Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688820 | XP_013469869.1 | 94.472 | 199 | 11 | 0 | 1 | 199 | 1 | 199 | 2.28e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688820 | sp|Q84MC0|UGPI4_ARATH | 58.659 | 179 | 70 | 2 | 25 | 199 | 21 | 199 | 3.23e-71 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688820 | A0A072VQ56 | 94.472 | 199 | 11 | 0 | 1 | 199 | 1 | 199 | 1.09e-133 | 382 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040660 | Msa0688820 | 0.939545 | 1.062364e-99 | -8.615850e-47 |
| Msa0642950 | Msa0688820 | 0.802844 | 4.627094e-49 | -8.615850e-47 |
| Msa0688820 | Msa0818710 | 0.815010 | 1.150934e-51 | -8.615850e-47 |
| Msa0688820 | Msa0968350 | 0.896265 | 4.355781e-76 | -8.615850e-47 |
| Msa0688820 | Msa1037550 | 0.851091 | 1.112114e-60 | -8.615850e-47 |
| Msa0688820 | Msa1078930 | 0.890562 | 8.809874e-74 | -8.615850e-47 |
| Msa0688820 | Msa1123930 | 0.892289 | 1.821211e-74 | -8.615850e-47 |
| Msa0688820 | Msa1130430 | 0.828397 | 9.197389e-55 | -8.615850e-47 |
| Msa0688820 | Msa1131290 | 0.823685 | 1.212628e-53 | -8.615850e-47 |
| Msa0688820 | Msa1169230 | 0.867019 | 1.862855e-65 | -8.615850e-47 |
| Msa0688820 | Msa1222590 | 0.838711 | 2.444249e-57 | -8.615850e-47 |
| Msa0688820 | Msa1264570 | 0.877098 | 8.247627e-69 | -8.615850e-47 |
| Msa0688820 | Msa1340700 | 0.849520 | 3.067612e-60 | -8.615850e-47 |
| Msa0688820 | Msa1426070 | 0.889539 | 2.213296e-73 | -8.615850e-47 |
| Msa0688820 | Msa1430750 | 0.835525 | 1.595122e-56 | -8.615850e-47 |
| Msa0688820 | Msa1436420 | 0.835904 | 1.278763e-56 | -8.615850e-47 |
| Msa0688820 | Msa1445050 | 0.824689 | 7.046024e-54 | -8.615850e-47 |
| Msa0688820 | Msa1446110 | 0.852795 | 3.652264e-61 | -8.615850e-47 |
| Msa0184680 | Msa0688820 | 0.976074 | 3.901614e-141 | -8.615850e-47 |
| Msa0193850 | Msa0688820 | 0.837636 | 4.624870e-57 | -8.615850e-47 |
| Msa0199960 | Msa0688820 | 0.825306 | 5.037738e-54 | -8.615850e-47 |
| Msa0235710 | Msa0688820 | 0.833301 | 5.770000e-56 | -8.615850e-47 |
| Msa0379440 | Msa0688820 | 0.816487 | 5.391923e-52 | -8.615850e-47 |
| Msa0389500 | Msa0688820 | 0.816262 | 6.056026e-52 | -8.615850e-47 |
| Msa0475290 | Msa0688820 | 0.825723 | 4.013132e-54 | -8.615850e-47 |
| Msa0242490 | Msa0688820 | 0.813070 | 3.083102e-51 | -8.615850e-47 |
| Msa0243600 | Msa0688820 | 0.826899 | 2.105746e-54 | -8.615850e-47 |
| Msa0274440 | Msa0688820 | 0.860403 | 2.116047e-63 | -8.615850e-47 |
| Msa0280690 | Msa0688820 | 0.838629 | 2.566794e-57 | -8.615850e-47 |
| Msa0282220 | Msa0688820 | 0.844966 | 5.448741e-59 | -8.615850e-47 |
| Msa0314170 | Msa0688820 | 0.853059 | 3.068393e-61 | -8.615850e-47 |
| Msa0319940 | Msa0688820 | 0.839283 | 1.738509e-57 | -8.615850e-47 |
