AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0291750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0291750 MtrunA17_Chr2g0311721 96.923 325 10 0 1 325 1 325 0.0 652
Msa0291750 MtrunA17_Chr4g0061581 29.721 323 200 11 10 320 14 321 4.31e-28 114
Msa0291750 MtrunA17_Chr4g0061581 29.200 250 161 10 4 240 61 307 5.48e-18 84.7
Msa0291750 MtrunA17_Chr1g0192821 26.300 327 205 10 8 323 15 316 2.82e-21 94.7
Msa0291750 MtrunA17_Chr4g0074871 28.049 246 163 5 31 272 292 527 6.24e-19 87.8
Msa0291750 MtrunA17_Chr4g0074871 29.560 159 99 3 8 161 374 524 4.47e-11 63.9
Msa0291750 MtrunA17_Chr4g0066851 26.446 242 149 9 24 247 158 388 9.55e-17 81.3
Msa0291750 MtrunA17_Chr4g0066851 25.610 246 168 7 7 240 83 325 2.61e-16 79.7
Msa0291750 MtrunA17_Chr4g0066851 26.860 242 152 9 59 288 83 311 3.71e-15 76.3
Msa0291750 MtrunA17_Chr4g0066851 28.889 180 124 4 8 185 193 370 7.37e-15 75.5
Msa0291750 MtrunA17_Chr1g0207821 29.545 264 157 11 36 273 87 347 3.76e-16 79.3
Msa0291750 MtrunA17_Chr7g0272641 30.994 171 111 5 24 191 245 411 1.59e-15 77.4
Msa0291750 MtrunA17_Chr7g0272641 24.727 275 188 6 4 270 170 433 2.96e-14 73.6
Msa0291750 MtrunA17_Chr7g0272641 23.358 274 169 13 52 310 170 417 1.17e-11 65.5
Msa0291750 MtrunA17_Chr1g0197401 29.143 175 117 5 20 191 88 258 1.64e-15 77.0
Msa0291750 MtrunA17_Chr2g0286241 26.423 246 166 7 7 240 75 317 2.17e-15 77.0
Msa0291750 MtrunA17_Chr2g0286241 27.136 199 124 6 24 211 150 338 5.63e-15 75.9
Msa0291750 MtrunA17_Chr1g0198221 27.481 262 159 10 61 307 8 253 2.37e-15 76.6
Msa0291750 MtrunA17_Chr2g0297971 24.623 199 140 6 51 240 274 471 1.62e-11 65.1
Msa0291750 MtrunA17_Chr2g0297971 28.125 352 199 19 6 325 281 610 4.97e-11 63.5
Msa0291750 MtrunA17_Chr4g0002171 26.877 253 148 12 20 241 120 366 7.05e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0291750 AT3G07720.1 69.716 317 96 0 4 320 6 322 5.81e-171 478
Msa0291750 AT5G48180.1 53.395 324 149 2 1 324 1 322 2.82e-124 359
Msa0291750 AT3G16400.2 50.313 320 157 2 4 322 149 467 3.70e-113 336
Msa0291750 AT3G16400.1 50.313 320 157 2 4 322 149 467 3.70e-113 336
Msa0291750 AT3G16410.1 49.688 320 159 2 4 322 298 616 1.26e-111 337
Msa0291750 AT2G33070.1 50.313 320 157 2 4 322 150 468 1.07e-110 330
Msa0291750 AT2G33070.2 50.313 320 157 2 4 322 150 468 1.07e-110 330
Msa0291750 AT2G33070.3 50.000 322 157 3 4 322 150 470 1.35e-108 325
Msa0291750 AT3G16390.2 49.688 320 156 4 4 322 149 464 5.03e-107 320
Msa0291750 AT3G16390.1 49.688 320 156 4 4 322 149 464 5.03e-107 320
Msa0291750 AT1G54040.2 45.858 338 160 7 4 322 5 338 5.67e-99 295
Msa0291750 AT1G54040.3 46.012 326 154 6 15 322 11 332 2.69e-95 286
Msa0291750 AT1G54040.1 45.802 262 121 5 78 322 1 258 2.38e-75 232
Msa0291750 AT1G18610.1 28.846 312 199 7 19 320 23 321 8.16e-31 122
Msa0291750 AT1G18610.1 28.302 265 164 7 66 320 18 266 2.02e-17 83.2
Msa0291750 AT1G18610.2 28.846 312 199 7 19 320 23 321 8.16e-31 122
Msa0291750 AT1G18610.2 28.302 265 164 7 66 320 18 266 2.02e-17 83.2
Msa0291750 AT1G74150.2 27.564 312 203 7 19 320 20 318 8.02e-26 108
Msa0291750 AT1G74150.2 26.996 263 166 7 70 322 19 265 1.11e-15 78.2
Msa0291750 AT1G74150.2 31.677 161 103 4 7 161 111 270 2.07e-13 71.2
Msa0291750 AT1G74150.3 27.564 312 203 7 19 320 20 318 8.07e-26 108
Msa0291750 AT1G74150.3 26.996 263 166 7 70 322 19 265 1.08e-15 78.2
Msa0291750 AT1G74150.3 31.677 161 103 4 7 161 111 270 2.21e-13 71.2
Msa0291750 AT1G74150.1 27.564 312 203 7 19 320 20 318 8.72e-26 108
Msa0291750 AT1G74150.1 26.996 263 166 7 70 322 19 265 1.07e-15 78.2
Msa0291750 AT1G74150.1 31.677 161 103 4 7 161 111 270 2.14e-13 71.2
Msa0291750 AT1G74150.4 26.740 273 180 5 56 320 42 302 7.03e-21 93.6
Msa0291750 AT1G74150.4 25.000 232 163 6 8 230 46 275 3.65e-15 76.6
Msa0291750 AT1G74150.4 31.677 161 103 4 7 161 95 254 1.86e-13 71.2
Msa0291750 AT5G18590.2 27.542 236 154 7 24 247 140 370 9.08e-18 84.7
Msa0291750 AT5G18590.2 25.306 245 170 4 7 240 65 307 1.86e-16 80.5
Msa0291750 AT5G18590.2 25.087 287 177 10 16 288 32 294 1.16e-14 75.1
Msa0291750 AT5G18590.1 27.542 236 154 7 24 247 140 370 9.08e-18 84.7
Msa0291750 AT5G18590.1 25.306 245 170 4 7 240 65 307 1.86e-16 80.5
Msa0291750 AT5G18590.1 25.087 287 177 10 16 288 32 294 1.16e-14 75.1
Msa0291750 AT3G05420.2 26.786 280 181 7 4 270 168 436 3.67e-17 82.8
Msa0291750 AT3G05420.1 26.786 280 181 7 4 270 167 435 3.94e-17 82.8
Msa0291750 AT4G04670.1 33.333 141 91 2 21 161 376 513 1.07e-15 78.6
Msa0291750 AT4G04670.1 26.222 225 159 4 19 240 323 543 2.11e-15 77.8
Msa0291750 AT5G50310.1 25.735 272 167 8 30 279 94 352 2.24e-15 77.4
Msa0291750 AT5G04420.2 28.139 231 152 8 20 240 101 327 2.30e-14 73.9
Msa0291750 AT5G04420.1 28.139 231 152 8 20 240 101 327 2.30e-14 73.9
Msa0291750 AT5G04420.3 28.139 231 152 8 20 240 101 327 2.30e-14 73.9
Msa0291750 AT2G36360.2 26.820 261 162 8 61 307 8 253 2.43e-14 73.9
Msa0291750 AT2G36360.1 26.820 261 162 8 61 307 8 253 2.43e-14 73.9
Msa0291750 AT2G36360.3 26.820 261 162 8 61 307 8 253 2.55e-14 73.9
Msa0291750 AT2G36360.4 26.820 261 162 8 61 307 8 253 2.73e-14 73.9
Msa0291750 AT5G27630.4 31.690 142 93 3 52 191 275 414 3.64e-14 73.6
Msa0291750 AT5G27630.4 25.000 280 186 7 4 270 168 436 2.04e-13 71.2
Msa0291750 AT5G27630.2 31.690 142 93 3 52 191 275 414 3.82e-14 73.6
Msa0291750 AT5G27630.2 25.000 280 186 7 4 270 168 436 9.62e-14 72.4
Msa0291750 AT5G27630.1 31.690 142 93 3 52 191 275 414 3.83e-14 73.6
Msa0291750 AT5G27630.1 25.000 280 186 7 4 270 168 436 2.05e-13 71.2
