AlfalfaGEDB | Msa1332110

M. sativa cultivar zhongmu-4 / Msa1332110

KEGG: K20043|K20044
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF07651.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1332110	sp\|Q9LHS0\|CAP10_ARATH	68.073	545	147	11	9	541	11	540	0.0	716

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1332110	G7JFD3	99.450	545	3	0	1	545	1	545	0.0	1127

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012780	Msa1332110	0.800462	1.425261e-48	-8.615850e-47
Msa0040410	Msa1332110	-0.802152	6.424092e-49	-8.615850e-47
Msa0040550	Msa1332110	0.833492	5.169407e-56	-8.615850e-47
Msa0043120	Msa1332110	0.801070	1.070881e-48	-8.615850e-47
Msa0090770	Msa1332110	0.803707	3.065238e-49	-8.615850e-47
Msa0106110	Msa1332110	0.807887	4.057159e-50	-8.615850e-47
Msa0106120	Msa1332110	0.812948	3.279460e-51	-8.615850e-47
Msa0175320	Msa1332110	0.821550	3.803966e-53	-8.615850e-47
Msa0258220	Msa1332110	0.820229	7.659608e-53	-8.615850e-47
Msa0381630	Msa1332110	0.804812	1.804972e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1332110	MtrunA17_Chr4g0064391	99.450	545	3	0	1	545	1	545	0.0	1127
Msa1332110	MtrunA17_Chr8g0376161	50.171	584	227	13	4	545	2	563	6.22e-177	510
Msa1332110	MtrunA17_Chr4g0071851	47.069	580	259	14	4	539	2	577	3.04e-156	458
Msa1332110	MtrunA17_Chr2g0298681	62.975	316	104	2	4	307	2	316	7.71e-141	419
Msa1332110	MtrunA17_Chr2g0305391	40.502	558	257	14	9	520	1	529	4.62e-124	375
Msa1332110	MtrunA17_Chr4g0064081	28.311	604	341	14	7	530	4	595	2.14e-69	234
Msa1332110	MtrunA17_Chr2g0278681	30.903	576	303	13	7	499	4	567	6.84e-67	227
Msa1332110	MtrunA17_Chr8g0336601	30.399	602	325	20	5	527	2	588	2.52e-66	225
Msa1332110	MtrunA17_Chr3g0119631	34.868	304	183	4	9	300	5	305	5.84e-60	213
Msa1332110	MtrunA17_Chr3g0137621	46.053	152	79	2	5	155	2	151	3.48e-38	148

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1332110	AT5G35200.1	68.073	545	147	11	9	541	11	540	0.0	716
Msa1332110	AT5G35200.2	68.073	545	147	11	9	541	11	540	0.0	716
Msa1332110	AT2G01600.1	48.480	592	233	15	4	545	2	571	3.76e-165	481
Msa1332110	AT4G25940.1	50.467	535	200	10	5	483	3	528	5.24e-161	471
Msa1332110	AT1G14910.1	50.487	513	206	11	4	483	2	499	1.15e-158	469
Msa1332110	AT1G14910.2	49.708	513	205	12	4	483	2	494	6.50e-153	454
Msa1332110	AT5G57200.1	64.669	317	100	2	4	309	2	317	1.39e-144	429
Msa1332110	AT1G03050.1	32.302	582	296	18	7	505	4	570	4.37e-73	244
Msa1332110	AT4G02650.1	28.293	615	350	13	7	542	4	606	1.19e-64	222
Msa1332110	AT4G32285.1	28.843	579	314	8	8	492	4	578	2.58e-63	219