| Msa0487500 | Msa0688820 | 0.813170 | 2.931613e-51 | -8.615850e-47 |
| Msa0547110 | Msa0688820 | 0.806297 | 8.809247e-50 | -8.615850e-47 |
| Msa0601820 | Msa0688820 | 0.826087 | 3.288070e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688820 | MtrunA17_Chr1g0205951 | 94.472 | 199 | 11 | 0 | 1 | 199 | 1 | 199 | 2.10e-137 | 382 |
| Msa0688820 | MtrunA17_Chr5g0394151 | 63.902 | 205 | 64 | 2 | 1 | 199 | 1 | 201 | 5.20e-96 | 277 |
| Msa0688820 | MtrunA17_Chr1g0191761 | 36.943 | 157 | 96 | 3 | 20 | 173 | 26 | 182 | 8.28e-32 | 114 |
| Msa0688820 | MtrunA17_Chr7g0272941 | 38.889 | 144 | 84 | 3 | 19 | 159 | 17 | 159 | 3.24e-31 | 112 |
| Msa0688820 | MtrunA17_Chr1g0191781 | 32.727 | 165 | 105 | 3 | 11 | 169 | 6 | 170 | 1.18e-27 | 103 |
| Msa0688820 | MtrunA17_Chr1g0191771 | 34.328 | 134 | 87 | 1 | 31 | 163 | 46 | 179 | 2.74e-23 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688820 | AT3G06035.1 | 58.659 | 179 | 70 | 2 | 25 | 199 | 21 | 199 | 3.29e-72 | 217 |
| Msa0688820 | AT5G19250.1 | 61.078 | 167 | 63 | 1 | 24 | 188 | 19 | 185 | 1.92e-68 | 207 |
| Msa0688820 | AT1G54860.1 | 41.808 | 177 | 85 | 4 | 1 | 168 | 2 | 169 | 1.06e-46 | 152 |
| Msa0688820 | AT5G19240.1 | 45.349 | 172 | 88 | 3 | 23 | 192 | 20 | 187 | 2.24e-46 | 152 |
| Msa0688820 | AT5G19230.2 | 45.562 | 169 | 80 | 3 | 1 | 169 | 1 | 157 | 4.04e-41 | 138 |
| Msa0688820 | AT5G19230.1 | 45.562 | 169 | 80 | 3 | 1 | 169 | 1 | 157 | 4.04e-41 | 138 |
Find 42 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTGACATTTAGCTAAA+AGG | 0.190847 | 4_4:+55079701 | None:intergenic |
| CCAAGTTCTCTCTATTCTTC+TGG | 0.209568 | 4_4:-55080523 | Msa0688820:CDS |
| GTTATGCCTGCCTGTGTTCC+TGG | 0.264326 | 4_4:-55079652 | Msa0688820:CDS |
| TCCAACTTTGGAAATCAAAT+TGG | 0.265283 | 4_4:+55079459 | None:intergenic |
| TGAGAGAGATAATCTTTATC+AGG | 0.299934 | 4_4:-55079893 | Msa0688820:CDS |
| TGACATTTAGCTAAAAGGTT+TGG | 0.301742 | 4_4:+55079706 | None:intergenic |
| AGCTAAAAGGTTTGGGTAGT+TGG | 0.318984 | 4_4:+55079714 | None:intergenic |
| GTATTGGCTCAGAAGATAAC+TGG | 0.333128 | 4_4:-55079546 | Msa0688820:CDS |
| GACATTTAGCTAAAAGGTTT+GGG | 0.340607 | 4_4:+55079707 | None:intergenic |
| CCAGAAGAATAGAGAGAACT+TGG | 0.347419 | 4_4:+55080523 | None:intergenic |
| GCAATAAATCATTCCAACTT+TGG | 0.358521 | 4_4:+55079447 | None:intergenic |
| TACATGGTTGATTCTTGAAT+TGG | 0.360348 | 4_4:+55079785 | None:intergenic |
| ATTGGCAGCATTAGAACTAT+AGG | 0.374058 | 4_4:+55079477 | None:intergenic |
| GCCAATTTGATTTCCAAAGT+TGG | 0.375408 | 4_4:-55079460 | Msa0688820:CDS |
| TTGGCAGCATTAGAACTATA+GGG | 0.380106 | 4_4:+55079478 | None:intergenic |
| CATCCTCTAGGTATCATAAC+AGG | 0.398840 | 4_4:+55079395 | None:intergenic |
| TCACCGTCATCACATTTAAC+TGG | 0.400596 | 4_4:+55080461 | None:intergenic |
