Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332110 | sp|Q9LHS0|CAP10_ARATH | 68.073 | 545 | 147 | 11 | 9 | 541 | 11 | 540 | 0.0 | 716 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332110 | G7JFD3 | 99.450 | 545 | 3 | 0 | 1 | 545 | 1 | 545 | 0.0 | 1127 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012780 | Msa1332110 | 0.800462 | 1.425261e-48 | -8.615850e-47 |
| Msa0040410 | Msa1332110 | -0.802152 | 6.424092e-49 | -8.615850e-47 |
| Msa0040550 | Msa1332110 | 0.833492 | 5.169407e-56 | -8.615850e-47 |
| Msa0043120 | Msa1332110 | 0.801070 | 1.070881e-48 | -8.615850e-47 |
| Msa0090770 | Msa1332110 | 0.803707 | 3.065238e-49 | -8.615850e-47 |
| Msa0106110 | Msa1332110 | 0.807887 | 4.057159e-50 | -8.615850e-47 |
| Msa0106120 | Msa1332110 | 0.812948 | 3.279460e-51 | -8.615850e-47 |
| Msa0659800 | Msa1332110 | 0.808981 | 2.371253e-50 | -8.615850e-47 |
| Msa0704470 | Msa1332110 | 0.809699 | 1.663376e-50 | -8.615850e-47 |
| Msa0790110 | Msa1332110 | 0.829444 | 5.129349e-55 | -8.615850e-47 |
| Msa0813320 | Msa1332110 | 0.801010 | 1.101790e-48 | -8.615850e-47 |
| Msa0175320 | Msa1332110 | 0.821550 | 3.803966e-53 | -8.615850e-47 |
| Msa1265820 | Msa1332110 | 0.814416 | 1.557577e-51 | -8.615850e-47 |
| Msa1332110 | Msa1332140 | 0.973679 | 7.731052e-137 | -8.615850e-47 |
| Msa1332110 | Msa1347290 | -0.817997 | 2.466196e-52 | -8.615850e-47 |
| Msa1332110 | Msa1367620 | 0.811819 | 5.783664e-51 | -8.615850e-47 |
| Msa1332110 | Msa1399250 | 0.856764 | 2.579321e-62 | -8.615850e-47 |
| Msa0381630 | Msa1332110 | 0.804812 | 1.804972e-49 | -8.615850e-47 |
| Msa0470870 | Msa1332110 | 0.806762 | 7.028987e-50 | -8.615850e-47 |
| Msa0989490 | Msa1332110 | 0.833941 | 3.993944e-56 | -8.615850e-47 |
| Msa1018020 | Msa1332110 | 0.834737 | 2.521595e-56 | -8.615850e-47 |
| Msa1042890 | Msa1332110 | 0.821447 | 4.018725e-53 | -8.615850e-47 |
| Msa1064210 | Msa1332110 | -0.814332 | 1.625933e-51 | -8.615850e-47 |
| Msa0258220 | Msa1332110 | 0.820229 | 7.659608e-53 | -8.615850e-47 |
| Msa1147980 | Msa1332110 | 0.815406 | 9.395245e-52 | -8.615850e-47 |
| Msa1168960 | Msa1332110 | 0.805430 | 1.339867e-49 | -8.615850e-47 |
| Msa1215000 | Msa1332110 | 0.822299 | 2.550962e-53 | -8.615850e-47 |
| Msa0589640 | Msa1332110 | -0.804720 | 1.886116e-49 | -8.615850e-47 |
| Msa0865990 | Msa1332110 | 0.842031 | 3.313444e-58 | -8.615850e-47 |
| Msa0948050 | Msa1332110 | 0.800386 | 1.476508e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332110 | MtrunA17_Chr4g0064391 | 99.450 | 545 | 3 | 0 | 1 | 545 | 1 | 545 | 0.0 | 1127 |
| Msa1332110 | MtrunA17_Chr8g0376161 | 50.171 | 584 | 227 | 13 | 4 | 545 | 2 | 563 | 6.22e-177 | 510 |
| Msa1332110 | MtrunA17_Chr4g0071851 | 47.069 | 580 | 259 | 14 | 4 | 539 | 2 | 577 | 3.04e-156 | 458 |
| Msa1332110 | MtrunA17_Chr2g0298681 | 62.975 | 316 | 104 | 2 | 4 | 307 | 2 | 316 | 7.71e-141 | 419 |
| Msa1332110 | MtrunA17_Chr2g0305391 | 40.502 | 558 | 257 | 14 | 9 | 520 | 1 | 529 | 4.62e-124 | 375 |
| Msa1332110 | MtrunA17_Chr4g0064081 | 28.311 | 604 | 341 | 14 | 7 | 530 | 4 | 595 | 2.14e-69 | 234 |
| Msa1332110 | MtrunA17_Chr2g0278681 | 30.903 | 576 | 303 | 13 | 7 | 499 | 4 | 567 | 6.84e-67 | 227 |
| Msa1332110 | MtrunA17_Chr8g0336601 | 30.399 | 602 | 325 | 20 | 5 | 527 | 2 | 588 | 2.52e-66 | 225 |
| Msa1332110 | MtrunA17_Chr3g0119631 | 34.868 | 304 | 183 | 4 | 9 | 300 | 5 | 305 | 5.84e-60 | 213 |
| Msa1332110 | MtrunA17_Chr3g0137621 | 46.053 | 152 | 79 | 2 | 5 | 155 | 2 | 151 | 3.48e-38 | 148 |
| Msa1332110 | MtrunA17_Chr3g0137621 | 28.504 | 421 | 240 | 13 | 172 | 543 | 227 | 635 | 1.37e-25 | 111 |
| Msa1332110 | MtrunA17_Chr8g0392221 | 30.225 | 311 | 197 | 8 | 9 | 303 | 5 | 311 | 8.79e-37 | 141 |
| Msa1332110 | MtrunA17_Chr6g0476971 | 25.436 | 287 | 195 | 5 | 1 | 272 | 1 | 283 | 5.82e-24 | 103 |
| Msa1332110 | MtrunA17_Chr1g0162241 | 23.962 | 313 | 215 | 11 | 10 | 310 | 8 | 309 | 1.69e-18 | 87.4 |
| Msa1332110 | MtrunA17_Chr3g0123621 | 26.316 | 323 | 207 | 13 | 6 | 315 | 2 | 306 | 8.78e-18 | 84.7 |
| Msa1332110 | MtrunA17_Chr8g0375541 | 22.830 | 311 | 206 | 13 | 9 | 301 | 4 | 298 | 5.43e-15 | 77.0 |
| Msa1332110 | MtrunA17_Chr8g0381681 | 27.230 | 213 | 137 | 7 | 5 | 207 | 2 | 206 | 3.59e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332110 | AT5G35200.1 | 68.073 | 545 | 147 | 11 | 9 | 541 | 11 | 540 | 0.0 | 716 |
| Msa1332110 | AT5G35200.2 | 68.073 | 545 | 147 | 11 | 9 | 541 | 11 | 540 | 0.0 | 716 |
| Msa1332110 | AT2G01600.1 | 48.480 | 592 | 233 | 15 | 4 | 545 | 2 | 571 | 3.76e-165 | 481 |
| Msa1332110 | AT4G25940.1 | 50.467 | 535 | 200 | 10 | 5 | 483 | 3 | 528 | 5.24e-161 | 471 |
| Msa1332110 | AT1G14910.1 | 50.487 | 513 | 206 | 11 | 4 | 483 | 2 | 499 | 1.15e-158 | 469 |
| Msa1332110 | AT1G14910.2 | 49.708 | 513 | 205 | 12 | 4 | 483 | 2 | 494 | 6.50e-153 | 454 |
| Msa1332110 | AT5G57200.1 | 64.669 | 317 | 100 | 2 | 4 | 309 | 2 | 317 | 1.39e-144 | 429 |
| Msa1332110 | AT1G03050.1 | 32.302 | 582 | 296 | 18 | 7 | 505 | 4 | 570 | 4.37e-73 | 244 |
| Msa1332110 | AT4G02650.1 | 28.293 | 615 | 350 | 13 | 7 | 542 | 4 | 606 | 1.19e-64 | 222 |
| Msa1332110 | AT4G32285.1 | 28.843 | 579 | 314 | 8 | 8 | 492 | 4 | 578 | 2.58e-63 | 219 |
| Msa1332110 | AT4G32285.2 | 28.843 | 579 | 314 | 8 | 8 | 492 | 4 | 578 | 2.58e-63 | 219 |
| Msa1332110 | AT1G05020.1 | 31.595 | 326 | 187 | 4 | 9 | 300 | 5 | 328 | 1.96e-55 | 197 |
| Msa1332110 | AT2G25430.1 | 46.980 | 149 | 76 | 2 | 8 | 155 | 4 | 150 | 5.31e-38 | 148 |
| Msa1332110 | AT2G25430.1 | 27.195 | 353 | 223 | 4 | 172 | 492 | 247 | 597 | 2.18e-24 | 107 |
| Msa1332110 | AT1G33340.1 | 24.910 | 277 | 187 | 8 | 9 | 272 | 9 | 277 | 1.06e-18 | 88.6 |
| Msa1332110 | AT1G25240.2 | 24.916 | 297 | 202 | 8 | 10 | 298 | 6 | 289 | 3.82e-17 | 84.0 |
| Msa1332110 | AT1G25240.1 | 24.916 | 297 | 202 | 8 | 10 | 298 | 5 | 288 | 4.04e-17 | 84.0 |
| Msa1332110 | AT4G40080.1 | 30.097 | 206 | 120 | 7 | 4 | 190 | 2 | 202 | 8.03e-16 | 79.7 |
| Msa1332110 | AT1G68110.1 | 22.742 | 299 | 210 | 9 | 10 | 298 | 5 | 292 | 8.21e-14 | 73.6 |
| Msa1332110 | AT2G01920.1 | 23.052 | 308 | 184 | 11 | 10 | 303 | 9 | 277 | 3.68e-11 | 65.1 |
Find 188 sgRNAs with CRISPR-Local
Find 388 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGATTTCCTTTAATGTTAA+TGG | 0.142683 | 8_4:-52008328 | None:intergenic |
| CATGAAGAACTCATTAATTA+TGG | 0.161452 | 8_4:+52010448 | Msa1332110:CDS |
| CAGCTTCTCTATCGAGTTAT+TGG | 0.162944 | 8_4:+52011024 | Msa1332110:CDS |
