AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1445900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445900 MtrunA17_Chr5g0432401 82.154 325 16 2 1 322 1 286 0.0 525
Msa1445900 MtrunA17_Chr5g0432351 71.250 320 92 0 2 321 1 320 1.03e-171 479
Msa1445900 MtrunA17_Chr5g0432341 70.938 320 93 0 2 321 1 320 9.96e-171 476
Msa1445900 MtrunA17_Chr5g0432331 70.625 320 94 0 2 321 32 351 3.09e-170 476
Msa1445900 MtrunA17_Chr3g0107881 66.242 314 104 2 10 321 10 323 1.02e-151 428
Msa1445900 MtrunA17_Chr4g0013171 59.937 317 121 4 7 321 8 320 1.10e-133 382
Msa1445900 MtrunA17_Chr4g0013181 62.712 295 104 4 29 321 62 352 1.49e-129 373
Msa1445900 MtrunA17_Chr3g0106921 59.621 317 118 7 10 321 8 319 2.25e-129 372
Msa1445900 MtrunA17_Chr3g0129051 58.075 322 127 5 2 320 4 320 3.89e-126 363
Msa1445900 MtrunA17_Chr5g0438021 58.413 315 122 6 10 321 16 324 6.12e-125 360
Msa1445900 MtrunA17_Chr3g0129061 59.048 315 120 6 10 320 11 320 1.22e-121 352
Msa1445900 MtrunA17_Chr4g0013201 55.108 323 137 5 2 321 20 337 1.72e-121 352
Msa1445900 MtrunA17_Chr5g0432441 56.535 329 128 7 2 320 1 324 1.10e-120 350
Msa1445900 MtrunA17_Chr3g0114451 54.517 321 136 5 6 321 2 317 1.38e-117 342
Msa1445900 MtrunA17_Chr2g0320051 54.574 317 138 5 7 321 5 317 1.84e-116 338
Msa1445900 MtrunA17_Chr2g0320061 53.943 317 140 5 7 321 5 317 3.07e-116 338
Msa1445900 MtrunA17_Chr3g0129041 57.911 316 124 6 10 321 11 321 3.71e-116 338
Msa1445900 MtrunA17_Chr4g0013191 53.538 325 141 7 2 321 20 339 2.42e-114 334
Msa1445900 MtrunA17_Chr2g0320071 54.114 316 138 6 8 321 6 316 5.40e-114 332
Msa1445900 MtrunA17_Chr7g0244451 53.548 310 138 4 13 321 11 315 1.41e-112 329
Msa1445900 MtrunA17_Chr1g0213061 51.077 325 149 6 2 321 1 320 1.59e-112 329
Msa1445900 MtrunA17_Chr2g0320101 53.943 317 139 6 7 321 5 316 2.38e-112 328
Msa1445900 MtrunA17_Chr2g0320031 51.420 317 147 5 8 321 6 318 1.49e-111 326
Msa1445900 MtrunA17_Chr7g0224371 54.110 292 129 4 30 321 35 321 1.78e-111 326
Msa1445900 MtrunA17_Chr3g0106901 53.185 314 141 4 9 321 14 322 1.09e-110 324
Msa1445900 MtrunA17_Chr2g0320091 51.242 322 150 6 2 321 1 317 9.37e-110 322
Msa1445900 MtrunA17_Chr7g0244461 50.633 316 142 5 15 321 1 311 9.73e-109 319
Msa1445900 MtrunA17_Chr4g0043391 50.629 318 148 6 9 321 10 323 6.16e-107 315
Msa1445900 MtrunA17_Chr4g0038171 49.684 316 150 6 11 321 9 320 7.43e-105 309
Msa1445900 MtrunA17_Chr8g0372601 51.307 306 137 5 24 321 28 329 1.50e-104 309
Msa1445900 MtrunA17_Chr4g0038151 48.896 317 152 6 10 321 9 320 1.39e-103 306
Msa1445900 MtrunA17_Chr5g0404721 50.492 305 139 5 25 321 29 329 2.17e-102 303
Msa1445900 MtrunA17_Chr4g0038161 47.975 321 154 7 6 321 7 319 1.37e-100 298
Msa1445900 MtrunA17_Chr1g0175561 47.273 330 161 7 2 322 1 326 1.77e-99 296
Msa1445900 MtrunA17_Chr2g0292091 46.395 319 160 4 11 321 9 324 8.04e-96 287
Msa1445900 MtrunA17_Chr1g0155611 49.013 304 144 4 26 321 46 346 1.27e-95 286
Msa1445900 MtrunA17_Chr7g0258811 46.584 322 159 6 9 321 53 370 3.71e-94 284
Msa1445900 MtrunA17_Chr4g0068621 47.712 306 150 5 22 321 34 335 9.25e-94 281
Msa1445900 MtrunA17_Chr2g0299691 47.436 312 148 6 21 321 51 357 1.90e-91 276
Msa1445900 MtrunA17_Chr2g0291751 47.022 319 158 4 11 321 14 329 4.61e-91 275
Msa1445900 MtrunA17_Chr4g0070951 46.933 326 158 6 6 321 8 328 1.20e-90 273
Msa1445900 MtrunA17_Chr5g0402571 46.828 331 160 8 1 321 1 325 1.58e-90 273
Msa1445900 MtrunA17_Chr5g0402581 46.526 331 161 8 1 321 1 325 9.06e-90 271
Msa1445900 MtrunA17_Chr2g0292211 45.938 320 162 5 10 321 24 340 3.29e-88 268
Msa1445900 MtrunA17_Chr2g0292151 45.455 319 163 4 11 321 14 329 3.65e-88 268
Msa1445900 MtrunA17_Chr4g0013821 46.906 307 149 5 22 321 24 323 7.20e-88 267
Msa1445900 MtrunA17_Chr4g0013721 47.525 303 145 5 26 321 100 395 3.10e-87 268
Msa1445900 MtrunA17_Chr5g0400331 47.097 310 145 7 26 321 26 330 1.51e-86 263
Msa1445900 MtrunA17_Chr2g0292181 45.455 319 163 4 11 321 23 338 2.26e-86 263
Msa1445900 MtrunA17_Chr2g0292271 43.750 320 169 4 11 322 14 330 1.13e-85 261
Msa1445900 MtrunA17_Chr2g0292111 45.426 317 160 6 11 318 14 326 4.10e-85 260
Msa1445900 MtrunA17_Chr2g0292251 45.130 308 158 4 22 321 24 328 5.14e-85 260
Msa1445900 MtrunA17_Chr2g0292241 44.514 319 166 4 11 321 14 329 5.43e-85 260
Msa1445900 MtrunA17_Chr2g0292261 46.082 319 161 5 11 321 14 329 2.84e-84 258
Msa1445900 MtrunA17_Chr2g0292101 47.059 306 151 5 24 321 23 325 3.14e-84 258
Msa1445900 MtrunA17_Chr1g0204011 43.574 319 163 9 11 321 12 321 2.37e-83 254
Msa1445900 MtrunA17_Chr5g0421411 46.831 284 137 7 49 321 4 284 2.21e-82 251
Msa1445900 MtrunA17_Chr1g0157051 43.161 329 168 9 2 322 1 318 2.57e-82 252
Msa1445900 MtrunA17_Chr2g0292291 43.614 321 169 6 11 322 15 332 1.41e-80 248
Msa1445900 MtrunA17_Chr5g0405991 43.438 320 162 10 10 321 7 315 7.97e-80 245
Msa1445900 MtrunA17_Chr1g0188431 40.299 335 176 8 2 321 1 326 2.85e-78 242
Msa1445900 MtrunA17_Chr6g0477071 41.176 323 178 9 2 321 28 341 1.09e-77 241
Msa1445900 MtrunA17_Chr3g0128061 39.938 323 178 7 10 321 8 325 2.19e-74 232
Msa1445900 MtrunA17_Chr8g0371381 41.935 310 161 9 20 321 20 318 1.78e-73 229
Msa1445900 MtrunA17_Chr7g0225221 40.881 318 176 9 9 320 7 318 6.29e-71 223
Msa1445900 MtrunA17_Chr1g0164891 41.584 303 162 7 30 321 93 391 8.90e-70 222
Msa1445900 MtrunA17_Chr2g0322861 41.141 333 175 10 1 321 62 385 1.94e-69 221
Msa1445900 MtrunA17_Chr6g0460711 39.308 318 179 8 8 319 2 311 7.62e-69 217