Msa0291750 AT5G27630.3 31.690 142 93 3 52 191 275 414 4.29e-14 73.6
Msa0291750 AT5G27630.3 25.000 280 186 7 4 270 168 436 2.55e-13 71.2
Msa0291750 AT1G51550.1 28.287 251 145 12 21 241 123 368 9.61e-13 68.9
Msa0291750 AT5G57360.1 29.930 284 159 15 7 263 279 549 2.48e-12 68.2
Msa0291750 AT5G57360.2 29.930 284 159 15 7 263 279 549 2.75e-12 67.8
Msa0291750 AT1G68050.1 28.378 222 140 11 55 265 287 500 4.05e-12 67.4
Msa0291750 AT2G36360.5 25.926 270 162 9 61 307 8 262 5.97e-12 66.6
Msa0291750 AT2G18915.2 28.488 344 204 19 7 325 280 606 1.07e-11 66.2
Msa0291750 AT2G18915.1 28.488 344 204 19 7 325 270 596 1.19e-11 65.9

Find 120 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGAAGGCTCAATGATTTA+TGG 0.247369 2_3:-40396028 Msa0291750:CDS
TTGATTTCAAGTGGAGATAT+TGG 0.273286 2_3:-40396125 Msa0291750:CDS
GGAGAAACCATCTATGTATT+TGG 0.275442 2_3:-40396218 Msa0291750:CDS
GATGAATACTGAACCGAAAT+TGG 0.280667 2_3:+40397452 None:intergenic
GGTTCAGTATTCATCTTCTT+TGG 0.286267 2_3:-40397444 Msa0291750:five_prime_UTR
ATTGGCCTCGCTATCGTTTA+CGG 0.295111 2_3:+40397470 None:intergenic
TTGACACTAAAACCAACAAT+TGG 0.307459 2_3:-40396151 Msa0291750:CDS
AACGATAGCGAGGCCAATTT+CGG 0.308515 2_3:-40397465 Msa0291750:five_prime_UTR
CGTGGGTGGTGCGCATTTGC+CGG 0.322365 2_3:-40395609 Msa0291750:CDS
ATCAATGACGATTATATATT+AGG 0.329170 2_3:-40397504 Msa0291750:five_prime_UTR
CCATGAAGTATCGCCATTGC+TGG 0.348078 2_3:+40397403 None:intergenic
GCGTGGTGGTGGGGTGTTGC+CGG 0.348601 2_3:+40396265 None:intergenic
TGATTTCAAGTGGAGATATT+GGG 0.367335 2_3:-40396124 Msa0291750:CDS
GGGAAACACATAATTGTATA+TGG 0.375479 2_3:-40395768 Msa0291750:CDS
GCGCACCACCCACGTGGCCC+TGG 0.395028 2_3:+40395618 None:intergenic
TCTTCCACCAAATACATAGA+TGG 0.400451 2_3:+40396211 None:intergenic
CCAGCAATGGCGATACTTCA+TGG 0.407514 2_3:-40397403 Msa0291750:exon
TGAAATCAATGCCCAATTGT+TGG 0.413835 2_3:+40396139 None:intergenic
GAGATATTGGGCCTCCTAAC+CGG 0.415028 2_3:-40396112 Msa0291750:CDS
TGGGCCTTTGATGTTGTAGA+TGG 0.416755 2_3:-40396008 Msa0291750:CDS
AGGAAGGCTCAATGATTTAT+GGG 0.428980 2_3:-40396027 Msa0291750:CDS
TTCGGCGGCTGTGGAGTGGC+AGG 0.443832 2_3:-40396047 Msa0291750:CDS
GTGACACCGACGCGTGGTGG+TGG 0.445088 2_3:+40396254 None:intergenic
CTGACCATGTCAATGTATCT+AGG 0.447488 2_3:+40396300 None:intergenic
CCCATGTGACCTTGGTCACT+AGG 0.452252 2_3:+40395732 None:intergenic
TTGCAAGGGAAGAGGTGGGC+CGG 0.453359 2_3:-40395952 Msa0291750:CDS
TGACACTAAAACCAACAATT+GGG 0.453671 2_3:-40396150 Msa0291750:CDS
TAAGCCCGCTTGTTTCCACT+TGG 0.463090 2_3:+40395829 None:intergenic
CCTTGGGCAACTGTTAGGCC+CGG 0.464927 2_3:+40395933 None:intergenic
TTGGACGATAAGGTGGAATC+AGG 0.467150 2_3:-40395648 Msa0291750:CDS
TGCAAGGGAAGAGGTGGGCC+GGG 0.474673 2_3:-40395951 Msa0291750:CDS
ATGGACGAGGTTGGACGATA+AGG 0.477851 2_3:-40395658 Msa0291750:CDS
CAAGAGGGATTATTAGTGTA+TGG 0.478956 2_3:-40395570 Msa0291750:CDS
CTTCCCTTGCAACTTTCACC+AGG 0.479391 2_3:+40395963 None:intergenic
GGCGATACTTCATGGCAGTT+GGG 0.480675 2_3:-40397395 Msa0291750:CDS
GTGGAATCAGGTGACCATCC+AGG 0.484389 2_3:-40395636 Msa0291750:CDS
TGGCGATACTTCATGGCAGT+TGG 0.484948 2_3:-40397396 Msa0291750:CDS
ACCACCCACGTGGCCCTGGA+TGG 0.485325 2_3:+40395622 None:intergenic
AACACATAATTGTATATGGT+GGG 0.491224 2_3:-40395764 Msa0291750:CDS
TGGTCAGTAGCCAATGTATC+CGG 0.491412 2_3:-40396284 Msa0291750:CDS
CCCTAGTGACCAAGGTCACA+TGG 0.498673 2_3:-40395733 Msa0291750:CDS
TGGGTGGAATTTCCATCTCC+TGG 0.503407 2_3:-40395981 Msa0291750:CDS
GGACAGAAGGTCTATGCATT+CGG 0.507522 2_3:-40396374 Msa0291750:CDS
ATGGAGTGGTAGCTCCGGTT+AGG 0.508095 2_3:+40396098 None:intergenic
TTGCAACTTTCACCAGGAGA+TGG 0.508173 2_3:+40395969 None:intergenic
TGACACCGACGCGTGGTGGT+GGG 0.508375 2_3:+40396255 None:intergenic
GTGTCGCTCATCGGCAGTCA+TGG 0.509728 2_3:+40396079 None:intergenic
GACCAAGGTCACATGGGTGC+TGG 0.513231 2_3:-40395726 Msa0291750:CDS
AACATACACGTGTCGCTCAT+CGG 0.521986 2_3:+40396070 None:intergenic
ACCATCCAGGGCCACGTGGG+TGG 0.523986 2_3:-40395623 Msa0291750:CDS
CCATGTGACCTTGGTCACTA+GGG 0.525844 2_3:+40395733 None:intergenic
TTCTTTGGTACGTCAGAGTG+TGG 0.526630 2_3:-40397429 Msa0291750:five_prime_UTR
ACATGTAACTTGTTGTCGAC+AGG 0.531894 2_3:+40396329 None:intergenic
TGGGGTGTTGCCGGATACAT+TGG 0.535359 2_3:+40396274 None:intergenic
GACACTATCATGGACGAGGT+TGG 0.537344 2_3:-40395667 Msa0291750:CDS
TTGGCTGCCTCGGCTAGCAC+CGG 0.541808 2_3:+40395590 None:intergenic
ATAATCCCTCTTGGCTGCCT+CGG 0.546368 2_3:+40395580 None:intergenic
TGACGTGCATTTCTTCGACC+TGG 0.546867 2_3:-40395868 Msa0291750:CDS
GACCAGCACCCATGTGACCT+TGG 0.549010 2_3:+40395724 None:intergenic
GGTGAAAGTTGCAAGGGAAG+AGG 0.549168 2_3:-40395960 Msa0291750:CDS
GACACCGACGCGTGGTGGTG+GGG 0.549336 2_3:+40396256 None:intergenic
TCATCAAGCCTGTCGTTGCT+AGG 0.553094 2_3:+40395537 None:intergenic
GAAAGTTGCAAGGGAAGAGG+TGG 0.555227 2_3:-40395957 Msa0291750:CDS
TTGTTTCAGCTTGATCAAAG+AGG 0.556708 2_3:-40396440 Msa0291750:intron
GAAACCATCTATGTATTTGG+TGG 0.556915 2_3:-40396215 Msa0291750:CDS
GGGCCCAAGTGGAAACAAGC+GGG 0.558194 2_3:-40395833 Msa0291750:CDS
AACAAGTTGAAAACACACTA+CGG 0.558479 2_3:+40395796 None:intergenic
AATTGGGCATTGATTTCAAG+TGG 0.559126 2_3:-40396134 Msa0291750:CDS
GCTAGCCGAGGCAGCCAAGA+GGG 0.561545 2_3:-40395585 Msa0291750:CDS
TGGAATCAGGTGACCATCCA+GGG 0.565322 2_3:-40395635 Msa0291750:CDS
AAGCCCGCTTGTTTCCACTT+GGG 0.567060 2_3:+40395830 None:intergenic
ATCTCCTGGTGAAAGTTGCA+AGG 0.567843 2_3:-40395967 Msa0291750:CDS
CAGAGTGTGGATTCCAGCAA+TGG 0.569863 2_3:-40397416 Msa0291750:exon
GAGTGGTAGCTCCGGTTAGG+AGG 0.569929 2_3:+40396101 None:intergenic