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Find 188 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACTTGGAGCTCTTA+AGG	0.379703	8_4:+52009225	Msa1332110:CDS
AAAATCACGATCTATAAGGG+TGG	0.637634	8_4:-52008718	None:intergenic
AAAATGCTAGCTATAATCCA+TGG	0.481886	8_4:+52013792	Msa1332110:CDS
AAACATGGATACTCCACATT+TGG	0.384395	8_4:+52014116	Msa1332110:three_prime_UTR
AAAGATGACTCGAGTCCAAA+TGG	0.496856	8_4:+52010508	Msa1332110:CDS
AAATCGAACCTAAAACCTTG+AGG	0.689183	8_4:+52008420	Msa1332110:five_prime_UTR
AAATGCTAGCTATAATCCAT+GGG	0.626464	8_4:+52013793	Msa1332110:CDS
AACAAGAGCCAATTCCCACC+CGG	0.618163	8_4:-52013191	None:intergenic
AACAGGCATACCTGAGCCAT+AGG	0.555181	8_4:-52014035	None:intergenic
AACAGTTTGAGAAAAGCACT+TGG	0.582322	8_4:+52009214	Msa1332110:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAAATAGAACCCCTATAAG+TGG	-	chr8_4:52008278-52008297	None:intergenic	30.0%
CTTGGAGTCAAGATTAAATT+TGG	-	chr8_4:52008465-52008484	None:intergenic	30.0%
CAAATTTAATCTTGACTCCA+AGG	+	chr8_4:52008463-52008482	Msa1332110:five_prime_UTR	30.0%
CATTTCCACATAAACTTTGT+TGG	+	chr8_4:52009304-52009323	Msa1332110:intron	30.0%
TACAACCAACAAAGTTTATG+TGG	-	chr8_4:52009312-52009331	None:intergenic	30.0%
CAAAGAAGCAATCAAACATT+TGG	-	chr8_4:52009499-52009518	None:intergenic	30.0%
CAAATGTTTGATTGCTTCTT+TGG	+	chr8_4:52009497-52009516	Msa1332110:intron	30.0%
GAAGAGAACACATAAATACT+TGG	-	chr8_4:52009745-52009764	None:intergenic	30.0%
GATTATCAAAGACACATAAC+TGG	+	chr8_4:52009842-52009861	Msa1332110:CDS	30.0%
TTGCATGTGTGATGAATAAA+CGG	-	chr8_4:52010178-52010197	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	52008222	52014519	52008222	ID=Msa1332110;Name=Msa1332110
chr8_4	mRNA	52008222	52014519	52008222	ID=Msa1332110-mRNA-1;Parent=Msa1332110;Name=Msa1332110-mRNA-1;_AED=0.10;_eAED=0.10;_QI=528\|1\|1\|1\|0.87\|0.88\|17\|429\|545
chr8_4	exon	52008222	52008342	52008222	ID=Msa1332110-mRNA-1:exon:15520;Parent=Msa1332110-mRNA-1
chr8_4	exon	52008419	52008799	52008419	ID=Msa1332110-mRNA-1:exon:15521;Parent=Msa1332110-mRNA-1
chr8_4	exon	52009170	52009291	52009170	ID=Msa1332110-mRNA-1:exon:15522;Parent=Msa1332110-mRNA-1
chr8_4	exon	52009377	52009446	52009377	ID=Msa1332110-mRNA-1:exon:15523;Parent=Msa1332110-mRNA-1
chr8_4	exon	52009770	52009867	52009770	ID=Msa1332110-mRNA-1:exon:15524;Parent=Msa1332110-mRNA-1
chr8_4	exon	52010388	52010529	52010388	ID=Msa1332110-mRNA-1:exon:15525;Parent=Msa1332110-mRNA-1
chr8_4	exon	52010620	52010720	52010620	ID=Msa1332110-mRNA-1:exon:15526;Parent=Msa1332110-mRNA-1
chr8_4	exon	52010970	52011053	52010970	ID=Msa1332110-mRNA-1:exon:15527;Parent=Msa1332110-mRNA-1
chr8_4	exon	52011153	52011203	52011153	ID=Msa1332110-mRNA-1:exon:15528;Parent=Msa1332110-mRNA-1