| GACACACAGTATACAGGAAT+TGG | 0.421140 | 4_4:-55079568 | Msa0688820:CDS |
| TGCTCAATTCTCTTGTTAGC+TGG | 0.427277 | 4_4:-55079427 | Msa0688820:CDS |
| CTCAACGACACACAGTATAC+AGG | 0.481619 | 4_4:-55079574 | Msa0688820:CDS |
| TTGACCACTGACACTCCAAC+AGG | 0.483770 | 4_4:-55079511 | Msa0688820:CDS |
| TTTGGGTAGTTGGAGAATTG+AGG | 0.485525 | 4_4:+55079724 | None:intergenic |
| ATTGGCTATTTCTGATACAA+AGG | 0.497292 | 4_4:-55079683 | Msa0688820:CDS |
| ACGAGGCTTGAAGCTAGGCC+AGG | 0.504069 | 4_4:+55079634 | None:intergenic |
| TGAAGCTAGGCCAGGAACAC+AGG | 0.509872 | 4_4:+55079642 | None:intergenic |
| GCTAGGCCAGGAACACAGGC+AGG | 0.513127 | 4_4:+55079646 | None:intergenic |
| GAGAATTGAGGTTCAGTACC+TGG | 0.522201 | 4_4:+55079736 | None:intergenic |
| GCTATTTCTGATACAAAGGA+TGG | 0.531181 | 4_4:-55079679 | Msa0688820:CDS |
| CAGTATACAGGAATTGGTAT+TGG | 0.536270 | 4_4:-55079562 | Msa0688820:CDS |
| GCACCTGTGGTATTTGTACA+TGG | 0.542966 | 4_4:+55079769 | None:intergenic |
| TCGTGAAGTTAGTGAGGACG+AGG | 0.562843 | 4_4:+55079617 | None:intergenic |
| TGAGGACGAGGCTTGAAGCT+AGG | 0.566605 | 4_4:+55079629 | None:intergenic |
| GTTTCCTGTTGGAGTGTCAG+TGG | 0.576612 | 4_4:+55079507 | None:intergenic |
| GAGATTTCGTGAAGTTAGTG+AGG | 0.582648 | 4_4:+55079611 | None:intergenic |
| GAGAGAGATAATCTTTATCA+GGG | 0.592178 | 4_4:-55079892 | Msa0688820:CDS |
| TATCCAGTTAAATGTGATGA+CGG | 0.600716 | 4_4:-55080464 | Msa0688820:intron |
| TGGTACTGTATTAGCACCTG+TGG | 0.607702 | 4_4:+55079756 | None:intergenic |
| TGGCAGCATTAGAACTATAG+GGG | 0.612217 | 4_4:+55079479 | None:intergenic |
| ACAGGTGCTAATACAGTACC+AGG | 0.621692 | 4_4:-55079754 | Msa0688820:CDS |
| CAGAAGAATAGAGAGAACTT+GGG | 0.624874 | 4_4:+55080524 | None:intergenic |
| CAACCATGTACAAATACCAC+AGG | 0.631778 | 4_4:-55079772 | Msa0688820:CDS |
| GGCAGCATTAGAACTATAGG+GGG | 0.666389 | 4_4:+55079480 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGACCAATACAAAATA+TGG | + | chr4_4:55079561-55079580 | None:intergenic | 20.0% |
| !!! | ATTTTGACCAATACAAAATA+TGG | + | chr4_4:55079561-55079580 | None:intergenic | 20.0% |
| !! | TCTTAGACCATATTTTGTAT+TGG | - | chr4_4:55079551-55079570 | Msa0688820:CDS | 25.0% |
| ! | ATTCATGAGATTAATGTCAT+TGG | - | chr4_4:55079626-55079645 | Msa0688820:CDS | 25.0% |
| ! | ATTCATGAGATTAATGTCAT+TGG | - | chr4_4:55079626-55079645 | Msa0688820:CDS | 25.0% |
| !! | TCTTAGACCATATTTTGTAT+TGG | - | chr4_4:55079551-55079570 | Msa0688820:CDS | 25.0% |
| ! | ATTCATGAGATTAATGTCAT+TGG | - | chr4_4:55079626-55079645 | Msa0688820:CDS | 25.0% |
| ! | ATTCATGAGATTAATGTCAT+TGG | - | chr4_4:55079626-55079645 | Msa0688820:CDS | 25.0% |
| TATCCAGTTAAATGTGATGA+CGG | - | chr4_4:55079477-55079496 | Msa0688820:CDS | 30.0% | |
| TGTCAGTGAACAAAATGATT+TGG | + | chr4_4:55079920-55079939 | None:intergenic | 30.0% | |