Msa1445900 MtrunA17_Chr1g0194151 37.805 328 189 6 5 321 9 332 2.13e-67 214
Msa1445900 MtrunA17_Chr1g0194271 37.910 335 186 5 5 321 9 339 3.20e-67 214
Msa1445900 MtrunA17_Chr7g0254201 38.870 301 170 7 24 319 18 309 7.94e-66 209
Msa1445900 MtrunA17_Chr2g0279041 41.196 301 155 9 30 318 31 321 2.18e-65 209
Msa1445900 MtrunA17_Chr7g0254231 39.322 295 162 8 30 319 26 308 3.33e-65 207
Msa1445900 MtrunA17_Chr4g0072091 41.667 312 153 11 25 320 23 321 3.58e-64 205
Msa1445900 MtrunA17_Chr3g0114461 51.579 190 88 3 133 321 5 191 4.83e-64 201
Msa1445900 MtrunA17_Chr7g0268501 40.549 328 169 11 8 321 4 319 5.00e-64 205
Msa1445900 MtrunA17_Chr7g0268521 40.549 328 169 11 8 321 4 319 5.00e-64 205
Msa1445900 MtrunA17_Chr4g0063671 39.815 324 170 11 10 320 7 318 2.48e-63 203
Msa1445900 MtrunA17_Chr1g0148021 40.120 334 179 11 2 321 1 327 2.68e-63 203
Msa1445900 MtrunA17_Chr4g0024121 37.195 328 187 8 2 318 3 322 1.87e-62 201
Msa1445900 MtrunA17_Chr5g0401431 37.346 324 184 9 9 318 7 325 2.89e-62 201
Msa1445900 MtrunA17_Chr2g0329641 39.088 307 164 9 26 319 36 332 7.54e-61 197
Msa1445900 MtrunA17_Chr4g0053871 38.679 318 174 10 13 318 12 320 5.24e-60 194
Msa1445900 MtrunA17_Chr1g0197411 35.604 323 189 9 10 318 9 326 6.82e-59 192
Msa1445900 MtrunA17_Chr4g0076211 38.333 300 163 10 31 321 46 332 1.02e-58 192
Msa1445900 MtrunA17_Chr8g0364291 36.646 322 188 8 7 318 5 320 1.22e-58 191
Msa1445900 MtrunA17_Chr2g0316481 36.905 336 166 9 26 321 76 405 1.18e-57 191
Msa1445900 MtrunA17_Chr4g0046131 36.585 328 188 10 4 318 22 342 5.28e-57 187
Msa1445900 MtrunA17_Chr5g0432361 80.000 110 17 1 213 322 5 109 5.64e-57 179
Msa1445900 MtrunA17_Chr6g0451571 34.985 323 194 8 9 321 17 333 5.82e-57 187
Msa1445900 MtrunA17_Chr4g0075241 33.993 303 188 5 26 321 29 326 1.21e-56 186
Msa1445900 MtrunA17_Chr2g0316791 36.310 336 168 9 26 321 76 405 2.22e-56 187
Msa1445900 MtrunA17_Chr5g0432321 71.552 116 33 0 150 265 17 132 6.08e-56 177
Msa1445900 MtrunA17_Chr2g0316831 36.607 336 167 9 26 321 112 441 6.47e-56 187
Msa1445900 MtrunA17_Chr2g0316191 36.499 337 167 9 26 321 76 406 1.00e-55 186
Msa1445900 MtrunA17_Chr2g0296621 37.304 319 173 10 17 321 35 340 3.47e-55 183
Msa1445900 MtrunA17_Chr6g0467161 37.086 302 173 9 26 321 45 335 9.17e-55 181
Msa1445900 MtrunA17_Chr6g0467121 38.361 305 173 10 21 321 69 362 1.70e-53 179
Msa1445900 MtrunA17_Chr2g0278671 37.097 310 172 10 22 318 20 319 2.10e-53 177
Msa1445900 MtrunA17_Chr2g0311251 35.714 336 169 11 26 321 11 339 4.55e-52 174
Msa1445900 MtrunA17_Chr2g0279061 41.379 261 131 9 70 318 12 262 1.47e-51 171
Msa1445900 MtrunA17_Chr1g0181511 34.098 305 187 7 24 321 25 322 9.42e-51 171
Msa1445900 MtrunA17_Chr6g0467251 35.152 330 193 10 2 318 3 324 1.33e-50 171
Msa1445900 MtrunA17_Chr3g0136751 34.251 327 196 6 2 318 1 318 2.99e-49 167
Msa1445900 MtrunA17_Chr2g0311241 32.891 377 165 10 26 321 60 429 3.78e-49 169
Msa1445900 MtrunA17_Chr1g0181431 33.010 309 185 8 24 321 25 322 4.13e-47 161
Msa1445900 MtrunA17_Chr2g0292281 44.811 212 99 6 117 321 15 215 7.93e-47 158
Msa1445900 MtrunA17_Chr1g0181481 32.686 309 186 8 24 321 25 322 3.91e-45 156
Msa1445900 MtrunA17_Chr4g0074851 31.889 323 204 7 2 318 12 324 6.34e-45 156
Msa1445900 MtrunA17_Chr5g0413051 32.131 305 185 10 30 319 77 374 2.93e-44 155
Msa1445900 MtrunA17_Chr3g0114491 64.220 109 38 1 26 134 18 125 3.54e-42 142
Msa1445900 MtrunA17_Chr2g0316811 36.220 254 131 7 26 252 50 299 6.30e-39 140
Msa1445900 MtrunA17_Chr4g0004591 29.268 328 157 9 23 321 74 355 6.59e-34 127
Msa1445900 MtrunA17_Chr2g0316141 34.155 284 136 9 72 321 11 277 8.67e-34 125
Msa1445900 MtrunA17_Chr2g0316181 34.155 284 136 9 72 321 11 277 8.67e-34 125
Msa1445900 MtrunA17_Chr3g0104101 40.000 140 73 5 193 321 9 148 1.05e-23 95.1
Msa1445900 MtrunA17_Chr1g0181501 26.776 183 117 5 149 321 13 188 3.08e-17 78.6
Msa1445900 MtrunA17_Chr6g0468731 52.055 73 30 3 65 137 22 89 7.32e-17 74.7
Msa1445900 MtrunA17_Chr1g0181491 38.710 124 71 4 15 137 1 120 1.36e-16 75.9
Msa1445900 MtrunA17_Chr4g0013811 47.368 76 38 1 138 213 6 79 2.43e-15 70.1
Msa1445900 MtrunA17_Chr1g0196191 54.412 68 29 2 68 135 27 92 3.01e-14 69.3
Msa1445900 MtrunA17_Chr2g0316771 28.729 181 89 5 179 321 7 185 3.44e-14 70.1
Msa1445900 MtrunA17_Chr3g0137751 25.316 316 155 12 9 303 57 312 1.00e-13 70.9
Msa1445900 MtrunA17_Chr4g0037131 28.195 266 139 10 47 304 22 243 1.01e-13 70.5
Msa1445900 MtrunA17_Chr7g0254181 38.776 98 54 3 98 195 31 122 1.60e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445900 AT5G05340.1 58.472 301 117 5 24 321 28 323 5.90e-123 356
Msa1445900 AT5G58400.1 52.848 316 139 7 10 320 13 323 3.48e-107 316
Msa1445900 AT5G58390.1 53.628 317 138 6 8 320 3 314 3.90e-106 313
Msa1445900 AT1G14540.1 50.000 316 151 6 9 321 3 314 6.20e-105 310
Msa1445900 AT1G14550.1 49.682 314 148 7 11 318 8 317 2.38e-102 303
Msa1445900 AT4G36430.1 49.342 304 142 5 26 321 30 329 1.19e-101 302
Msa1445900 AT2G18150.1 48.684 304 144 5 26 321 36 335 2.24e-101 301
Msa1445900 AT5G66390.1 46.809 329 163 5 1 321 8 332 7.58e-101 300
Msa1445900 AT2G18140.1 48.193 332 148 7 10 321 7 334 4.66e-100 298
Msa1445900 AT5G06720.1 47.205 322 159 5 9 322 15 333 6.68e-100 298
Msa1445900 AT5G06730.1 45.963 322 163 5 9 322 16 334 1.86e-95 287
Msa1445900 AT3G50990.1 48.693 306 145 6 24 321 39 340 6.89e-95 285
Msa1445900 AT1G44970.1 48.684 304 145 4 26 321 45 345 1.28e-94 285
