AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1413090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413090 MtrunA17_Chr2g0311721 96.923 325 10 0 1 325 1 325 0.0 652
Msa1413090 MtrunA17_Chr4g0061581 29.721 323 200 11 10 320 14 321 4.31e-28 114
Msa1413090 MtrunA17_Chr4g0061581 29.200 250 161 10 4 240 61 307 5.48e-18 84.7
Msa1413090 MtrunA17_Chr1g0192821 26.300 327 205 10 8 323 15 316 2.82e-21 94.7
Msa1413090 MtrunA17_Chr4g0074871 28.049 246 163 5 31 272 292 527 6.24e-19 87.8
Msa1413090 MtrunA17_Chr4g0074871 29.560 159 99 3 8 161 374 524 4.47e-11 63.9
Msa1413090 MtrunA17_Chr4g0066851 26.446 242 149 9 24 247 158 388 9.55e-17 81.3
Msa1413090 MtrunA17_Chr4g0066851 25.610 246 168 7 7 240 83 325 2.61e-16 79.7
Msa1413090 MtrunA17_Chr4g0066851 26.860 242 152 9 59 288 83 311 3.71e-15 76.3
Msa1413090 MtrunA17_Chr4g0066851 28.889 180 124 4 8 185 193 370 7.37e-15 75.5
Msa1413090 MtrunA17_Chr1g0207821 29.545 264 157 11 36 273 87 347 3.76e-16 79.3
Msa1413090 MtrunA17_Chr7g0272641 30.994 171 111 5 24 191 245 411 1.59e-15 77.4
Msa1413090 MtrunA17_Chr7g0272641 24.727 275 188 6 4 270 170 433 2.96e-14 73.6
Msa1413090 MtrunA17_Chr7g0272641 23.358 274 169 13 52 310 170 417 1.17e-11 65.5
Msa1413090 MtrunA17_Chr1g0197401 29.143 175 117 5 20 191 88 258 1.64e-15 77.0
Msa1413090 MtrunA17_Chr2g0286241 26.423 246 166 7 7 240 75 317 2.17e-15 77.0
Msa1413090 MtrunA17_Chr2g0286241 27.136 199 124 6 24 211 150 338 5.63e-15 75.9
Msa1413090 MtrunA17_Chr1g0198221 27.481 262 159 10 61 307 8 253 2.37e-15 76.6
Msa1413090 MtrunA17_Chr2g0297971 24.623 199 140 6 51 240 274 471 1.62e-11 65.1
Msa1413090 MtrunA17_Chr2g0297971 28.125 352 199 19 6 325 281 610 4.97e-11 63.5
Msa1413090 MtrunA17_Chr4g0002171 26.877 253 148 12 20 241 120 366 7.05e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413090 AT3G07720.1 69.716 317 96 0 4 320 6 322 5.81e-171 478
Msa1413090 AT5G48180.1 53.395 324 149 2 1 324 1 322 2.82e-124 359
Msa1413090 AT3G16400.2 50.313 320 157 2 4 322 149 467 3.70e-113 336
Msa1413090 AT3G16400.1 50.313 320 157 2 4 322 149 467 3.70e-113 336
Msa1413090 AT3G16410.1 49.688 320 159 2 4 322 298 616 1.26e-111 337
Msa1413090 AT2G33070.1 50.313 320 157 2 4 322 150 468 1.07e-110 330
Msa1413090 AT2G33070.2 50.313 320 157 2 4 322 150 468 1.07e-110 330
Msa1413090 AT2G33070.3 50.000 322 157 3 4 322 150 470 1.35e-108 325
Msa1413090 AT3G16390.2 49.688 320 156 4 4 322 149 464 5.03e-107 320
Msa1413090 AT3G16390.1 49.688 320 156 4 4 322 149 464 5.03e-107 320
Msa1413090 AT1G54040.2 45.858 338 160 7 4 322 5 338 5.67e-99 295
Msa1413090 AT1G54040.3 46.012 326 154 6 15 322 11 332 2.69e-95 286
Msa1413090 AT1G54040.1 45.802 262 121 5 78 322 1 258 2.38e-75 232
Msa1413090 AT1G18610.1 28.846 312 199 7 19 320 23 321 8.16e-31 122
Msa1413090 AT1G18610.1 28.302 265 164 7 66 320 18 266 2.02e-17 83.2
Msa1413090 AT1G18610.2 28.846 312 199 7 19 320 23 321 8.16e-31 122
Msa1413090 AT1G18610.2 28.302 265 164 7 66 320 18 266 2.02e-17 83.2
Msa1413090 AT1G74150.2 27.564 312 203 7 19 320 20 318 8.02e-26 108
Msa1413090 AT1G74150.2 26.996 263 166 7 70 322 19 265 1.11e-15 78.2
Msa1413090 AT1G74150.2 31.677 161 103 4 7 161 111 270 2.07e-13 71.2
Msa1413090 AT1G74150.3 27.564 312 203 7 19 320 20 318 8.07e-26 108
Msa1413090 AT1G74150.3 26.996 263 166 7 70 322 19 265 1.08e-15 78.2
Msa1413090 AT1G74150.3 31.677 161 103 4 7 161 111 270 2.21e-13 71.2
Msa1413090 AT1G74150.1 27.564 312 203 7 19 320 20 318 8.72e-26 108
Msa1413090 AT1G74150.1 26.996 263 166 7 70 322 19 265 1.07e-15 78.2
Msa1413090 AT1G74150.1 31.677 161 103 4 7 161 111 270 2.14e-13 71.2
Msa1413090 AT1G74150.4 26.740 273 180 5 56 320 42 302 7.03e-21 93.6
Msa1413090 AT1G74150.4 25.000 232 163 6 8 230 46 275 3.65e-15 76.6
Msa1413090 AT1G74150.4 31.677 161 103 4 7 161 95 254 1.86e-13 71.2
Msa1413090 AT5G18590.2 27.542 236 154 7 24 247 140 370 9.08e-18 84.7
Msa1413090 AT5G18590.2 25.306 245 170 4 7 240 65 307 1.86e-16 80.5
Msa1413090 AT5G18590.2 25.087 287 177 10 16 288 32 294 1.16e-14 75.1
Msa1413090 AT5G18590.1 27.542 236 154 7 24 247 140 370 9.08e-18 84.7
Msa1413090 AT5G18590.1 25.306 245 170 4 7 240 65 307 1.86e-16 80.5
Msa1413090 AT5G18590.1 25.087 287 177 10 16 288 32 294 1.16e-14 75.1
Msa1413090 AT3G05420.2 26.786 280 181 7 4 270 168 436 3.67e-17 82.8
Msa1413090 AT3G05420.1 26.786 280 181 7 4 270 167 435 3.94e-17 82.8
Msa1413090 AT4G04670.1 33.333 141 91 2 21 161 376 513 1.07e-15 78.6
Msa1413090 AT4G04670.1 26.222 225 159 4 19 240 323 543 2.11e-15 77.8
Msa1413090 AT5G50310.1 25.735 272 167 8 30 279 94 352 2.24e-15 77.4
Msa1413090 AT5G04420.2 28.139 231 152 8 20 240 101 327 2.30e-14 73.9
Msa1413090 AT5G04420.1 28.139 231 152 8 20 240 101 327 2.30e-14 73.9
Msa1413090 AT5G04420.3 28.139 231 152 8 20 240 101 327 2.30e-14 73.9
Msa1413090 AT2G36360.2 26.820 261 162 8 61 307 8 253 2.43e-14 73.9
Msa1413090 AT2G36360.1 26.820 261 162 8 61 307 8 253 2.43e-14 73.9
Msa1413090 AT2G36360.3 26.820 261 162 8 61 307 8 253 2.55e-14 73.9
Msa1413090 AT2G36360.4 26.820 261 162 8 61 307 8 253 2.73e-14 73.9
Msa1413090 AT5G27630.4 31.690 142 93 3 52 191 275 414 3.64e-14 73.6
Msa1413090 AT5G27630.4 25.000 280 186 7 4 270 168 436 2.04e-13 71.2
Msa1413090 AT5G27630.2 31.690 142 93 3 52 191 275 414 3.82e-14 73.6
Msa1413090 AT5G27630.2 25.000 280 186 7 4 270 168 436 9.62e-14 72.4
Msa1413090 AT5G27630.1 31.690 142 93 3 52 191 275 414 3.83e-14 73.6
Msa1413090 AT5G27630.1 25.000 280 186 7 4 270 168 436 2.05e-13 71.2