| TTTCAGCTTCATTGTGTATA+TGG | + | chr4_4:55079986-55080005 | None:intergenic | 30.0% | |
| TGCAGAAAAAACATTGAACA+GGG | + | chr4_4:55080026-55080045 | None:intergenic | 30.0% | |
| TGAGAGAGATAATCTTTATC+AGG | - | chr4_4:55080048-55080067 | Msa0688820:intron | 30.0% | |
| GAGAGAGATAATCTTTATCA+GGG | - | chr4_4:55080049-55080068 | Msa0688820:intron | 30.0% | |
| ! | TACATGGTTGATTCTTGAAT+TGG | + | chr4_4:55080159-55080178 | None:intergenic | 30.0% |
| GACATTTAGCTAAAAGGTTT+GGG | + | chr4_4:55080237-55080256 | None:intergenic | 30.0% | |
| TGACATTTAGCTAAAAGGTT+TGG | + | chr4_4:55080238-55080257 | None:intergenic | 30.0% | |
| CCAATTGACATTTAGCTAAA+AGG | + | chr4_4:55080243-55080262 | None:intergenic | 30.0% | |
| !! | CCTTTTAGCTAAATGTCAAT+TGG | - | chr4_4:55080240-55080259 | Msa0688820:intron | 30.0% |
| !! | ATTGGCTATTTCTGATACAA+AGG | - | chr4_4:55080258-55080277 | Msa0688820:intron | 30.0% |
| ! | TCCAACTTTGGAAATCAAAT+TGG | + | chr4_4:55080485-55080504 | None:intergenic | 30.0% |
| GCAATAAATCATTCCAACTT+TGG | + | chr4_4:55080497-55080516 | None:intergenic | 30.0% | |
| TATCCAGTTAAATGTGATGA+CGG | - | chr4_4:55079477-55079496 | Msa0688820:CDS | 30.0% | |
| TGTCAGTGAACAAAATGATT+TGG | + | chr4_4:55079920-55079939 | None:intergenic | 30.0% | |
| TTTCAGCTTCATTGTGTATA+TGG | + | chr4_4:55079986-55080005 | None:intergenic | 30.0% | |
| TGCAGAAAAAACATTGAACA+GGG | + | chr4_4:55080026-55080045 | None:intergenic | 30.0% | |
| TGAGAGAGATAATCTTTATC+AGG | - | chr4_4:55080048-55080067 | Msa0688820:intron | 30.0% | |
| GAGAGAGATAATCTTTATCA+GGG | - | chr4_4:55080049-55080068 | Msa0688820:intron | 30.0% | |
| ! | TACATGGTTGATTCTTGAAT+TGG | + | chr4_4:55080159-55080178 | None:intergenic | 30.0% |
| GACATTTAGCTAAAAGGTTT+GGG | + | chr4_4:55080237-55080256 | None:intergenic | 30.0% | |
| TGACATTTAGCTAAAAGGTT+TGG | + | chr4_4:55080238-55080257 | None:intergenic | 30.0% | |
| CCAATTGACATTTAGCTAAA+AGG | + | chr4_4:55080243-55080262 | None:intergenic | 30.0% | |
| !! | CCTTTTAGCTAAATGTCAAT+TGG | - | chr4_4:55080240-55080259 | Msa0688820:intron | 30.0% |
| !! | ATTGGCTATTTCTGATACAA+AGG | - | chr4_4:55080258-55080277 | Msa0688820:intron | 30.0% |
| ! | TCCAACTTTGGAAATCAAAT+TGG | + | chr4_4:55080485-55080504 | None:intergenic | 30.0% |
| GCAATAAATCATTCCAACTT+TGG | + | chr4_4:55080497-55080516 | None:intergenic | 30.0% | |
| CAGAAGAATAGAGAGAACTT+GGG | + | chr4_4:55079420-55079439 | None:intergenic | 35.0% | |
| CTAAGCTTGAAATGAGTCAT+GGG | + | chr4_4:55079699-55079718 | None:intergenic | 35.0% | |
| ATGCCTCTTAAAACATTCAC+TGG | - | chr4_4:55079819-55079838 | Msa0688820:CDS | 35.0% | |
| !! | TGTCCAGTGAATGTTTTAAG+AGG | + | chr4_4:55079825-55079844 | None:intergenic | 35.0% |