chr8_4	exon	52011287	52011352	52011287	ID=Msa1332110-mRNA-1:exon:15529;Parent=Msa1332110-mRNA-1
chr8_4	exon	52011429	52011494	52011429	ID=Msa1332110-mRNA-1:exon:15530;Parent=Msa1332110-mRNA-1
chr8_4	exon	52011581	52011661	52011581	ID=Msa1332110-mRNA-1:exon:15531;Parent=Msa1332110-mRNA-1
chr8_4	exon	52011761	52011838	52011761	ID=Msa1332110-mRNA-1:exon:15532;Parent=Msa1332110-mRNA-1
chr8_4	exon	52012159	52012314	52012159	ID=Msa1332110-mRNA-1:exon:15533;Parent=Msa1332110-mRNA-1
chr8_4	exon	52012439	52012511	52012439	ID=Msa1332110-mRNA-1:exon:15534;Parent=Msa1332110-mRNA-1
chr8_4	exon	52013146	52013258	52013146	ID=Msa1332110-mRNA-1:exon:15535;Parent=Msa1332110-mRNA-1
chr8_4	exon	52013728	52014519	52013728	ID=Msa1332110-mRNA-1:exon:15536;Parent=Msa1332110-mRNA-1
chr8_4	five_prime_UTR	52008222	52008342	52008222	ID=Msa1332110-mRNA-1:five_prime_utr;Parent=Msa1332110-mRNA-1
chr8_4	five_prime_UTR	52008419	52008799	52008419	ID=Msa1332110-mRNA-1:five_prime_utr;Parent=Msa1332110-mRNA-1
chr8_4	five_prime_UTR	52009170	52009195	52009170	ID=Msa1332110-mRNA-1:five_prime_utr;Parent=Msa1332110-mRNA-1
chr8_4	CDS	52009196	52009291	52009196	ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1
chr8_4	CDS	52009377	52009446	52009377	ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1
chr8_4	CDS	52009770	52009867	52009770	ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1
chr8_4	CDS	52010388	52010529	52010388	ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1
chr8_4	CDS	52010620	52010720	52010620	ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1
chr8_4	CDS	52010970	52011053	52010970	ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1
chr8_4	CDS	52011153	52011203	52011153	ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1
chr8_4	CDS	52011287	52011352	52011287	ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1
chr8_4	CDS	52011429	52011494	52011429	ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1
chr8_4	CDS	52011581	52011661	52011581	ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1
chr8_4	CDS	52011761	52011838	52011761	ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1
chr8_4	CDS	52012159	52012314	52012159	ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1
chr8_4	CDS	52012439	52012511	52012439	ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1
chr8_4	CDS	52013146	52013258	52013146	ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1
chr8_4	CDS	52013728	52014090	52013728	ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1
chr8_4	three_prime_UTR	52014091	52014519	52014091	ID=Msa1332110-mRNA-1:three_prime_utr;Parent=Msa1332110-mRNA-1