Msa1413090 AT5G27630.3 31.690 142 93 3 52 191 275 414 4.29e-14 73.6
Msa1413090 AT5G27630.3 25.000 280 186 7 4 270 168 436 2.55e-13 71.2
Msa1413090 AT1G51550.1 28.287 251 145 12 21 241 123 368 9.61e-13 68.9
Msa1413090 AT5G57360.1 29.930 284 159 15 7 263 279 549 2.48e-12 68.2
Msa1413090 AT5G57360.2 29.930 284 159 15 7 263 279 549 2.75e-12 67.8
Msa1413090 AT1G68050.1 28.378 222 140 11 55 265 287 500 4.05e-12 67.4
Msa1413090 AT2G36360.5 25.926 270 162 9 61 307 8 262 5.97e-12 66.6
Msa1413090 AT2G18915.2 28.488 344 204 19 7 325 280 606 1.07e-11 66.2
Msa1413090 AT2G18915.1 28.488 344 204 19 7 325 270 596 1.19e-11 65.9

Find 120 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGAAGGCTCAATGATTTA+TGG 0.247369 tig0024002:-55646 Msa1413090:CDS
TTGATTTCAAGTGGAGATAT+TGG 0.273286 tig0024002:-55743 Msa1413090:CDS
GGAGAAACCATCTATGTATT+TGG 0.275442 tig0024002:-55836 Msa1413090:CDS
GATGAATACTGAACCGAAAT+TGG 0.280667 tig0024002:+57070 None:intergenic
GGTTCAGTATTCATCTTCTT+TGG 0.286267 tig0024002:-57062 Msa1413090:five_prime_UTR
ATTGGCCTCGCTATCGTTTA+CGG 0.295111 tig0024002:+57088 None:intergenic
TTGACACTAAAACCAACAAT+TGG 0.307459 tig0024002:-55769 Msa1413090:CDS
AACGATAGCGAGGCCAATTT+CGG 0.308515 tig0024002:-57083 Msa1413090:five_prime_UTR
CGTGGGTGGTGCGCATTTGC+CGG 0.322365 tig0024002:-55227 Msa1413090:CDS
ATCAATGACGATTATATATT+AGG 0.329170 tig0024002:-57122 Msa1413090:five_prime_UTR
CCATGAAGTATCGCCATTGC+TGG 0.348078 tig0024002:+57021 None:intergenic
GCGTGGTGGTGGGGTGTTGC+CGG 0.348601 tig0024002:+55883 None:intergenic
TGATTTCAAGTGGAGATATT+GGG 0.367335 tig0024002:-55742 Msa1413090:CDS
GGGAAACACATAATTGTATA+TGG 0.375479 tig0024002:-55386 Msa1413090:CDS
GCGCACCACCCACGTGGCCC+TGG 0.395028 tig0024002:+55236 None:intergenic
TCTTCCACCAAATACATAGA+TGG 0.400451 tig0024002:+55829 None:intergenic
CCAGCAATGGCGATACTTCA+TGG 0.407514 tig0024002:-57021 Msa1413090:exon
TGAAATCAATGCCCAATTGT+TGG 0.413835 tig0024002:+55757 None:intergenic
GAGATATTGGGCCTCCTAAC+CGG 0.415028 tig0024002:-55730 Msa1413090:CDS
TGGGCCTTTGATGTTGTAGA+TGG 0.416755 tig0024002:-55626 Msa1413090:CDS
AGGAAGGCTCAATGATTTAT+GGG 0.428980 tig0024002:-55645 Msa1413090:CDS
TTCGGCGGCTGTGGAGTGGC+AGG 0.443832 tig0024002:-55665 Msa1413090:CDS
GTGACACCGACGCGTGGTGG+TGG 0.445088 tig0024002:+55872 None:intergenic
CTGACCATGTCAATGTATCT+AGG 0.447488 tig0024002:+55918 None:intergenic
CCCATGTGACCTTGGTCACT+AGG 0.452252 tig0024002:+55350 None:intergenic
TTGCAAGGGAAGAGGTGGGC+CGG 0.453359 tig0024002:-55570 Msa1413090:CDS
TGACACTAAAACCAACAATT+GGG 0.453671 tig0024002:-55768 Msa1413090:CDS
TAAGCCCGCTTGTTTCCACT+TGG 0.463090 tig0024002:+55447 None:intergenic
CCTTGGGCAACTGTTAGGCC+CGG 0.464927 tig0024002:+55551 None:intergenic
TTGGACGATAAGGTGGAATC+AGG 0.467150 tig0024002:-55266 Msa1413090:CDS
TGCAAGGGAAGAGGTGGGCC+GGG 0.474673 tig0024002:-55569 Msa1413090:CDS
ATGGACGAGGTTGGACGATA+AGG 0.477851 tig0024002:-55276 Msa1413090:CDS
CAAGAGGGATTATTAGTGTA+TGG 0.478956 tig0024002:-55188 Msa1413090:CDS
CTTCCCTTGCAACTTTCACC+AGG 0.479391 tig0024002:+55581 None:intergenic
GGCGATACTTCATGGCAGTT+GGG 0.480675 tig0024002:-57013 Msa1413090:CDS
GTGGAATCAGGTGACCATCC+AGG 0.484389 tig0024002:-55254 Msa1413090:CDS
TGGCGATACTTCATGGCAGT+TGG 0.484948 tig0024002:-57014 Msa1413090:CDS
ACCACCCACGTGGCCCTGGA+TGG 0.485325 tig0024002:+55240 None:intergenic
AACACATAATTGTATATGGT+GGG 0.491224 tig0024002:-55382 Msa1413090:CDS
TGGTCAGTAGCCAATGTATC+CGG 0.491412 tig0024002:-55902 Msa1413090:CDS
CCCTAGTGACCAAGGTCACA+TGG 0.498673 tig0024002:-55351 Msa1413090:CDS
TGGGTGGAATTTCCATCTCC+TGG 0.503407 tig0024002:-55599 Msa1413090:CDS
GGACAGAAGGTCTATGCATT+CGG 0.507522 tig0024002:-55992 Msa1413090:CDS
ATGGAGTGGTAGCTCCGGTT+AGG 0.508095 tig0024002:+55716 None:intergenic
TTGCAACTTTCACCAGGAGA+TGG 0.508173 tig0024002:+55587 None:intergenic
TGACACCGACGCGTGGTGGT+GGG 0.508375 tig0024002:+55873 None:intergenic
GTGTCGCTCATCGGCAGTCA+TGG 0.509728 tig0024002:+55697 None:intergenic
GACCAAGGTCACATGGGTGC+TGG 0.513231 tig0024002:-55344 Msa1413090:CDS
AACATACACGTGTCGCTCAT+CGG 0.521986 tig0024002:+55688 None:intergenic
ACCATCCAGGGCCACGTGGG+TGG 0.523986 tig0024002:-55241 Msa1413090:CDS
CCATGTGACCTTGGTCACTA+GGG 0.525844 tig0024002:+55351 None:intergenic
TTCTTTGGTACGTCAGAGTG+TGG 0.526630 tig0024002:-57047 Msa1413090:five_prime_UTR
ACATGTAACTTGTTGTCGAC+AGG 0.531894 tig0024002:+55947 None:intergenic
TGGGGTGTTGCCGGATACAT+TGG 0.535359 tig0024002:+55892 None:intergenic
GACACTATCATGGACGAGGT+TGG 0.537344 tig0024002:-55285 Msa1413090:CDS
TTGGCTGCCTCGGCTAGCAC+CGG 0.541808 tig0024002:+55208 None:intergenic
ATAATCCCTCTTGGCTGCCT+CGG 0.546368 tig0024002:+55198 None:intergenic
TGACGTGCATTTCTTCGACC+TGG 0.546867 tig0024002:-55486 Msa1413090:CDS
GACCAGCACCCATGTGACCT+TGG 0.549010 tig0024002:+55342 None:intergenic
GGTGAAAGTTGCAAGGGAAG+AGG 0.549168 tig0024002:-55578 Msa1413090:CDS
GACACCGACGCGTGGTGGTG+GGG 0.549336 tig0024002:+55874 None:intergenic
TCATCAAGCCTGTCGTTGCT+AGG 0.553094 tig0024002:+55155 None:intergenic
GAAAGTTGCAAGGGAAGAGG+TGG 0.555227 tig0024002:-55575 Msa1413090:CDS
TTGTTTCAGCTTGATCAAAG+AGG 0.556708 tig0024002:-56058 Msa1413090:intron
GAAACCATCTATGTATTTGG+TGG 0.556915 tig0024002:-55833 Msa1413090:CDS
GGGCCCAAGTGGAAACAAGC+GGG 0.558194 tig0024002:-55451 Msa1413090:CDS
AACAAGTTGAAAACACACTA+CGG 0.558479 tig0024002:+55414 None:intergenic
AATTGGGCATTGATTTCAAG+TGG 0.559126 tig0024002:-55752 Msa1413090:CDS
GCTAGCCGAGGCAGCCAAGA+GGG 0.561545 tig0024002:-55203 Msa1413090:CDS