| CTGCAGAAAAAACATTGAAC+AGG | + | chr4_4:55080027-55080046 | None:intergenic | 35.0% | |
| !! | GCTATTTCTGATACAAAGGA+TGG | - | chr4_4:55080262-55080281 | Msa0688820:intron | 35.0% |
| CAGTATACAGGAATTGGTAT+TGG | - | chr4_4:55080379-55080398 | Msa0688820:intron | 35.0% | |
| TTGGCAGCATTAGAACTATA+GGG | + | chr4_4:55080466-55080485 | None:intergenic | 35.0% | |
| ATTGGCAGCATTAGAACTAT+AGG | + | chr4_4:55080467-55080486 | None:intergenic | 35.0% | |
| ! | GCCAATTTGATTTCCAAAGT+TGG | - | chr4_4:55080481-55080500 | Msa0688820:CDS | 35.0% |
| CAGAAGAATAGAGAGAACTT+GGG | + | chr4_4:55079420-55079439 | None:intergenic | 35.0% | |
| CTAAGCTTGAAATGAGTCAT+GGG | + | chr4_4:55079699-55079718 | None:intergenic | 35.0% | |
| ATGCCTCTTAAAACATTCAC+TGG | - | chr4_4:55079819-55079838 | Msa0688820:CDS | 35.0% | |
| !! | TGTCCAGTGAATGTTTTAAG+AGG | + | chr4_4:55079825-55079844 | None:intergenic | 35.0% |
| CTGCAGAAAAAACATTGAAC+AGG | + | chr4_4:55080027-55080046 | None:intergenic | 35.0% | |
| !! | GCTATTTCTGATACAAAGGA+TGG | - | chr4_4:55080262-55080281 | Msa0688820:intron | 35.0% |
| CAGTATACAGGAATTGGTAT+TGG | - | chr4_4:55080379-55080398 | Msa0688820:intron | 35.0% | |
| TTGGCAGCATTAGAACTATA+GGG | + | chr4_4:55080466-55080485 | None:intergenic | 35.0% | |
| ATTGGCAGCATTAGAACTAT+AGG | + | chr4_4:55080467-55080486 | None:intergenic | 35.0% | |
| ! | GCCAATTTGATTTCCAAAGT+TGG | - | chr4_4:55080481-55080500 | Msa0688820:CDS | 35.0% |
| CCAGAAGAATAGAGAGAACT+TGG | + | chr4_4:55079421-55079440 | None:intergenic | 40.0% | |
| CCAAGTTCTCTCTATTCTTC+TGG | - | chr4_4:55079418-55079437 | Msa0688820:CDS | 40.0% | |
| TCACCGTCATCACATTTAAC+TGG | + | chr4_4:55079483-55079502 | None:intergenic | 40.0% | |
| GCTAAGCTTGAAATGAGTCA+TGG | + | chr4_4:55079700-55079719 | None:intergenic | 40.0% | |
| TTGAGTAATGCACAGATGAC+AGG | + | chr4_4:55079850-55079869 | None:intergenic | 40.0% | |
| ! | TCTCAGTTGTGACCTTTTTC+TGG | - | chr4_4:55079941-55079960 | Msa0688820:intron | 40.0% |
| ACAGGGTAAGTGTAGTGTAA+TGG | + | chr4_4:55080009-55080028 | None:intergenic | 40.0% | |
| !! | GGTCAGCTATTTTATCAGCA+AGG | + | chr4_4:55080138-55080157 | None:intergenic | 40.0% |
| CAACCATGTACAAATACCAC+AGG | - | chr4_4:55080169-55080188 | Msa0688820:intron | 40.0% | |
| TTTGGGTAGTTGGAGAATTG+AGG | + | chr4_4:55080220-55080239 | None:intergenic | 40.0% | |
| AGCTAAAAGGTTTGGGTAGT+TGG | + | chr4_4:55080230-55080249 | None:intergenic | 40.0% | |
| GAGATTTCGTGAAGTTAGTG+AGG | + | chr4_4:55080333-55080352 | None:intergenic | 40.0% | |
| GACACACAGTATACAGGAAT+TGG | - | chr4_4:55080373-55080392 | Msa0688820:intron | 40.0% | |
| !! | GTATTGGCTCAGAAGATAAC+TGG | - | chr4_4:55080395-55080414 | Msa0688820:intron | 40.0% |
| TGGCAGCATTAGAACTATAG+GGG | + | chr4_4:55080465-55080484 | None:intergenic | 40.0% | |
