG + chr4_1:30710423-30710442 None:intergenic 40.0%
GGGCGAATTAATGTGAAGAT+TGG - chr4_1:30710434-30710453 Msa0543740:CDS 40.0%
AATGTGAAGATTGGGACTGA+AGG - chr4_1:30710443-30710462 Msa0543740:CDS 40.0%
AAAGACGTGTCTGACATGTC+TGG + chr4_1:30708785-30708804 None:intergenic 45.0%
ATTGACATGGATTTGCAGGG+TGG - chr4_1:30709534-30709553 Msa0543740:intron 45.0%
TTGACATGGATTTGCAGGGT+GGG - chr4_1:30709535-30709554 Msa0543740:intron 45.0%
CCTGTTGGAACCTTCCAATA+AGG + chr4_1:30709561-30709580 None:intergenic 45.0%
CCTTATTGGAAGGTTCCAAC+AGG - chr4_1:30709558-30709577 Msa0543740:intron 45.0%
GAAGGTTCCAACAGGTAGAA+GGG - chr4_1:30709566-30709585 Msa0543740:intron 45.0%
AGGACAGTGAGGTTGTGAAA+TGG + chr4_1:30709639-30709658 None:intergenic 45.0%
ACTGTCCTCCTAACACTCTT+TGG - chr4_1:30709651-30709670 Msa0543740:intron 45.0%
!! CATTGCCAAAGAGTGTTAGG+AGG + chr4_1:30709659-30709678 None:intergenic 45.0%
GCATACCAGAAAGCAAGACT+AGG + chr4_1:30709701-30709720 None:intergenic 45.0%
AAAGACGTGTCTGACATGTC+TGG + chr4_1:30708785-30708804 None:intergenic 45.0%
ATTGACATGGATTTGCAGGG+TGG - chr4_1:30709534-30709553 Msa0543740:intron 45.0%
TTGACATGGATTTGCAGGGT+GGG - chr4_1:30709535-30709554 Msa0543740:intron 45.0%
CCTGTTGGAACCTTCCAATA+AGG + chr4_1:30709561-30709580 None:intergenic 45.0%
CCTTATTGGAAGGTTCCAAC+AGG - chr4_1:30709558-30709577 Msa0543740:intron 45.0%
GAAGGTTCCAACAGGTAGAA+GGG - chr4_1:30709566-30709585 Msa0543740:intron 45.0%
AGGACAGTGAGGTTGTGAAA+TGG + chr4_1:30709639-30709658 None:intergenic 45.0%
ACTGTCCTCCTAACACTCTT+TGG - chr4_1:30709651-30709670 Msa0543740:intron 45.0%
!! CATTGCCAAAGAGTGTTAGG+AGG + chr4_1:30709659-30709678 None:intergenic 45.0%
GCATACCAGAAAGCAAGACT+AGG + chr4_1:30709701-30709720 None:intergenic 45.0%
!!! TTATTTTCTTAAATTAATAT+TGG + chr4_1:30709889-30709908 None:intergenic 5.0%
!! TAATTTAAGAAAATAAAAAT+AGG - chr4_1:30709893-30709912 Msa0543740:CDS 5.0%
!!! TTATTTTCTTAAATTAATAT+TGG + chr4_1:30709889-30709908 None:intergenic 5.0%
!! TAATTTAAGAAAATAAAAAT+AGG - chr4_1:30709893-30709912 Msa0543740:CDS 5.0%
GGGAAGCCAGAGTTACTTCA+AGG - chr4_1:30708471-30708490 Msa0543740:CDS 50.0%
ACTCATGCTCAATTGCAGCC+AGG - chr4_1:30708529-30708548 Msa0543740:CDS 50.0%
GCTGCTAGTGATGGTACACT+GGG + chr4_1:30708619-30708638 None:intergenic 50.0%
AGCTGCTAGTGATGGTACAC+TGG + chr4_1:30708620-30708639 None:intergenic 50.0%
ATGAGTGCAGCTGCTAGTGA+TGG + chr4_1:30708628-30708647 None:intergenic 50.0%
ATCCGACACAAAGACGTGTC+TGG - chr4_1:30708743-30708762 Msa0543740:CDS 50.0%
CACCAGACACGTCTTTGTGT+CGG + chr4_1:30708748-30708767 None:intergenic 50.0%
CAGCACAAGAGACAACACCA+GGG + chr4_1:30709019-30709038 None:intergenic 50.0%
TCAGCACAAGAGACAACACC+AGG + chr4_1:30709020-30709039 None:intergenic 50.0%
! ATTTGCAGGGTGGGCCTTAT+TGG - chr4_1:30709544-30709563 Msa0543740:intron 50.0%
GGAAGGTTCCAACAGGTAGA+AGG - chr4_1:30709565-30709584 Msa0543740:intron 50.0%
GTTCCAACAGGTAGAAGGGA+TGG - chr4_1:30709570-30709589 Msa0543740:intron 50.0%
ATGCCATCCCTTCTACCTGT+TGG + chr4_1:30709576-30709595 None:intergenic 50.0%
GGTTGTGAAATGGAGCAGGA+AGG + chr4_1:30709629-30709648 None:intergenic 50.0%
GTGAGGTTGTGAAATGGAGC+AGG + chr4_1:30709633-30709652 None:intergenic 50.0%