TGGAATCAGGTGACCATCCA+GGG 0.565322 tig0024002:-55253 Msa1413090:CDS
AAGCCCGCTTGTTTCCACTT+GGG 0.567060 tig0024002:+55448 None:intergenic
ATCTCCTGGTGAAAGTTGCA+AGG 0.567843 tig0024002:-55585 Msa1413090:CDS
CAGAGTGTGGATTCCAGCAA+TGG 0.569863 tig0024002:-57034 Msa1413090:exon
GAGTGGTAGCTCCGGTTAGG+AGG 0.569929 tig0024002:+55719 None:intergenic
CAGTCATGGAGTGGTAGCTC+CGG 0.571117 tig0024002:+55711 None:intergenic
CATACACTAATAATCCCTCT+TGG 0.571128 tig0024002:+55189 None:intergenic
GGTGTCACAATGGCTGCAGT+TGG 0.571354 tig0024002:-55857 Msa1413090:CDS
TATCGTTTACGGTAATGCGT+TGG 0.576409 tig0024002:+57099 None:intergenic
TTGATGTTGTAGATGGCAAG+TGG 0.580423 tig0024002:-55619 Msa1413090:CDS
ACTTCATGGCAGTTGGGTCA+AGG 0.582658 tig0024002:-57007 Msa1413090:intron
ACAAGTTGAAAACACACTAC+GGG 0.586581 tig0024002:+55415 None:intergenic
GCGGCTGTGGAGTGGCAGGA+AGG 0.587976 tig0024002:-55661 Msa1413090:CDS
GCAACTCACCTAGCAACGAC+AGG 0.588373 tig0024002:-55163 Msa1413090:CDS
GAAAACACACTACGGGCCGT+TGG 0.595615 tig0024002:+55422 None:intergenic
TATTGCCGTCGTAGGACAGA+AGG 0.597497 tig0024002:-56005 Msa1413090:CDS
AAACACATAATTGTATATGG+TGG 0.598952 tig0024002:-55383 Msa1413090:CDS
GACGAGGTTGGACGATAAGG+TGG 0.598960 tig0024002:-55273 Msa1413090:CDS
ACACATAATTGTATATGGTG+GGG 0.601078 tig0024002:-55381 Msa1413090:CDS
GATCAAAGAGGAATCTTGCA+AGG 0.605041 tig0024002:-56046 Msa1413090:CDS
ACTAACTTTGAGCAAGAGCA+AGG 0.608068 tig0024002:+55123 None:intergenic
AACAAGCGGGCTTAAACCAA+CGG 0.609017 tig0024002:-55438 Msa1413090:CDS
TAGACACGGAGACACTATCA+TGG 0.609879 tig0024002:-55295 Msa1413090:CDS
GCATTTGCCGGTGCTAGCCG+AGG 0.611791 tig0024002:-55215 Msa1413090:CDS
GAAATAGACCCTAGTGACCA+AGG 0.612642 tig0024002:-55359 Msa1413090:CDS
CGGAGACACTATCATGGACG+AGG 0.615534 tig0024002:-55289 Msa1413090:CDS
ACCACGCGTCGGTGTCACAA+TGG 0.617054 tig0024002:-55867 Msa1413090:CDS
TGGGCCCAAGTGGAAACAAG+CGG 0.619935 tig0024002:-55452 Msa1413090:CDS
TCTCCTGGTGAAAGTTGCAA+GGG 0.623404 tig0024002:-55584 Msa1413090:CDS
CTTGCCATCTACAACATCAA+AGG 0.626528 tig0024002:+55622 None:intergenic
TCACATGCTATTGCCGTCGT+AGG 0.631927 tig0024002:-56013 Msa1413090:CDS
GCTCATCGGCAGTCATGGAG+TGG 0.634077 tig0024002:+55702 None:intergenic
GGTGACCATCCAGGGCCACG+TGG 0.637621 tig0024002:-55245 Msa1413090:CDS
CCGGGCCTAACAGTTGCCCA+AGG 0.640109 tig0024002:-55551 Msa1413090:CDS
TGTTGTAGATGGCAAGTGGG+TGG 0.641254 tig0024002:-55615 Msa1413090:CDS
GTGACCATCCAGGGCCACGT+GGG 0.647327 tig0024002:-55244 Msa1413090:CDS
CCTAGTGACCAAGGTCACAT+GGG 0.649054 tig0024002:-55350 Msa1413090:CDS
ATTGTGACACCGACGCGTGG+TGG 0.649495 tig0024002:+55869 None:intergenic
AACACCCCACCACCACGCGT+CGG 0.652182 tig0024002:-55878 Msa1413090:CDS
TGATGTTGTAGATGGCAAGT+GGG 0.652890 tig0024002:-55618 Msa1413090:CDS
GAGGGATTATTAGTGTATGG+TGG 0.654652 tig0024002:-55185 Msa1413090:CDS
CAGAAGGTCTATGCATTCGG+TGG 0.655189 tig0024002:-55989 Msa1413090:CDS
TGCTAGCCGAGGCAGCCAAG+AGG 0.662151 tig0024002:-55204 Msa1413090:CDS
GCCATTGTGACACCGACGCG+TGG 0.669366 tig0024002:+55866 None:intergenic
AAAGTTGCAAGGGAAGAGGT+GGG 0.669531 tig0024002:-55574 Msa1413090:CDS
GCAAATGCGCACCACCCACG+TGG 0.684596 tig0024002:+55230 None:intergenic
GGAGCTTTATGCATTAGACA+CGG 0.692770 tig0024002:-55309 Msa1413090:CDS
CATTACCGTAAACGATAGCG+AGG 0.693565 tig0024002:-57093 Msa1413090:five_prime_UTR
ATAGACCTTCTGTCCTACGA+CGG 0.710613 tig0024002:+56000 None:intergenic
TTGTTGTCGACAGGAACACG+AGG 0.713518 tig0024002:+55956 None:intergenic
ATGACCTAGATACATTGACA+TGG 0.724446 tig0024002:-55922 Msa1413090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGGATTAACAATATATTT+TGG - tig0024002:55466-55485 Msa1413090:CDS 15.0%
!! TTAATTTACCTAAATATCTA+AGG + tig0024002:55901-55920 None:intergenic 15.0%
!!! TAAGATTTTTTGAAGTAATT+AGG - tig0024002:55924-55943 Msa1413090:CDS 15.0%
!!! TTTCATTTTAAGAACAATAT+GGG + tig0024002:56158-56177 None:intergenic 15.0%
!!! ATTTCATTTTAAGAACAATA+TGG + tig0024002:56159-56178 None:intergenic 15.0%
!!! TTTGGATTAACAATATATTT+TGG - tig0024002:55466-55485 Msa1413090:CDS 15.0%
!! TTAATTTACCTAAATATCTA+AGG + tig0024002:55901-55920 None:intergenic 15.0%
!!! TAAGATTTTTTGAAGTAATT+AGG - tig0024002:55924-55943 Msa1413090:CDS 15.0%
!!! TTTCATTTTAAGAACAATAT+GGG + tig0024002:56158-56177 None:intergenic 15.0%
!!! ATTTCATTTTAAGAACAATA+TGG + tig0024002:56159-56178 None:intergenic 15.0%
!! ATCAATGACGATTATATATT+AGG - tig0024002:55135-55154 Msa1413090:CDS 20.0%
!! TGTTTGTGAAATGAAAAATT+AGG - tig0024002:55405-55424 Msa1413090:CDS 20.0%
!! GTTTGTGAAATGAAAAATTA+GGG - tig0024002:55406-55425 Msa1413090:CDS 20.0%
!! TTTGTGAAATGAAAAATTAG+GGG - tig0024002:55407-55426 Msa1413090:CDS 20.0%
!! ATATATTGTTAATCCAAACA+TGG + tig0024002:55464-55483 None:intergenic 20.0%
!! AAAAATAGCTTATACATAAG+CGG + tig0024002:55506-55525 None:intergenic 20.0%
!!! ATTTTTTGAAGTAATTAGGT+TGG - tig0024002:55928-55947 Msa1413090:CDS 20.0%
!! ATCAATGACGATTATATATT+AGG - tig0024002:55135-55154 Msa1413090:CDS 20.0%
!! TGTTTGTGAAATGAAAAATT+AGG - tig0024002:55405-55424 Msa1413090:CDS 20.0%
!! GTTTGTGAAATGAAAAATTA+GGG - tig0024002:55406-55425 Msa1413090:CDS 20.0%
!! TTTGTGAAATGAAAAATTAG+GGG - tig0024002:55407-55426 Msa1413090:CDS 20.0%
!! ATATATTGTTAATCCAAACA+TGG + tig0024002:55464-55483 None:intergenic 20.0%
!! AAAAATAGCTTATACATAAG+CGG + tig0024002:55506-55525 None:intergenic 20.0%
!!! ATTTTTTGAAGTAATTAGGT+TGG - tig0024002:55928-55947 Msa1413090:CDS 20.0%
!!! AAATTAGGGGTTTTAGTTTA+TGG - tig0024002:55420-55439 Msa1413090:CDS 25.0%