| ATTTGACCCATTAACATTAA+AGG | 0.167209 | 8_4:+52008321 | Msa1332110:five_prime_UTR |
| CTTGGAGTCAAGATTAAATT+TGG | 0.186318 | 8_4:-52008462 | None:intergenic |
| TCAATAGCCAAAACTTCTTT+TGG | 0.225329 | 8_4:-52012183 | None:intergenic |
| TAACCCCACCCTCCACTTAT+AGG | 0.234319 | 8_4:+52008263 | Msa1332110:five_prime_UTR |
| AACCCCACCCTCCACTTATA+GGG | 0.241438 | 8_4:+52008264 | Msa1332110:five_prime_UTR |
| ATGGATTATAGCTAGCATTT+TGG | 0.247934 | 8_4:-52013790 | None:intergenic |
| TGCTGCTCCAAAAGAAGTTT+TGG | 0.257824 | 8_4:+52012176 | Msa1332110:CDS |
| CAACAATCTGCAAATCCTTT+TGG | 0.269633 | 8_4:+52013983 | Msa1332110:CDS |
| GCACGTTCCTCCTTCACTTC+TGG | 0.277152 | 8_4:-52012219 | None:intergenic |
| CGAATGTGTTTCTCCTTAGC+TGG | 0.277512 | 8_4:-52009422 | None:intergenic |
| AATCAAAATCACGATCTATA+AGG | 0.285386 | 8_4:-52008722 | None:intergenic |
| TTCTGCAGTATCCAAATCTT+TGG | 0.307347 | 8_4:-52010974 | None:intergenic |
| TGTTCCAGCTGCTGCAGAAT+TGG | 0.309206 | 8_4:+52012453 | Msa1332110:CDS |
| TTTGGCTATTGAATACAATA+AGG | 0.318480 | 8_4:+52012194 | Msa1332110:CDS |
| ATATGCCGTAATCTTGATAT+TGG | 0.321801 | 8_4:+52011608 | Msa1332110:CDS |
| GTCATAGAGGACCAAAGATT+TGG | 0.323330 | 8_4:+52010963 | Msa1332110:intron |
| ACAACCACCACCTGATCTTT+TGG | 0.329968 | 8_4:+52012293 | Msa1332110:CDS |
| TGATTTCCTTTAATGTTAAT+GGG | 0.332386 | 8_4:-52008327 | None:intergenic |
| TAAATAGCAGATGAGGGTTT+TGG | 0.334431 | 8_4:+52014219 | Msa1332110:three_prime_UTR |
| ACCTTGAGGCCGAGAAAATT+AGG | 0.338207 | 8_4:+52008434 | Msa1332110:five_prime_UTR |
| GAAATTTGTTCCTGATGAAT+TGG | 0.339892 | 8_4:+52014329 | Msa1332110:three_prime_UTR |
| CAGTTTCCATTCCCTGTACA+TGG | 0.355094 | 8_4:+52014361 | Msa1332110:three_prime_UTR |
| TAGTGATGGAACTGTTAATA+TGG | 0.357056 | 8_4:+52011322 | Msa1332110:CDS |
| GTATATATCAAGAGCTTTCA+AGG | 0.370309 | 8_4:-52011454 | None:intergenic |
| CCAGCCGGTGCTTGCTCCCA+TGG | 0.373647 | 8_4:-52013809 | None:intergenic |
| GAGAGAGAGAAAAGAGAAAA+GGG | 0.373759 | 8_4:-52008598 | None:intergenic |
| TGGAACCGCCGGGTGGGAAT+TGG | 0.378308 | 8_4:+52013183 | Msa1332110:CDS |
| AAAAGCACTTGGAGCTCTTA+AGG | 0.379703 | 8_4:+52009225 | Msa1332110:CDS |
| GAACAGAAAATTTGTATCAT+AGG | 0.383499 | 8_4:+52014155 | Msa1332110:three_prime_UTR |
| CGAGAGAGAGAAAAGAGAAA+AGG | 0.383966 | 8_4:-52008599 | None:intergenic |
| AAACATGGATACTCCACATT+TGG | 0.384395 | 8_4:+52014116 | Msa1332110:three_prime_UTR |
| ATTAACAGTTCCATCACTAA+TGG | 0.385098 | 8_4:-52011318 | None:intergenic |
| TATGAGCTGCTTGCTTCGTT+TGG | 0.393592 | 8_4:-52008542 | None:intergenic |
| TGCTGCAGCAGCTAGCAAAT+TGG | 0.394294 | 8_4:+52013237 | Msa1332110:CDS |
| ATGAAGAACTCATTAATTAT+GGG | 0.394956 | 8_4:+52010449 | Msa1332110:CDS |
| GCTGTTTCAAATCATGCAAA+TGG | 0.395050 | 8_4:+52013163 | Msa1332110:CDS |
| TGCGTTAACAGTAACCAATC+AGG | 0.399073 | 8_4:-52014299 | None:intergenic |
| TCTTCCAATTCTGCAGCAGC+TGG | 0.400965 | 8_4:-52012457 | None:intergenic |
| ATCAAAATCACGATCTATAA+GGG | 0.403527 | 8_4:-52008721 | None:intergenic |
| TTGGCTTTAGCCATCGTTCC+CGG | 0.405036 | 8_4:+52012490 | Msa1332110:CDS |
| GATTATCAAAGACACATAAC+TGG | 0.406456 | 8_4:+52009842 | Msa1332110:CDS |
| CTTTCGAACTATTGCTCCCT+GGG | 0.408339 | 8_4:-52011810 | None:intergenic |
| AATTTCTCTCTAGCTATCTA+TGG | 0.408342 | 8_4:-52014187 | None:intergenic |
| ATACAGAAGGGTTGGGCTGC+AGG | 0.411427 | 8_4:+52011473 | Msa1332110:CDS |
| TGGTATTCAGGCTGGAGGTT+TGG | 0.422718 | 8_4:+52013718 | Msa1332110:intron |
| AACTGTTAATATGGTTGATA+AGG | 0.423678 | 8_4:+52011331 | Msa1332110:CDS |
| TTCTCAGTGCATCATCATAT+AGG | 0.427987 | 8_4:-52013760 | None:intergenic |
| GGTGGTGTTTCCACTTTCAC+AGG | 0.433455 | 8_4:-52012267 | None:intergenic |
| AATTCTGCAGCAGCTGGAAC+AGG | 0.433629 | 8_4:-52012451 | None:intergenic |
| GATACATGAAAGACTGTTGC+TGG | 0.435439 | 8_4:-52013922 | None:intergenic |
| CTATCGAGTTATTGGTTGCC+AGG | 0.437344 | 8_4:+52011032 | Msa1332110:CDS |
| TGCTCCACACTCTGTTCAAA+TGG | 0.437973 | 8_4:+52013886 | Msa1332110:CDS |
| TGGAGCAGCCATTGTATTAG+AGG | 0.443445 | 8_4:-52013870 | None:intergenic |
| ATATTGCAATTAGGTTGCTT+CGG | 0.443544 | 8_4:+52011274 | Msa1332110:intron |
| AGCTGCTTGCTTCGTTTGGT+TGG | 0.445468 | 8_4:-52008538 | None:intergenic |
| ACCGTCTGAACCTGTGAAAG+TGG | 0.453685 | 8_4:+52012257 | Msa1332110:CDS |
| CCTTTCGAACTATTGCTCCC+TGG | 0.454270 | 8_4:-52011811 | None:intergenic |
| GAAGTTCATCAAAGTTGAGC+AGG | 0.463775 | 8_4:+52011640 | Msa1332110:CDS |
| GTTACTGTTAACGCATTAGC+AGG | 0.471154 | 8_4:+52014307 | Msa1332110:three_prime_UTR |
| ACAGGTTCAGACGGTGGAGG+GGG | 0.472068 | 8_4:-52012249 | None:intergenic |
| GTTAATCCACTCGAATTAGT+TGG | 0.475229 | 8_4:-52008244 | None:intergenic |
| GAAAACAATACCAATTCATC+AGG | 0.476238 | 8_4:-52014339 | None:intergenic |
| CAGCATGGGATTATTCTGCA+TGG | 0.479621 | 8_4:+52010617 | Msa1332110:intron |
| AAAATGCTAGCTATAATCCA+TGG | 0.481886 | 8_4:+52013792 | Msa1332110:CDS |
| AGCATGGGATTATTCTGCAT+GGG | 0.485591 | 8_4:+52010618 | Msa1332110:intron |
| GCAGCACTTTCATTTGAGCT+AGG | 0.489574 | 8_4:-52013220 | None:intergenic |
| AATGAGTTCTTCATGAAATG+TGG | 0.492798 | 8_4:-52010440 | None:intergenic |
| AGCAATAGTTCGAAAGGATC+AGG | 0.493344 | 8_4:+52011817 | Msa1332110:CDS |
| GAATGTGTTTCTCCTTAGCT+GGG | 0.493431 | 8_4:-52009421 | None:intergenic |
| CTATGTCAAAGATGCTCCCC+AGG | 0.495058 | 8_4:+52011793 | Msa1332110:CDS |
| CACGTCCAATATCAAGATTA+CGG | 0.495283 | 8_4:-52011613 | None:intergenic |
| AAAGATGACTCGAGTCCAAA+TGG | 0.496856 | 8_4:+52010508 | Msa1332110:CDS |
| GGACACCACTACTGTCTCAT+TGG | 0.499844 | 8_4:+52009246 | Msa1332110:CDS |
| TCACAGGTTCAGACGGTGGA+GGG | 0.500208 | 8_4:-52012251 | None:intergenic |
| TCACCGTGCTCTGAGGGAGG+TGG | 0.500344 | 8_4:+52010414 | Msa1332110:CDS |
| TTAAATAGAACCCCTATAAG+TGG | 0.500746 | 8_4:-52008275 | None:intergenic |
| ACAGTTCACCCCTATGGCTC+AGG | 0.500843 | 8_4:+52014025 | Msa1332110:CDS |
| GTTTAGATGAGGCCTGTGTA+AGG | 0.501347 | 8_4:-52014070 | None:intergenic |
| ATCTTTGACATAGTCTTCCA+TGG | 0.501357 | 8_4:-52011783 | None:intergenic |
| AGATCAGGTGGTGGTTGTAC+TGG | 0.501522 | 8_4:-52012288 | None:intergenic |
| TAAGGATTGTATGATTGAAC+AGG | 0.502702 | 8_4:-52014052 | None:intergenic |
| CACAGGTTCAGACGGTGGAG+GGG | 0.502984 | 8_4:-52012250 | None:intergenic |
| ATGGCTTGCATAAACGATGA+TGG | 0.503236 | 8_4:-52011764 | None:intergenic |
| ACAGTAATTACCAAAAGATC+AGG | 0.504878 | 8_4:-52012303 | None:intergenic |
| AGCGAGAGCATGGATGCAAT+AGG | 0.506646 | 8_4:-52009815 | None:intergenic |