Msa1445900 AT4G08770.1 47.097 310 151 6 22 321 20 326 1.39e-89 271
Msa1445900 AT4G08780.1 45.806 310 155 6 22 321 20 326 5.45e-88 268
Msa1445900 AT2G38380.1 46.602 309 153 5 22 321 27 332 1.09e-87 267
Msa1445900 AT1G49570.1 47.697 304 143 7 26 318 48 346 1.91e-87 266
Msa1445900 AT2G38390.1 46.602 309 153 5 22 321 27 332 8.16e-87 265
Msa1445900 AT5G19880.1 45.921 331 158 8 6 321 4 328 1.37e-86 263
Msa1445900 AT1G68850.1 41.742 333 171 8 9 321 5 334 1.58e-86 263
Msa1445900 AT4G16270.1 48.173 301 140 7 30 321 54 347 2.78e-86 263
Msa1445900 AT2G22420.1 42.368 321 170 6 8 321 6 318 6.20e-86 262
Msa1445900 AT3G32980.1 46.129 310 154 7 22 321 27 333 1.19e-85 262
Msa1445900 AT5G51890.1 44.109 331 164 11 2 321 1 321 5.03e-85 259
Msa1445900 AT3G49120.1 46.104 308 153 7 24 321 30 334 7.01e-84 257
Msa1445900 AT3G49110.1 45.806 310 155 7 22 321 29 335 9.27e-84 257
Msa1445900 AT2G35380.1 46.201 329 158 7 7 321 11 334 1.00e-83 256
Msa1445900 AT5G42180.1 44.923 325 152 11 10 322 8 317 4.28e-83 254
Msa1445900 AT5G19890.1 46.130 323 155 9 9 321 13 326 4.64e-83 254
Msa1445900 AT3G01190.1 43.161 329 165 10 2 319 1 318 2.36e-76 237
Msa1445900 AT1G71695.1 43.750 304 158 7 21 318 39 335 2.40e-74 233
Msa1445900 AT4G33420.1 41.456 316 173 9 9 321 18 324 4.39e-72 226
Msa1445900 AT4G33420.2 41.456 316 173 9 9 321 65 371 1.74e-71 226
Msa1445900 AT5G15180.1 41.284 327 168 10 10 321 11 328 5.26e-71 223
Msa1445900 AT3G03670.1 38.871 319 180 7 10 319 6 318 1.21e-67 214
Msa1445900 AT5G17820.1 39.498 319 171 10 10 320 7 311 8.75e-67 212
Msa1445900 AT4G26010.1 39.809 314 175 10 9 319 4 306 9.33e-67 212
Msa1445900 AT4G11290.1 39.252 321 178 8 9 318 8 322 1.26e-66 212
Msa1445900 AT4G26010.2 39.809 314 175 10 9 319 32 334 1.44e-66 212
Msa1445900 AT1G05240.1 38.796 299 166 7 30 318 30 321 4.43e-66 211
Msa1445900 AT1G05250.1 38.796 299 166 7 30 318 30 321 4.43e-66 211
Msa1445900 AT5G17820.2 39.498 319 171 10 10 320 60 364 6.95e-66 211
Msa1445900 AT3G21770.1 39.683 315 171 9 15 318 18 324 8.99e-65 207
Msa1445900 AT1G05260.1 37.700 313 180 8 15 318 15 321 2.15e-64 206
Msa1445900 AT5G40150.1 37.785 307 181 6 17 318 23 324 4.30e-64 206
Msa1445900 AT5G64120.1 41.472 299 158 8 30 321 39 327 4.35e-64 206
Msa1445900 AT4G37530.1 39.610 308 170 8 22 318 23 325 8.90e-63 202
Msa1445900 AT3G28200.1 37.374 297 177 6 26 318 21 312 4.76e-62 200
Msa1445900 AT2G35380.2 47.581 248 111 7 88 321 4 246 9.20e-62 197
Msa1445900 AT5G14130.1 36.449 321 182 8 10 318 16 326 9.01e-61 197
Msa1445900 AT1G34510.1 39.274 303 172 9 19 319 14 306 2.27e-60 196
Msa1445900 AT5G14130.2 36.449 321 182 8 10 318 57 367 2.69e-60 197
Msa1445900 AT4G37520.1 38.889 306 171 8 24 318 25 325 3.58e-60 196
Msa1445900 AT2G41480.1 36.585 328 182 10 10 321 10 327 7.62e-60 195
Msa1445900 AT1G24110.1 35.110 319 189 8 10 318 8 318 2.14e-58 191
Msa1445900 AT4G37520.2 38.562 306 169 9 24 318 25 322 4.49e-58 190
Msa1445900 AT4G33870.1 33.333 342 177 9 24 321 66 400 1.09e-57 191
Msa1445900 AT4G25980.1 36.474 329 190 9 2 318 1 322 6.62e-57 187
Msa1445900 AT1G30870.1 37.179 312 174 9 19 320 44 343 1.03e-56 187
Msa1445900 AT5G39580.1 39.062 320 176 11 11 321 9 318 1.28e-56 186
Msa1445900 AT5G67400.1 37.349 332 186 10 2 318 1 325 3.12e-56 185
Msa1445900 AT2G18980.1 36.747 332 188 9 2 321 1 322 5.55e-56 184
Msa1445900 AT1G77100.1 39.557 316 179 10 9 318 6 315 1.26e-55 184
Msa1445900 AT3G49960.1 37.461 323 182 10 9 318 10 325 1.44e-55 184
Msa1445900 AT5G22410.1 35.216 301 174 9 30 319 32 322 4.57e-55 182
Msa1445900 AT5G47000.1 34.069 317 196 7 9 318 16 326 6.06e-55 182
Msa1445900 AT4G17690.1 38.742 302 167 9 26 318 26 318 8.37e-55 182
Msa1445900 AT4G30170.1 37.580 314 168 11 23 321 24 324 8.69e-55 181
Msa1445900 AT5G64100.1 39.274 303 160 11 28 318 37 327 4.23e-54 180
Msa1445900 AT2G39040.1 39.297 313 164 11 26 321 46 349 7.06e-54 180
Msa1445900 AT5G64110.1 39.818 329 168 12 12 321 12 329 7.41e-54 179
Msa1445900 AT4G37530.2 40.541 259 140 7 22 269 23 278 9.80e-54 177
Msa1445900 AT2G24800.1 35.484 310 178 7 24 321 29 328 2.43e-51 173
Msa1445900 AT2G34060.1 36.337 344 184 14 4 319 7 343 5.78e-51 172
Msa1445900 AT4G31760.1 32.635 334 202 7 2 321 1 325 1.69e-50 171
Msa1445900 AT2G43480.1 35.443 316 178 11 21 321 30 334 7.61e-50 169
Msa1445900 AT5G24070.1 35.599 309 173 11 26 319 35 332 4.54e-48 164
Msa1445900 AT3G17070.1 32.143 336 203 10 4 321 10 338 9.12e-47 161
Msa1445900 AT2G37130.1 32.131 305 196 6 23 321 27 326 7.08e-45 156
Msa1445900 AT4G21960.1 32.776 299 189 6 26 318 31 323 8.83e-45 155
Msa1445900 AT2G37130.2 32.107 299 192 6 29 321 2 295 1.74e-44 154
Msa1445900 AT4G25980.2 41.000 200 110 6 2 200 46 238 1.19e-37 136
Msa1445900 AT5G39580.2 38.667 225 122 8 11 227 9 225 8.30e-35 127
Msa1445900 AT3G17070.2 33.083 266 158 10 68 321 18 275 3.95e-34 126
Msa1445900 AT2G24800.2 41.520 171 93 3 24 194 29 192 7.99e-32 119
Msa1445900 AT4G32320.1 27.857 280 135 10 37 303 96 321 1.67e-14 73.6
Msa1445900 AT4G35000.1 28.309 272 131 13 47 304 21 242 1.48e-13 70.5
Msa1445900 AT3G42570.1 31.469 143 82 5 54 194 19 147 1.21e-11 62.4
Msa1445900 AT4G35970.1 25.926 270 139 11 47 304 20 240 2.16e-11 63.9
Msa1445900 AT4G35970.2 30.000 180 97 7 47 218 20 178 2.23e-11 63.2

Find 60 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTGATTGAATTGATATT+TGG 0.149569 tig0031232:+39542 Msa1445900:intergenic