! TATGGATTCTTTCTAGATTT+AGG - tig0024002:55438-55457 Msa1413090:CDS 25.0%
!!! GTTGTTTTCATACGTTATTT+TGG - tig0024002:55574-55593 Msa1413090:CDS 25.0%
!! GTTTATGACATTTTCATAAG+TGG + tig0024002:55626-55645 None:intergenic 25.0%
! AAGAACTAGTAATACTGTTT+AGG + tig0024002:55665-55684 None:intergenic 25.0%
!!! GTTTGAACAATTTTTAAGCA+CGG - tig0024002:55808-55827 Msa1413090:CDS 25.0%
! GTATTTCTCCTTAGATATTT+AGG - tig0024002:55890-55909 Msa1413090:CDS 25.0%
! AATTGTTATAGTTCATGTAC+AGG - tig0024002:55959-55978 Msa1413090:CDS 25.0%
!!! TGTTTTCAACTTGTTTGATT+GGG - tig0024002:56851-56870 Msa1413090:intron 25.0%
! AAACACATAATTGTATATGG+TGG - tig0024002:56874-56893 Msa1413090:intron 25.0%
! AACACATAATTGTATATGGT+GGG - tig0024002:56875-56894 Msa1413090:intron 25.0%
!!! AAATTAGGGGTTTTAGTTTA+TGG - tig0024002:55420-55439 Msa1413090:CDS 25.0%
! TATGGATTCTTTCTAGATTT+AGG - tig0024002:55438-55457 Msa1413090:CDS 25.0%
!!! GTTGTTTTCATACGTTATTT+TGG - tig0024002:55574-55593 Msa1413090:CDS 25.0%
!! GTTTATGACATTTTCATAAG+TGG + tig0024002:55626-55645 None:intergenic 25.0%
! AAGAACTAGTAATACTGTTT+AGG + tig0024002:55665-55684 None:intergenic 25.0%
!!! GTTTGAACAATTTTTAAGCA+CGG - tig0024002:55808-55827 Msa1413090:CDS 25.0%
! GTATTTCTCCTTAGATATTT+AGG - tig0024002:55890-55909 Msa1413090:CDS 25.0%
! AATTGTTATAGTTCATGTAC+AGG - tig0024002:55959-55978 Msa1413090:CDS 25.0%
!!! TGTTTTCAACTTGTTTGATT+GGG - tig0024002:56851-56870 Msa1413090:intron 25.0%
! AAACACATAATTGTATATGG+TGG - tig0024002:56874-56893 Msa1413090:intron 25.0%
! AACACATAATTGTATATGGT+GGG - tig0024002:56875-56894 Msa1413090:intron 25.0%
!! TTTTGCTCTGTTTAGCTTAT+TGG - tig0024002:55346-55365 Msa1413090:CDS 30.0%
ACATCTACAGGAACAATTAA+CGG + tig0024002:55727-55746 None:intergenic 30.0%
TAATTGTTCCTGTAGATGTA+AGG - tig0024002:55728-55747 Msa1413090:CDS 30.0%
CAAAAGCTATTCAAGAATAC+TGG + tig0024002:56054-56073 None:intergenic 30.0%
TTGACACTAAAACCAACAAT+TGG - tig0024002:56488-56507 Msa1413090:intron 30.0%
TGACACTAAAACCAACAATT+GGG - tig0024002:56489-56508 Msa1413090:intron 30.0%
! TTGATTTCAAGTGGAGATAT+TGG - tig0024002:56514-56533 Msa1413090:intron 30.0%
! TGATTTCAAGTGGAGATATT+GGG - tig0024002:56515-56534 Msa1413090:intron 30.0%
! AACAAGTTGAAAACACACTA+CGG + tig0024002:56846-56865 None:intergenic 30.0%
!! GTGTTTTCAACTTGTTTGAT+TGG - tig0024002:56850-56869 Msa1413090:intron 30.0%
GGGAAACACATAATTGTATA+TGG - tig0024002:56871-56890 Msa1413090:intron 30.0%
ACACATAATTGTATATGGTG+GGG - tig0024002:56876-56895 Msa1413090:intron 30.0%
!! TTTTGCTCTGTTTAGCTTAT+TGG - tig0024002:55346-55365 Msa1413090:CDS 30.0%
ACATCTACAGGAACAATTAA+CGG + tig0024002:55727-55746 None:intergenic 30.0%
TAATTGTTCCTGTAGATGTA+AGG - tig0024002:55728-55747 Msa1413090:CDS 30.0%
CAAAAGCTATTCAAGAATAC+TGG + tig0024002:56054-56073 None:intergenic 30.0%
TTGACACTAAAACCAACAAT+TGG - tig0024002:56488-56507 Msa1413090:intron 30.0%
TGACACTAAAACCAACAATT+GGG - tig0024002:56489-56508 Msa1413090:intron 30.0%
! TTGATTTCAAGTGGAGATAT+TGG - tig0024002:56514-56533 Msa1413090:intron 30.0%
! TGATTTCAAGTGGAGATATT+GGG - tig0024002:56515-56534 Msa1413090:intron 30.0%
! AACAAGTTGAAAACACACTA+CGG + tig0024002:56846-56865 None:intergenic 30.0%
!! GTGTTTTCAACTTGTTTGAT+TGG - tig0024002:56850-56869 Msa1413090:intron 30.0%
GGGAAACACATAATTGTATA+TGG - tig0024002:56871-56890 Msa1413090:intron 30.0%
ACACATAATTGTATATGGTG+GGG - tig0024002:56876-56895 Msa1413090:intron 30.0%
GATGAATACTGAACCGAAAT+TGG + tig0024002:55190-55209 None:intergenic 35.0%
GGTTCAGTATTCATCTTCTT+TGG - tig0024002:55195-55214 Msa1413090:CDS 35.0%
TTCTAGATTTAGGCCATGTT+TGG - tig0024002:55448-55467 Msa1413090:CDS 35.0%
!!! ACGTTATTTTGGAGAGCTTA+TGG - tig0024002:55585-55604 Msa1413090:CDS 35.0%
AATTAACGGTCTGTTTGGAT+TGG + tig0024002:55713-55732 None:intergenic 35.0%
! GTGACCTTTTGCTTAAGTTT+AGG - tig0024002:55763-55782 Msa1413090:CDS 35.0%
CCAACCTAAACTTAAGCAAA+AGG + tig0024002:55770-55789 None:intergenic 35.0%
! CCTTTTGCTTAAGTTTAGGT+TGG - tig0024002:55767-55786 Msa1413090:CDS 35.0%
CATGTACAGGCTAATAGTTA+AGG - tig0024002:55972-55991 Msa1413090:CDS 35.0%
TCTACCAGTATTCTACTAGA+TGG - tig0024002:56107-56126 Msa1413090:intron 35.0%
AATGCCATCTAGTAGAATAC+TGG + tig0024002:56114-56133 None:intergenic 35.0%
TTGTTTCAGCTTGATCAAAG+AGG - tig0024002:56199-56218 Msa1413090:intron 35.0%
ATGACCTAGATACATTGACA+TGG - tig0024002:56335-56354 Msa1413090:intron 35.0%
GGAGAAACCATCTATGTATT+TGG - tig0024002:56421-56440 Msa1413090:intron 35.0%
GAAACCATCTATGTATTTGG+TGG - tig0024002:56424-56443 Msa1413090:intron 35.0%
TCTTCCACCAAATACATAGA+TGG + tig0024002:56431-56450 None:intergenic 35.0%
TGAAATCAATGCCCAATTGT+TGG + tig0024002:56503-56522 None:intergenic 35.0%
!! AATTGGGCATTGATTTCAAG+TGG - tig0024002:56505-56524 Msa1413090:intron 35.0%
AGGAAGGCTCAATGATTTAT+GGG - tig0024002:56612-56631 Msa1413090:intron 35.0%
AGTTGCCCAAGGAAAAATAT+GGG - tig0024002:56717-56736 Msa1413090:intron 35.0%
! CACAACCCATATTTTTCCTT+GGG + tig0024002:56725-56744 None:intergenic 35.0%
! ACACAACCCATATTTTTCCT+TGG + tig0024002:56726-56745 None:intergenic 35.0%
! GGAAAAATATGGGTTGTGTA+TGG - tig0024002:56727-56746 Msa1413090:intron 35.0%
! ACAAGTTGAAAACACACTAC+GGG + tig0024002:56845-56864 None:intergenic 35.0%
CATACACTAATAATCCCTCT+TGG + tig0024002:57071-57090 None:intergenic 35.0%
CAAGAGGGATTATTAGTGTA+TGG - tig0024002:57069-57088 Msa1413090:five_prime_UTR 35.0%
GATGAATACTGAACCGAAAT+TGG + tig0024002:55190-55209 None:intergenic 35.0%