CAGTCATGGAGTGGTAGCTC+CGG 0.571117 2_3:+40396093 None:intergenic
CATACACTAATAATCCCTCT+TGG 0.571128 2_3:+40395571 None:intergenic
GGTGTCACAATGGCTGCAGT+TGG 0.571354 2_3:-40396239 Msa0291750:CDS
TATCGTTTACGGTAATGCGT+TGG 0.576409 2_3:+40397481 None:intergenic
TTGATGTTGTAGATGGCAAG+TGG 0.580423 2_3:-40396001 Msa0291750:CDS
ACTTCATGGCAGTTGGGTCA+AGG 0.582658 2_3:-40397389 Msa0291750:intron
ACAAGTTGAAAACACACTAC+GGG 0.586581 2_3:+40395797 None:intergenic
GCGGCTGTGGAGTGGCAGGA+AGG 0.587976 2_3:-40396043 Msa0291750:CDS
GCAACTCACCTAGCAACGAC+AGG 0.588373 2_3:-40395545 Msa0291750:CDS
GAAAACACACTACGGGCCGT+TGG 0.595615 2_3:+40395804 None:intergenic
TATTGCCGTCGTAGGACAGA+AGG 0.597497 2_3:-40396387 Msa0291750:CDS
AAACACATAATTGTATATGG+TGG 0.598952 2_3:-40395765 Msa0291750:CDS
GACGAGGTTGGACGATAAGG+TGG 0.598960 2_3:-40395655 Msa0291750:CDS
ACACATAATTGTATATGGTG+GGG 0.601078 2_3:-40395763 Msa0291750:CDS
GATCAAAGAGGAATCTTGCA+AGG 0.605041 2_3:-40396428 Msa0291750:CDS
ACTAACTTTGAGCAAGAGCA+AGG 0.608068 2_3:+40395505 None:intergenic
AACAAGCGGGCTTAAACCAA+CGG 0.609017 2_3:-40395820 Msa0291750:CDS
TAGACACGGAGACACTATCA+TGG 0.609879 2_3:-40395677 Msa0291750:CDS
GCATTTGCCGGTGCTAGCCG+AGG 0.611791 2_3:-40395597 Msa0291750:CDS
GAAATAGACCCTAGTGACCA+AGG 0.612642 2_3:-40395741 Msa0291750:CDS
CGGAGACACTATCATGGACG+AGG 0.615534 2_3:-40395671 Msa0291750:CDS
ACCACGCGTCGGTGTCACAA+TGG 0.617054 2_3:-40396249 Msa0291750:CDS
TGGGCCCAAGTGGAAACAAG+CGG 0.619935 2_3:-40395834 Msa0291750:CDS
TCTCCTGGTGAAAGTTGCAA+GGG 0.623404 2_3:-40395966 Msa0291750:CDS
CTTGCCATCTACAACATCAA+AGG 0.626528 2_3:+40396004 None:intergenic
TCACATGCTATTGCCGTCGT+AGG 0.631927 2_3:-40396395 Msa0291750:CDS
GCTCATCGGCAGTCATGGAG+TGG 0.634077 2_3:+40396084 None:intergenic
GGTGACCATCCAGGGCCACG+TGG 0.637621 2_3:-40395627 Msa0291750:CDS
CCGGGCCTAACAGTTGCCCA+AGG 0.640109 2_3:-40395933 Msa0291750:CDS
TGTTGTAGATGGCAAGTGGG+TGG 0.641254 2_3:-40395997 Msa0291750:CDS
GTGACCATCCAGGGCCACGT+GGG 0.647327 2_3:-40395626 Msa0291750:CDS
CCTAGTGACCAAGGTCACAT+GGG 0.649054 2_3:-40395732 Msa0291750:CDS
ATTGTGACACCGACGCGTGG+TGG 0.649495 2_3:+40396251 None:intergenic
AACACCCCACCACCACGCGT+CGG 0.652182 2_3:-40396260 Msa0291750:CDS
TGATGTTGTAGATGGCAAGT+GGG 0.652890 2_3:-40396000 Msa0291750:CDS
GAGGGATTATTAGTGTATGG+TGG 0.654652 2_3:-40395567 Msa0291750:CDS
CAGAAGGTCTATGCATTCGG+TGG 0.655189 2_3:-40396371 Msa0291750:CDS
TGCTAGCCGAGGCAGCCAAG+AGG 0.662151 2_3:-40395586 Msa0291750:CDS
GCCATTGTGACACCGACGCG+TGG 0.669366 2_3:+40396248 None:intergenic
AAAGTTGCAAGGGAAGAGGT+GGG 0.669531 2_3:-40395956 Msa0291750:CDS
GCAAATGCGCACCACCCACG+TGG 0.684596 2_3:+40395612 None:intergenic
GGAGCTTTATGCATTAGACA+CGG 0.692770 2_3:-40395691 Msa0291750:CDS
CATTACCGTAAACGATAGCG+AGG 0.693565 2_3:-40397475 Msa0291750:five_prime_UTR
ATAGACCTTCTGTCCTACGA+CGG 0.710613 2_3:+40396382 None:intergenic
TTGTTGTCGACAGGAACACG+AGG 0.713518 2_3:+40396338 None:intergenic
ATGACCTAGATACATTGACA+TGG 0.724446 2_3:-40396304 Msa0291750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGGATTAACAATATATTT+TGG - chr2_3:40395848-40395867 Msa0291750:CDS 15.0%
!! TTAATTTACCTAAATATCTA+AGG + chr2_3:40396283-40396302 None:intergenic 15.0%
!!! TAAGATTTTTTGAAGTAATT+AGG - chr2_3:40396306-40396325 Msa0291750:CDS 15.0%
!!! TTTCATTTTAAGAACAATAT+GGG + chr2_3:40396540-40396559 None:intergenic 15.0%
!!! ATTTCATTTTAAGAACAATA+TGG + chr2_3:40396541-40396560 None:intergenic 15.0%
!!! TTTGGATTAACAATATATTT+TGG - chr2_3:40395848-40395867 Msa0291750:CDS 15.0%
!! TTAATTTACCTAAATATCTA+AGG + chr2_3:40396283-40396302 None:intergenic 15.0%
!!! TAAGATTTTTTGAAGTAATT+AGG - chr2_3:40396306-40396325 Msa0291750:CDS 15.0%
!!! TTTCATTTTAAGAACAATAT+GGG + chr2_3:40396540-40396559 None:intergenic 15.0%
!!! ATTTCATTTTAAGAACAATA+TGG + chr2_3:40396541-40396560 None:intergenic 15.0%
!! ATCAATGACGATTATATATT+AGG - chr2_3:40395517-40395536 Msa0291750:CDS 20.0%
!! TGTTTGTGAAATGAAAAATT+AGG - chr2_3:40395787-40395806 Msa0291750:CDS 20.0%
!! GTTTGTGAAATGAAAAATTA+GGG - chr2_3:40395788-40395807 Msa0291750:CDS 20.0%
!! TTTGTGAAATGAAAAATTAG+GGG - chr2_3:40395789-40395808 Msa0291750:CDS 20.0%
!! ATATATTGTTAATCCAAACA+TGG + chr2_3:40395846-40395865 None:intergenic 20.0%
!! AAAAATAGCTTATACATAAG+CGG + chr2_3:40395888-40395907 None:intergenic 20.0%
!!! ATTTTTTGAAGTAATTAGGT+TGG - chr2_3:40396310-40396329 Msa0291750:CDS 20.0%
!! ATCAATGACGATTATATATT+AGG - chr2_3:40395517-40395536 Msa0291750:CDS 20.0%
!! TGTTTGTGAAATGAAAAATT+AGG - chr2_3:40395787-40395806 Msa0291750:CDS 20.0%
!! GTTTGTGAAATGAAAAATTA+GGG - chr2_3:40395788-40395807 Msa0291750:CDS 20.0%
!! TTTGTGAAATGAAAAATTAG+GGG - chr2_3:40395789-40395808 Msa0291750:CDS 20.0%
!! ATATATTGTTAATCCAAACA+TGG + chr2_3:40395846-40395865 None:intergenic 20.0%
!! AAAAATAGCTTATACATAAG+CGG + chr2_3:40395888-40395907 None:intergenic 20.0%
!!! ATTTTTTGAAGTAATTAGGT+TGG - chr2_3:40396310-40396329 Msa0291750:CDS 20.0%
!!! AAATTAGGGGTTTTAGTTTA+TGG - chr2_3:40395802-40395821 Msa0291750:CDS 25.0%
! TATGGATTCTTTCTAGATTT+AGG - chr2_3:40395820-40395839 Msa0291750:CDS 25.0%
!!! GTTGTTTTCATACGTTATTT+TGG - chr2_3:40395956-40395975 Msa0291750:CDS 25.0%
!! GTTTATGACATTTTCATAAG+TGG + chr2_3:40396008-40396027 None:intergenic 25.0%
! AAGAACTAGTAATACTGTTT+AGG + chr2_3:40396047-40396066 None:intergenic 25.0%
!!! GTTTGAACAATTTTTAAGCA+CGG - chr2_3:40396190-40396209 Msa0291750:CDS 25.0%
! GTATTTCTCCTTAGATATTT+AGG - chr2_3:40396272-40396291 Msa0291750:CDS 25.0%
! AATTGTTATAGTTCATGTAC+AGG - chr2_3:40396341-40396360 Msa0291750:CDS 25.0%