| TGCTCAATTCTCTTGTTAGC+TGG | - | chr4_4:55080514-55080533 | Msa0688820:CDS | 40.0% | |
| CCAGAAGAATAGAGAGAACT+TGG | + | chr4_4:55079421-55079440 | None:intergenic | 40.0% | |
| CCAAGTTCTCTCTATTCTTC+TGG | - | chr4_4:55079418-55079437 | Msa0688820:CDS | 40.0% | |
| TCACCGTCATCACATTTAAC+TGG | + | chr4_4:55079483-55079502 | None:intergenic | 40.0% | |
| GCTAAGCTTGAAATGAGTCA+TGG | + | chr4_4:55079700-55079719 | None:intergenic | 40.0% | |
| TTGAGTAATGCACAGATGAC+AGG | + | chr4_4:55079850-55079869 | None:intergenic | 40.0% | |
| ! | TCTCAGTTGTGACCTTTTTC+TGG | - | chr4_4:55079941-55079960 | Msa0688820:intron | 40.0% |
| ACAGGGTAAGTGTAGTGTAA+TGG | + | chr4_4:55080009-55080028 | None:intergenic | 40.0% | |
| !! | GGTCAGCTATTTTATCAGCA+AGG | + | chr4_4:55080138-55080157 | None:intergenic | 40.0% |
| CAACCATGTACAAATACCAC+AGG | - | chr4_4:55080169-55080188 | Msa0688820:intron | 40.0% | |
| TTTGGGTAGTTGGAGAATTG+AGG | + | chr4_4:55080220-55080239 | None:intergenic | 40.0% | |
| AGCTAAAAGGTTTGGGTAGT+TGG | + | chr4_4:55080230-55080249 | None:intergenic | 40.0% | |
| GAGATTTCGTGAAGTTAGTG+AGG | + | chr4_4:55080333-55080352 | None:intergenic | 40.0% | |
| GACACACAGTATACAGGAAT+TGG | - | chr4_4:55080373-55080392 | Msa0688820:intron | 40.0% | |
| !! | GTATTGGCTCAGAAGATAAC+TGG | - | chr4_4:55080395-55080414 | Msa0688820:intron | 40.0% |
| TGGCAGCATTAGAACTATAG+GGG | + | chr4_4:55080465-55080484 | None:intergenic | 40.0% | |
| TGCTCAATTCTCTTGTTAGC+TGG | - | chr4_4:55080514-55080533 | Msa0688820:CDS | 40.0% | |
| TGTGCATGTGTGCCAGAAAA+AGG | + | chr4_4:55079956-55079975 | None:intergenic | 45.0% | |
| GCACCTGTGGTATTTGTACA+TGG | + | chr4_4:55080175-55080194 | None:intergenic | 45.0% | |
| TGGTACTGTATTAGCACCTG+TGG | + | chr4_4:55080188-55080207 | None:intergenic | 45.0% | |
| ACAGGTGCTAATACAGTACC+AGG | - | chr4_4:55080187-55080206 | Msa0688820:intron | 45.0% | |
| GAGAATTGAGGTTCAGTACC+TGG | + | chr4_4:55080208-55080227 | None:intergenic | 45.0% | |
| CTCAACGACACACAGTATAC+AGG | - | chr4_4:55080367-55080386 | Msa0688820:intron | 45.0% | |
| GGCAGCATTAGAACTATAGG+GGG | + | chr4_4:55080464-55080483 | None:intergenic | 45.0% | |
| TGTGCATGTGTGCCAGAAAA+AGG | + | chr4_4:55079956-55079975 | None:intergenic | 45.0% | |
| GCACCTGTGGTATTTGTACA+TGG | + | chr4_4:55080175-55080194 | None:intergenic | 45.0% | |
| TGGTACTGTATTAGCACCTG+TGG | + | chr4_4:55080188-55080207 | None:intergenic | 45.0% | |
| ACAGGTGCTAATACAGTACC+AGG | - | chr4_4:55080187-55080206 | Msa0688820:intron | 45.0% | |
| GAGAATTGAGGTTCAGTACC+TGG | + | chr4_4:55080208-55080227 | None:intergenic | 45.0% | |
| CTCAACGACACACAGTATAC+AGG | - | chr4_4:55080367-55080386 | Msa0688820:intron | 45.0% | |
| GGCAGCATTAGAACTATAGG+GGG | + | chr4_4:55080464-55080483 | None:intergenic | 45.0% | |