GGTTCAGTATTCATCTTCTT+TGG - tig0024002:55195-55214 Msa1413090:CDS 35.0%
TTCTAGATTTAGGCCATGTT+TGG - tig0024002:55448-55467 Msa1413090:CDS 35.0%
!!! ACGTTATTTTGGAGAGCTTA+TGG - tig0024002:55585-55604 Msa1413090:CDS 35.0%
AATTAACGGTCTGTTTGGAT+TGG + tig0024002:55713-55732 None:intergenic 35.0%
! GTGACCTTTTGCTTAAGTTT+AGG - tig0024002:55763-55782 Msa1413090:CDS 35.0%
CCAACCTAAACTTAAGCAAA+AGG + tig0024002:55770-55789 None:intergenic 35.0%
! CCTTTTGCTTAAGTTTAGGT+TGG - tig0024002:55767-55786 Msa1413090:CDS 35.0%
CATGTACAGGCTAATAGTTA+AGG - tig0024002:55972-55991 Msa1413090:CDS 35.0%
TCTACCAGTATTCTACTAGA+TGG - tig0024002:56107-56126 Msa1413090:intron 35.0%
AATGCCATCTAGTAGAATAC+TGG + tig0024002:56114-56133 None:intergenic 35.0%
TTGTTTCAGCTTGATCAAAG+AGG - tig0024002:56199-56218 Msa1413090:intron 35.0%
ATGACCTAGATACATTGACA+TGG - tig0024002:56335-56354 Msa1413090:intron 35.0%
GGAGAAACCATCTATGTATT+TGG - tig0024002:56421-56440 Msa1413090:intron 35.0%
GAAACCATCTATGTATTTGG+TGG - tig0024002:56424-56443 Msa1413090:intron 35.0%
TCTTCCACCAAATACATAGA+TGG + tig0024002:56431-56450 None:intergenic 35.0%
TGAAATCAATGCCCAATTGT+TGG + tig0024002:56503-56522 None:intergenic 35.0%
!! AATTGGGCATTGATTTCAAG+TGG - tig0024002:56505-56524 Msa1413090:intron 35.0%
AGGAAGGCTCAATGATTTAT+GGG - tig0024002:56612-56631 Msa1413090:intron 35.0%
AGTTGCCCAAGGAAAAATAT+GGG - tig0024002:56717-56736 Msa1413090:intron 35.0%
! CACAACCCATATTTTTCCTT+GGG + tig0024002:56725-56744 None:intergenic 35.0%
! ACACAACCCATATTTTTCCT+TGG + tig0024002:56726-56745 None:intergenic 35.0%
! GGAAAAATATGGGTTGTGTA+TGG - tig0024002:56727-56746 Msa1413090:intron 35.0%
! ACAAGTTGAAAACACACTAC+GGG + tig0024002:56845-56864 None:intergenic 35.0%
CATACACTAATAATCCCTCT+TGG + tig0024002:57071-57090 None:intergenic 35.0%
CAAGAGGGATTATTAGTGTA+TGG - tig0024002:57069-57088 Msa1413090:five_prime_UTR 35.0%
TATCGTTTACGGTAATGCGT+TGG + tig0024002:55161-55180 None:intergenic 40.0%
GGAACAATTAACGGTCTGTT+TGG + tig0024002:55718-55737 None:intergenic 40.0%
TTCCTGTAGATGTAAGGATG+CGG - tig0024002:55734-55753 Msa1413090:CDS 40.0%
GATCAAAGAGGAATCTTGCA+AGG - tig0024002:56211-56230 Msa1413090:intron 40.0%
!! ACATGTAACTTGTTGTCGAC+AGG + tig0024002:56313-56332 None:intergenic 40.0%
CTGACCATGTCAATGTATCT+AGG + tig0024002:56342-56361 None:intergenic 40.0%
CAGGAAGGCTCAATGATTTA+TGG - tig0024002:56611-56630 Msa1413090:intron 40.0%
CTTGCCATCTACAACATCAA+AGG + tig0024002:56638-56657 None:intergenic 40.0%
TTGATGTTGTAGATGGCAAG+TGG - tig0024002:56638-56657 Msa1413090:intron 40.0%
TGATGTTGTAGATGGCAAGT+GGG - tig0024002:56639-56658 Msa1413090:intron 40.0%
! TTTTTCCTTGGGCAACTGTT+AGG + tig0024002:56714-56733 None:intergenic 40.0%
CAGTTGCCCAAGGAAAAATA+TGG - tig0024002:56716-56735 Msa1413090:intron 40.0%
!! TGTGTATGGTTTTGCTGGAA+TGG - tig0024002:56741-56760 Msa1413090:intron 40.0%
! GGAGCTTTATGCATTAGACA+CGG - tig0024002:56948-56967 Msa1413090:intron 40.0%
GAGGGATTATTAGTGTATGG+TGG - tig0024002:57072-57091 Msa1413090:five_prime_UTR 40.0%
TATCGTTTACGGTAATGCGT+TGG + tig0024002:55161-55180 None:intergenic 40.0%
GGAACAATTAACGGTCTGTT+TGG + tig0024002:55718-55737 None:intergenic 40.0%
TTCCTGTAGATGTAAGGATG+CGG - tig0024002:55734-55753 Msa1413090:CDS 40.0%
GATCAAAGAGGAATCTTGCA+AGG - tig0024002:56211-56230 Msa1413090:intron 40.0%
!! ACATGTAACTTGTTGTCGAC+AGG + tig0024002:56313-56332 None:intergenic 40.0%
CTGACCATGTCAATGTATCT+AGG + tig0024002:56342-56361 None:intergenic 40.0%
CAGGAAGGCTCAATGATTTA+TGG - tig0024002:56611-56630 Msa1413090:intron 40.0%
CTTGCCATCTACAACATCAA+AGG + tig0024002:56638-56657 None:intergenic 40.0%
TTGATGTTGTAGATGGCAAG+TGG - tig0024002:56638-56657 Msa1413090:intron 40.0%
TGATGTTGTAGATGGCAAGT+GGG - tig0024002:56639-56658 Msa1413090:intron 40.0%
! TTTTTCCTTGGGCAACTGTT+AGG + tig0024002:56714-56733 None:intergenic 40.0%
CAGTTGCCCAAGGAAAAATA+TGG - tig0024002:56716-56735 Msa1413090:intron 40.0%
!! TGTGTATGGTTTTGCTGGAA+TGG - tig0024002:56741-56760 Msa1413090:intron 40.0%
! GGAGCTTTATGCATTAGACA+CGG - tig0024002:56948-56967 Msa1413090:intron 40.0%
GAGGGATTATTAGTGTATGG+TGG - tig0024002:57072-57091 Msa1413090:five_prime_UTR 40.0%
CATTACCGTAAACGATAGCG+AGG - tig0024002:55164-55183 Msa1413090:CDS 45.0%
! ATTGGCCTCGCTATCGTTTA+CGG + tig0024002:55172-55191 None:intergenic 45.0%
AACGATAGCGAGGCCAATTT+CGG - tig0024002:55174-55193 Msa1413090:CDS 45.0%
TTCTTTGGTACGTCAGAGTG+TGG - tig0024002:55210-55229 Msa1413090:CDS 45.0%
ATAGACCTTCTGTCCTACGA+CGG + tig0024002:56260-56279 None:intergenic 45.0%
GGACAGAAGGTCTATGCATT+CGG - tig0024002:56265-56284 Msa1413090:intron 45.0%
TGGTCAGTAGCCAATGTATC+CGG - tig0024002:56355-56374 Msa1413090:intron 45.0%
! AACATACACGTGTCGCTCAT+CGG + tig0024002:56572-56591 None:intergenic 45.0%
! GAGCGACACGTGTATGTTTT+CGG - tig0024002:56574-56593 Msa1413090:intron 45.0%
TGGGCCTTTGATGTTGTAGA+TGG - tig0024002:56631-56650 Msa1413090:intron 45.0%
TTGCAACTTTCACCAGGAGA+TGG + tig0024002:56673-56692 None:intergenic 45.0%
ATCTCCTGGTGAAAGTTGCA+AGG - tig0024002:56672-56691 Msa1413090:intron 45.0%
TCTCCTGGTGAAAGTTGCAA+GGG - tig0024002:56673-56692 Msa1413090:intron 45.0%
AAAGTTGCAAGGGAAGAGGT+GGG - tig0024002:56683-56702 Msa1413090:intron 45.0%
!! TGGGTTGTGTATGGTTTTGC+TGG - tig0024002:56736-56755 Msa1413090:intron 45.0%
!! TGGTTTTGCTGGAATGGAAG+TGG - tig0024002:56747-56766 Msa1413090:intron 45.0%
!!! CACTTGGGCCCATGTTTTTT+GGG + tig0024002:56797-56816 None:intergenic 45.0%
! AACAAGCGGGCTTAAACCAA+CGG - tig0024002:56819-56838 Msa1413090:intron 45.0%