Gene Sequence

>Msa1332110

ATGTCTGGTGGAACGCAGAACAGTTTGAGAAAAGCACTTGGAGCTCTTAAGGACACCACTACTGTCTCATTGGCTAAGGTCAACAGTGGTTACAAGGAGTTGGACATTGCTATCGTTCGAGCAACGAATCATGTTGAACGCCCAGCTAAGGAGAAACACATTCGAGCTATATTTTCAGCGATCTCAGCTACAAGACCTAGGGCTGACGTTGCCTATTGCATCCATGCTCTCGCTAGGCGATTATCAAAGACACATAACTGGGCTGTTGCTTTGAAAACTTTAATTGTCATTCACCGTGCTCTGAGGGAGGTGGATCCCACATTTCATGAAGAACTCATTAATTATGGGAGAAGTAGAAGTCATATGCTCAACATGGCTCATTTTAAAGATGACTCGAGTCCAAATGCATGGGATTATTCTGCATGGGTTCGCAGTTATGCATTATTTTTGGAGGAAAGGCTGGAATGTTTTCGTGTGTTGAAGTATGACATTGAGGCTGATCGTCCTAGGACCAAAGATTTGGATACTGCAGAATTGTTAGAGCAGTTGCCAGCTTTACAACAGCTTCTCTATCGAGTTATTGGTTGCCAGCCACAAGGAGCAGCTGTAAATAATTTTGTGATTCAGTTAGCACTCCAATTGGTTGCTTCGGAAAGCATTAAAATTTATCAAGCCATTAGTGATGGAACTGTTAATATGGTTGATAAGTTTTTTGAGATGCAACGGGAAGATGCCTTGAAAGCTCTTGATATATACAGAAGGGTTGGGCTGCAGGCTGAGAGACTGTCAGAGTTTTATGAAATATGCCGTAATCTTGATATTGGACGTGGAGAGAAGTTCATCAAAGTTGAGCAGCCCCCATCATCGTTTATGCAAGCCATGGAAGACTATGTCAAAGATGCTCCCCAGGGAGCAATAGTTCGAAAGGATCAGGCCGTTGACAACAAAATTGCTGCTCCAAAAGAAGTTTTGGCTATTGAATACAATAAGGAACCAGAAGTGAAGGAGGAACGTGCACCCTCGCCCCCTCCACCGTCTGAACCTGTGAAAGTGGAAACACCACCAGTACAACCACCACCTGATCTTTTGAATATGGATGATCCTGTTCCAGCTGCTGCAGAATTGGAAGAGAAGAATGCCTTGGCTTTAGCCATCGTTCCCGCTGATCAACAACCTTCTGCTGTTTCAAATCATGCAAATGGAACCGCCGGGTGGGAATTGGCTCTTGTTACAGCTCCTAGCTCAAATGAAAGTGCTGCAGCAGCTAGCAAATTGGCTGGAGGTTTGGACATGCTTACATTAGACAGCCTATATGATGATGCACTGAGAAGAAACAACCAAAATGCTAGCTATAATCCATGGGAGCAAGCACCGGCTGGAGGCATGATGCAACCGACAATGCACGATCCATTTTTTGCCTCTAATACAATGGCTGCTCCACACTCTGTTCAAATGGCAGCTATGTCAAACCAGCAACAGTCTTTCATGTATCAGCAGCAGCAGCAACAAATGATGATGATGGCCCCTCAACAACAATCTGCAAATCCTTTTGGAAATCCTCAATATGGAGCCACAGTTCACCCCTATGGCTCAGGTATGCCTGTTCAATCATACAATCCTTACACAGGCCTCATCTAA

Protein sequence

>Msa1332110

MSGGTQNSLRKALGALKDTTTVSLAKVNSGYKELDIAIVRATNHVERPAKEKHIRAIFSAISATRPRADVAYCIHALARRLSKTHNWAVALKTLIVIHRALREVDPTFHEELINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIEADRPRTKDLDTAELLEQLPALQQLLYRVIGCQPQGAAVNNFVIQLALQLVASESIKIYQAISDGTVNMVDKFFEMQREDALKALDIYRRVGLQAERLSEFYEICRNLDIGRGEKFIKVEQPPSSFMQAMEDYVKDAPQGAIVRKDQAVDNKIAAPKEVLAIEYNKEPEVKEERAPSPPPPSEPVKVETPPVQPPPDLLNMDDPVPAAAELEEKNALALAIVPADQQPSAVSNHANGTAGWELALVTAPSSNESAAAASKLAGGLDMLTLDSLYDDALRRNNQNASYNPWEQAPAGGMMQPTMHDPFFASNTMAAPHSVQMAAMSNQQQSFMYQQQQQQMMMMAPQQQSANPFGNPQYGATVHPYGSGMPVQSYNPYTGLI*