| TCATCGCAGTCGCGAGATTA+GGG | + | chr4_4:55079773-55079792 | None:intergenic | 50.0% | |
| TTCATCGCAGTCGCGAGATT+AGG | + | chr4_4:55079774-55079793 | None:intergenic | 50.0% | |
| TCGTGAAGTTAGTGAGGACG+AGG | + | chr4_4:55080327-55080346 | None:intergenic | 50.0% | |
| TTGACCACTGACACTCCAAC+AGG | - | chr4_4:55080430-55080449 | Msa0688820:intron | 50.0% | |
| ! | GTTTCCTGTTGGAGTGTCAG+TGG | + | chr4_4:55080437-55080456 | None:intergenic | 50.0% |
| TAGGGGGCAAAGTTTCCTGT+TGG | + | chr4_4:55080448-55080467 | None:intergenic | 50.0% | |
| TCATCGCAGTCGCGAGATTA+GGG | + | chr4_4:55079773-55079792 | None:intergenic | 50.0% | |
| TTCATCGCAGTCGCGAGATT+AGG | + | chr4_4:55079774-55079793 | None:intergenic | 50.0% | |
| TCGTGAAGTTAGTGAGGACG+AGG | + | chr4_4:55080327-55080346 | None:intergenic | 50.0% | |
| TTGACCACTGACACTCCAAC+AGG | - | chr4_4:55080430-55080449 | Msa0688820:intron | 50.0% | |
| ! | GTTTCCTGTTGGAGTGTCAG+TGG | + | chr4_4:55080437-55080456 | None:intergenic | 50.0% |
| TAGGGGGCAAAGTTTCCTGT+TGG | + | chr4_4:55080448-55080467 | None:intergenic | 50.0% | |
| GTTATGCCTGCCTGTGTTCC+TGG | - | chr4_4:55080289-55080308 | Msa0688820:intron | 55.0% | |
| TGAAGCTAGGCCAGGAACAC+AGG | + | chr4_4:55080302-55080321 | None:intergenic | 55.0% | |
| TGAGGACGAGGCTTGAAGCT+AGG | + | chr4_4:55080315-55080334 | None:intergenic | 55.0% | |
| GTTATGCCTGCCTGTGTTCC+TGG | - | chr4_4:55080289-55080308 | Msa0688820:intron | 55.0% | |
| TGAAGCTAGGCCAGGAACAC+AGG | + | chr4_4:55080302-55080321 | None:intergenic | 55.0% | |
| TGAGGACGAGGCTTGAAGCT+AGG | + | chr4_4:55080315-55080334 | None:intergenic | 55.0% | |
| ACGAGGCTTGAAGCTAGGCC+AGG | + | chr4_4:55080310-55080329 | None:intergenic | 60.0% | |
| ACGAGGCTTGAAGCTAGGCC+AGG | + | chr4_4:55080310-55080329 | None:intergenic | 60.0% | |
| GCTAGGCCAGGAACACAGGC+AGG | + | chr4_4:55080298-55080317 | None:intergenic | 65.0% | |
| GCTAGGCCAGGAACACAGGC+AGG | + | chr4_4:55080298-55080317 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 55079408 | 55080555 | 55079408 | ID=Msa0688820;Name=Msa0688820 |
| chr4_4 | mRNA | 55079408 | 55080555 | 55079408 | ID=Msa0688820-mRNA-1;Parent=Msa0688820;Name=Msa0688820-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|0|0.5|2|0|199 |
| chr4_4 | exon | 55080465 | 55080555 | 55080465 | ID=Msa0688820-mRNA-1:exon:14525;Parent=Msa0688820-mRNA-1 |
| chr4_4 | exon | 55079408 | 55079916 | 55079408 | ID=Msa0688820-mRNA-1:exon:14524;Parent=Msa0688820-mRNA-1 |
| chr4_4 | CDS | 55080465 | 55080555 | 55080465 | ID=Msa0688820-mRNA-1:cds;Parent=Msa0688820-mRNA-1 |
| chr4_4 | CDS | 55079408 | 55079916 | 55079408 | ID=Msa0688820-mRNA-1:cds;Parent=Msa0688820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