| TGTCATTCACCGTGCTCTGA+GGG | 0.508222 | 8_4:+52010408 | Msa1332110:CDS |
| CCATATTGAGGATTTCCAAA+AGG | 0.508316 | 8_4:-52013998 | None:intergenic |
| GGATTTGCAGATTGTTGTTG+AGG | 0.508477 | 8_4:-52013977 | None:intergenic |
| TAGAGAAGCTGTTGTAAAGC+TGG | 0.511890 | 8_4:-52011012 | None:intergenic |
| TGGCTTGCATAAACGATGAT+GGG | 0.513219 | 8_4:-52011763 | None:intergenic |
| TTGATATATACAGAAGGGTT+GGG | 0.514045 | 8_4:+52011466 | Msa1332110:CDS |
| ATATACTTCCCACCATGTAC+AGG | 0.516614 | 8_4:-52014373 | None:intergenic |
| GGAGCCACAGTTCACCCCTA+TGG | 0.518635 | 8_4:+52014019 | Msa1332110:CDS |
| CGATCTCAGCTACAAGACCT+AGG | 0.519172 | 8_4:+52009782 | Msa1332110:CDS |
| AATCATGCAAATGGAACCGC+CGG | 0.520111 | 8_4:+52013172 | Msa1332110:CDS |
| CTTGATATATACAGAAGGGT+TGG | 0.523281 | 8_4:+52011465 | Msa1332110:CDS |
| TCCACATTTGGTTGTATGCG+TGG | 0.523620 | 8_4:+52014128 | Msa1332110:three_prime_UTR |
| CAAATTTAATCTTGACTCCA+AGG | 0.524488 | 8_4:+52008463 | Msa1332110:five_prime_UTR |
| TGCTTCGTTTGGTTGGTCGT+CGG | 0.525049 | 8_4:-52008531 | None:intergenic |
| TAAGGTCAACAGTGGTTACA+AGG | 0.525222 | 8_4:+52009270 | Msa1332110:CDS |
| GATTCAGTTAGCACTCCAAT+TGG | 0.526089 | 8_4:+52011182 | Msa1332110:CDS |
| TGTGAGAGGGAGAATATGTC+TGG | 0.529556 | 8_4:+52009181 | Msa1332110:exon |
| TTCCCACCATGTACAGGGAA+TGG | 0.533479 | 8_4:-52014367 | None:intergenic |
| ATTGCATCCATGCTCTCGCT+AGG | 0.535134 | 8_4:+52009818 | Msa1332110:CDS |
| TGAACTGTGGCTCCATATTG+AGG | 0.535591 | 8_4:-52014010 | None:intergenic |
| ATTTATCAAGCCATTAGTGA+TGG | 0.536222 | 8_4:+52011308 | Msa1332110:CDS |
| GGTTGCATCATGCCTCCAGC+CGG | 0.537046 | 8_4:-52013824 | None:intergenic |
| AACCCCTATAAGTGGAGGGT+GGG | 0.538439 | 8_4:-52008267 | None:intergenic |
| TAATCCATGGGAGCAAGCAC+CGG | 0.538808 | 8_4:+52013805 | Msa1332110:CDS |
| TTTAATCTTGACTCCAAGGA+AGG | 0.541160 | 8_4:+52008467 | Msa1332110:five_prime_UTR |
| TCATGTTGAACGCCCAGCTA+AGG | 0.541327 | 8_4:+52009409 | Msa1332110:CDS |
| TTCACAGGTTCAGACGGTGG+AGG | 0.541839 | 8_4:-52012252 | None:intergenic |
| CAATAGGCAACGTCAGCCCT+AGG | 0.542438 | 8_4:-52009799 | None:intergenic |
| CTATTTGGTATTCAGGCTGG+AGG | 0.543661 | 8_4:+52013713 | Msa1332110:intron |
| GATTTGCAGATTGTTGTTGA+GGG | 0.546331 | 8_4:-52013976 | None:intergenic |
| ACCCCTATAAGTGGAGGGTG+GGG | 0.554611 | 8_4:-52008266 | None:intergenic |
| AACAGGCATACCTGAGCCAT+AGG | 0.555181 | 8_4:-52014035 | None:intergenic |
| CCTCATCTAAACATTTCTTG+TGG | 0.555267 | 8_4:+52014081 | Msa1332110:exon |
| TTCCATTCCCTGTACATGGT+GGG | 0.556286 | 8_4:+52014365 | Msa1332110:three_prime_UTR |
| TTTGAATAAATAGCAGATGA+GGG | 0.556478 | 8_4:+52014213 | Msa1332110:three_prime_UTR |
| ATGAGTTCTTCATGAAATGT+GGG | 0.558036 | 8_4:-52010439 | None:intergenic |
| CAATAAGGAACCAGAAGTGA+AGG | 0.558157 | 8_4:+52012209 | Msa1332110:CDS |
| CACTACTGTCTCATTGGCTA+AGG | 0.558365 | 8_4:+52009252 | Msa1332110:CDS |
| CCACATTTGGTTGTATGCGT+GGG | 0.558414 | 8_4:+52014129 | Msa1332110:three_prime_UTR |
| GCAGCAACAAATGATGATGA+TGG | 0.566303 | 8_4:+52013952 | Msa1332110:CDS |
| TCCACTTTCACAGGTTCAGA+CGG | 0.567213 | 8_4:-52012258 | None:intergenic |
| ATTGGAAGAGAAGAATGCCT+TGG | 0.567227 | 8_4:+52012471 | Msa1332110:CDS |
| CGTAATCTTGATATTGGACG+TGG | 0.570140 | 8_4:+52011614 | Msa1332110:CDS |
| GCATGATTTGAAACAGCAGA+AGG | 0.573496 | 8_4:-52013157 | None:intergenic |
| GCGTTAACAGTAACCAATCA+GGG | 0.577375 | 8_4:-52014298 | None:intergenic |
| TGCAAATGGAACCGCCGGGT+GGG | 0.578453 | 8_4:+52013177 | Msa1332110:CDS |
| ACCCCACCCTCCACTTATAG+GGG | 0.580420 | 8_4:+52008265 | Msa1332110:five_prime_UTR |
| AACAGTTTGAGAAAAGCACT+TGG | 0.582322 | 8_4:+52009214 | Msa1332110:CDS |
| CAGAAAATTACCGGGAACGA+TGG | 0.585889 | 8_4:-52012500 | None:intergenic |
| CCCACGCATACAACCAAATG+TGG | 0.588826 | 8_4:-52014129 | None:intergenic |
| AAGCTCTTGATATATACAGA+AGG | 0.592487 | 8_4:+52011460 | Msa1332110:CDS |
| CCACAAGAAATGTTTAGATG+AGG | 0.593524 | 8_4:-52014081 | None:intergenic |
| TTATTTACAGCTGCTCCTTG+TGG | 0.595184 | 8_4:-52011153 | None:intergenic |
| AACTGAGTAACTTTAGTGCA+AGG | 0.595650 | 8_4:+52014453 | Msa1332110:three_prime_UTR |
| CCAGGGAGCAATAGTTCGAA+AGG | 0.596084 | 8_4:+52011811 | Msa1332110:CDS |
| ATCATCGTTTATGCAAGCCA+TGG | 0.597268 | 8_4:+52011766 | Msa1332110:CDS |
| GGCTTGCATAAACGATGATG+GGG | 0.600480 | 8_4:-52011762 | None:intergenic |
| ACAGGCATACCTGAGCCATA+GGG | 0.603728 | 8_4:-52014034 | None:intergenic |
| GATCCACCTCCCTCAGAGCA+CGG | 0.603781 | 8_4:-52010417 | None:intergenic |
| ATTTGCAGATTGTTGTTGAG+GGG | 0.604944 | 8_4:-52013975 | None:intergenic |
| TTGTCATTCACCGTGCTCTG+AGG | 0.605568 | 8_4:+52010407 | Msa1332110:CDS |
| AATAGAACCCCTATAAGTGG+AGG | 0.606033 | 8_4:-52008272 | None:intergenic |
| TTTCCATTCCCTGTACATGG+TGG | 0.607391 | 8_4:+52014364 | Msa1332110:three_prime_UTR |
| TCAGGTGGTGGTTGTACTGG+TGG | 0.607883 | 8_4:-52012285 | None:intergenic |
| TAAGAACCAACTAATTCGAG+TGG | 0.609942 | 8_4:+52008238 | Msa1332110:five_prime_UTR |
| GCTAAGGAGAAACACATTCG+AGG | 0.614196 | 8_4:+52009425 | Msa1332110:CDS |
| ATGCAAATGGAACCGCCGGG+TGG | 0.616410 | 8_4:+52013176 | Msa1332110:CDS |
| ACTTTCACAGGTTCAGACGG+TGG | 0.618055 | 8_4:-52012255 | None:intergenic |
| AACAAGAGCCAATTCCCACC+CGG | 0.618163 | 8_4:-52013191 | None:intergenic |
| GATCTCAGCTACAAGACCTA+GGG | 0.619658 | 8_4:+52009783 | Msa1332110:CDS |
| TTTCGTATGCTGCAGCCACA+AGG | 0.624793 | 8_4:+52011138 | Msa1332110:intron |
| GAACCCCTATAAGTGGAGGG+TGG | 0.625042 | 8_4:-52008268 | None:intergenic |
| AAATGCTAGCTATAATCCAT+GGG | 0.626464 | 8_4:+52013793 | Msa1332110:CDS |
| CATTCACCGTGCTCTGAGGG+AGG | 0.628270 | 8_4:+52010411 | Msa1332110:CDS |
| CAGGCATACCTGAGCCATAG+GGG | 0.630660 | 8_4:-52014033 | None:intergenic |
| ATTACCAAAAGATCAGGTGG+TGG | 0.630927 | 8_4:-52012297 | None:intergenic |
| AGCTCTTGATATATACAGAA+GGG | 0.631545 | 8_4:+52011461 | Msa1332110:CDS |
| AAAATCACGATCTATAAGGG+TGG | 0.637634 | 8_4:-52008718 | None:intergenic |
| GCTGCCATTTGAACAGAGTG+TGG | 0.639866 | 8_4:-52013890 | None:intergenic |
| TATACTTCCCACCATGTACA+GGG | 0.640986 | 8_4:-52014372 | None:intergenic |
| GGGAACGATGGCTAAAGCCA+AGG | 0.647252 | 8_4:-52012488 | None:intergenic |
| GTAATTACCAAAAGATCAGG+TGG | 0.648044 | 8_4:-52012300 | None:intergenic |
| ATAGAACCCCTATAAGTGGA+GGG | 0.648619 | 8_4:-52008271 | None:intergenic |
| TAAGGAACCAGAAGTGAAGG+AGG | 0.654919 | 8_4:+52012212 | Msa1332110:CDS |