TTCTGATCAACAATTGTTTA+AGG 0.149991 tig0031232:-38866 Msa1445900:CDS
AAAGACCTTGTAGCTCTTTC+TGG 0.185151 tig0031232:-39096 Msa1445900:CDS
TTGTTCTCCATGCAATTCTT+AGG 0.198915 tig0031232:-40869 Msa1445900:CDS
ATGGAGAACAACTGACTTTA+TGG 0.215067 tig0031232:+40881 Msa1445900:intergenic
TTGTTGTCTCCACCATTTCT+AGG 0.241506 tig0031232:+38970 Msa1445900:intergenic
TTTCTGGTGGTCACACTATA+GGG 0.295800 tig0031232:-39080 Msa1445900:CDS
CTTTCTGGTGGTCACACTAT+AGG 0.303710 tig0031232:-39081 Msa1445900:CDS
GGGAACATCAAGCCTCTTAC+TGG 0.307586 tig0031232:-38751 Msa1445900:CDS
AATATTCCTTGTCCTTGTTA+TGG 0.317798 tig0031232:-40979 Msa1445900:CDS
TCTGATCAACAATTGTTTAA+GGG 0.352120 tig0031232:-38865 Msa1445900:CDS
TCGCCTTGTTTCCCAGTAAG+AGG 0.368669 tig0031232:+38739 Msa1445900:intergenic
TAAGACTTCTTTGATCAAGA+TGG 0.398788 tig0031232:-38773 Msa1445900:CDS
CTTAAAGATGCTGCAAAAGT+AGG 0.404137 tig0031232:+39003 Msa1445900:intergenic
AGGTAGTGAAAGTGACAAAT+TGG 0.414766 tig0031232:-38839 Msa1445900:CDS
ATAGAGATTTGCTATACAAA+AGG 0.417509 tig0031232:-38900 Msa1445900:CDS
TGTTCTCCATGCAATTCTTA+GGG 0.432270 tig0031232:-40868 Msa1445900:CDS
AGGAAGACTTGTCCTAGAAA+TGG 0.434931 tig0031232:-38982 Msa1445900:CDS
TAGAGATTTGCTATACAAAA+GGG 0.436085 tig0031232:-38899 Msa1445900:CDS
AAGACTTCTTTGATCAAGAT+GGG 0.455664 tig0031232:-38772 Msa1445900:CDS
AAATCTCTAGCAAAAGCTAA+AGG 0.455926 tig0031232:+38796 Msa1445900:intergenic
ACAATTGTTGATCAGAATGA+AGG 0.465894 tig0031232:+38872 Msa1445900:intergenic
AATCTCTAGCAAAAGCTAAA+GGG 0.471645 tig0031232:+38797 Msa1445900:intergenic
TTATGGTTGGTAATGCTTGA+GGG 0.474257 tig0031232:+40898 Msa1445900:intergenic
TTACATTGACGAAGCAATCA+TGG 0.486125 tig0031232:+40808 Msa1445900:intergenic
GATGATACCCCAAATTTCAC+TGG 0.487620 tig0031232:-39581 Msa1445900:CDS
CAACAATTGTTTAAGGGACT+AGG 0.490480 tig0031232:-38859 Msa1445900:CDS
GGAGTAAGCCATGCGTTGGT+AGG 0.494219 tig0031232:+40942 Msa1445900:intergenic
TTAAAGATGCTGCAAAAGTA+GGG 0.540881 tig0031232:+39004 Msa1445900:intergenic
GAGTAAGCCATGCGTTGGTA+GGG 0.543916 tig0031232:+40943 Msa1445900:intergenic
GTCACACTATAGGGTTTGCT+AGG 0.550006 tig0031232:-39071 Msa1445900:CDS
TTTCTCCCCAGTGAAATTTG+GGG 0.550604 tig0031232:+39574 Msa1445900:intergenic
AGCTGTGAGAAGTTGAATGT+TGG 0.551695 tig0031232:+39153 Msa1445900:intergenic
CCAAATATCAATTCAATCAG+AGG 0.553734 tig0031232:-39542 Msa1445900:CDS
ATTTCAAATTTCAAATCACA+AGG 0.563348 tig0031232:-39129 Msa1445900:CDS
TACAGAATCACGAGCTGCTG+TGG 0.565085 tig0031232:+39439 Msa1445900:intergenic
GGAACATCAAGCCTCTTACT+GGG 0.568377 tig0031232:-38750 Msa1445900:CDS
GAGAAGTTGAATGTTGGAGA+TGG 0.571079 tig0031232:+39159 Msa1445900:intergenic
AGAACAACTGACTTTATGGT+TGG 0.571386 tig0031232:+40885 Msa1445900:intergenic
TAGTGAAAGTGACAAATTGG+TGG 0.576660 tig0031232:-38836 Msa1445900:CDS
TTTATGGTTGGTAATGCTTG+AGG 0.580918 tig0031232:+40897 Msa1445900:intergenic
GACCTTGTAGCTCTTTCTGG+TGG 0.589326 tig0031232:-39093 Msa1445900:CDS
ATGATACCCCAAATTTCACT+GGG 0.597994 tig0031232:-39580 Msa1445900:CDS
ATGAGGAGTAAGCCATGCGT+TGG 0.599175 tig0031232:+40938 Msa1445900:intergenic
TATTGATCCCTACCAACGCA+TGG 0.600690 tig0031232:-40950 Msa1445900:CDS
AAGCCTCTTACTGGGAAACA+AGG 0.600820 tig0031232:-38742 Msa1445900:CDS
AAGACTTGTCCTAGAAATGG+TGG 0.602280 tig0031232:-38979 Msa1445900:CDS
ATATCAGCACAAGATACCAC+AGG 0.608181 tig0031232:+39467 Msa1445900:intergenic
AGATTCGACTCAATTGCAGA+AGG 0.610654 tig0031232:-38717 Msa1445900:CDS
CTTGTAGGAGTGAAATCAAG+TGG 0.621819 tig0031232:+38940 Msa1445900:intergenic
AGACTTCTTTGATCAAGATG+GGG 0.622644 tig0031232:-38771 Msa1445900:CDS
GCAGTTGATAAAGTATGCAA+AGG 0.624221 tig0031232:-39491 Msa1445900:CDS
AGAGATTTGCTATACAAAAG+GGG 0.637378 tig0031232:-38898 Msa1445900:CDS
GATTCGACTCAATTGCAGAA+GGG 0.642604 tig0031232:-38716 Msa1445900:CDS
GACCACCAGAAAGAGCTACA+AGG 0.644551 tig0031232:+39091 Msa1445900:intergenic
TCAATAAAGTGACCATAACA+AGG 0.645816 tig0031232:+40967 Msa1445900:intergenic
AAGTGACCATAACAAGGACA+AGG 0.682002 tig0031232:+40973 Msa1445900:intergenic
TAAAGTATGCAAAGGCCCTG+TGG 0.699533 tig0031232:-39483 Msa1445900:CDS
TATCAGCACAAGATACCACA+GGG 0.727618 tig0031232:+39468 Msa1445900:intergenic
TGATACCCCAAATTTCACTG+GGG 0.801478 tig0031232:-39579 Msa1445900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTCAAAATTATTATTATTT+AGG + tig0031232:39167-39186 Msa1445900:intergenic 10.0%
!! CTTCAAAATTATTATTATTT+AGG + tig0031232:39167-39186 Msa1445900:intergenic 10.0%
!!! TTTTGTATTTGAATTGATTT+TGG - tig0031232:39267-39286 Msa1445900:intron 15.0%
!!! ACTTCATTTTAAAAATTGTA+TGG + tig0031232:39569-39588 Msa1445900:intergenic 15.0%
!!! TACAATTTTTAAAATGAAGT+TGG - tig0031232:39569-39588 Msa1445900:CDS 15.0%
!!! AATCTTAATTATTTTATGCA+GGG - tig0031232:39670-39689 Msa1445900:intron 15.0%
!!! ATATCAATGATTGAAATTTT+AGG - tig0031232:40083-40102 Msa1445900:intron 15.0%
!!! TATCAATGATTGAAATTTTA+GGG - tig0031232:40084-40103 Msa1445900:intron 15.0%
!! ATTTAAAAATATGTCACAAA+AGG + tig0031232:40314-40333 Msa1445900:intergenic 15.0%
!!! TTTTGTATTTGAATTGATTT+TGG - tig0031232:39267-39286 Msa1445900:intron 15.0%
!!! ACTTCATTTTAAAAATTGTA+TGG + tig0031232:39569-39588 Msa1445900:intergenic 15.0%
!!! TACAATTTTTAAAATGAAGT+TGG - tig0031232:39569-39588 Msa1445900:CDS 15.0%
!!! AATCTTAATTATTTTATGCA+GGG - tig0031232:39670-39689 Msa1445900:intron 15.0%
!!! ATATCAATGATTGAAATTTT+AGG - tig0031232:40083-40102 Msa1445900:intron 15.0%
!!! TATCAATGATTGAAATTTTA+GGG - tig0031232:40084-40103 Msa1445900:intron 15.0%