!!! TGTTTTCAACTTGTTTGATT+GGG - chr2_3:40397233-40397252 Msa0291750:intron 25.0%
! AAACACATAATTGTATATGG+TGG - chr2_3:40397256-40397275 Msa0291750:intron 25.0%
! AACACATAATTGTATATGGT+GGG - chr2_3:40397257-40397276 Msa0291750:intron 25.0%
!!! AAATTAGGGGTTTTAGTTTA+TGG - chr2_3:40395802-40395821 Msa0291750:CDS 25.0%
! TATGGATTCTTTCTAGATTT+AGG - chr2_3:40395820-40395839 Msa0291750:CDS 25.0%
!!! GTTGTTTTCATACGTTATTT+TGG - chr2_3:40395956-40395975 Msa0291750:CDS 25.0%
!! GTTTATGACATTTTCATAAG+TGG + chr2_3:40396008-40396027 None:intergenic 25.0%
! AAGAACTAGTAATACTGTTT+AGG + chr2_3:40396047-40396066 None:intergenic 25.0%
!!! GTTTGAACAATTTTTAAGCA+CGG - chr2_3:40396190-40396209 Msa0291750:CDS 25.0%
! GTATTTCTCCTTAGATATTT+AGG - chr2_3:40396272-40396291 Msa0291750:CDS 25.0%
! AATTGTTATAGTTCATGTAC+AGG - chr2_3:40396341-40396360 Msa0291750:CDS 25.0%
!!! TGTTTTCAACTTGTTTGATT+GGG - chr2_3:40397233-40397252 Msa0291750:intron 25.0%
! AAACACATAATTGTATATGG+TGG - chr2_3:40397256-40397275 Msa0291750:intron 25.0%
! AACACATAATTGTATATGGT+GGG - chr2_3:40397257-40397276 Msa0291750:intron 25.0%
!! TTTTGCTCTGTTTAGCTTAT+TGG - chr2_3:40395728-40395747 Msa0291750:CDS 30.0%
ACATCTACAGGAACAATTAA+CGG + chr2_3:40396109-40396128 None:intergenic 30.0%
TAATTGTTCCTGTAGATGTA+AGG - chr2_3:40396110-40396129 Msa0291750:CDS 30.0%
CAAAAGCTATTCAAGAATAC+TGG + chr2_3:40396436-40396455 None:intergenic 30.0%
TTGACACTAAAACCAACAAT+TGG - chr2_3:40396870-40396889 Msa0291750:intron 30.0%
TGACACTAAAACCAACAATT+GGG - chr2_3:40396871-40396890 Msa0291750:intron 30.0%
! TTGATTTCAAGTGGAGATAT+TGG - chr2_3:40396896-40396915 Msa0291750:intron 30.0%
! TGATTTCAAGTGGAGATATT+GGG - chr2_3:40396897-40396916 Msa0291750:intron 30.0%
! AACAAGTTGAAAACACACTA+CGG + chr2_3:40397228-40397247 None:intergenic 30.0%
!! GTGTTTTCAACTTGTTTGAT+TGG - chr2_3:40397232-40397251 Msa0291750:intron 30.0%
GGGAAACACATAATTGTATA+TGG - chr2_3:40397253-40397272 Msa0291750:intron 30.0%
ACACATAATTGTATATGGTG+GGG - chr2_3:40397258-40397277 Msa0291750:intron 30.0%
!! TTTTGCTCTGTTTAGCTTAT+TGG - chr2_3:40395728-40395747 Msa0291750:CDS 30.0%
ACATCTACAGGAACAATTAA+CGG + chr2_3:40396109-40396128 None:intergenic 30.0%
TAATTGTTCCTGTAGATGTA+AGG - chr2_3:40396110-40396129 Msa0291750:CDS 30.0%
CAAAAGCTATTCAAGAATAC+TGG + chr2_3:40396436-40396455 None:intergenic 30.0%
TTGACACTAAAACCAACAAT+TGG - chr2_3:40396870-40396889 Msa0291750:intron 30.0%
TGACACTAAAACCAACAATT+GGG - chr2_3:40396871-40396890 Msa0291750:intron 30.0%
! TTGATTTCAAGTGGAGATAT+TGG - chr2_3:40396896-40396915 Msa0291750:intron 30.0%
! TGATTTCAAGTGGAGATATT+GGG - chr2_3:40396897-40396916 Msa0291750:intron 30.0%
! AACAAGTTGAAAACACACTA+CGG + chr2_3:40397228-40397247 None:intergenic 30.0%
!! GTGTTTTCAACTTGTTTGAT+TGG - chr2_3:40397232-40397251 Msa0291750:intron 30.0%
GGGAAACACATAATTGTATA+TGG - chr2_3:40397253-40397272 Msa0291750:intron 30.0%
ACACATAATTGTATATGGTG+GGG - chr2_3:40397258-40397277 Msa0291750:intron 30.0%
GATGAATACTGAACCGAAAT+TGG + chr2_3:40395572-40395591 None:intergenic 35.0%
GGTTCAGTATTCATCTTCTT+TGG - chr2_3:40395577-40395596 Msa0291750:CDS 35.0%
TTCTAGATTTAGGCCATGTT+TGG - chr2_3:40395830-40395849 Msa0291750:CDS 35.0%
!!! ACGTTATTTTGGAGAGCTTA+TGG - chr2_3:40395967-40395986 Msa0291750:CDS 35.0%
AATTAACGGTCTGTTTGGAT+TGG + chr2_3:40396095-40396114 None:intergenic 35.0%
! GTGACCTTTTGCTTAAGTTT+AGG - chr2_3:40396145-40396164 Msa0291750:CDS 35.0%
CCAACCTAAACTTAAGCAAA+AGG + chr2_3:40396152-40396171 None:intergenic 35.0%
! CCTTTTGCTTAAGTTTAGGT+TGG - chr2_3:40396149-40396168 Msa0291750:CDS 35.0%
CATGTACAGGCTAATAGTTA+AGG - chr2_3:40396354-40396373 Msa0291750:CDS 35.0%
TCTACCAGTATTCTACTAGA+TGG - chr2_3:40396489-40396508 Msa0291750:intron 35.0%
AATGCCATCTAGTAGAATAC+TGG + chr2_3:40396496-40396515 None:intergenic 35.0%
TTGTTTCAGCTTGATCAAAG+AGG - chr2_3:40396581-40396600 Msa0291750:intron 35.0%
ATGACCTAGATACATTGACA+TGG - chr2_3:40396717-40396736 Msa0291750:intron 35.0%
GGAGAAACCATCTATGTATT+TGG - chr2_3:40396803-40396822 Msa0291750:intron 35.0%
GAAACCATCTATGTATTTGG+TGG - chr2_3:40396806-40396825 Msa0291750:intron 35.0%
TCTTCCACCAAATACATAGA+TGG + chr2_3:40396813-40396832 None:intergenic 35.0%
TGAAATCAATGCCCAATTGT+TGG + chr2_3:40396885-40396904 None:intergenic 35.0%
!! AATTGGGCATTGATTTCAAG+TGG - chr2_3:40396887-40396906 Msa0291750:intron 35.0%
AGGAAGGCTCAATGATTTAT+GGG - chr2_3:40396994-40397013 Msa0291750:intron 35.0%
AGTTGCCCAAGGAAAAATAT+GGG - chr2_3:40397099-40397118 Msa0291750:intron 35.0%
! CACAACCCATATTTTTCCTT+GGG + chr2_3:40397107-40397126 None:intergenic 35.0%
! ACACAACCCATATTTTTCCT+TGG + chr2_3:40397108-40397127 None:intergenic 35.0%
! GGAAAAATATGGGTTGTGTA+TGG - chr2_3:40397109-40397128 Msa0291750:intron 35.0%
! ACAAGTTGAAAACACACTAC+GGG + chr2_3:40397227-40397246 None:intergenic 35.0%
CATACACTAATAATCCCTCT+TGG + chr2_3:40397453-40397472 None:intergenic 35.0%
CAAGAGGGATTATTAGTGTA+TGG - chr2_3:40397451-40397470 Msa0291750:five_prime_UTR 35.0%
GATGAATACTGAACCGAAAT+TGG + chr2_3:40395572-40395591 None:intergenic 35.0%
GGTTCAGTATTCATCTTCTT+TGG - chr2_3:40395577-40395596 Msa0291750:CDS 35.0%
TTCTAGATTTAGGCCATGTT+TGG - chr2_3:40395830-40395849 Msa0291750:CDS 35.0%
!!! ACGTTATTTTGGAGAGCTTA+TGG - chr2_3:40395967-40395986 Msa0291750:CDS 35.0%
AATTAACGGTCTGTTTGGAT+TGG + chr2_3:40396095-40396114 None:intergenic 35.0%
! GTGACCTTTTGCTTAAGTTT+AGG - chr2_3:40396145-40396164 Msa0291750:CDS 35.0%
CCAACCTAAACTTAAGCAAA+AGG + chr2_3:40396152-40396171 None:intergenic 35.0%