| TATGTTGAAGAAAGAAGACG+AGG | 0.656711 | 8_4:-52008772 | None:intergenic |
| CAATCATACAATCCTTACAC+AGG | 0.659165 | 8_4:+52014058 | Msa1332110:CDS |
| CTTAGCCAATGAGACAGTAG+TGG | 0.664093 | 8_4:-52009251 | None:intergenic |
| TCTAGCTATCTATGGCACAC+AGG | 0.669382 | 8_4:-52014179 | None:intergenic |
| TAGAAGTCATATGCTCAACA+TGG | 0.670556 | 8_4:+52010477 | Msa1332110:CDS |
| TATGTCAAAGATGCTCCCCA+GGG | 0.677197 | 8_4:+52011794 | Msa1332110:CDS |
| ATCATGCAAATGGAACCGCC+GGG | 0.680652 | 8_4:+52013173 | Msa1332110:CDS |
| AAATCGAACCTAAAACCTTG+AGG | 0.689183 | 8_4:+52008420 | Msa1332110:five_prime_UTR |
| TGTGTTGAAGTATGACATTG+AGG | 0.694540 | 8_4:+52010687 | Msa1332110:CDS |
| ATTATCAAAGACACATAACT+GGG | 0.698534 | 8_4:+52009843 | Msa1332110:CDS |
| TTTCGAACTATTGCTCCCTG+GGG | 0.700129 | 8_4:-52011809 | None:intergenic |
| GAGAGGGAGAATATGTCTGG+TGG | 0.700785 | 8_4:+52009184 | Msa1332110:exon |
| TCATTGGCTAAGGTCAACAG+TGG | 0.721103 | 8_4:+52009262 | Msa1332110:CDS |
| GCTTGCATAAACGATGATGG+GGG | 0.721996 | 8_4:-52011761 | None:intergenic |
| TGAGCCATAGGGGTGAACTG+TGG | 0.722937 | 8_4:-52014023 | None:intergenic |
| AAGAGCCAATTCCCACCCGG+CGG | 0.752299 | 8_4:-52013188 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTAATGTTTTTTTTTTT+TGG | - | chr8_4:52008400-52008419 | None:intergenic | 10.0% |
| !!! | ATTAAATGTATTTTTTTAGT+TGG | + | chr8_4:52009020-52009039 | Msa1332110:intron | 10.0% |
| !!! | TCAATGATTTTTTTTTTTTT+TGG | + | chr8_4:52009133-52009152 | Msa1332110:intron | 10.0% |
| !! | ATAAAATAATTGAAAAGAAT+TGG | - | chr8_4:52011697-52011716 | None:intergenic | 10.0% |
| !!! | TGTTTTAGATTAAAATAAAA+TGG | - | chr8_4:52012138-52012157 | None:intergenic | 10.0% |
| !!! | ATTTTATTTTAATCTAAAAC+AGG | + | chr8_4:52012137-52012156 | Msa1332110:intron | 10.0% |
| !! | AAATAATTAACAATAGTAAT+TGG | + | chr8_4:52012579-52012598 | Msa1332110:intron | 10.0% |
| !!! | TGGTTATTTTATTTTATTGT+CGG | + | chr8_4:52008995-52009014 | Msa1332110:intron | 15.0% |
| !!! | GTTTTTATTCCATATAAAAA+AGG | - | chr8_4:52009898-52009917 | None:intergenic | 15.0% |
| !! | TTCATTAAATTCAAAAAAGT+TGG | - | chr8_4:52011070-52011089 | None:intergenic | 15.0% |
| !! | AAACAAACAAAAATTAAGTA+TGG | - | chr8_4:52011224-52011243 | None:intergenic | 15.0% |
| !!! | CTTTAAAAATATTTACTAAC+TGG | + | chr8_4:52012107-52012126 | Msa1332110:intron | 15.0% |
| !!! | AGTAATAATAAATTTGCTAA+TGG | - | chr8_4:52012879-52012898 | None:intergenic | 15.0% |
| !!! | ACTAATACTTTTAATATTAG+AGG | + | chr8_4:52012958-52012977 | Msa1332110:intron | 15.0% |
| !!! | TATATGATTTTTTATGTACA+AGG | + | chr8_4:52014243-52014262 | Msa1332110:three_prime_UTR | 15.0% |
| !! | TGATTTCCTTTAATGTTAAT+GGG | - | chr8_4:52008330-52008349 | None:intergenic | 20.0% |
| !! | TGTATTTGATCTTATCAAAT+TGG | + | chr8_4:52009339-52009358 | Msa1332110:intron | 20.0% |
| !!! | AAATTGGTTTATTGTTTTGT+AGG | + | chr8_4:52009355-52009374 | Msa1332110:intron | 20.0% |
| !! | AAAACACAAATCATAAAAGA+GGG | - | chr8_4:52009464-52009483 | None:intergenic | 20.0% |
| !! | AAAAACACAAATCATAAAAG+AGG | - | chr8_4:52009465-52009484 | None:intergenic | 20.0% |
| !!! | CTTTTATGATTTGTGTTTTT+TGG | + | chr8_4:52009465-52009484 | Msa1332110:intron | 20.0% |
| !! | ATATTTATAGATTGTATACG+AGG | + | chr8_4:52009689-52009708 | Msa1332110:intron | 20.0% |
| !! | TATTTATAGATTGTATACGA+GGG | + | chr8_4:52009690-52009709 | Msa1332110:intron | 20.0% |
| !!! | AGATCTTATCCTTTTTTATA+TGG | + | chr8_4:52009886-52009905 | Msa1332110:intron | 20.0% |
| !! | ATGAAGAACTCATTAATTAT+GGG | + | chr8_4:52010449-52010468 | Msa1332110:CDS | 20.0% |
| !! | TTTATAACAAGATCAATGAT+GGG | - | chr8_4:52010548-52010567 | None:intergenic | 20.0% |
| !! | ATTTATAACAAGATCAATGA+TGG | - | chr8_4:52010549-52010568 | None:intergenic | 20.0% |
| !! | CATTAAGTTTATAATCTTAC+AGG | - | chr8_4:52010721-52010740 | None:intergenic | 20.0% |
| !! | AATATAAGGTATATTCAGAA+AGG | - | chr8_4:52011259-52011278 | None:intergenic | 20.0% |
| !! | ATATACCTTATATTGCAATT+AGG | + | chr8_4:52011265-52011284 | Msa1332110:intron | 20.0% |
| !!! | TAATTACTGTGTTTTTCTTT+TGG | + | chr8_4:52012316-52012335 | Msa1332110:intron | 20.0% |
| !! | TGATTAATGAGAGAAAAATT+GGG | - | chr8_4:52012758-52012777 | None:intergenic | 20.0% |
| !! | ATGATTAATGAGAGAAAAAT+TGG | - | chr8_4:52012759-52012778 | None:intergenic | 20.0% |
| !! | ACATGCATTTATTAATGAAT+AGG | + | chr8_4:52012829-52012848 | Msa1332110:intron | 20.0% |
| !! | CATGCATTTATTAATGAATA+GGG | + | chr8_4:52012830-52012849 | Msa1332110:intron | 20.0% |
| !! | ATATTAAACAACTGCTAATT+TGG | + | chr8_4:52012920-52012939 | Msa1332110:intron | 20.0% |
| !! | TGAAATTAAATATCATGTCT+TGG | + | chr8_4:52013085-52013104 | Msa1332110:intron | 20.0% |
| !! | TGAATACATTTATAATCGAA+GGG | - | chr8_4:52013392-52013411 | None:intergenic | 20.0% |
| !! | TTGAATACATTTATAATCGA+AGG | - | chr8_4:52013393-52013412 | None:intergenic | 20.0% |
| !! | AGGGATATATTATTTGAAAA+AGG | + | chr8_4:52013455-52013474 | Msa1332110:intron | 20.0% |
| !! | TTGAATGATCCTTATAAATA+GGG | + | chr8_4:52013535-52013554 | Msa1332110:intron | 20.0% |
| ! | ATTTGACCCATTAACATTAA+AGG | + | chr8_4:52008321-52008340 | Msa1332110:five_prime_UTR | 25.0% |
| ! | GTGATTTCCTTTAATGTTAA+TGG | - | chr8_4:52008331-52008350 | None:intergenic | 25.0% |
| !!! | TTTTTTGGTCTTAGAAGAAA+TGG | - | chr8_4:52008385-52008404 | None:intergenic | 25.0% |
| !!! | ATTTTATTTTCTTCCTTCCT+TGG | - | chr8_4:52008483-52008502 | None:intergenic | 25.0% |
| ! | ATCAAAATCACGATCTATAA+GGG | - | chr8_4:52008724-52008743 | None:intergenic | 25.0% |
| ! | AATCAAAATCACGATCTATA+AGG | - | chr8_4:52008725-52008744 | None:intergenic | 25.0% |
| ! | AACAAGAAGAAGAAAAAAAG+AGG | - | chr8_4:52008868-52008887 | None:intergenic | 25.0% |
| ! | AAATAAAATAACCAGCAACA+AGG | - | chr8_4:52008989-52009008 | None:intergenic | 25.0% |
| !!! | TTGAAGTTGATAATTACGTT+TGG | - | chr8_4:52009064-52009083 | None:intergenic | 25.0% |
| ! | AATCATTGACAAATCAAAGA+TGG | - | chr8_4:52009122-52009141 | None:intergenic | 25.0% |
| !!! | TTTTTTGGTTGAGTTTTTTC+AGG | + | chr8_4:52009148-52009167 | Msa1332110:intron | 25.0% |
| !!! | TTCTTTGGAGTTAATCTTAA+CGG | + | chr8_4:52009512-52009531 | Msa1332110:intron | 25.0% |
| ! | AAGAGAACACATAAATACTT+GGG | - | chr8_4:52009744-52009763 | None:intergenic | 25.0% |
| ! | ATTATCAAAGACACATAACT+GGG | + | chr8_4:52009843-52009862 | Msa1332110:CDS | 25.0% |
| ! | AAGTCATTTAGTGAATACAT+TGG | - | chr8_4:52009924-52009943 | None:intergenic | 25.0% |