!! ATTTAAAAATATGTCACAAA+AGG + tig0031232:40314-40333 Msa1445900:intergenic 15.0%
!! CAAACTTTATCATAAAAATG+AGG + tig0031232:38792-38811 Msa1445900:intergenic 20.0%
!! TATGTAACACATTAACTTTA+TGG - tig0031232:39015-39034 Msa1445900:CDS 20.0%
!!! ATGTTTGAAATTGTCAATTT+AGG + tig0031232:39601-39620 Msa1445900:intergenic 20.0%
!!! GAATCTTAATTATTTTATGC+AGG - tig0031232:39669-39688 Msa1445900:intron 20.0%
!! AAGAAAATTATTGAAGCTAA+CGG + tig0031232:39771-39790 Msa1445900:intergenic 20.0%
!!! TGACATATTTTTAAATGCAT+TGG - tig0031232:40318-40337 Msa1445900:intron 20.0%
!!! ACTATAACGCTTTAAAATAA+AGG + tig0031232:40390-40409 Msa1445900:intergenic 20.0%
!!! TTTTAAAGCGTTATAGTTTT+AGG - tig0031232:40393-40412 Msa1445900:intron 20.0%
!!! TTTAAAGCGTTATAGTTTTA+GGG - tig0031232:40394-40413 Msa1445900:intron 20.0%
!!! ATTTTTCTACAATGTGTTAT+TGG - tig0031232:40478-40497 Msa1445900:intron 20.0%
!!! TTTTTCTACAATGTGTTATT+GGG - tig0031232:40479-40498 Msa1445900:intron 20.0%
!! ATTTCAAATTTCAAATCACA+AGG - tig0031232:40581-40600 Msa1445900:intron 20.0%
!! CAAACTTTATCATAAAAATG+AGG + tig0031232:38792-38811 Msa1445900:intergenic 20.0%
!! TATGTAACACATTAACTTTA+TGG - tig0031232:39015-39034 Msa1445900:CDS 20.0%
!!! ATGTTTGAAATTGTCAATTT+AGG + tig0031232:39601-39620 Msa1445900:intergenic 20.0%
!!! GAATCTTAATTATTTTATGC+AGG - tig0031232:39669-39688 Msa1445900:intron 20.0%
!! AAGAAAATTATTGAAGCTAA+CGG + tig0031232:39771-39790 Msa1445900:intergenic 20.0%
!!! TGACATATTTTTAAATGCAT+TGG - tig0031232:40318-40337 Msa1445900:intron 20.0%
!!! ACTATAACGCTTTAAAATAA+AGG + tig0031232:40390-40409 Msa1445900:intergenic 20.0%
!!! TTTTAAAGCGTTATAGTTTT+AGG - tig0031232:40393-40412 Msa1445900:intron 20.0%
!!! TTTAAAGCGTTATAGTTTTA+GGG - tig0031232:40394-40413 Msa1445900:intron 20.0%
!!! ATTTTTCTACAATGTGTTAT+TGG - tig0031232:40478-40497 Msa1445900:intron 20.0%
!!! TTTTTCTACAATGTGTTATT+GGG - tig0031232:40479-40498 Msa1445900:intron 20.0%
!! ATTTCAAATTTCAAATCACA+AGG - tig0031232:40581-40600 Msa1445900:intron 20.0%
! CTAAAATTATGTTTAGTCAG+AGG + tig0031232:39230-39249 Msa1445900:intergenic 25.0%
! ATGTTGTCTTACCTAATTAT+TGG - tig0031232:39745-39764 Msa1445900:intron 25.0%
!! CTTAATTGTGTTTTGTGATT+TGG - tig0031232:39876-39895 Msa1445900:intron 25.0%
!! ACTTAGACACAATCAATTTT+TGG + tig0031232:39916-39935 Msa1445900:intergenic 25.0%
! AACTGTTAAAAGTGACAAAA+TGG + tig0031232:40446-40465 Msa1445900:intergenic 25.0%
!!! ATTTTGTCACTTTTAACAGT+TGG - tig0031232:40445-40464 Msa1445900:intron 25.0%
!!! TTTTGTCACTTTTAACAGTT+GGG - tig0031232:40446-40465 Msa1445900:intron 25.0%
! AACACATTGTAGAAAAATTG+TGG + tig0031232:40476-40495 Msa1445900:intergenic 25.0%
!! TATGTATTTTCAACTCTTGT+AGG + tig0031232:40788-40807 Msa1445900:intergenic 25.0%
!!! ATAGAGATTTGCTATACAAA+AGG - tig0031232:40810-40829 Msa1445900:intron 25.0%
!!! TAGAGATTTGCTATACAAAA+GGG - tig0031232:40811-40830 Msa1445900:intron 25.0%
! TTCTGATCAACAATTGTTTA+AGG - tig0031232:40844-40863 Msa1445900:CDS 25.0%
! TCTGATCAACAATTGTTTAA+GGG - tig0031232:40845-40864 Msa1445900:CDS 25.0%
! CTAAAATTATGTTTAGTCAG+AGG + tig0031232:39230-39249 Msa1445900:intergenic 25.0%
! ATGTTGTCTTACCTAATTAT+TGG - tig0031232:39745-39764 Msa1445900:intron 25.0%
!! CTTAATTGTGTTTTGTGATT+TGG - tig0031232:39876-39895 Msa1445900:intron 25.0%
!! ACTTAGACACAATCAATTTT+TGG + tig0031232:39916-39935 Msa1445900:intergenic 25.0%
! AACTGTTAAAAGTGACAAAA+TGG + tig0031232:40446-40465 Msa1445900:intergenic 25.0%
!!! ATTTTGTCACTTTTAACAGT+TGG - tig0031232:40445-40464 Msa1445900:intron 25.0%
!!! TTTTGTCACTTTTAACAGTT+GGG - tig0031232:40446-40465 Msa1445900:intron 25.0%
! AACACATTGTAGAAAAATTG+TGG + tig0031232:40476-40495 Msa1445900:intergenic 25.0%
!! TATGTATTTTCAACTCTTGT+AGG + tig0031232:40788-40807 Msa1445900:intergenic 25.0%
!!! ATAGAGATTTGCTATACAAA+AGG - tig0031232:40810-40829 Msa1445900:intron 25.0%
!!! TAGAGATTTGCTATACAAAA+GGG - tig0031232:40811-40830 Msa1445900:intron 25.0%
! TTCTGATCAACAATTGTTTA+AGG - tig0031232:40844-40863 Msa1445900:CDS 25.0%
! TCTGATCAACAATTGTTTAA+GGG - tig0031232:40845-40864 Msa1445900:CDS 25.0%
AATATTCCTTGTCCTTGTTA+TGG - tig0031232:38731-38750 Msa1445900:CDS 30.0%
TCAATAAAGTGACCATAACA+AGG + tig0031232:38746-38765 Msa1445900:intergenic 30.0%
ATAATGTTGAGAGATGTTGT+AGG + tig0031232:38984-39003 Msa1445900:intergenic 30.0%
TTAAGTCAATAAAACCGCAA+TGG + tig0031232:39100-39119 Msa1445900:intergenic 30.0%
ACTAAAACCATCTTCAATGT+TGG - tig0031232:39432-39451 Msa1445900:intron 30.0%
CATAAAACCAACATTGAAGA+TGG + tig0031232:39442-39461 Msa1445900:intergenic 30.0%
! TTAAATTTTGCTCCACTAGA+AGG - tig0031232:39489-39508 Msa1445900:CDS 30.0%
! TAAATTTTGCTCCACTAGAA+GGG - tig0031232:39490-39509 Msa1445900:CDS 30.0%
! GATTTTTCATATCAATGTGC+TGG - tig0031232:39640-39659 Msa1445900:intron 30.0%
!!! TTGAAATTTTAGGGTTGTGA+TGG - tig0031232:40093-40112 Msa1445900:intron 30.0%
CCTCTGATTGAATTGATATT+TGG + tig0031232:40171-40190 Msa1445900:intergenic 30.0%
CCAAATATCAATTCAATCAG+AGG - tig0031232:40168-40187 Msa1445900:intron 30.0%
! TAAATGCATTGGTGTCTTAT+TGG - tig0031232:40329-40348 Msa1445900:intron 30.0%
!! ATTTTGTGTTTGAGATGTGT+CGG + tig0031232:40364-40383 Msa1445900:intergenic 30.0%
TTAAAGATGCTGCAAAAGTA+GGG + tig0031232:40709-40728 Msa1445900:intergenic 30.0%
!! AGAGATTTGCTATACAAAAG+GGG - tig0031232:40812-40831 Msa1445900:CDS 30.0%
ACAATTGTTGATCAGAATGA+AGG + tig0031232:40841-40860 Msa1445900:intergenic 30.0%