GAAATAGACCCTAGTGACCA+AGG - tig0024002:56898-56917 Msa1413090:intron 45.0%
!!! ATGGGTGCTGGTCAATTTTC+AGG - tig0024002:56925-56944 Msa1413090:intron 45.0%
!!! TGGGTGCTGGTCAATTTTCA+GGG - tig0024002:56926-56945 Msa1413090:intron 45.0%
TAGACACGGAGACACTATCA+TGG - tig0024002:56962-56981 Msa1413090:intron 45.0%
TTGGACGATAAGGTGGAATC+AGG - tig0024002:56991-57010 Msa1413090:intron 45.0%
CATTACCGTAAACGATAGCG+AGG - tig0024002:55164-55183 Msa1413090:CDS 45.0%
! ATTGGCCTCGCTATCGTTTA+CGG + tig0024002:55172-55191 None:intergenic 45.0%
AACGATAGCGAGGCCAATTT+CGG - tig0024002:55174-55193 Msa1413090:CDS 45.0%
TTCTTTGGTACGTCAGAGTG+TGG - tig0024002:55210-55229 Msa1413090:CDS 45.0%
ATAGACCTTCTGTCCTACGA+CGG + tig0024002:56260-56279 None:intergenic 45.0%
GGACAGAAGGTCTATGCATT+CGG - tig0024002:56265-56284 Msa1413090:intron 45.0%
TGGTCAGTAGCCAATGTATC+CGG - tig0024002:56355-56374 Msa1413090:intron 45.0%
! AACATACACGTGTCGCTCAT+CGG + tig0024002:56572-56591 None:intergenic 45.0%
! GAGCGACACGTGTATGTTTT+CGG - tig0024002:56574-56593 Msa1413090:intron 45.0%
TGGGCCTTTGATGTTGTAGA+TGG - tig0024002:56631-56650 Msa1413090:intron 45.0%
TTGCAACTTTCACCAGGAGA+TGG + tig0024002:56673-56692 None:intergenic 45.0%
ATCTCCTGGTGAAAGTTGCA+AGG - tig0024002:56672-56691 Msa1413090:intron 45.0%
TCTCCTGGTGAAAGTTGCAA+GGG - tig0024002:56673-56692 Msa1413090:intron 45.0%
AAAGTTGCAAGGGAAGAGGT+GGG - tig0024002:56683-56702 Msa1413090:intron 45.0%
!! TGGGTTGTGTATGGTTTTGC+TGG - tig0024002:56736-56755 Msa1413090:intron 45.0%
!! TGGTTTTGCTGGAATGGAAG+TGG - tig0024002:56747-56766 Msa1413090:intron 45.0%
!!! CACTTGGGCCCATGTTTTTT+GGG + tig0024002:56797-56816 None:intergenic 45.0%
! AACAAGCGGGCTTAAACCAA+CGG - tig0024002:56819-56838 Msa1413090:intron 45.0%
GAAATAGACCCTAGTGACCA+AGG - tig0024002:56898-56917 Msa1413090:intron 45.0%
!!! ATGGGTGCTGGTCAATTTTC+AGG - tig0024002:56925-56944 Msa1413090:intron 45.0%
!!! TGGGTGCTGGTCAATTTTCA+GGG - tig0024002:56926-56945 Msa1413090:intron 45.0%
TAGACACGGAGACACTATCA+TGG - tig0024002:56962-56981 Msa1413090:intron 45.0%
TTGGACGATAAGGTGGAATC+AGG - tig0024002:56991-57010 Msa1413090:intron 45.0%
CAGAGTGTGGATTCCAGCAA+TGG - tig0024002:55223-55242 Msa1413090:CDS 50.0%
!! CCATGAAGTATCGCCATTGC+TGG + tig0024002:55239-55258 None:intergenic 50.0%
CCAGCAATGGCGATACTTCA+TGG - tig0024002:55236-55255 Msa1413090:CDS 50.0%
TGGCGATACTTCATGGCAGT+TGG - tig0024002:55243-55262 Msa1413090:CDS 50.0%
GGCGATACTTCATGGCAGTT+GGG - tig0024002:55244-55263 Msa1413090:CDS 50.0%
ACTTCATGGCAGTTGGGTCA+AGG - tig0024002:55250-55269 Msa1413090:CDS 50.0%
CTCCGCATCCTTACATCTAC+AGG + tig0024002:55739-55758 None:intergenic 50.0%
CTGTAGATGTAAGGATGCGG+AGG - tig0024002:55737-55756 Msa1413090:CDS 50.0%
TATGCAAGCGATAGCGAGAG+TGG + tig0024002:55863-55882 None:intergenic 50.0%
TCACATGCTATTGCCGTCGT+AGG - tig0024002:56244-56263 Msa1413090:intron 50.0%
TATTGCCGTCGTAGGACAGA+AGG - tig0024002:56252-56271 Msa1413090:intron 50.0%
CAGAAGGTCTATGCATTCGG+TGG - tig0024002:56268-56287 Msa1413090:intron 50.0%
TTGTTGTCGACAGGAACACG+AGG + tig0024002:56304-56323 None:intergenic 50.0%
GAGATATTGGGCCTCCTAAC+CGG - tig0024002:56527-56546 Msa1413090:intron 50.0%
! CGACACGTGTATGTTTTCGG+CGG - tig0024002:56577-56596 Msa1413090:intron 50.0%
TGTTGTAGATGGCAAGTGGG+TGG - tig0024002:56642-56661 Msa1413090:intron 50.0%
TGGGTGGAATTTCCATCTCC+TGG - tig0024002:56658-56677 Msa1413090:intron 50.0%
CTTCCCTTGCAACTTTCACC+AGG + tig0024002:56679-56698 None:intergenic 50.0%
GGTGAAAGTTGCAAGGGAAG+AGG - tig0024002:56679-56698 Msa1413090:intron 50.0%
GAAAGTTGCAAGGGAAGAGG+TGG - tig0024002:56682-56701 Msa1413090:intron 50.0%
TGACGTGCATTTCTTCGACC+TGG - tig0024002:56771-56790 Msa1413090:intron 50.0%
TCGACCTGGCCCAAAAAACA+TGG - tig0024002:56785-56804 Msa1413090:intron 50.0%
CGACCTGGCCCAAAAAACAT+GGG - tig0024002:56786-56805 Msa1413090:intron 50.0%
!!! CCACTTGGGCCCATGTTTTT+TGG + tig0024002:56798-56817 None:intergenic 50.0%
CCAAAAAACATGGGCCCAAG+TGG - tig0024002:56795-56814 Msa1413090:intron 50.0%
AAGCCCGCTTGTTTCCACTT+GGG + tig0024002:56812-56831 None:intergenic 50.0%
TAAGCCCGCTTGTTTCCACT+TGG + tig0024002:56813-56832 None:intergenic 50.0%
CCATGTGACCTTGGTCACTA+GGG + tig0024002:56909-56928 None:intergenic 50.0%
CCTAGTGACCAAGGTCACAT+GGG - tig0024002:56907-56926 Msa1413090:intron 50.0%
!!! GGGTGCTGGTCAATTTTCAG+GGG - tig0024002:56927-56946 Msa1413090:intron 50.0%
GACACTATCATGGACGAGGT+TGG - tig0024002:56972-56991 Msa1413090:intron 50.0%
ATGGACGAGGTTGGACGATA+AGG - tig0024002:56981-57000 Msa1413090:intron 50.0%
TGGAATCAGGTGACCATCCA+GGG - tig0024002:57004-57023 Msa1413090:intron 50.0%
ATAATCCCTCTTGGCTGCCT+CGG + tig0024002:57062-57081 None:intergenic 50.0%
TCATCAAGCCTGTCGTTGCT+AGG + tig0024002:57105-57124 None:intergenic 50.0%
CAGAGTGTGGATTCCAGCAA+TGG - tig0024002:55223-55242 Msa1413090:CDS 50.0%
!! CCATGAAGTATCGCCATTGC+TGG + tig0024002:55239-55258 None:intergenic 50.0%
CCAGCAATGGCGATACTTCA+TGG - tig0024002:55236-55255 Msa1413090:CDS 50.0%
TGGCGATACTTCATGGCAGT+TGG - tig0024002:55243-55262 Msa1413090:CDS 50.0%
GGCGATACTTCATGGCAGTT+GGG - tig0024002:55244-55263 Msa1413090:CDS 50.0%
ACTTCATGGCAGTTGGGTCA+AGG - tig0024002:55250-55269 Msa1413090:CDS 50.0%
CTCCGCATCCTTACATCTAC+AGG + tig0024002:55739-55758 None:intergenic 50.0%
CTGTAGATGTAAGGATGCGG+AGG - tig0024002:55737-55756 Msa1413090:CDS 50.0%
TATGCAAGCGATAGCGAGAG+TGG + tig0024002:55863-55882 None:intergenic 50.0%
TCACATGCTATTGCCGTCGT+AGG - tig0024002:56244-56263 Msa1413090:intron 50.0%