! AGAGTGTTAGGAGGACAGTG+AGG + chr4_1:30709650-30709669 None:intergenic 50.0%
AAAAACGGTTAGACGGGCAC+GGG + chr4_1:30709780-30709799 None:intergenic 50.0%
GAAAAACGGTTAGACGGGCA+CGG + chr4_1:30709781-30709800 None:intergenic 50.0%
GGGAAGCCAGAGTTACTTCA+AGG - chr4_1:30708471-30708490 Msa0543740:CDS 50.0%
ACTCATGCTCAATTGCAGCC+AGG - chr4_1:30708529-30708548 Msa0543740:CDS 50.0%
GCTGCTAGTGATGGTACACT+GGG + chr4_1:30708619-30708638 None:intergenic 50.0%
AGCTGCTAGTGATGGTACAC+TGG + chr4_1:30708620-30708639 None:intergenic 50.0%
ATGAGTGCAGCTGCTAGTGA+TGG + chr4_1:30708628-30708647 None:intergenic 50.0%
ATCCGACACAAAGACGTGTC+TGG - chr4_1:30708743-30708762 Msa0543740:CDS 50.0%
CACCAGACACGTCTTTGTGT+CGG + chr4_1:30708748-30708767 None:intergenic 50.0%
CAGCACAAGAGACAACACCA+GGG + chr4_1:30709019-30709038 None:intergenic 50.0%
TCAGCACAAGAGACAACACC+AGG + chr4_1:30709020-30709039 None:intergenic 50.0%
! ATTTGCAGGGTGGGCCTTAT+TGG - chr4_1:30709544-30709563 Msa0543740:intron 50.0%
GGAAGGTTCCAACAGGTAGA+AGG - chr4_1:30709565-30709584 Msa0543740:intron 50.0%
GTTCCAACAGGTAGAAGGGA+TGG - chr4_1:30709570-30709589 Msa0543740:intron 50.0%
ATGCCATCCCTTCTACCTGT+TGG + chr4_1:30709576-30709595 None:intergenic 50.0%
GGTTGTGAAATGGAGCAGGA+AGG + chr4_1:30709629-30709648 None:intergenic 50.0%
GTGAGGTTGTGAAATGGAGC+AGG + chr4_1:30709633-30709652 None:intergenic 50.0%
! AGAGTGTTAGGAGGACAGTG+AGG + chr4_1:30709650-30709669 None:intergenic 50.0%
AAAAACGGTTAGACGGGCAC+GGG + chr4_1:30709780-30709799 None:intergenic 50.0%
GAAAAACGGTTAGACGGGCA+CGG + chr4_1:30709781-30709800 None:intergenic 50.0%
TGGGCGCGCGAGAAATTCAT+AGG - chr4_1:30709207-30709226 Msa0543740:intron 55.0%
GGGCGCGCGAGAAATTCATA+GGG - chr4_1:30709208-30709227 Msa0543740:intron 55.0%
TGGGCGCGCGAGAAATTCAT+AGG - chr4_1:30709207-30709226 Msa0543740:intron 55.0%
GGGCGCGCGAGAAATTCATA+GGG - chr4_1:30709208-30709227 Msa0543740:intron 55.0%
!! GCAGGGTGGGCCTTATTGGA+AGG - chr4_1:30709548-30709567 Msa0543740:intron 60.0%
! TTAGACGGGCACGGGAGTGT+CGG + chr4_1:30709772-30709791 None:intergenic 60.0%
!! GCAGGGTGGGCCTTATTGGA+AGG - chr4_1:30709548-30709567 Msa0543740:intron 60.0%
! TTAGACGGGCACGGGAGTGT+CGG + chr4_1:30709772-30709791 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 30708469 30710499 30708469 ID=Msa0543740;Name=Msa0543740
chr4_1 mRNA 30708469 30710499 30708469 ID=Msa0543740-mRNA-1;Parent=Msa0543740;Name=Msa0543740-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|4|0|324
chr4_1 exon 30710290 30710499 30710290 ID=Msa0543740-mRNA-1:exon:8063;Parent=Msa0543740-mRNA-1
chr4_1 exon 30709889 30710080 30709889 ID=Msa0543740-mRNA-1:exon:8062;Parent=Msa0543740-mRNA-1
chr4_1 exon 30709254 30709416 30709254 ID=Msa0543740-mRNA-1:exon:8061;Parent=Msa0543740-mRNA-1
chr4_1 exon 30708469 30708878 30708469 ID=Msa0543740-mRNA-1:exon:8060;Parent=Msa0543740-mRNA-1
chr4_1 CDS 30710290 30710499 30710290 ID=Msa0543740-mRNA-1:cds;Parent=Msa0543740-mRNA-1
chr4_1 CDS 30709889 30710080 30709889 ID=Msa0543740-mRNA-1:cds;Parent=Msa0543740-mRNA-1
chr4_1 CDS 30709254 30709416 30709254 ID=Msa0543740-mRNA-1:cds;Parent=Msa0543740-mRNA-1
chr4_1 CDS 30708469 30708878 30708469 ID=Msa0543740-mRNA-1:cds;Parent=Msa0543740-mRNA-1
Gene Sequence