AATCTCTAGCAAAAGCTAAA+GGG + tig0031232:40916-40935 Msa1445900:intergenic 30.0%
AAATCTCTAGCAAAAGCTAA+AGG + tig0031232:40917-40936 Msa1445900:intergenic 30.0%
TAAGACTTCTTTGATCAAGA+TGG - tig0031232:40937-40956 Msa1445900:CDS 30.0%
AAGACTTCTTTGATCAAGAT+GGG - tig0031232:40938-40957 Msa1445900:CDS 30.0%
AATATTCCTTGTCCTTGTTA+TGG - tig0031232:38731-38750 Msa1445900:CDS 30.0%
TCAATAAAGTGACCATAACA+AGG + tig0031232:38746-38765 Msa1445900:intergenic 30.0%
ATAATGTTGAGAGATGTTGT+AGG + tig0031232:38984-39003 Msa1445900:intergenic 30.0%
TTAAGTCAATAAAACCGCAA+TGG + tig0031232:39100-39119 Msa1445900:intergenic 30.0%
ACTAAAACCATCTTCAATGT+TGG - tig0031232:39432-39451 Msa1445900:intron 30.0%
CATAAAACCAACATTGAAGA+TGG + tig0031232:39442-39461 Msa1445900:intergenic 30.0%
! TTAAATTTTGCTCCACTAGA+AGG - tig0031232:39489-39508 Msa1445900:CDS 30.0%
! TAAATTTTGCTCCACTAGAA+GGG - tig0031232:39490-39509 Msa1445900:CDS 30.0%
! GATTTTTCATATCAATGTGC+TGG - tig0031232:39640-39659 Msa1445900:intron 30.0%
!!! TTGAAATTTTAGGGTTGTGA+TGG - tig0031232:40093-40112 Msa1445900:intron 30.0%
CCTCTGATTGAATTGATATT+TGG + tig0031232:40171-40190 Msa1445900:intergenic 30.0%
CCAAATATCAATTCAATCAG+AGG - tig0031232:40168-40187 Msa1445900:intron 30.0%
! TAAATGCATTGGTGTCTTAT+TGG - tig0031232:40329-40348 Msa1445900:intron 30.0%
!! ATTTTGTGTTTGAGATGTGT+CGG + tig0031232:40364-40383 Msa1445900:intergenic 30.0%
TTAAAGATGCTGCAAAAGTA+GGG + tig0031232:40709-40728 Msa1445900:intergenic 30.0%
!! AGAGATTTGCTATACAAAAG+GGG - tig0031232:40812-40831 Msa1445900:CDS 30.0%
ACAATTGTTGATCAGAATGA+AGG + tig0031232:40841-40860 Msa1445900:intergenic 30.0%
AATCTCTAGCAAAAGCTAAA+GGG + tig0031232:40916-40935 Msa1445900:intergenic 30.0%
AAATCTCTAGCAAAAGCTAA+AGG + tig0031232:40917-40936 Msa1445900:intergenic 30.0%
TAAGACTTCTTTGATCAAGA+TGG - tig0031232:40937-40956 Msa1445900:CDS 30.0%
AAGACTTCTTTGATCAAGAT+GGG - tig0031232:40938-40957 Msa1445900:CDS 30.0%
!! TTATGGTTGGTAATGCTTGA+GGG + tig0031232:38815-38834 Msa1445900:intergenic 35.0%
!! TTTATGGTTGGTAATGCTTG+AGG + tig0031232:38816-38835 Msa1445900:intergenic 35.0%
! AGAACAACTGACTTTATGGT+TGG + tig0031232:38828-38847 Msa1445900:intergenic 35.0%
! ATGGAGAACAACTGACTTTA+TGG + tig0031232:38832-38851 Msa1445900:intergenic 35.0%
TTGTTCTCCATGCAATTCTT+AGG - tig0031232:38841-38860 Msa1445900:CDS 35.0%
TGTTCTCCATGCAATTCTTA+GGG - tig0031232:38842-38861 Msa1445900:CDS 35.0%
! GTTTTTCCCTAAGAATTGCA+TGG + tig0031232:38851-38870 Msa1445900:intergenic 35.0%
ATTCTTAGGGAAAAACGCAT+TGG - tig0031232:38855-38874 Msa1445900:CDS 35.0%
TTACATTGACGAAGCAATCA+TGG + tig0031232:38905-38924 Msa1445900:intergenic 35.0%
! TCGATATTTTTCGTCCATTG+CGG - tig0031232:39043-39062 Msa1445900:CDS 35.0%
! TCGATATTTTTCGTCCATTG+CGG - tig0031232:39043-39062 Msa1445900:CDS 35.0%
TACATGTTGTAGAAACCTAG+AGG - tig0031232:39194-39213 Msa1445900:CDS 35.0%
AGAGGATAATAATCACCTCT+AGG + tig0031232:39212-39231 Msa1445900:intergenic 35.0%
!!! TTCTAGTTTTTTTCGAACCC+CGG - tig0031232:39305-39324 Msa1445900:intron 35.0%
GACAATGCATAGTATATGCA+AGG + tig0031232:39332-39351 Msa1445900:intergenic 35.0%
TTATGCATGCATGGAAATCA+TGG + tig0031232:39519-39538 Msa1445900:intergenic 35.0%
GATTTCCATGCATGCATAAA+TGG - tig0031232:39520-39539 Msa1445900:CDS 35.0%
TAGTACCATTTATGCATGCA+TGG + tig0031232:39528-39547 Msa1445900:intergenic 35.0%
AATTGTATGGATGACCCTTA+GGG + tig0031232:39556-39575 Msa1445900:intergenic 35.0%
AAATTGTATGGATGACCCTT+AGG + tig0031232:39557-39576 Msa1445900:intergenic 35.0%
! TGTGATTTGGATTTGCAATG+TGG - tig0031232:39889-39908 Msa1445900:intron 35.0%
ATGATACCCCAAATTTCACT+GGG - tig0031232:40130-40149 Msa1445900:intron 35.0%
! TTTTCTCCCCAGTGAAATTT+GGG + tig0031232:40140-40159 Msa1445900:intergenic 35.0%
! TTCAATCAGAGGATTTTCTG+TGG - tig0031232:40179-40198 Msa1445900:intron 35.0%
!! GCAGTTGATAAAGTATGCAA+AGG - tig0031232:40219-40238 Msa1445900:intron 35.0%
! CAAAAGGTGTACACTTACTA+TGG + tig0031232:40298-40317 Msa1445900:intergenic 35.0%
!! TTTTGTGTTTGAGATGTGTC+GGG + tig0031232:40363-40382 Msa1445900:intergenic 35.0%
CTTAAAGATGCTGCAAAAGT+AGG + tig0031232:40710-40729 Msa1445900:intergenic 35.0%
!! CTACTTTTGCAGCATCTTTA+AGG - tig0031232:40708-40727 Msa1445900:intron 35.0%
CAACAATTGTTTAAGGGACT+AGG - tig0031232:40851-40870 Msa1445900:CDS 35.0%
AGGTAGTGAAAGTGACAAAT+TGG - tig0031232:40871-40890 Msa1445900:CDS 35.0%
TAGTGAAAGTGACAAATTGG+TGG - tig0031232:40874-40893 Msa1445900:CDS 35.0%
AGACTTCTTTGATCAAGATG+GGG - tig0031232:40939-40958 Msa1445900:CDS 35.0%
!! TTATGGTTGGTAATGCTTGA+GGG + tig0031232:38815-38834 Msa1445900:intergenic 35.0%
!! TTTATGGTTGGTAATGCTTG+AGG + tig0031232:38816-38835 Msa1445900:intergenic 35.0%
! AGAACAACTGACTTTATGGT+TGG + tig0031232:38828-38847 Msa1445900:intergenic 35.0%
! ATGGAGAACAACTGACTTTA+TGG + tig0031232:38832-38851 Msa1445900:intergenic 35.0%
TTGTTCTCCATGCAATTCTT+AGG - tig0031232:38841-38860 Msa1445900:CDS 35.0%
TGTTCTCCATGCAATTCTTA+GGG - tig0031232:38842-38861 Msa1445900:CDS 35.0%
! GTTTTTCCCTAAGAATTGCA+TGG + tig0031232:38851-38870 Msa1445900:intergenic 35.0%
ATTCTTAGGGAAAAACGCAT+TGG - tig0031232:38855-38874 Msa1445900:CDS 35.0%
TTACATTGACGAAGCAATCA+TGG + tig0031232:38905-38924 Msa1445900:intergenic 35.0%
! TCGATATTTTTCGTCCATTG+CGG - tig0031232:39043-39062 Msa1445900:CDS 35.0%
! TCGATATTTTTCGTCCATTG+CGG - tig0031232:39043-39062 Msa1445900:CDS 35.0%
TACATGTTGTAGAAACCTAG+AGG - tig0031232:39194-39213 Msa1445900:CDS 35.0%