| ! | AATGTATTCACTAAATGACT+TGG | + | chr8_4:52009923-52009942 | Msa1332110:intron | 25.0% |
| ! | ACCTTAAAGTCAAATAAAAG+TGG | + | chr8_4:52010078-52010097 | Msa1332110:intron | 25.0% |
| ! | CCTTAAAGTCAAATAAAAGT+GGG | + | chr8_4:52010079-52010098 | Msa1332110:intron | 25.0% |
| ! | TGTTTCTTGGTATTTAAACA+AGG | - | chr8_4:52010218-52010237 | None:intergenic | 25.0% |
| ! | TATGTACTGCAATGTTTATA+TGG | + | chr8_4:52010238-52010257 | Msa1332110:intron | 25.0% |
| ! | AGTCAATAAACCAAATAGAA+TGG | - | chr8_4:52010351-52010370 | None:intergenic | 25.0% |
| ! | CATGAAGAACTCATTAATTA+TGG | + | chr8_4:52010448-52010467 | Msa1332110:CDS | 25.0% |
| ! | TTATAACAAGATCAATGATG+GGG | - | chr8_4:52010547-52010566 | None:intergenic | 25.0% |
| ! | TACTAGTATGATATTACCAT+CGG | - | chr8_4:52010858-52010877 | None:intergenic | 25.0% |
| !! | AACTGTTAATATGGTTGATA+AGG | + | chr8_4:52011331-52011350 | Msa1332110:CDS | 25.0% |
| ! | CAATAGTCTCATATATACAT+CGG | - | chr8_4:52011395-52011414 | None:intergenic | 25.0% |
| ! | GTGAATTTAATAATAGAGAG+AGG | - | chr8_4:52011519-52011538 | None:intergenic | 25.0% |
| ! | ATCCTGAAATTTATGTTCTA+AGG | + | chr8_4:52011540-52011559 | Msa1332110:intron | 25.0% |
| ! | GTATCTAATAAAACAACTAG+TGG | + | chr8_4:52011906-52011925 | Msa1332110:intron | 25.0% |
| ! | TACACGGTAATATTAGTATT+TGG | + | chr8_4:52011931-52011950 | Msa1332110:intron | 25.0% |
| ! | ACACGGTAATATTAGTATTT+GGG | + | chr8_4:52011932-52011951 | Msa1332110:intron | 25.0% |
| ! | TTTGGCTATTGAATACAATA+AGG | + | chr8_4:52012194-52012213 | Msa1332110:CDS | 25.0% |
| ! | GGTAATTAATACCAAAAACA+GGG | - | chr8_4:52012344-52012363 | None:intergenic | 25.0% |
| !!! | TTTTTGGTATTAATTACCGA+TGG | + | chr8_4:52012346-52012365 | Msa1332110:intron | 25.0% |
| !! | TTTTGAATGTGCAAATTAAC+TGG | - | chr8_4:52012561-52012580 | None:intergenic | 25.0% |
| ! | TGACAAAGTAACATTTAGTT+TGG | - | chr8_4:52012712-52012731 | None:intergenic | 25.0% |
| ! | GGAAGAAATTAATGATGTAT+TGG | - | chr8_4:52012737-52012756 | None:intergenic | 25.0% |
| !!! | AATAAATTTGCTAATGGACA+TGG | - | chr8_4:52012873-52012892 | None:intergenic | 25.0% |
| !! | TTCTATTTTCTGCATTTTGT+TGG | + | chr8_4:52013017-52013036 | Msa1332110:intron | 25.0% |
| ! | ATACAATCTCTTGTAAATGT+TGG | + | chr8_4:52013117-52013136 | Msa1332110:intron | 25.0% |
| ! | GACTTATAAAAAGATACCAA+TGG | - | chr8_4:52013284-52013303 | None:intergenic | 25.0% |
| ! | TGATATACGTATGTGAAAAT+TGG | - | chr8_4:52013312-52013331 | None:intergenic | 25.0% |
| ! | CTATTTATAAGGATCATTCA+AGG | - | chr8_4:52013536-52013555 | None:intergenic | 25.0% |
| ! | CTTGAATGATCCTTATAAAT+AGG | + | chr8_4:52013534-52013553 | Msa1332110:intron | 25.0% |
| ! | TTATTAGCACATATGATTTG+TGG | + | chr8_4:52013589-52013608 | Msa1332110:intron | 25.0% |
| ! | ATTGTATTAGAGGCAAAAAA+TGG | - | chr8_4:52013863-52013882 | None:intergenic | 25.0% |
| !!! | ATTTTTTGCCTCTAATACAA+TGG | + | chr8_4:52013862-52013881 | Msa1332110:CDS | 25.0% |
| ! | GAACAGAAAATTTGTATCAT+AGG | + | chr8_4:52014155-52014174 | Msa1332110:three_prime_UTR | 25.0% |
| !! | TTTTGAATAAATAGCAGATG+AGG | + | chr8_4:52014212-52014231 | Msa1332110:three_prime_UTR | 25.0% |
| ! | TTTGAATAAATAGCAGATGA+GGG | + | chr8_4:52014213-52014232 | Msa1332110:three_prime_UTR | 25.0% |
| !! | GACTTGACATATATTTTCAT+TGG | - | chr8_4:52014429-52014448 | None:intergenic | 25.0% |
| TTAAATAGAACCCCTATAAG+TGG | - | chr8_4:52008278-52008297 | None:intergenic | 30.0% | |
| ! | ATGTGTGAGTTTAATTTCAG+TGG | + | chr8_4:52008355-52008374 | Msa1332110:intron | 30.0% |
| CTTGGAGTCAAGATTAAATT+TGG | - | chr8_4:52008465-52008484 | None:intergenic | 30.0% | |
| CAAATTTAATCTTGACTCCA+AGG | + | chr8_4:52008463-52008482 | Msa1332110:five_prime_UTR | 30.0% | |
| ! | TTTTATTCATACCTTGTTGC+TGG | + | chr8_4:52008975-52008994 | Msa1332110:intron | 30.0% |
| !!! | GTTGAGTTTTTTCAGGATTT+TGG | + | chr8_4:52009155-52009174 | Msa1332110:intron | 30.0% |
| CATTTCCACATAAACTTTGT+TGG | + | chr8_4:52009304-52009323 | Msa1332110:intron | 30.0% | |
| TACAACCAACAAAGTTTATG+TGG | - | chr8_4:52009312-52009331 | None:intergenic | 30.0% | |
| !! | GTTTATTGTTTTGTAGGAGT+TGG | + | chr8_4:52009361-52009380 | Msa1332110:intron | 30.0% |
| CAAAGAAGCAATCAAACATT+TGG | - | chr8_4:52009499-52009518 | None:intergenic | 30.0% | |
| CAAATGTTTGATTGCTTCTT+TGG | + | chr8_4:52009497-52009516 | Msa1332110:intron | 30.0% | |
| !! | TCTTTGGAGTTAATCTTAAC+GGG | + | chr8_4:52009513-52009532 | Msa1332110:intron | 30.0% |
| GAAGAGAACACATAAATACT+TGG | - | chr8_4:52009745-52009764 | None:intergenic | 30.0% | |
| GATTATCAAAGACACATAAC+TGG | + | chr8_4:52009842-52009861 | Msa1332110:CDS | 30.0% | |
| !! | CCCACTTTTATTTGACTTTA+AGG | - | chr8_4:52010082-52010101 | None:intergenic | 30.0% |
| TTGCATGTGTGATGAATAAA+CGG | - | chr8_4:52010178-52010197 | None:intergenic | 30.0% | |
| ATTGCAGTACATATGTTTCT+TGG | - | chr8_4:52010231-52010250 | None:intergenic | 30.0% | |
| !! | TGTTTTTGTGCCATTCTATT+TGG | + | chr8_4:52010338-52010357 | Msa1332110:intron | 30.0% |
| ! | CTATTTGGTTTATTGACTAG+TGG | + | chr8_4:52010353-52010372 | Msa1332110:intron | 30.0% |
| !!! | TGACTAGTGGTTTTATCTAT+AGG | + | chr8_4:52010366-52010385 | Msa1332110:intron | 30.0% |
| ATGAGTTCTTCATGAAATGT+GGG | - | chr8_4:52010442-52010461 | None:intergenic | 30.0% | |
| AATGAGTTCTTCATGAAATG+TGG | - | chr8_4:52010443-52010462 | None:intergenic | 30.0% | |
| ! | TCGCAGTTATGCATTATTTT+TGG | + | chr8_4:52010642-52010661 | Msa1332110:CDS | 30.0% |
| !!! | CAGTTATGCATTATTTTTGG+AGG | + | chr8_4:52010645-52010664 | Msa1332110:CDS | 30.0% |
| !!! | ATGCATTATTTTTGGAGGAA+AGG | + | chr8_4:52010650-52010669 | Msa1332110:CDS | 30.0% |
| ATTATGTGAATGTTATCCGA+TGG | + | chr8_4:52010839-52010858 | Msa1332110:intron | 30.0% | |
| GATGGTAATATCATACTAGT+AGG | + | chr8_4:52010857-52010876 | Msa1332110:intron | 30.0% | |
| TCATGCATGTTCTTTGAATA+AGG | + | chr8_4:52010917-52010936 | Msa1332110:intron | 30.0% | |
| TCTATGACAAAGTTCACAAT+TGG | - | chr8_4:52010951-52010970 | None:intergenic | 30.0% | |
| AATTGTGAACTTTGTCATAG+AGG | + | chr8_4:52010950-52010969 | Msa1332110:intron | 30.0% | |
| TAGTACAATATTAATGCTGC+TGG | - | chr8_4:52011107-52011126 | None:intergenic | 30.0% | |
| TAAATAAGTGACCTACCAAT+TGG | - | chr8_4:52011200-52011219 | None:intergenic | 30.0% | |
| AGCAACCTAATTGCAATATA+AGG | - | chr8_4:52011273-52011292 | None:intergenic | 30.0% | |
| ! | ATATTGCAATTAGGTTGCTT+CGG | + | chr8_4:52011274-52011293 | Msa1332110:intron | 30.0% |