! CCTTTTGCTTAAGTTTAGGT+TGG - chr2_3:40396149-40396168 Msa0291750:CDS 35.0%
CATGTACAGGCTAATAGTTA+AGG - chr2_3:40396354-40396373 Msa0291750:CDS 35.0%
TCTACCAGTATTCTACTAGA+TGG - chr2_3:40396489-40396508 Msa0291750:intron 35.0%
AATGCCATCTAGTAGAATAC+TGG + chr2_3:40396496-40396515 None:intergenic 35.0%
TTGTTTCAGCTTGATCAAAG+AGG - chr2_3:40396581-40396600 Msa0291750:intron 35.0%
ATGACCTAGATACATTGACA+TGG - chr2_3:40396717-40396736 Msa0291750:intron 35.0%
GGAGAAACCATCTATGTATT+TGG - chr2_3:40396803-40396822 Msa0291750:intron 35.0%
GAAACCATCTATGTATTTGG+TGG - chr2_3:40396806-40396825 Msa0291750:intron 35.0%
TCTTCCACCAAATACATAGA+TGG + chr2_3:40396813-40396832 None:intergenic 35.0%
TGAAATCAATGCCCAATTGT+TGG + chr2_3:40396885-40396904 None:intergenic 35.0%
!! AATTGGGCATTGATTTCAAG+TGG - chr2_3:40396887-40396906 Msa0291750:intron 35.0%
AGGAAGGCTCAATGATTTAT+GGG - chr2_3:40396994-40397013 Msa0291750:intron 35.0%
AGTTGCCCAAGGAAAAATAT+GGG - chr2_3:40397099-40397118 Msa0291750:intron 35.0%
! CACAACCCATATTTTTCCTT+GGG + chr2_3:40397107-40397126 None:intergenic 35.0%
! ACACAACCCATATTTTTCCT+TGG + chr2_3:40397108-40397127 None:intergenic 35.0%
! GGAAAAATATGGGTTGTGTA+TGG - chr2_3:40397109-40397128 Msa0291750:intron 35.0%
! ACAAGTTGAAAACACACTAC+GGG + chr2_3:40397227-40397246 None:intergenic 35.0%
CATACACTAATAATCCCTCT+TGG + chr2_3:40397453-40397472 None:intergenic 35.0%
CAAGAGGGATTATTAGTGTA+TGG - chr2_3:40397451-40397470 Msa0291750:five_prime_UTR 35.0%
TATCGTTTACGGTAATGCGT+TGG + chr2_3:40395543-40395562 None:intergenic 40.0%
GGAACAATTAACGGTCTGTT+TGG + chr2_3:40396100-40396119 None:intergenic 40.0%
TTCCTGTAGATGTAAGGATG+CGG - chr2_3:40396116-40396135 Msa0291750:CDS 40.0%
GATCAAAGAGGAATCTTGCA+AGG - chr2_3:40396593-40396612 Msa0291750:intron 40.0%
!! ACATGTAACTTGTTGTCGAC+AGG + chr2_3:40396695-40396714 None:intergenic 40.0%
CTGACCATGTCAATGTATCT+AGG + chr2_3:40396724-40396743 None:intergenic 40.0%
CAGGAAGGCTCAATGATTTA+TGG - chr2_3:40396993-40397012 Msa0291750:intron 40.0%
CTTGCCATCTACAACATCAA+AGG + chr2_3:40397020-40397039 None:intergenic 40.0%
TTGATGTTGTAGATGGCAAG+TGG - chr2_3:40397020-40397039 Msa0291750:intron 40.0%
TGATGTTGTAGATGGCAAGT+GGG - chr2_3:40397021-40397040 Msa0291750:intron 40.0%
! TTTTTCCTTGGGCAACTGTT+AGG + chr2_3:40397096-40397115 None:intergenic 40.0%
CAGTTGCCCAAGGAAAAATA+TGG - chr2_3:40397098-40397117 Msa0291750:intron 40.0%
!! TGTGTATGGTTTTGCTGGAA+TGG - chr2_3:40397123-40397142 Msa0291750:intron 40.0%
! GGAGCTTTATGCATTAGACA+CGG - chr2_3:40397330-40397349 Msa0291750:intron 40.0%
GAGGGATTATTAGTGTATGG+TGG - chr2_3:40397454-40397473 Msa0291750:five_prime_UTR 40.0%
TATCGTTTACGGTAATGCGT+TGG + chr2_3:40395543-40395562 None:intergenic 40.0%
GGAACAATTAACGGTCTGTT+TGG + chr2_3:40396100-40396119 None:intergenic 40.0%
TTCCTGTAGATGTAAGGATG+CGG - chr2_3:40396116-40396135 Msa0291750:CDS 40.0%
GATCAAAGAGGAATCTTGCA+AGG - chr2_3:40396593-40396612 Msa0291750:intron 40.0%
!! ACATGTAACTTGTTGTCGAC+AGG + chr2_3:40396695-40396714 None:intergenic 40.0%
CTGACCATGTCAATGTATCT+AGG + chr2_3:40396724-40396743 None:intergenic 40.0%
CAGGAAGGCTCAATGATTTA+TGG - chr2_3:40396993-40397012 Msa0291750:intron 40.0%
CTTGCCATCTACAACATCAA+AGG + chr2_3:40397020-40397039 None:intergenic 40.0%
TTGATGTTGTAGATGGCAAG+TGG - chr2_3:40397020-40397039 Msa0291750:intron 40.0%
TGATGTTGTAGATGGCAAGT+GGG - chr2_3:40397021-40397040 Msa0291750:intron 40.0%
! TTTTTCCTTGGGCAACTGTT+AGG + chr2_3:40397096-40397115 None:intergenic 40.0%
CAGTTGCCCAAGGAAAAATA+TGG - chr2_3:40397098-40397117 Msa0291750:intron 40.0%
!! TGTGTATGGTTTTGCTGGAA+TGG - chr2_3:40397123-40397142 Msa0291750:intron 40.0%
! GGAGCTTTATGCATTAGACA+CGG - chr2_3:40397330-40397349 Msa0291750:intron 40.0%
GAGGGATTATTAGTGTATGG+TGG - chr2_3:40397454-40397473 Msa0291750:five_prime_UTR 40.0%
CATTACCGTAAACGATAGCG+AGG - chr2_3:40395546-40395565 Msa0291750:CDS 45.0%
! ATTGGCCTCGCTATCGTTTA+CGG + chr2_3:40395554-40395573 None:intergenic 45.0%
AACGATAGCGAGGCCAATTT+CGG - chr2_3:40395556-40395575 Msa0291750:CDS 45.0%
TTCTTTGGTACGTCAGAGTG+TGG - chr2_3:40395592-40395611 Msa0291750:CDS 45.0%
ATAGACCTTCTGTCCTACGA+CGG + chr2_3:40396642-40396661 None:intergenic 45.0%
GGACAGAAGGTCTATGCATT+CGG - chr2_3:40396647-40396666 Msa0291750:intron 45.0%
TGGTCAGTAGCCAATGTATC+CGG - chr2_3:40396737-40396756 Msa0291750:intron 45.0%
! AACATACACGTGTCGCTCAT+CGG + chr2_3:40396954-40396973 None:intergenic 45.0%
! GAGCGACACGTGTATGTTTT+CGG - chr2_3:40396956-40396975 Msa0291750:intron 45.0%
TGGGCCTTTGATGTTGTAGA+TGG - chr2_3:40397013-40397032 Msa0291750:intron 45.0%
TTGCAACTTTCACCAGGAGA+TGG + chr2_3:40397055-40397074 None:intergenic 45.0%
ATCTCCTGGTGAAAGTTGCA+AGG - chr2_3:40397054-40397073 Msa0291750:intron 45.0%
TCTCCTGGTGAAAGTTGCAA+GGG - chr2_3:40397055-40397074 Msa0291750:intron 45.0%
AAAGTTGCAAGGGAAGAGGT+GGG - chr2_3:40397065-40397084 Msa0291750:intron 45.0%
!! TGGGTTGTGTATGGTTTTGC+TGG - chr2_3:40397118-40397137 Msa0291750:intron 45.0%
!! TGGTTTTGCTGGAATGGAAG+TGG - chr2_3:40397129-40397148 Msa0291750:intron 45.0%
!!! CACTTGGGCCCATGTTTTTT+GGG + chr2_3:40397179-40397198 None:intergenic 45.0%
! AACAAGCGGGCTTAAACCAA+CGG - chr2_3:40397201-40397220 Msa0291750:intron 45.0%
GAAATAGACCCTAGTGACCA+AGG - chr2_3:40397280-40397299 Msa0291750:intron 45.0%
!!! ATGGGTGCTGGTCAATTTTC+AGG - chr2_3:40397307-40397326 Msa0291750:intron 45.0%
!!! TGGGTGCTGGTCAATTTTCA+GGG - chr2_3:40397308-40397327 Msa0291750:intron 45.0%
TAGACACGGAGACACTATCA+TGG - chr2_3:40397344-40397363 Msa0291750:intron 45.0%