TATTGCCGTCGTAGGACAGA+AGG - tig0024002:56252-56271 Msa1413090:intron 50.0%
CAGAAGGTCTATGCATTCGG+TGG - tig0024002:56268-56287 Msa1413090:intron 50.0%
TTGTTGTCGACAGGAACACG+AGG + tig0024002:56304-56323 None:intergenic 50.0%
GAGATATTGGGCCTCCTAAC+CGG - tig0024002:56527-56546 Msa1413090:intron 50.0%
! CGACACGTGTATGTTTTCGG+CGG - tig0024002:56577-56596 Msa1413090:intron 50.0%
TGTTGTAGATGGCAAGTGGG+TGG - tig0024002:56642-56661 Msa1413090:intron 50.0%
TGGGTGGAATTTCCATCTCC+TGG - tig0024002:56658-56677 Msa1413090:intron 50.0%
CTTCCCTTGCAACTTTCACC+AGG + tig0024002:56679-56698 None:intergenic 50.0%
GGTGAAAGTTGCAAGGGAAG+AGG - tig0024002:56679-56698 Msa1413090:intron 50.0%
GAAAGTTGCAAGGGAAGAGG+TGG - tig0024002:56682-56701 Msa1413090:intron 50.0%
TGACGTGCATTTCTTCGACC+TGG - tig0024002:56771-56790 Msa1413090:intron 50.0%
TCGACCTGGCCCAAAAAACA+TGG - tig0024002:56785-56804 Msa1413090:intron 50.0%
CGACCTGGCCCAAAAAACAT+GGG - tig0024002:56786-56805 Msa1413090:intron 50.0%
!!! CCACTTGGGCCCATGTTTTT+TGG + tig0024002:56798-56817 None:intergenic 50.0%
CCAAAAAACATGGGCCCAAG+TGG - tig0024002:56795-56814 Msa1413090:intron 50.0%
AAGCCCGCTTGTTTCCACTT+GGG + tig0024002:56812-56831 None:intergenic 50.0%
TAAGCCCGCTTGTTTCCACT+TGG + tig0024002:56813-56832 None:intergenic 50.0%
CCATGTGACCTTGGTCACTA+GGG + tig0024002:56909-56928 None:intergenic 50.0%
CCTAGTGACCAAGGTCACAT+GGG - tig0024002:56907-56926 Msa1413090:intron 50.0%
!!! GGGTGCTGGTCAATTTTCAG+GGG - tig0024002:56927-56946 Msa1413090:intron 50.0%
GACACTATCATGGACGAGGT+TGG - tig0024002:56972-56991 Msa1413090:intron 50.0%
ATGGACGAGGTTGGACGATA+AGG - tig0024002:56981-57000 Msa1413090:intron 50.0%
TGGAATCAGGTGACCATCCA+GGG - tig0024002:57004-57023 Msa1413090:intron 50.0%
ATAATCCCTCTTGGCTGCCT+CGG + tig0024002:57062-57081 None:intergenic 50.0%
TCATCAAGCCTGTCGTTGCT+AGG + tig0024002:57105-57124 None:intergenic 50.0%
!! TGGGGTGTTGCCGGATACAT+TGG + tig0024002:56368-56387 None:intergenic 55.0%
! GGTGTCACAATGGCTGCAGT+TGG - tig0024002:56400-56419 Msa1413090:intron 55.0%
ATGGAGTGGTAGCTCCGGTT+AGG + tig0024002:56544-56563 None:intergenic 55.0%
CAGTCATGGAGTGGTAGCTC+CGG + tig0024002:56549-56568 None:intergenic 55.0%
! GTGTATGTTTTCGGCGGCTG+TGG - tig0024002:56583-56602 Msa1413090:intron 55.0%
TGGGCCCAAGTGGAAACAAG+CGG - tig0024002:56805-56824 Msa1413090:intron 55.0%
GAAAACACACTACGGGCCGT+TGG + tig0024002:56838-56857 None:intergenic 55.0%
CCCTAGTGACCAAGGTCACA+TGG - tig0024002:56906-56925 Msa1413090:intron 55.0%
CCCATGTGACCTTGGTCACT+AGG + tig0024002:56910-56929 None:intergenic 55.0%
CGGAGACACTATCATGGACG+AGG - tig0024002:56968-56987 Msa1413090:intron 55.0%
GACGAGGTTGGACGATAAGG+TGG - tig0024002:56984-57003 Msa1413090:intron 55.0%
GTGGAATCAGGTGACCATCC+AGG - tig0024002:57003-57022 Msa1413090:intron 55.0%
GCAACTCACCTAGCAACGAC+AGG - tig0024002:57094-57113 Msa1413090:five_prime_UTR 55.0%
!! TGGGGTGTTGCCGGATACAT+TGG + tig0024002:56368-56387 None:intergenic 55.0%
! GGTGTCACAATGGCTGCAGT+TGG - tig0024002:56400-56419 Msa1413090:intron 55.0%
ATGGAGTGGTAGCTCCGGTT+AGG + tig0024002:56544-56563 None:intergenic 55.0%
CAGTCATGGAGTGGTAGCTC+CGG + tig0024002:56549-56568 None:intergenic 55.0%
! GTGTATGTTTTCGGCGGCTG+TGG - tig0024002:56583-56602 Msa1413090:intron 55.0%
TGGGCCCAAGTGGAAACAAG+CGG - tig0024002:56805-56824 Msa1413090:intron 55.0%
GAAAACACACTACGGGCCGT+TGG + tig0024002:56838-56857 None:intergenic 55.0%
CCCTAGTGACCAAGGTCACA+TGG - tig0024002:56906-56925 Msa1413090:intron 55.0%
CCCATGTGACCTTGGTCACT+AGG + tig0024002:56910-56929 None:intergenic 55.0%
CGGAGACACTATCATGGACG+AGG - tig0024002:56968-56987 Msa1413090:intron 55.0%
GACGAGGTTGGACGATAAGG+TGG - tig0024002:56984-57003 Msa1413090:intron 55.0%
GTGGAATCAGGTGACCATCC+AGG - tig0024002:57003-57022 Msa1413090:intron 55.0%
GCAACTCACCTAGCAACGAC+AGG - tig0024002:57094-57113 Msa1413090:five_prime_UTR 55.0%
ATTGTGACACCGACGCGTGG+TGG + tig0024002:56391-56410 None:intergenic 60.0%
!! ACCACGCGTCGGTGTCACAA+TGG - tig0024002:56390-56409 Msa1413090:intron 60.0%
GAGTGGTAGCTCCGGTTAGG+AGG + tig0024002:56541-56560 None:intergenic 60.0%
GCTCATCGGCAGTCATGGAG+TGG + tig0024002:56558-56577 None:intergenic 60.0%
! GTGTCGCTCATCGGCAGTCA+TGG + tig0024002:56563-56582 None:intergenic 60.0%
! TGTTTTCGGCGGCTGTGGAG+TGG - tig0024002:56588-56607 Msa1413090:intron 60.0%
TTGCAAGGGAAGAGGTGGGC+CGG - tig0024002:56687-56706 Msa1413090:intron 60.0%
CCTTGGGCAACTGTTAGGCC+CGG + tig0024002:56709-56728 None:intergenic 60.0%
!!! GGGCCCATGTTTTTTGGGCC+AGG + tig0024002:56792-56811 None:intergenic 60.0%
GGGCCCAAGTGGAAACAAGC+GGG - tig0024002:56806-56825 Msa1413090:intron 60.0%
GACCAAGGTCACATGGGTGC+TGG - tig0024002:56913-56932 Msa1413090:intron 60.0%
GACCAGCACCCATGTGACCT+TGG + tig0024002:56918-56937 None:intergenic 60.0%
ATTGTGACACCGACGCGTGG+TGG + tig0024002:56391-56410 None:intergenic 60.0%
!! ACCACGCGTCGGTGTCACAA+TGG - tig0024002:56390-56409 Msa1413090:intron 60.0%
GAGTGGTAGCTCCGGTTAGG+AGG + tig0024002:56541-56560 None:intergenic 60.0%
GCTCATCGGCAGTCATGGAG+TGG + tig0024002:56558-56577 None:intergenic 60.0%
! GTGTCGCTCATCGGCAGTCA+TGG + tig0024002:56563-56582 None:intergenic 60.0%
! TGTTTTCGGCGGCTGTGGAG+TGG - tig0024002:56588-56607 Msa1413090:intron 60.0%
TTGCAAGGGAAGAGGTGGGC+CGG - tig0024002:56687-56706 Msa1413090:intron 60.0%
CCTTGGGCAACTGTTAGGCC+CGG + tig0024002:56709-56728 None:intergenic 60.0%
!!! GGGCCCATGTTTTTTGGGCC+AGG + tig0024002:56792-56811 None:intergenic 60.0%
GGGCCCAAGTGGAAACAAGC+GGG - tig0024002:56806-56825 Msa1413090:intron 60.0%