| ATTTATCAAGCCATTAGTGA+TGG | + | chr8_4:52011308-52011327 | Msa1332110:CDS | 30.0% | |
| ATTAACAGTTCCATCACTAA+TGG | - | chr8_4:52011321-52011340 | None:intergenic | 30.0% | |
| ! | TAGTGATGGAACTGTTAATA+TGG | + | chr8_4:52011322-52011341 | Msa1332110:CDS | 30.0% |
| GTATATATCAAGAGCTTTCA+AGG | - | chr8_4:52011457-52011476 | None:intergenic | 30.0% | |
| AAGCTCTTGATATATACAGA+AGG | + | chr8_4:52011460-52011479 | Msa1332110:CDS | 30.0% | |
| AGCTCTTGATATATACAGAA+GGG | + | chr8_4:52011461-52011480 | Msa1332110:CDS | 30.0% | |
| TTGATATATACAGAAGGGTT+GGG | + | chr8_4:52011466-52011485 | Msa1332110:CDS | 30.0% | |
| CACCTTAGAACATAAATTTC+AGG | - | chr8_4:52011545-52011564 | None:intergenic | 30.0% | |
| !! | ATGTTCTAAGGTGCTTTATT+TGG | + | chr8_4:52011552-52011571 | Msa1332110:intron | 30.0% |
| !! | TGTTCTAAGGTGCTTTATTT+GGG | + | chr8_4:52011553-52011572 | Msa1332110:intron | 30.0% |
| ATATGCCGTAATCTTGATAT+TGG | + | chr8_4:52011608-52011627 | Msa1332110:CDS | 30.0% | |
| !! | AAAACAACTAGTGGATTACA+CGG | + | chr8_4:52011915-52011934 | Msa1332110:intron | 30.0% |
| CACGGTAATATTAGTATTTG+GGG | + | chr8_4:52011933-52011952 | Msa1332110:intron | 30.0% | |
| ! | TCAATAGCCAAAACTTCTTT+TGG | - | chr8_4:52012186-52012205 | None:intergenic | 30.0% |
| ACAGTAATTACCAAAAGATC+AGG | - | chr8_4:52012306-52012325 | None:intergenic | 30.0% | |
| CGGTAATTAATACCAAAAAC+AGG | - | chr8_4:52012345-52012364 | None:intergenic | 30.0% | |
| TTCTAGTAGGCAAATCAAAA+TGG | - | chr8_4:52012421-52012440 | None:intergenic | 30.0% | |
| !! | TTGATTTGCCTACTAGAATA+TGG | + | chr8_4:52012423-52012442 | Msa1332110:intron | 30.0% |
| AACAATAGTAATTGGATCGT+TGG | + | chr8_4:52012587-52012606 | Msa1332110:intron | 30.0% | |
| ACAATAGTAATTGGATCGTT+GGG | + | chr8_4:52012588-52012607 | Msa1332110:intron | 30.0% | |
| CGCAAAAACGACTATTAATT+TGG | - | chr8_4:52012676-52012695 | None:intergenic | 30.0% | |
| AAACAACTGCTAATTTGGAA+TGG | + | chr8_4:52012925-52012944 | Msa1332110:intron | 30.0% | |
| CAGAAAATAGAAAATGATGC+TGG | - | chr8_4:52013009-52013028 | None:intergenic | 30.0% | |
| !! | ACAGTTTAGTAGTGTTGATT+AGG | + | chr8_4:52013435-52013454 | Msa1332110:intron | 30.0% |
| !! | CAGTTTAGTAGTGTTGATTA+GGG | + | chr8_4:52013436-52013455 | Msa1332110:intron | 30.0% |
| ATGATCCTTATAAATAGGGA+TGG | + | chr8_4:52013539-52013558 | Msa1332110:intron | 30.0% | |
| TAGATGCATACACAAATTGA+GGG | - | chr8_4:52013627-52013646 | None:intergenic | 30.0% | |
| TTAGATGCATACACAAATTG+AGG | - | chr8_4:52013628-52013647 | None:intergenic | 30.0% | |
| AATAAGTGAGATGACCTATT+TGG | + | chr8_4:52013698-52013717 | Msa1332110:intron | 30.0% | |
| !! | ATGGATTATAGCTAGCATTT+TGG | - | chr8_4:52013793-52013812 | None:intergenic | 30.0% |
| AAAATGCTAGCTATAATCCA+TGG | + | chr8_4:52013792-52013811 | Msa1332110:CDS | 30.0% | |
| AAATGCTAGCTATAATCCAT+GGG | + | chr8_4:52013793-52013812 | Msa1332110:CDS | 30.0% | |
| TAAGGATTGTATGATTGAAC+AGG | - | chr8_4:52014055-52014074 | None:intergenic | 30.0% | |
| TGGATAAAGAGCAAAAAACA+TGG | + | chr8_4:52014101-52014120 | Msa1332110:three_prime_UTR | 30.0% | |
| AATTTCTCTCTAGCTATCTA+TGG | - | chr8_4:52014190-52014209 | None:intergenic | 30.0% | |
| ! | GAATTTCTTTTATCCCTGAT+TGG | + | chr8_4:52014285-52014304 | Msa1332110:three_prime_UTR | 30.0% |
| ! | GAAATTTGTTCCTGATGAAT+TGG | + | chr8_4:52014329-52014348 | Msa1332110:three_prime_UTR | 30.0% |
| GAAAACAATACCAATTCATC+AGG | - | chr8_4:52014342-52014361 | None:intergenic | 30.0% | |
| TAAGAACCAACTAATTCGAG+TGG | + | chr8_4:52008238-52008257 | Msa1332110:five_prime_UTR | 35.0% | |
| GTTAATCCACTCGAATTAGT+TGG | - | chr8_4:52008247-52008266 | None:intergenic | 35.0% | |
| AAATCGAACCTAAAACCTTG+AGG | + | chr8_4:52008420-52008439 | Msa1332110:five_prime_UTR | 35.0% | |
| !! | TTGGTTCGTCCTAATTTTCT+CGG | - | chr8_4:52008446-52008465 | None:intergenic | 35.0% |
| TTTAATCTTGACTCCAAGGA+AGG | + | chr8_4:52008467-52008486 | Msa1332110:five_prime_UTR | 35.0% | |
| GAGAGAGAGAAAAGAGAAAA+GGG | - | chr8_4:52008601-52008620 | None:intergenic | 35.0% | |
| AAAATCACGATCTATAAGGG+TGG | - | chr8_4:52008721-52008740 | None:intergenic | 35.0% | |
| TATGTTGAAGAAAGAAGACG+AGG | - | chr8_4:52008775-52008794 | None:intergenic | 35.0% | |
| !!! | AGGATTTTGGAATTGTGAGA+GGG | + | chr8_4:52009168-52009187 | Msa1332110:intron | 35.0% |
| !! | AACAGTTTGAGAAAAGCACT+TGG | + | chr8_4:52009214-52009233 | Msa1332110:CDS | 35.0% |
| ACAAACAAATCGATGACGTA+GGG | - | chr8_4:52009555-52009574 | None:intergenic | 35.0% | |
| ATTGTATACGAGGGAATTGT+TGG | + | chr8_4:52009699-52009718 | Msa1332110:intron | 35.0% | |
| ACCTTGGCAAGAAAGAATAT+AGG | - | chr8_4:52009986-52010005 | None:intergenic | 35.0% | |
| ATGCAATGTTTCATCAACCT+TGG | - | chr8_4:52010002-52010021 | None:intergenic | 35.0% | |
| ATGAGTTATGCCAATGTTTG+TGG | + | chr8_4:52010038-52010057 | Msa1332110:intron | 35.0% | |
| GGTGAATTACATAATCGCAA+AGG | - | chr8_4:52010298-52010317 | None:intergenic | 35.0% | |
| TAGAAGTCATATGCTCAACA+TGG | + | chr8_4:52010477-52010496 | Msa1332110:CDS | 35.0% | |
| !!! | ATTATTTTTGGAGGAAAGGC+TGG | + | chr8_4:52010654-52010673 | Msa1332110:CDS | 35.0% |
| TGTGTTGAAGTATGACATTG+AGG | + | chr8_4:52010687-52010706 | Msa1332110:CDS | 35.0% | |
| TTCTGCAGTATCCAAATCTT+TGG | - | chr8_4:52010977-52010996 | None:intergenic | 35.0% | |
| TAGTCTCATATATACATCGG+AGG | - | chr8_4:52011392-52011411 | None:intergenic | 35.0% | |
| !!! | GACAGTTTTTTGAGATGCAA+CGG | + | chr8_4:52011424-52011443 | Msa1332110:intron | 35.0% |
| !!! | ACAGTTTTTTGAGATGCAAC+GGG | + | chr8_4:52011425-52011444 | Msa1332110:intron | 35.0% |
| CTTGATATATACAGAAGGGT+TGG | + | chr8_4:52011465-52011484 | Msa1332110:CDS | 35.0% | |
| CACGTCCAATATCAAGATTA+CGG | - | chr8_4:52011616-52011635 | None:intergenic | 35.0% | |
| ATCTTTGACATAGTCTTCCA+TGG | - | chr8_4:52011786-52011805 | None:intergenic | 35.0% | |
| CAAAGGTTACAGAACAAAAC+AGG | - | chr8_4:52011861-52011880 | None:intergenic | 35.0% | |
| !! | GTTTTGTTCTGTAACCTTTG+TGG | + | chr8_4:52011861-52011880 | Msa1332110:intron | 35.0% |
| CTTCATACATAAAGCCACAA+AGG | - | chr8_4:52011878-52011897 | None:intergenic | 35.0% | |
| ATATCAAGTCCTGAAACAAC+TGG | - | chr8_4:52012022-52012041 | None:intergenic | 35.0% | |
| !! | AGCAGCAATTTTGTTGTCAA+CGG | - | chr8_4:52012163-52012182 | None:intergenic | 35.0% |
| GTAATTACCAAAAGATCAGG+TGG | - | chr8_4:52012303-52012322 | None:intergenic | 35.0% | |