TTGGACGATAAGGTGGAATC+AGG - chr2_3:40397373-40397392 Msa0291750:intron 45.0%
CATTACCGTAAACGATAGCG+AGG - chr2_3:40395546-40395565 Msa0291750:CDS 45.0%
! ATTGGCCTCGCTATCGTTTA+CGG + chr2_3:40395554-40395573 None:intergenic 45.0%
AACGATAGCGAGGCCAATTT+CGG - chr2_3:40395556-40395575 Msa0291750:CDS 45.0%
TTCTTTGGTACGTCAGAGTG+TGG - chr2_3:40395592-40395611 Msa0291750:CDS 45.0%
ATAGACCTTCTGTCCTACGA+CGG + chr2_3:40396642-40396661 None:intergenic 45.0%
GGACAGAAGGTCTATGCATT+CGG - chr2_3:40396647-40396666 Msa0291750:intron 45.0%
TGGTCAGTAGCCAATGTATC+CGG - chr2_3:40396737-40396756 Msa0291750:intron 45.0%
! AACATACACGTGTCGCTCAT+CGG + chr2_3:40396954-40396973 None:intergenic 45.0%
! GAGCGACACGTGTATGTTTT+CGG - chr2_3:40396956-40396975 Msa0291750:intron 45.0%
TGGGCCTTTGATGTTGTAGA+TGG - chr2_3:40397013-40397032 Msa0291750:intron 45.0%
TTGCAACTTTCACCAGGAGA+TGG + chr2_3:40397055-40397074 None:intergenic 45.0%
ATCTCCTGGTGAAAGTTGCA+AGG - chr2_3:40397054-40397073 Msa0291750:intron 45.0%
TCTCCTGGTGAAAGTTGCAA+GGG - chr2_3:40397055-40397074 Msa0291750:intron 45.0%
AAAGTTGCAAGGGAAGAGGT+GGG - chr2_3:40397065-40397084 Msa0291750:intron 45.0%
!! TGGGTTGTGTATGGTTTTGC+TGG - chr2_3:40397118-40397137 Msa0291750:intron 45.0%
!! TGGTTTTGCTGGAATGGAAG+TGG - chr2_3:40397129-40397148 Msa0291750:intron 45.0%
!!! CACTTGGGCCCATGTTTTTT+GGG + chr2_3:40397179-40397198 None:intergenic 45.0%
! AACAAGCGGGCTTAAACCAA+CGG - chr2_3:40397201-40397220 Msa0291750:intron 45.0%
GAAATAGACCCTAGTGACCA+AGG - chr2_3:40397280-40397299 Msa0291750:intron 45.0%
!!! ATGGGTGCTGGTCAATTTTC+AGG - chr2_3:40397307-40397326 Msa0291750:intron 45.0%
!!! TGGGTGCTGGTCAATTTTCA+GGG - chr2_3:40397308-40397327 Msa0291750:intron 45.0%
TAGACACGGAGACACTATCA+TGG - chr2_3:40397344-40397363 Msa0291750:intron 45.0%
TTGGACGATAAGGTGGAATC+AGG - chr2_3:40397373-40397392 Msa0291750:intron 45.0%
CAGAGTGTGGATTCCAGCAA+TGG - chr2_3:40395605-40395624 Msa0291750:CDS 50.0%
!! CCATGAAGTATCGCCATTGC+TGG + chr2_3:40395621-40395640 None:intergenic 50.0%
CCAGCAATGGCGATACTTCA+TGG - chr2_3:40395618-40395637 Msa0291750:CDS 50.0%
TGGCGATACTTCATGGCAGT+TGG - chr2_3:40395625-40395644 Msa0291750:CDS 50.0%
GGCGATACTTCATGGCAGTT+GGG - chr2_3:40395626-40395645 Msa0291750:CDS 50.0%
ACTTCATGGCAGTTGGGTCA+AGG - chr2_3:40395632-40395651 Msa0291750:CDS 50.0%
CTCCGCATCCTTACATCTAC+AGG + chr2_3:40396121-40396140 None:intergenic 50.0%
CTGTAGATGTAAGGATGCGG+AGG - chr2_3:40396119-40396138 Msa0291750:CDS 50.0%
TATGCAAGCGATAGCGAGAG+TGG + chr2_3:40396245-40396264 None:intergenic 50.0%
TCACATGCTATTGCCGTCGT+AGG - chr2_3:40396626-40396645 Msa0291750:intron 50.0%
TATTGCCGTCGTAGGACAGA+AGG - chr2_3:40396634-40396653 Msa0291750:intron 50.0%
CAGAAGGTCTATGCATTCGG+TGG - chr2_3:40396650-40396669 Msa0291750:intron 50.0%
TTGTTGTCGACAGGAACACG+AGG + chr2_3:40396686-40396705 None:intergenic 50.0%
GAGATATTGGGCCTCCTAAC+CGG - chr2_3:40396909-40396928 Msa0291750:intron 50.0%
! CGACACGTGTATGTTTTCGG+CGG - chr2_3:40396959-40396978 Msa0291750:intron 50.0%
TGTTGTAGATGGCAAGTGGG+TGG - chr2_3:40397024-40397043 Msa0291750:intron 50.0%
TGGGTGGAATTTCCATCTCC+TGG - chr2_3:40397040-40397059 Msa0291750:intron 50.0%
CTTCCCTTGCAACTTTCACC+AGG + chr2_3:40397061-40397080 None:intergenic 50.0%
GGTGAAAGTTGCAAGGGAAG+AGG - chr2_3:40397061-40397080 Msa0291750:intron 50.0%
GAAAGTTGCAAGGGAAGAGG+TGG - chr2_3:40397064-40397083 Msa0291750:intron 50.0%
TGACGTGCATTTCTTCGACC+TGG - chr2_3:40397153-40397172 Msa0291750:intron 50.0%
TCGACCTGGCCCAAAAAACA+TGG - chr2_3:40397167-40397186 Msa0291750:intron 50.0%
CGACCTGGCCCAAAAAACAT+GGG - chr2_3:40397168-40397187 Msa0291750:intron 50.0%
!!! CCACTTGGGCCCATGTTTTT+TGG + chr2_3:40397180-40397199 None:intergenic 50.0%
CCAAAAAACATGGGCCCAAG+TGG - chr2_3:40397177-40397196 Msa0291750:intron 50.0%
AAGCCCGCTTGTTTCCACTT+GGG + chr2_3:40397194-40397213 None:intergenic 50.0%
TAAGCCCGCTTGTTTCCACT+TGG + chr2_3:40397195-40397214 None:intergenic 50.0%
CCATGTGACCTTGGTCACTA+GGG + chr2_3:40397291-40397310 None:intergenic 50.0%
CCTAGTGACCAAGGTCACAT+GGG - chr2_3:40397289-40397308 Msa0291750:intron 50.0%
!!! GGGTGCTGGTCAATTTTCAG+GGG - chr2_3:40397309-40397328 Msa0291750:intron 50.0%
GACACTATCATGGACGAGGT+TGG - chr2_3:40397354-40397373 Msa0291750:intron 50.0%
ATGGACGAGGTTGGACGATA+AGG - chr2_3:40397363-40397382 Msa0291750:intron 50.0%
TGGAATCAGGTGACCATCCA+GGG - chr2_3:40397386-40397405 Msa0291750:intron 50.0%
ATAATCCCTCTTGGCTGCCT+CGG + chr2_3:40397444-40397463 None:intergenic 50.0%
TCATCAAGCCTGTCGTTGCT+AGG + chr2_3:40397487-40397506 None:intergenic 50.0%
CAGAGTGTGGATTCCAGCAA+TGG - chr2_3:40395605-40395624 Msa0291750:CDS 50.0%
!! CCATGAAGTATCGCCATTGC+TGG + chr2_3:40395621-40395640 None:intergenic 50.0%
CCAGCAATGGCGATACTTCA+TGG - chr2_3:40395618-40395637 Msa0291750:CDS 50.0%
TGGCGATACTTCATGGCAGT+TGG - chr2_3:40395625-40395644 Msa0291750:CDS 50.0%
GGCGATACTTCATGGCAGTT+GGG - chr2_3:40395626-40395645 Msa0291750:CDS 50.0%
ACTTCATGGCAGTTGGGTCA+AGG - chr2_3:40395632-40395651 Msa0291750:CDS 50.0%
CTCCGCATCCTTACATCTAC+AGG + chr2_3:40396121-40396140 None:intergenic 50.0%
CTGTAGATGTAAGGATGCGG+AGG - chr2_3:40396119-40396138 Msa0291750:CDS 50.0%
TATGCAAGCGATAGCGAGAG+TGG + chr2_3:40396245-40396264 None:intergenic 50.0%
TCACATGCTATTGCCGTCGT+AGG - chr2_3:40396626-40396645 Msa0291750:intron 50.0%
TATTGCCGTCGTAGGACAGA+AGG - chr2_3:40396634-40396653 Msa0291750:intron 50.0%
CAGAAGGTCTATGCATTCGG+TGG - chr2_3:40396650-40396669 Msa0291750:intron 50.0%
TTGTTGTCGACAGGAACACG+AGG + chr2_3:40396686-40396705 None:intergenic 50.0%