AGAGGATAATAATCACCTCT+AGG + tig0031232:39212-39231 Msa1445900:intergenic 35.0%
!!! TTCTAGTTTTTTTCGAACCC+CGG - tig0031232:39305-39324 Msa1445900:intron 35.0%
GACAATGCATAGTATATGCA+AGG + tig0031232:39332-39351 Msa1445900:intergenic 35.0%
TTATGCATGCATGGAAATCA+TGG + tig0031232:39519-39538 Msa1445900:intergenic 35.0%
GATTTCCATGCATGCATAAA+TGG - tig0031232:39520-39539 Msa1445900:CDS 35.0%
TAGTACCATTTATGCATGCA+TGG + tig0031232:39528-39547 Msa1445900:intergenic 35.0%
AATTGTATGGATGACCCTTA+GGG + tig0031232:39556-39575 Msa1445900:intergenic 35.0%
AAATTGTATGGATGACCCTT+AGG + tig0031232:39557-39576 Msa1445900:intergenic 35.0%
! TGTGATTTGGATTTGCAATG+TGG - tig0031232:39889-39908 Msa1445900:intron 35.0%
ATGATACCCCAAATTTCACT+GGG - tig0031232:40130-40149 Msa1445900:intron 35.0%
! TTTTCTCCCCAGTGAAATTT+GGG + tig0031232:40140-40159 Msa1445900:intergenic 35.0%
! TTCAATCAGAGGATTTTCTG+TGG - tig0031232:40179-40198 Msa1445900:intron 35.0%
!! GCAGTTGATAAAGTATGCAA+AGG - tig0031232:40219-40238 Msa1445900:intron 35.0%
! CAAAAGGTGTACACTTACTA+TGG + tig0031232:40298-40317 Msa1445900:intergenic 35.0%
!! TTTTGTGTTTGAGATGTGTC+GGG + tig0031232:40363-40382 Msa1445900:intergenic 35.0%
CTTAAAGATGCTGCAAAAGT+AGG + tig0031232:40710-40729 Msa1445900:intergenic 35.0%
!! CTACTTTTGCAGCATCTTTA+AGG - tig0031232:40708-40727 Msa1445900:intron 35.0%
CAACAATTGTTTAAGGGACT+AGG - tig0031232:40851-40870 Msa1445900:CDS 35.0%
AGGTAGTGAAAGTGACAAAT+TGG - tig0031232:40871-40890 Msa1445900:CDS 35.0%
TAGTGAAAGTGACAAATTGG+TGG - tig0031232:40874-40893 Msa1445900:CDS 35.0%
AGACTTCTTTGATCAAGATG+GGG - tig0031232:40939-40958 Msa1445900:CDS 35.0%
AAGTGACCATAACAAGGACA+AGG + tig0031232:38740-38759 Msa1445900:intergenic 40.0%
GTCCATTGCGGTTTACTTTA+TGG - tig0031232:39055-39074 Msa1445900:CDS 40.0%
GTCCATAAAGTAAACCGCAA+TGG + tig0031232:39060-39079 Msa1445900:intergenic 40.0%
TGCATAGTATATGCAAGGTC+CGG + tig0031232:39327-39346 Msa1445900:intergenic 40.0%
AATGGTACTAGAGTTCCCTA+AGG - tig0031232:39538-39557 Msa1445900:CDS 40.0%
ATGGTACTAGAGTTCCCTAA+GGG - tig0031232:39539-39558 Msa1445900:CDS 40.0%
! CATATCAATGTGCTGGTGAA+TGG - tig0031232:39647-39666 Msa1445900:intron 40.0%
GAAGCTAACGGCCAATAATT+AGG + tig0031232:39759-39778 Msa1445900:intergenic 40.0%
GATGATACCCCAAATTTCAC+TGG - tig0031232:40129-40148 Msa1445900:intron 40.0%
TGATACCCCAAATTTCACTG+GGG - tig0031232:40131-40150 Msa1445900:intron 40.0%
TTTCTCCCCAGTGAAATTTG+GGG + tig0031232:40139-40158 Msa1445900:intergenic 40.0%
! GTTTTCTCCCCAGTGAAATT+TGG + tig0031232:40141-40160 Msa1445900:intergenic 40.0%
TATCAGCACAAGATACCACA+GGG + tig0031232:40245-40264 Msa1445900:intergenic 40.0%
ATATCAGCACAAGATACCAC+AGG + tig0031232:40246-40265 Msa1445900:intergenic 40.0%
!!! TGTCACTTTTAACAGTTGGG+AGG - tig0031232:40449-40468 Msa1445900:intron 40.0%
GAGAAGTTGAATGTTGGAGA+TGG + tig0031232:40554-40573 Msa1445900:intergenic 40.0%
AGCTGTGAGAAGTTGAATGT+TGG + tig0031232:40560-40579 Msa1445900:intergenic 40.0%
AAAGACCTTGTAGCTCTTTC+TGG - tig0031232:40614-40633 Msa1445900:intron 40.0%
! TTTCTGGTGGTCACACTATA+GGG - tig0031232:40630-40649 Msa1445900:intron 40.0%
AGGAAGACTTGTCCTAGAAA+TGG - tig0031232:40728-40747 Msa1445900:intron 40.0%
AAGACTTGTCCTAGAAATGG+TGG - tig0031232:40731-40750 Msa1445900:intron 40.0%
TTGTTGTCTCCACCATTTCT+AGG + tig0031232:40743-40762 Msa1445900:intergenic 40.0%
CTTGTAGGAGTGAAATCAAG+TGG + tig0031232:40773-40792 Msa1445900:intergenic 40.0%
AGATTCGACTCAATTGCAGA+AGG - tig0031232:40993-41012 Msa1445900:CDS 40.0%
GATTCGACTCAATTGCAGAA+GGG - tig0031232:40994-41013 Msa1445900:CDS 40.0%
AAGTGACCATAACAAGGACA+AGG + tig0031232:38740-38759 Msa1445900:intergenic 40.0%
GTCCATTGCGGTTTACTTTA+TGG - tig0031232:39055-39074 Msa1445900:CDS 40.0%
GTCCATAAAGTAAACCGCAA+TGG + tig0031232:39060-39079 Msa1445900:intergenic 40.0%
TGCATAGTATATGCAAGGTC+CGG + tig0031232:39327-39346 Msa1445900:intergenic 40.0%
AATGGTACTAGAGTTCCCTA+AGG - tig0031232:39538-39557 Msa1445900:CDS 40.0%
ATGGTACTAGAGTTCCCTAA+GGG - tig0031232:39539-39558 Msa1445900:CDS 40.0%
! CATATCAATGTGCTGGTGAA+TGG - tig0031232:39647-39666 Msa1445900:intron 40.0%
GAAGCTAACGGCCAATAATT+AGG + tig0031232:39759-39778 Msa1445900:intergenic 40.0%
GATGATACCCCAAATTTCAC+TGG - tig0031232:40129-40148 Msa1445900:intron 40.0%
TGATACCCCAAATTTCACTG+GGG - tig0031232:40131-40150 Msa1445900:intron 40.0%
TTTCTCCCCAGTGAAATTTG+GGG + tig0031232:40139-40158 Msa1445900:intergenic 40.0%
! GTTTTCTCCCCAGTGAAATT+TGG + tig0031232:40141-40160 Msa1445900:intergenic 40.0%
TATCAGCACAAGATACCACA+GGG + tig0031232:40245-40264 Msa1445900:intergenic 40.0%
ATATCAGCACAAGATACCAC+AGG + tig0031232:40246-40265 Msa1445900:intergenic 40.0%
!!! TGTCACTTTTAACAGTTGGG+AGG - tig0031232:40449-40468 Msa1445900:intron 40.0%
GAGAAGTTGAATGTTGGAGA+TGG + tig0031232:40554-40573 Msa1445900:intergenic 40.0%
AGCTGTGAGAAGTTGAATGT+TGG + tig0031232:40560-40579 Msa1445900:intergenic 40.0%
AAAGACCTTGTAGCTCTTTC+TGG - tig0031232:40614-40633 Msa1445900:intron 40.0%
! TTTCTGGTGGTCACACTATA+GGG - tig0031232:40630-40649 Msa1445900:intron 40.0%
AGGAAGACTTGTCCTAGAAA+TGG - tig0031232:40728-40747 Msa1445900:intron 40.0%
AAGACTTGTCCTAGAAATGG+TGG - tig0031232:40731-40750 Msa1445900:intron 40.0%
TTGTTGTCTCCACCATTTCT+AGG + tig0031232:40743-40762 Msa1445900:intergenic 40.0%
CTTGTAGGAGTGAAATCAAG+TGG + tig0031232:40773-40792 Msa1445900:intergenic 40.0%