GACCAAGGTCACATGGGTGC+TGG - tig0024002:56913-56932 Msa1413090:intron 60.0%
GACCAGCACCCATGTGACCT+TGG + tig0024002:56918-56937 None:intergenic 60.0%
AACACCCCACCACCACGCGT+CGG - tig0024002:56379-56398 Msa1413090:intron 65.0%
TGACACCGACGCGTGGTGGT+GGG + tig0024002:56387-56406 None:intergenic 65.0%
GCCATTGTGACACCGACGCG+TGG + tig0024002:56394-56413 None:intergenic 65.0%
TGCAAGGGAAGAGGTGGGCC+GGG - tig0024002:56688-56707 Msa1413090:intron 65.0%
CCGGGCCTAACAGTTGCCCA+AGG - tig0024002:56706-56725 Msa1413090:intron 65.0%
GTGACCATCCAGGGCCACGT+GGG - tig0024002:57013-57032 Msa1413090:CDS 65.0%
GCAAATGCGCACCACCCACG+TGG + tig0024002:57030-57049 None:intergenic 65.0%
CGTGGGTGGTGCGCATTTGC+CGG - tig0024002:57030-57049 Msa1413090:exon 65.0%
! GCATTTGCCGGTGCTAGCCG+AGG - tig0024002:57042-57061 Msa1413090:five_prime_UTR 65.0%
TTGGCTGCCTCGGCTAGCAC+CGG + tig0024002:57052-57071 None:intergenic 65.0%
TGCTAGCCGAGGCAGCCAAG+AGG - tig0024002:57053-57072 Msa1413090:five_prime_UTR 65.0%
GCTAGCCGAGGCAGCCAAGA+GGG - tig0024002:57054-57073 Msa1413090:five_prime_UTR 65.0%
AACACCCCACCACCACGCGT+CGG - tig0024002:56379-56398 Msa1413090:intron 65.0%
TGACACCGACGCGTGGTGGT+GGG + tig0024002:56387-56406 None:intergenic 65.0%
GCCATTGTGACACCGACGCG+TGG + tig0024002:56394-56413 None:intergenic 65.0%
TGCAAGGGAAGAGGTGGGCC+GGG - tig0024002:56688-56707 Msa1413090:intron 65.0%
CCGGGCCTAACAGTTGCCCA+AGG - tig0024002:56706-56725 Msa1413090:intron 65.0%
GTGACCATCCAGGGCCACGT+GGG - tig0024002:57013-57032 Msa1413090:CDS 65.0%
GCAAATGCGCACCACCCACG+TGG + tig0024002:57030-57049 None:intergenic 65.0%
CGTGGGTGGTGCGCATTTGC+CGG - tig0024002:57030-57049 Msa1413090:exon 65.0%
! GCATTTGCCGGTGCTAGCCG+AGG - tig0024002:57042-57061 Msa1413090:five_prime_UTR 65.0%
TTGGCTGCCTCGGCTAGCAC+CGG + tig0024002:57052-57071 None:intergenic 65.0%
TGCTAGCCGAGGCAGCCAAG+AGG - tig0024002:57053-57072 Msa1413090:five_prime_UTR 65.0%
GCTAGCCGAGGCAGCCAAGA+GGG - tig0024002:57054-57073 Msa1413090:five_prime_UTR 65.0%
!! GCGTGGTGGTGGGGTGTTGC+CGG + tig0024002:56377-56396 None:intergenic 70.0%
! GACACCGACGCGTGGTGGTG+GGG + tig0024002:56386-56405 None:intergenic 70.0%
GTGACACCGACGCGTGGTGG+TGG + tig0024002:56388-56407 None:intergenic 70.0%
TTCGGCGGCTGTGGAGTGGC+AGG - tig0024002:56592-56611 Msa1413090:intron 70.0%
GCGGCTGTGGAGTGGCAGGA+AGG - tig0024002:56596-56615 Msa1413090:intron 70.0%
GGTGACCATCCAGGGCCACG+TGG - tig0024002:57012-57031 Msa1413090:CDS 70.0%
ACCATCCAGGGCCACGTGGG+TGG - tig0024002:57016-57035 Msa1413090:CDS 70.0%
ACCACCCACGTGGCCCTGGA+TGG + tig0024002:57020-57039 None:intergenic 70.0%
!! GCGTGGTGGTGGGGTGTTGC+CGG + tig0024002:56377-56396 None:intergenic 70.0%
! GACACCGACGCGTGGTGGTG+GGG + tig0024002:56386-56405 None:intergenic 70.0%
GTGACACCGACGCGTGGTGG+TGG + tig0024002:56388-56407 None:intergenic 70.0%
TTCGGCGGCTGTGGAGTGGC+AGG - tig0024002:56592-56611 Msa1413090:intron 70.0%
GCGGCTGTGGAGTGGCAGGA+AGG - tig0024002:56596-56615 Msa1413090:intron 70.0%
GGTGACCATCCAGGGCCACG+TGG - tig0024002:57012-57031 Msa1413090:CDS 70.0%
ACCATCCAGGGCCACGTGGG+TGG - tig0024002:57016-57035 Msa1413090:CDS 70.0%
ACCACCCACGTGGCCCTGGA+TGG + tig0024002:57020-57039 None:intergenic 70.0%
! GCGCACCACCCACGTGGCCC+TGG + tig0024002:57024-57043 None:intergenic 80.0%
! GCGCACCACCCACGTGGCCC+TGG + tig0024002:57024-57043 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0024002 gene 55124 57155 55124 ID=Msa1413090;Name=Msa1413090
tig0024002 mRNA 55124 57155 55124 ID=Msa1413090-mRNA-1;Parent=Msa1413090;Name=Msa1413090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=118|1|0.5|1|1|1|2|0|325
tig0024002 exon 55124 56071 55124 ID=Msa1413090-mRNA-1:exon:20966;Parent=Msa1413090-mRNA-1
tig0024002 exon 57008 57155 57008 ID=Msa1413090-mRNA-1:exon:20965;Parent=Msa1413090-mRNA-1
tig0024002 five_prime_UTR 57038 57155 57038 ID=Msa1413090-mRNA-1:five_prime_utr;Parent=Msa1413090-mRNA-1
tig0024002 CDS 57008 57037 57008 ID=Msa1413090-mRNA-1:cds;Parent=Msa1413090-mRNA-1
tig0024002 CDS 55124 56071 55124 ID=Msa1413090-mRNA-1:cds;Parent=Msa1413090-mRNA-1
Gene Sequence

>Msa1413090

ATGGCGATACTTCATGGCAGTTGGGTCAAGCTTGATCAAAGAGGAATCTTGCAAGGAGCAAGAAGTTCACATGCTATTGCCGTCGTAGGACAGAAGGTCTATGCATTCGGTGGTGAGTTTGAGCCTCGTGTTCCTGTCGACAACAAGTTACATGTGTATGACCTAGATACATTGACATGGTCAGTAGCCAATGTATCCGGCAACACCCCACCACCACGCGTCGGTGTCACAATGGCTGCAGTTGGAGAAACCATCTATGTATTTGGTGGAAGAGATGCTGAACACAATGAACTCAACGAGCTCTTTTCTTTTGACACTAAAACCAACAATTGGGCATTGATTTCAAGTGGAGATATTGGGCCTCCTAACCGGAGCTACCACTCCATGACTGCCGATGAGCGACACGTGTATGTTTTCGGCGGCTGTGGAGTGGCAGGAAGGCTCAATGATTTATGGGCCTTTGATGTTGTAGATGGCAAGTGGGTGGAATTTCCATCTCCTGGTGAAAGTTGCAAGGGAAGAGGTGGGCCGGGCCTAACAGTTGCCCAAGGAAAAATATGGGTTGTGTATGGTTTTGCTGGAATGGAAGTGGATGACGTGCATTTCTTCGACCTGGCCCAAAAAACATGGGCCCAAGTGGAAACAAGCGGGCTTAAACCAACGGCCCGTAGTGTGTTTTCAACTTGTTTGATTGGGAAACACATAATTGTATATGGTGGGGAAATAGACCCTAGTGACCAAGGTCACATGGGTGCTGGTCAATTTTCAGGGGAGCTTTATGCATTAGACACGGAGACACTATCATGGACGAGGTTGGACGATAAGGTGGAATCAGGTGACCATCCAGGGCCACGTGGGTGGTGCGCATTTGCCGGTGCTAGCCGAGGCAGCCAAGAGGGATTATTAGTGTATGGTGGCAACTCACCTAGCAACGACAGGCTTGATGACATTTTCTTCCTTGCTCTTGCTCAAAGTTAG
Protein sequence

>Msa1413090

MAILHGSWVKLDQRGILQGARSSHAIAVVGQKVYAFGGEFEPRVPVDNKLHVYDLDTLTWSVANVSGNTPPPRVGVTMAAVGETIYVFGGRDAEHNELNELFSFDTKTNNWALISSGDIGPPNRSYHSMTADERHVYVFGGCGVAGRLNDLWAFDVVDGKWVEFPSPGESCKGRGGPGLTVAQGKIWVVYGFAGMEVDDVHFFDLAQKTWAQVETSGLKPTARSVFSTCLIGKHIIVYGGEIDPSDQGHMGAGQFSGELYALDTETLSWTRLDDKVESGDHPGPRGWCAFAGASRGSQEGLLVYGGNSPSNDRLDDIFFLALAQS*