GAGATATTGGGCCTCCTAAC+CGG - chr2_3:40396909-40396928 Msa0291750:intron 50.0%
! CGACACGTGTATGTTTTCGG+CGG - chr2_3:40396959-40396978 Msa0291750:intron 50.0%
TGTTGTAGATGGCAAGTGGG+TGG - chr2_3:40397024-40397043 Msa0291750:intron 50.0%
TGGGTGGAATTTCCATCTCC+TGG - chr2_3:40397040-40397059 Msa0291750:intron 50.0%
CTTCCCTTGCAACTTTCACC+AGG + chr2_3:40397061-40397080 None:intergenic 50.0%
GGTGAAAGTTGCAAGGGAAG+AGG - chr2_3:40397061-40397080 Msa0291750:intron 50.0%
GAAAGTTGCAAGGGAAGAGG+TGG - chr2_3:40397064-40397083 Msa0291750:intron 50.0%
TGACGTGCATTTCTTCGACC+TGG - chr2_3:40397153-40397172 Msa0291750:intron 50.0%
TCGACCTGGCCCAAAAAACA+TGG - chr2_3:40397167-40397186 Msa0291750:intron 50.0%
CGACCTGGCCCAAAAAACAT+GGG - chr2_3:40397168-40397187 Msa0291750:intron 50.0%
!!! CCACTTGGGCCCATGTTTTT+TGG + chr2_3:40397180-40397199 None:intergenic 50.0%
CCAAAAAACATGGGCCCAAG+TGG - chr2_3:40397177-40397196 Msa0291750:intron 50.0%
AAGCCCGCTTGTTTCCACTT+GGG + chr2_3:40397194-40397213 None:intergenic 50.0%
TAAGCCCGCTTGTTTCCACT+TGG + chr2_3:40397195-40397214 None:intergenic 50.0%
CCATGTGACCTTGGTCACTA+GGG + chr2_3:40397291-40397310 None:intergenic 50.0%
CCTAGTGACCAAGGTCACAT+GGG - chr2_3:40397289-40397308 Msa0291750:intron 50.0%
!!! GGGTGCTGGTCAATTTTCAG+GGG - chr2_3:40397309-40397328 Msa0291750:intron 50.0%
GACACTATCATGGACGAGGT+TGG - chr2_3:40397354-40397373 Msa0291750:intron 50.0%
ATGGACGAGGTTGGACGATA+AGG - chr2_3:40397363-40397382 Msa0291750:intron 50.0%
TGGAATCAGGTGACCATCCA+GGG - chr2_3:40397386-40397405 Msa0291750:intron 50.0%
ATAATCCCTCTTGGCTGCCT+CGG + chr2_3:40397444-40397463 None:intergenic 50.0%
TCATCAAGCCTGTCGTTGCT+AGG + chr2_3:40397487-40397506 None:intergenic 50.0%
!! TGGGGTGTTGCCGGATACAT+TGG + chr2_3:40396750-40396769 None:intergenic 55.0%
! GGTGTCACAATGGCTGCAGT+TGG - chr2_3:40396782-40396801 Msa0291750:intron 55.0%
ATGGAGTGGTAGCTCCGGTT+AGG + chr2_3:40396926-40396945 None:intergenic 55.0%
CAGTCATGGAGTGGTAGCTC+CGG + chr2_3:40396931-40396950 None:intergenic 55.0%
! GTGTATGTTTTCGGCGGCTG+TGG - chr2_3:40396965-40396984 Msa0291750:intron 55.0%
TGGGCCCAAGTGGAAACAAG+CGG - chr2_3:40397187-40397206 Msa0291750:intron 55.0%
GAAAACACACTACGGGCCGT+TGG + chr2_3:40397220-40397239 None:intergenic 55.0%
CCCTAGTGACCAAGGTCACA+TGG - chr2_3:40397288-40397307 Msa0291750:intron 55.0%
CCCATGTGACCTTGGTCACT+AGG + chr2_3:40397292-40397311 None:intergenic 55.0%
CGGAGACACTATCATGGACG+AGG - chr2_3:40397350-40397369 Msa0291750:intron 55.0%
GACGAGGTTGGACGATAAGG+TGG - chr2_3:40397366-40397385 Msa0291750:intron 55.0%
GTGGAATCAGGTGACCATCC+AGG - chr2_3:40397385-40397404 Msa0291750:intron 55.0%
GCAACTCACCTAGCAACGAC+AGG - chr2_3:40397476-40397495 Msa0291750:five_prime_UTR 55.0%
!! TGGGGTGTTGCCGGATACAT+TGG + chr2_3:40396750-40396769 None:intergenic 55.0%
! GGTGTCACAATGGCTGCAGT+TGG - chr2_3:40396782-40396801 Msa0291750:intron 55.0%
ATGGAGTGGTAGCTCCGGTT+AGG + chr2_3:40396926-40396945 None:intergenic 55.0%
CAGTCATGGAGTGGTAGCTC+CGG + chr2_3:40396931-40396950 None:intergenic 55.0%
! GTGTATGTTTTCGGCGGCTG+TGG - chr2_3:40396965-40396984 Msa0291750:intron 55.0%
TGGGCCCAAGTGGAAACAAG+CGG - chr2_3:40397187-40397206 Msa0291750:intron 55.0%
GAAAACACACTACGGGCCGT+TGG + chr2_3:40397220-40397239 None:intergenic 55.0%
CCCTAGTGACCAAGGTCACA+TGG - chr2_3:40397288-40397307 Msa0291750:intron 55.0%
CCCATGTGACCTTGGTCACT+AGG + chr2_3:40397292-40397311 None:intergenic 55.0%
CGGAGACACTATCATGGACG+AGG - chr2_3:40397350-40397369 Msa0291750:intron 55.0%
GACGAGGTTGGACGATAAGG+TGG - chr2_3:40397366-40397385 Msa0291750:intron 55.0%
GTGGAATCAGGTGACCATCC+AGG - chr2_3:40397385-40397404 Msa0291750:intron 55.0%
GCAACTCACCTAGCAACGAC+AGG - chr2_3:40397476-40397495 Msa0291750:five_prime_UTR 55.0%
ATTGTGACACCGACGCGTGG+TGG + chr2_3:40396773-40396792 None:intergenic 60.0%
!! ACCACGCGTCGGTGTCACAA+TGG - chr2_3:40396772-40396791 Msa0291750:intron 60.0%
GAGTGGTAGCTCCGGTTAGG+AGG + chr2_3:40396923-40396942 None:intergenic 60.0%
GCTCATCGGCAGTCATGGAG+TGG + chr2_3:40396940-40396959 None:intergenic 60.0%
! GTGTCGCTCATCGGCAGTCA+TGG + chr2_3:40396945-40396964 None:intergenic 60.0%
! TGTTTTCGGCGGCTGTGGAG+TGG - chr2_3:40396970-40396989 Msa0291750:intron 60.0%
TTGCAAGGGAAGAGGTGGGC+CGG - chr2_3:40397069-40397088 Msa0291750:intron 60.0%
CCTTGGGCAACTGTTAGGCC+CGG + chr2_3:40397091-40397110 None:intergenic 60.0%
!!! GGGCCCATGTTTTTTGGGCC+AGG + chr2_3:40397174-40397193 None:intergenic 60.0%
GGGCCCAAGTGGAAACAAGC+GGG - chr2_3:40397188-40397207 Msa0291750:intron 60.0%
GACCAAGGTCACATGGGTGC+TGG - chr2_3:40397295-40397314 Msa0291750:intron 60.0%
GACCAGCACCCATGTGACCT+TGG + chr2_3:40397300-40397319 None:intergenic 60.0%
ATTGTGACACCGACGCGTGG+TGG + chr2_3:40396773-40396792 None:intergenic 60.0%
!! ACCACGCGTCGGTGTCACAA+TGG - chr2_3:40396772-40396791 Msa0291750:intron 60.0%
GAGTGGTAGCTCCGGTTAGG+AGG + chr2_3:40396923-40396942 None:intergenic 60.0%
GCTCATCGGCAGTCATGGAG+TGG + chr2_3:40396940-40396959 None:intergenic 60.0%
! GTGTCGCTCATCGGCAGTCA+TGG + chr2_3:40396945-40396964 None:intergenic 60.0%
! TGTTTTCGGCGGCTGTGGAG+TGG - chr2_3:40396970-40396989 Msa0291750:intron 60.0%
TTGCAAGGGAAGAGGTGGGC+CGG - chr2_3:40397069-40397088 Msa0291750:intron 60.0%
CCTTGGGCAACTGTTAGGCC+CGG + chr2_3:40397091-40397110 None:intergenic 60.0%
!!! GGGCCCATGTTTTTTGGGCC+AGG + chr2_3:40397174-40397193 None:intergenic 60.0%
GGGCCCAAGTGGAAACAAGC+GGG - chr2_3:40397188-40397207 Msa0291750:intron 60.0%
GACCAAGGTCACATGGGTGC+TGG - chr2_3:40397295-40397314 Msa0291750:intron 60.0%