| GTTATATGCAAAGCAACCAT+CGG | - | chr8_4:52012365-52012384 | None:intergenic | 35.0% | |
| !!! | GGAGAGAAATTTTTTAGTGC+AGG | - | chr8_4:52012400-52012419 | None:intergenic | 35.0% |
| AGGATCATCCATATTCTAGT+AGG | - | chr8_4:52012434-52012453 | None:intergenic | 35.0% | |
| TGTCTTAACGCAAATGCAAA+AGG | - | chr8_4:52012527-52012546 | None:intergenic | 35.0% | |
| CAATAGTAATTGGATCGTTG+GGG | + | chr8_4:52012589-52012608 | Msa1332110:intron | 35.0% | |
| ! | CGACTATTAATTTGGAACGA+AGG | - | chr8_4:52012668-52012687 | None:intergenic | 35.0% |
| ACAAGAGATTGTATGAGTTG+AGG | - | chr8_4:52013111-52013130 | None:intergenic | 35.0% | |
| ! | GCTGTTTCAAATCATGCAAA+TGG | + | chr8_4:52013163-52013182 | Msa1332110:CDS | 35.0% |
| TTTCTTCTTCAATGCTCCAT+TGG | + | chr8_4:52013265-52013284 | Msa1332110:intron | 35.0% | |
| ACGTATGTGAAAATTGGCAA+GGG | - | chr8_4:52013306-52013325 | None:intergenic | 35.0% | |
| TACGTATGTGAAAATTGGCA+AGG | - | chr8_4:52013307-52013326 | None:intergenic | 35.0% | |
| TCAACACTACTAAACTGTCT+TGG | - | chr8_4:52013433-52013452 | None:intergenic | 35.0% | |
| !! | GAAAGAGTGCTTATATTCAG+AGG | + | chr8_4:52013500-52013519 | Msa1332110:intron | 35.0% |
| ATCCTTATAAATAGGGATGG+AGG | + | chr8_4:52013542-52013561 | Msa1332110:intron | 35.0% | |
| TCCTTATAAATAGGGATGGA+GGG | + | chr8_4:52013543-52013562 | Msa1332110:intron | 35.0% | |
| AGATGACCTATTTGGTATTC+AGG | + | chr8_4:52013706-52013725 | Msa1332110:intron | 35.0% | |
| TTCTCAGTGCATCATCATAT+AGG | - | chr8_4:52013763-52013782 | None:intergenic | 35.0% | |
| AAAAATGGATCGTGCATTGT+CGG | - | chr8_4:52013848-52013867 | None:intergenic | 35.0% | |
| ! | ATTTGCAGATTGTTGTTGAG+GGG | - | chr8_4:52013978-52013997 | None:intergenic | 35.0% |
| ! | GATTTGCAGATTGTTGTTGA+GGG | - | chr8_4:52013979-52013998 | None:intergenic | 35.0% |
| ! | CAACAATCTGCAAATCCTTT+TGG | + | chr8_4:52013983-52014002 | Msa1332110:CDS | 35.0% |
| CCATATTGAGGATTTCCAAA+AGG | - | chr8_4:52014001-52014020 | None:intergenic | 35.0% | |
| !! | CCTTTTGGAAATCCTCAATA+TGG | + | chr8_4:52013998-52014017 | Msa1332110:CDS | 35.0% |
| CAATCATACAATCCTTACAC+AGG | + | chr8_4:52014058-52014077 | Msa1332110:CDS | 35.0% | |
| CCACAAGAAATGTTTAGATG+AGG | - | chr8_4:52014084-52014103 | None:intergenic | 35.0% | |
| CCTCATCTAAACATTTCTTG+TGG | + | chr8_4:52014081-52014100 | Msa1332110:exon | 35.0% | |
| AAACATGGATACTCCACATT+TGG | + | chr8_4:52014116-52014135 | Msa1332110:three_prime_UTR | 35.0% | |
| ! | TAAATAGCAGATGAGGGTTT+TGG | + | chr8_4:52014219-52014238 | Msa1332110:three_prime_UTR | 35.0% |
| AACTGAGTAACTTTAGTGCA+AGG | + | chr8_4:52014453-52014472 | Msa1332110:three_prime_UTR | 35.0% | |
| ATAGAACCCCTATAAGTGGA+GGG | - | chr8_4:52008274-52008293 | None:intergenic | 40.0% | |
| AATAGAACCCCTATAAGTGG+AGG | - | chr8_4:52008275-52008294 | None:intergenic | 40.0% | |
| CGAGAGAGAGAAAAGAGAAA+AGG | - | chr8_4:52008602-52008621 | None:intergenic | 40.0% | |
| !!! | CAGGATTTTGGAATTGTGAG+AGG | + | chr8_4:52009167-52009186 | Msa1332110:intron | 40.0% |
| !! | AAAAGCACTTGGAGCTCTTA+AGG | + | chr8_4:52009225-52009244 | Msa1332110:CDS | 40.0% |
| TAAGGTCAACAGTGGTTACA+AGG | + | chr8_4:52009270-52009289 | Msa1332110:CDS | 40.0% | |
| GAATGTGTTTCTCCTTAGCT+GGG | - | chr8_4:52009424-52009443 | None:intergenic | 40.0% | |
| GACAAACAAATCGATGACGT+AGG | - | chr8_4:52009556-52009575 | None:intergenic | 40.0% | |
| ! | TTGTCACATGTTCTGAACCA+AGG | + | chr8_4:52009571-52009590 | Msa1332110:intron | 40.0% |
| CATAATAAACGCGATGTCCT+TGG | - | chr8_4:52009591-52009610 | None:intergenic | 40.0% | |
| AGGGAATTGTTGGATACGTT+AGG | + | chr8_4:52009709-52009728 | Msa1332110:intron | 40.0% | |
| GGGAATTGTTGGATACGTTA+GGG | + | chr8_4:52009710-52009729 | Msa1332110:intron | 40.0% | |
| GCCTATATTCTTTCTTGCCA+AGG | + | chr8_4:52009982-52010001 | Msa1332110:intron | 40.0% | |
| GATGATCAAGCCACAAACAT+TGG | - | chr8_4:52010051-52010070 | None:intergenic | 40.0% | |
| ATTCACAAACACATGCTCAG+TGG | - | chr8_4:52010319-52010338 | None:intergenic | 40.0% | |
| AAAGATGACTCGAGTCCAAA+TGG | + | chr8_4:52010508-52010527 | Msa1332110:CDS | 40.0% | |
| GGATTAAGACAAGCACCATT+TGG | - | chr8_4:52010526-52010545 | None:intergenic | 40.0% | |
| ! | TTCGTGTTTTGTGTTCAGCA+TGG | + | chr8_4:52010602-52010621 | Msa1332110:intron | 40.0% |
| ! | TCGTGTTTTGTGTTCAGCAT+GGG | + | chr8_4:52010603-52010622 | Msa1332110:intron | 40.0% |
| AGCATGGGATTATTCTGCAT+GGG | + | chr8_4:52010618-52010637 | Msa1332110:intron | 40.0% | |
| GTCATAGAGGACCAAAGATT+TGG | + | chr8_4:52010963-52010982 | Msa1332110:intron | 40.0% | |
| TAGAGAAGCTGTTGTAAAGC+TGG | - | chr8_4:52011015-52011034 | None:intergenic | 40.0% | |
| CAGCTTCTCTATCGAGTTAT+TGG | + | chr8_4:52011024-52011043 | Msa1332110:CDS | 40.0% | |
| TTATTTACAGCTGCTCCTTG+TGG | - | chr8_4:52011156-52011175 | None:intergenic | 40.0% | |
| GATTCAGTTAGCACTCCAAT+TGG | + | chr8_4:52011182-52011201 | Msa1332110:CDS | 40.0% | |
| CGTAATCTTGATATTGGACG+TGG | + | chr8_4:52011614-52011633 | Msa1332110:CDS | 40.0% | |
| GAAGTTCATCAAAGTTGAGC+AGG | + | chr8_4:52011640-52011659 | Msa1332110:CDS | 40.0% | |
| TTCATCAAAGTTGAGCAGGT+TGG | + | chr8_4:52011644-52011663 | Msa1332110:intron | 40.0% | |
| ! | TGGCTTGCATAAACGATGAT+GGG | - | chr8_4:52011766-52011785 | None:intergenic | 40.0% |
| ! | ATGGCTTGCATAAACGATGA+TGG | - | chr8_4:52011767-52011786 | None:intergenic | 40.0% |
| ATCATCGTTTATGCAAGCCA+TGG | + | chr8_4:52011766-52011785 | Msa1332110:CDS | 40.0% | |
| AGCAATAGTTCGAAAGGATC+AGG | + | chr8_4:52011817-52011836 | Msa1332110:CDS | 40.0% | |
| ACATGGACAACAACTATGAG+CGG | - | chr8_4:52011979-52011998 | None:intergenic | 40.0% | |
| GGTGAAAGTGAAACAGTACA+TGG | - | chr8_4:52011996-52012015 | None:intergenic | 40.0% | |
| ! | TGCTGCTCCAAAAGAAGTTT+TGG | + | chr8_4:52012176-52012195 | Msa1332110:CDS | 40.0% |
| ATTACCAAAAGATCAGGTGG+TGG | - | chr8_4:52012300-52012319 | None:intergenic | 40.0% | |
| !!! | TTCTTTTGGTGCCCTGTTTT+TGG | + | chr8_4:52012330-52012349 | Msa1332110:intron | 40.0% |
| ATTGGAAGAGAAGAATGCCT+TGG | + | chr8_4:52012471-52012490 | Msa1332110:CDS | 40.0% | |
| CAAAAGGCCAGAAAATTACC+GGG | - | chr8_4:52012511-52012530 | None:intergenic | 40.0% | |
| GCAAAAGGCCAGAAAATTAC+CGG | - | chr8_4:52012512-52012531 | None:intergenic | 40.0% | |
| ! | TAATTTGGAATGGAGCGAGT+AGG | + | chr8_4:52012935-52012954 | Msa1332110:intron | 40.0% |
| ! | GCATGATTTGAAACAGCAGA+AGG | - | chr8_4:52013160-52013179 | None:intergenic | 40.0% |