AGATTCGACTCAATTGCAGA+AGG - tig0031232:40993-41012 Msa1445900:CDS 40.0%
GATTCGACTCAATTGCAGAA+GGG - tig0031232:40994-41013 Msa1445900:CDS 40.0%
TATTGATCCCTACCAACGCA+TGG - tig0031232:38760-38779 Msa1445900:CDS 45.0%
CATAGTATATGCAAGGTCCG+GGG + tig0031232:39325-39344 Msa1445900:intergenic 45.0%
GCATAGTATATGCAAGGTCC+GGG + tig0031232:39326-39345 Msa1445900:intergenic 45.0%
! TGAGCTTAGCACAGTTGGTA+TGG + tig0031232:39354-39373 Msa1445900:intergenic 45.0%
AATCATGGCATCCCTTCTAG+TGG + tig0031232:39504-39523 Msa1445900:intergenic 45.0%
TAAAGTATGCAAAGGCCCTG+TGG - tig0031232:40227-40246 Msa1445900:intron 45.0%
! CTTTCTGGTGGTCACACTAT+AGG - tig0031232:40629-40648 Msa1445900:intron 45.0%
! GTCACACTATAGGGTTTGCT+AGG - tig0031232:40639-40658 Msa1445900:intron 45.0%
GGAACATCAAGCCTCTTACT+GGG - tig0031232:40960-40979 Msa1445900:CDS 45.0%
AAGCCTCTTACTGGGAAACA+AGG - tig0031232:40968-40987 Msa1445900:CDS 45.0%
TATTGATCCCTACCAACGCA+TGG - tig0031232:38760-38779 Msa1445900:CDS 45.0%
CATAGTATATGCAAGGTCCG+GGG + tig0031232:39325-39344 Msa1445900:intergenic 45.0%
GCATAGTATATGCAAGGTCC+GGG + tig0031232:39326-39345 Msa1445900:intergenic 45.0%
! TGAGCTTAGCACAGTTGGTA+TGG + tig0031232:39354-39373 Msa1445900:intergenic 45.0%
AATCATGGCATCCCTTCTAG+TGG + tig0031232:39504-39523 Msa1445900:intergenic 45.0%
TAAAGTATGCAAAGGCCCTG+TGG - tig0031232:40227-40246 Msa1445900:intron 45.0%
! CTTTCTGGTGGTCACACTAT+AGG - tig0031232:40629-40648 Msa1445900:intron 45.0%
! GTCACACTATAGGGTTTGCT+AGG - tig0031232:40639-40658 Msa1445900:intron 45.0%
GGAACATCAAGCCTCTTACT+GGG - tig0031232:40960-40979 Msa1445900:CDS 45.0%
AAGCCTCTTACTGGGAAACA+AGG - tig0031232:40968-40987 Msa1445900:CDS 45.0%
! GAGTAAGCCATGCGTTGGTA+GGG + tig0031232:38770-38789 Msa1445900:intergenic 50.0%
ATGAGGAGTAAGCCATGCGT+TGG + tig0031232:38775-38794 Msa1445900:intergenic 50.0%
TACAGAATCACGAGCTGCTG+TGG + tig0031232:40274-40293 Msa1445900:intergenic 50.0%
GACCTTGTAGCTCTTTCTGG+TGG - tig0031232:40617-40636 Msa1445900:intron 50.0%
GACCACCAGAAAGAGCTACA+AGG + tig0031232:40622-40641 Msa1445900:intergenic 50.0%
GGGAACATCAAGCCTCTTAC+TGG - tig0031232:40959-40978 Msa1445900:CDS 50.0%
!! TCGCCTTGTTTCCCAGTAAG+AGG + tig0031232:40974-40993 Msa1445900:intergenic 50.0%
! GAGTAAGCCATGCGTTGGTA+GGG + tig0031232:38770-38789 Msa1445900:intergenic 50.0%
ATGAGGAGTAAGCCATGCGT+TGG + tig0031232:38775-38794 Msa1445900:intergenic 50.0%
TACAGAATCACGAGCTGCTG+TGG + tig0031232:40274-40293 Msa1445900:intergenic 50.0%
GACCTTGTAGCTCTTTCTGG+TGG - tig0031232:40617-40636 Msa1445900:intron 50.0%
GACCACCAGAAAGAGCTACA+AGG + tig0031232:40622-40641 Msa1445900:intergenic 50.0%
GGGAACATCAAGCCTCTTAC+TGG - tig0031232:40959-40978 Msa1445900:CDS 50.0%
!! TCGCCTTGTTTCCCAGTAAG+AGG + tig0031232:40974-40993 Msa1445900:intergenic 50.0%
! GGAGTAAGCCATGCGTTGGT+AGG + tig0031232:38771-38790 Msa1445900:intergenic 55.0%
CCTCGTGAGCTTAGCACAGT+TGG + tig0031232:39359-39378 Msa1445900:intergenic 55.0%
CCAACTGTGCTAAGCTCACG+AGG - tig0031232:39356-39375 Msa1445900:intron 55.0%
! GGAGTAAGCCATGCGTTGGT+AGG + tig0031232:38771-38790 Msa1445900:intergenic 55.0%
CCTCGTGAGCTTAGCACAGT+TGG + tig0031232:39359-39378 Msa1445900:intergenic 55.0%
CCAACTGTGCTAAGCTCACG+AGG - tig0031232:39356-39375 Msa1445900:intron 55.0%
Chromosome Type Strat End Strand Name
tig0031232 gene 38708 41024 38708 ID=Msa1445900;Name=Msa1445900
tig0031232 mRNA 38708 41024 38708 ID=Msa1445900-mRNA-1;Parent=Msa1445900;Name=Msa1445900-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|1|0|1|1|1|3|0|322
tig0031232 exon 40812 41024 40812 ID=Msa1445900-mRNA-1:exon:15185;Parent=Msa1445900-mRNA-1
tig0031232 exon 39433 39627 39433 ID=Msa1445900-mRNA-1:exon:15184;Parent=Msa1445900-mRNA-1
tig0031232 exon 38708 39268 38708 ID=Msa1445900-mRNA-1:exon:15183;Parent=Msa1445900-mRNA-1
tig0031232 CDS 40812 41024 40812 ID=Msa1445900-mRNA-1:cds;Parent=Msa1445900-mRNA-1
tig0031232 CDS 39433 39627 39433 ID=Msa1445900-mRNA-1:cds;Parent=Msa1445900-mRNA-1
tig0031232 CDS 38708 39268 38708 ID=Msa1445900-mRNA-1:cds;Parent=Msa1445900-mRNA-1
Gene Sequence

>Msa1445900

ATGATGGCTTCTAGTTCTAGTCAAATATTCCTTGTCCTTGTTATGGTCACTTTATTGATCCCTACCAACGCATGGCTTACTCCTCATTTTTATGATAAAGTTTGCCCTCAAGCATTACCAACCATAAAGTCAGTTGTTCTCCATGCAATTCTTAGGGAAAAACGCATTGGAGCATCTCTTCTACGCTTGCATTTCCATGATTGCTTCGTCAATGGTTGTGATGGATCAGTTCTGCTAGATGATACCCCAAATTTCACTGGGGAGAAAACAGCTCGTCCAAATATCAATTCAATCAGAGGATTTTCTGTGGTTGATGAAATCAAAGCAGCAGTTGATAAAGTATGCAAAGGCCCTGTGGTATCTTGTGCTGATATTTTAGCCACAGCAGCTCGTGATTCTGTAGCCATATTGGGAGGTCCACAATTTTTCTACAATGTGTTATTGGGAAGAAGAGATGCAAGAACAGCAAGTAGAGCAGCTGCAAATGCAAATCTTCCATCTCCAACATTCAACTTCTCACAGCTTATTTCAAATTTCAAATCACAAGGATTAAATGTAAAAGACCTTGTAGCTCTTTCTGGTGGTCACACTATAGGGTTTGCTAGGTGCACTACATTTAGAAACAGAATTCACAATGAAACAAACATTGACCCTACTTTTGCAGCATCTTTAAGGAAGACTTGTCCTAGAAATGGTGGAGACAACAATTTAACACCACTTGATTTCACTCCTACAAGAGTTGAAAATACATATTATAGAGATTTGCTATACAAAAGGGGTGTCCTTCATTCTGATCAACAATTGTTTAAGGGACTAGGTAGTGAAAGTGACAAATTGGTGGAGCTATATAGTAAGAACCCTTTAGCTTTTGCTAGAGATTTTAAGACTTCTTTGATCAAGATGGGGAACATCAAGCCTCTTACTGGGAAACAAGGCGAGATTCGACTCAATTGCAGAAGGGTCAGATAG

Protein sequence

>Msa1445900

MMASSSSQIFLVLVMVTLLIPTNAWLTPHFYDKVCPQALPTIKSVVLHAILREKRIGASLLRLHFHDCFVNGCDGSVLLDDTPNFTGEKTARPNINSIRGFSVVDEIKAAVDKVCKGPVVSCADILATAARDSVAILGGPQFFYNVLLGRRDARTASRAAANANLPSPTFNFSQLISNFKSQGLNVKDLVALSGGHTIGFARCTTFRNRIHNETNIDPTFAASLRKTCPRNGGDNNLTPLDFTPTRVENTYYRDLLYKRGVLHSDQQLFKGLGSESDKLVELYSKNPLAFARDFKTSLIKMGNIKPLTGKQGEIRLNCRRVR*