>Msa0543740

ATGGGAAGCCAGAGTTACTTCAAGGTTTTAATTATTTGTCTTATAGCAATAATTGGATCAACTCATGCTCAATTGCAGCCAGGTTTCTATGCTAAAAGCTGCCCCAAAGCTGAACAAATTGTTTTGAAGTATGTTCATGAACACATTCCCAGTGTACCATCACTAGCAGCTGCACTCATAAGACTACATTTCCATGATTGTTTTGTCAAGGGATGTGATGCATCTGTACTTCTTAACTCAACACAAACCAATCAAGCTGAAAAGGATGCTATTCCAAATCTTACACTTCGAGGCTATGAATTCATTGACACAATAAAGAGCCTTGTTGAAAAAGAATGCCCTGGTGTTGTCTCTTGTGCTGATATTTTGACTTTGACTGCTAGAGACTCTATCCATGCTATTGGTGGGCCTTATTGGAAGGTTCCAACAGGTAGAAGGGATGGCATCATATCTAAATCAGCAGATACTTTTACTAGCCTTCCTGCTCCATTTCACAACCTCACTGTCCTCCTAACACTCTTTGGCAATGTTGGACTTGATGCAAATGACCTAGTCTTGCTTTCTGGTGCACACACAATTGGTGTTTCCCATTGCTCATCAATTTCAACTAGGCTATATAATTTTACTGGCAAGGGTGATCAAGACCCAGATCTAGACAGTGAATATGCTAAGAATTTGAAAACATTTAAGTGTAAGAATATCAATGATCAAACCACACTTATTGAAATGGACCCTGGAAGTCGTAATACATTTGATCTTGGCTATTACAAGCAAGTAGTTAAGAGAAGAGGTTTGTTCCAATCAGATGCTGCATTGCTTAAAAGCTCTACAACAAGATCTATTCTTGCACAACATCTTCAATCAAATGAAAAATTCTTTATTGAATTTGGAAGGTCCATGGAAAAAATGGGGCGAATTAATGTGAAGATTGGGACTGAAGGAGAGATCAGAAAGCATTGTGCATTTATAAATTAA

Protein sequence

>Msa0543740

MGSQSYFKVLIICLIAIIGSTHAQLQPGFYAKSCPKAEQIVLKYVHEHIPSVPSLAAALIRLHFHDCFVKGCDASVLLNSTQTNQAEKDAIPNLTLRGYEFIDTIKSLVEKECPGVVSCADILTLTARDSIHAIGGPYWKVPTGRRDGIISKSADTFTSLPAPFHNLTVLLTLFGNVGLDANDLVLLSGAHTIGVSHCSSISTRLYNFTGKGDQDPDLDSEYAKNLKTFKCKNINDQTTLIEMDPGSRNTFDLGYYKQVVKRRGLFQSDAALLKSSTTRSILAQHLQSNEKFFIEFGRSMEKMGRINVKIGTEGEIRKHCAFIN*