GACCAGCACCCATGTGACCT+TGG + chr2_3:40397300-40397319 None:intergenic 60.0%
AACACCCCACCACCACGCGT+CGG - chr2_3:40396761-40396780 Msa0291750:intron 65.0%
TGACACCGACGCGTGGTGGT+GGG + chr2_3:40396769-40396788 None:intergenic 65.0%
GCCATTGTGACACCGACGCG+TGG + chr2_3:40396776-40396795 None:intergenic 65.0%
TGCAAGGGAAGAGGTGGGCC+GGG - chr2_3:40397070-40397089 Msa0291750:intron 65.0%
CCGGGCCTAACAGTTGCCCA+AGG - chr2_3:40397088-40397107 Msa0291750:intron 65.0%
GTGACCATCCAGGGCCACGT+GGG - chr2_3:40397395-40397414 Msa0291750:CDS 65.0%
GCAAATGCGCACCACCCACG+TGG + chr2_3:40397412-40397431 None:intergenic 65.0%
CGTGGGTGGTGCGCATTTGC+CGG - chr2_3:40397412-40397431 Msa0291750:exon 65.0%
! GCATTTGCCGGTGCTAGCCG+AGG - chr2_3:40397424-40397443 Msa0291750:five_prime_UTR 65.0%
TTGGCTGCCTCGGCTAGCAC+CGG + chr2_3:40397434-40397453 None:intergenic 65.0%
TGCTAGCCGAGGCAGCCAAG+AGG - chr2_3:40397435-40397454 Msa0291750:five_prime_UTR 65.0%
GCTAGCCGAGGCAGCCAAGA+GGG - chr2_3:40397436-40397455 Msa0291750:five_prime_UTR 65.0%
AACACCCCACCACCACGCGT+CGG - chr2_3:40396761-40396780 Msa0291750:intron 65.0%
TGACACCGACGCGTGGTGGT+GGG + chr2_3:40396769-40396788 None:intergenic 65.0%
GCCATTGTGACACCGACGCG+TGG + chr2_3:40396776-40396795 None:intergenic 65.0%
TGCAAGGGAAGAGGTGGGCC+GGG - chr2_3:40397070-40397089 Msa0291750:intron 65.0%
CCGGGCCTAACAGTTGCCCA+AGG - chr2_3:40397088-40397107 Msa0291750:intron 65.0%
GTGACCATCCAGGGCCACGT+GGG - chr2_3:40397395-40397414 Msa0291750:CDS 65.0%
GCAAATGCGCACCACCCACG+TGG + chr2_3:40397412-40397431 None:intergenic 65.0%
CGTGGGTGGTGCGCATTTGC+CGG - chr2_3:40397412-40397431 Msa0291750:exon 65.0%
! GCATTTGCCGGTGCTAGCCG+AGG - chr2_3:40397424-40397443 Msa0291750:five_prime_UTR 65.0%
TTGGCTGCCTCGGCTAGCAC+CGG + chr2_3:40397434-40397453 None:intergenic 65.0%
TGCTAGCCGAGGCAGCCAAG+AGG - chr2_3:40397435-40397454 Msa0291750:five_prime_UTR 65.0%
GCTAGCCGAGGCAGCCAAGA+GGG - chr2_3:40397436-40397455 Msa0291750:five_prime_UTR 65.0%
!! GCGTGGTGGTGGGGTGTTGC+CGG + chr2_3:40396759-40396778 None:intergenic 70.0%
! GACACCGACGCGTGGTGGTG+GGG + chr2_3:40396768-40396787 None:intergenic 70.0%
GTGACACCGACGCGTGGTGG+TGG + chr2_3:40396770-40396789 None:intergenic 70.0%
TTCGGCGGCTGTGGAGTGGC+AGG - chr2_3:40396974-40396993 Msa0291750:intron 70.0%
GCGGCTGTGGAGTGGCAGGA+AGG - chr2_3:40396978-40396997 Msa0291750:intron 70.0%
GGTGACCATCCAGGGCCACG+TGG - chr2_3:40397394-40397413 Msa0291750:CDS 70.0%
ACCATCCAGGGCCACGTGGG+TGG - chr2_3:40397398-40397417 Msa0291750:CDS 70.0%
ACCACCCACGTGGCCCTGGA+TGG + chr2_3:40397402-40397421 None:intergenic 70.0%
!! GCGTGGTGGTGGGGTGTTGC+CGG + chr2_3:40396759-40396778 None:intergenic 70.0%
! GACACCGACGCGTGGTGGTG+GGG + chr2_3:40396768-40396787 None:intergenic 70.0%
GTGACACCGACGCGTGGTGG+TGG + chr2_3:40396770-40396789 None:intergenic 70.0%
TTCGGCGGCTGTGGAGTGGC+AGG - chr2_3:40396974-40396993 Msa0291750:intron 70.0%
GCGGCTGTGGAGTGGCAGGA+AGG - chr2_3:40396978-40396997 Msa0291750:intron 70.0%
GGTGACCATCCAGGGCCACG+TGG - chr2_3:40397394-40397413 Msa0291750:CDS 70.0%
ACCATCCAGGGCCACGTGGG+TGG - chr2_3:40397398-40397417 Msa0291750:CDS 70.0%
ACCACCCACGTGGCCCTGGA+TGG + chr2_3:40397402-40397421 None:intergenic 70.0%
! GCGCACCACCCACGTGGCCC+TGG + chr2_3:40397406-40397425 None:intergenic 80.0%
! GCGCACCACCCACGTGGCCC+TGG + chr2_3:40397406-40397425 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 40395506 40397537 40395506 ID=Msa0291750;Name=Msa0291750
chr2_3 mRNA 40395506 40397537 40395506 ID=Msa0291750-mRNA-1;Parent=Msa0291750;Name=Msa0291750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=118|1|0.5|1|1|1|2|0|325
chr2_3 exon 40395506 40396453 40395506 ID=Msa0291750-mRNA-1:exon:12983;Parent=Msa0291750-mRNA-1
chr2_3 exon 40397390 40397537 40397390 ID=Msa0291750-mRNA-1:exon:12982;Parent=Msa0291750-mRNA-1
chr2_3 five_prime_UTR 40397420 40397537 40397420 ID=Msa0291750-mRNA-1:five_prime_utr;Parent=Msa0291750-mRNA-1
chr2_3 CDS 40397390 40397419 40397390 ID=Msa0291750-mRNA-1:cds;Parent=Msa0291750-mRNA-1
chr2_3 CDS 40395506 40396453 40395506 ID=Msa0291750-mRNA-1:cds;Parent=Msa0291750-mRNA-1
Gene Sequence

>Msa0291750

ATGGCGATACTTCATGGCAGTTGGGTCAAGCTTGATCAAAGAGGAATCTTGCAAGGAGCAAGAAGTTCACATGCTATTGCCGTCGTAGGACAGAAGGTCTATGCATTCGGTGGTGAGTTTGAGCCTCGTGTTCCTGTCGACAACAAGTTACATGTGTATGACCTAGATACATTGACATGGTCAGTAGCCAATGTATCCGGCAACACCCCACCACCACGCGTCGGTGTCACAATGGCTGCAGTTGGAGAAACCATCTATGTATTTGGTGGAAGAGATGCTGAACACAATGAACTCAACGAGCTCTTTTCTTTTGACACTAAAACCAACAATTGGGCATTGATTTCAAGTGGAGATATTGGGCCTCCTAACCGGAGCTACCACTCCATGACTGCCGATGAGCGACACGTGTATGTTTTCGGCGGCTGTGGAGTGGCAGGAAGGCTCAATGATTTATGGGCCTTTGATGTTGTAGATGGCAAGTGGGTGGAATTTCCATCTCCTGGTGAAAGTTGCAAGGGAAGAGGTGGGCCGGGCCTAACAGTTGCCCAAGGAAAAATATGGGTTGTGTATGGTTTTGCTGGAATGGAAGTGGATGACGTGCATTTCTTCGACCTGGCCCAAAAAACATGGGCCCAAGTGGAAACAAGCGGGCTTAAACCAACGGCCCGTAGTGTGTTTTCAACTTGTTTGATTGGGAAACACATAATTGTATATGGTGGGGAAATAGACCCTAGTGACCAAGGTCACATGGGTGCTGGTCAATTTTCAGGGGAGCTTTATGCATTAGACACGGAGACACTATCATGGACGAGGTTGGACGATAAGGTGGAATCAGGTGACCATCCAGGGCCACGTGGGTGGTGCGCATTTGCCGGTGCTAGCCGAGGCAGCCAAGAGGGATTATTAGTGTATGGTGGCAACTCACCTAGCAACGACAGGCTTGATGACATTTTCTTCCTTGCTCTTGCTCAAAGTTAG
Protein sequence

>Msa0291750

MAILHGSWVKLDQRGILQGARSSHAIAVVGQKVYAFGGEFEPRVPVDNKLHVYDLDTLTWSVANVSGNTPPPRVGVTMAAVGETIYVFGGRDAEHNELNELFSFDTKTNNWALISSGDIGPPNRSYHSMTADERHVYVFGGCGVAGRLNDLWAFDVVDGKWVEFPSPGESCKGRGGPGLTVAQGKIWVVYGFAGMEVDDVHFFDLAQKTWAQVETSGLKPTARSVFSTCLIGKHIIVYGGEIDPSDQGHMGAGQFSGELYALDTETLSWTRLDDKVESGDHPGPRGWCAFAGASRGSQEGLLVYGGNSPSNDRLDDIFFLALAQS*