| TCCCTCCATCCCTATTTATA+AGG | - | chr8_4:52013547-52013566 | None:intergenic | 40.0% | |
| TCAAGTATACGTGCAAGCAA+GGG | - | chr8_4:52013668-52013687 | None:intergenic | 40.0% | |
| ATCAAGTATACGTGCAAGCA+AGG | - | chr8_4:52013669-52013688 | None:intergenic | 40.0% | |
| GATACATGAAAGACTGTTGC+TGG | - | chr8_4:52013925-52013944 | None:intergenic | 40.0% | |
| ! | GCAGCAACAAATGATGATGA+TGG | + | chr8_4:52013952-52013971 | Msa1332110:CDS | 40.0% |
| ! | GGATTTGCAGATTGTTGTTG+AGG | - | chr8_4:52013980-52013999 | None:intergenic | 40.0% |
| GCGTTAACAGTAACCAATCA+GGG | - | chr8_4:52014301-52014320 | None:intergenic | 40.0% | |
| TGCGTTAACAGTAACCAATC+AGG | - | chr8_4:52014302-52014321 | None:intergenic | 40.0% | |
| GTTACTGTTAACGCATTAGC+AGG | + | chr8_4:52014307-52014326 | Msa1332110:three_prime_UTR | 40.0% | |
| TATACTTCCCACCATGTACA+GGG | - | chr8_4:52014375-52014394 | None:intergenic | 40.0% | |
| ATATACTTCCCACCATGTAC+AGG | - | chr8_4:52014376-52014395 | None:intergenic | 40.0% | |
| ! | TTTCTCGGCCTCAAGGTTTT+AGG | - | chr8_4:52008431-52008450 | None:intergenic | 45.0% |
| ACCTTGAGGCCGAGAAAATT+AGG | + | chr8_4:52008434-52008453 | Msa1332110:five_prime_UTR | 45.0% | |
| ! | TCCTAATTTTCTCGGCCTCA+AGG | - | chr8_4:52008438-52008457 | None:intergenic | 45.0% |
| TATGAGCTGCTTGCTTCGTT+TGG | - | chr8_4:52008545-52008564 | None:intergenic | 45.0% | |
| TGTGAGAGGGAGAATATGTC+TGG | + | chr8_4:52009181-52009200 | Msa1332110:exon | 45.0% | |
| CTTAGCCAATGAGACAGTAG+TGG | - | chr8_4:52009254-52009273 | None:intergenic | 45.0% | |
| ! | CACTACTGTCTCATTGGCTA+AGG | + | chr8_4:52009252-52009271 | Msa1332110:CDS | 45.0% |
| ! | TCATTGGCTAAGGTCAACAG+TGG | + | chr8_4:52009262-52009281 | Msa1332110:CDS | 45.0% |
| CGAATGTGTTTCTCCTTAGC+TGG | - | chr8_4:52009425-52009444 | None:intergenic | 45.0% | |
| GCTAAGGAGAAACACATTCG+AGG | + | chr8_4:52009425-52009444 | Msa1332110:CDS | 45.0% | |
| GATCTCAGCTACAAGACCTA+GGG | + | chr8_4:52009783-52009802 | Msa1332110:CDS | 45.0% | |
| CAGCATGGGATTATTCTGCA+TGG | + | chr8_4:52010617-52010636 | Msa1332110:intron | 45.0% | |
| ! | CTATCGAGTTATTGGTTGCC+AGG | + | chr8_4:52011032-52011051 | Msa1332110:CDS | 45.0% |
| AGTTGGATCAAAAGCTCACC+TGG | - | chr8_4:52011053-52011072 | None:intergenic | 45.0% | |
| CAGTTAGCACTCCAATTGGT+AGG | + | chr8_4:52011186-52011205 | Msa1332110:intron | 45.0% | |
| !! | AAGGTGCTTTATTTGGGTCC+AGG | + | chr8_4:52011559-52011578 | Msa1332110:intron | 45.0% |
| ! | GCTTGCATAAACGATGATGG+GGG | - | chr8_4:52011764-52011783 | None:intergenic | 45.0% |
| GGCTTGCATAAACGATGATG+GGG | - | chr8_4:52011765-52011784 | None:intergenic | 45.0% | |
| TATGTCAAAGATGCTCCCCA+GGG | + | chr8_4:52011794-52011813 | Msa1332110:CDS | 45.0% | |
| TTTCGAACTATTGCTCCCTG+GGG | - | chr8_4:52011812-52011831 | None:intergenic | 45.0% | |
| CTTTCGAACTATTGCTCCCT+GGG | - | chr8_4:52011813-52011832 | None:intergenic | 45.0% | |
| ! | TTCACCTCTCCAGTTGTTTC+AGG | + | chr8_4:52012010-52012029 | Msa1332110:intron | 45.0% |
| AAGTCCTGAAACAACTGGAG+AGG | - | chr8_4:52012017-52012036 | None:intergenic | 45.0% | |
| TCCACTTTCACAGGTTCAGA+CGG | - | chr8_4:52012261-52012280 | None:intergenic | 45.0% | |
| ! | ACAACCACCACCTGATCTTT+TGG | + | chr8_4:52012293-52012312 | Msa1332110:CDS | 45.0% |
| CAGAAAATTACCGGGAACGA+TGG | - | chr8_4:52012503-52012522 | None:intergenic | 45.0% | |
| ! | CATCGTTCCCGGTAATTTTC+TGG | + | chr8_4:52012501-52012520 | Msa1332110:intron | 45.0% |
| AATCATGCAAATGGAACCGC+CGG | + | chr8_4:52013172-52013191 | Msa1332110:CDS | 45.0% | |
| GCAGCACTTTCATTTGAGCT+AGG | - | chr8_4:52013223-52013242 | None:intergenic | 45.0% | |
| CAGCAGCTAGCAAATTGGTA+TGG | + | chr8_4:52013242-52013261 | Msa1332110:intron | 45.0% | |
| GCAAGCAAGGGTAATGATTG+TGG | - | chr8_4:52013656-52013675 | None:intergenic | 45.0% | |
| GACCTATTTGGTATTCAGGC+TGG | + | chr8_4:52013710-52013729 | Msa1332110:intron | 45.0% | |
| CTCCAGCCTGAATACCAAAT+AGG | - | chr8_4:52013715-52013734 | None:intergenic | 45.0% | |
| CTATTTGGTATTCAGGCTGG+AGG | + | chr8_4:52013713-52013732 | Msa1332110:intron | 45.0% | |
| TGGAGCAGCCATTGTATTAG+AGG | - | chr8_4:52013873-52013892 | None:intergenic | 45.0% | |
| TGCTCCACACTCTGTTCAAA+TGG | + | chr8_4:52013886-52013905 | Msa1332110:CDS | 45.0% | |
| TGAACTGTGGCTCCATATTG+AGG | - | chr8_4:52014013-52014032 | None:intergenic | 45.0% | |
| GTTTAGATGAGGCCTGTGTA+AGG | - | chr8_4:52014073-52014092 | None:intergenic | 45.0% | |
| TCCACATTTGGTTGTATGCG+TGG | + | chr8_4:52014128-52014147 | Msa1332110:three_prime_UTR | 45.0% | |
| CCACATTTGGTTGTATGCGT+GGG | + | chr8_4:52014129-52014148 | Msa1332110:three_prime_UTR | 45.0% | |
| TCTAGCTATCTATGGCACAC+AGG | - | chr8_4:52014182-52014201 | None:intergenic | 45.0% | |
| CAGTTTCCATTCCCTGTACA+TGG | + | chr8_4:52014361-52014380 | Msa1332110:three_prime_UTR | 45.0% | |
| TTTCCATTCCCTGTACATGG+TGG | + | chr8_4:52014364-52014383 | Msa1332110:three_prime_UTR | 45.0% | |
| TTCCATTCCCTGTACATGGT+GGG | + | chr8_4:52014365-52014384 | Msa1332110:three_prime_UTR | 45.0% | |
| TAACCCCACCCTCCACTTAT+AGG | + | chr8_4:52008263-52008282 | Msa1332110:five_prime_UTR | 50.0% | |
| AACCCCACCCTCCACTTATA+GGG | + | chr8_4:52008264-52008283 | Msa1332110:five_prime_UTR | 50.0% | |
| AACCCCTATAAGTGGAGGGT+GGG | - | chr8_4:52008270-52008289 | None:intergenic | 50.0% | |
| ! | TGCTTCGTTTGGTTGGTCGT+CGG | - | chr8_4:52008534-52008553 | None:intergenic | 50.0% |
| AGCTGCTTGCTTCGTTTGGT+TGG | - | chr8_4:52008541-52008560 | None:intergenic | 50.0% | |
| GAGAGGGAGAATATGTCTGG+TGG | + | chr8_4:52009184-52009203 | Msa1332110:exon | 50.0% | |
| GGACACCACTACTGTCTCAT+TGG | + | chr8_4:52009246-52009265 | Msa1332110:CDS | 50.0% | |
| TCATGTTGAACGCCCAGCTA+AGG | + | chr8_4:52009409-52009428 | Msa1332110:CDS | 50.0% | |
| CGATCTCAGCTACAAGACCT+AGG | + | chr8_4:52009782-52009801 | Msa1332110:CDS | 50.0% | |
| ! | AGCGAGAGCATGGATGCAAT+AGG | - | chr8_4:52009818-52009837 | None:intergenic | 50.0% |
| ATTGCATCCATGCTCTCGCT+AGG | + | chr8_4:52009818-52009837 | Msa1332110:CDS | 50.0% | |
| ATAATCGCCTAGCGAGAGCA+TGG | - | chr8_4:52009828-52009847 | None:intergenic | 50.0% | |
| TTGTCATTCACCGTGCTCTG+AGG | + | chr8_4:52010407-52010426 | Msa1332110:CDS | 50.0% | |
| TGTCATTCACCGTGCTCTGA+GGG | + | chr8_4:52010408-52010427 | Msa1332110:CDS | 50.0% | |
| TTTCGTATGCTGCAGCCACA+AGG | + | chr8_4:52011138-52011157 | Msa1332110:intron | 50.0% | |
| CTATGTCAAAGATGCTCCCC+AGG | + | chr8_4:52011793-52011812 | Msa1332110:CDS | 50.0% | |
| CCTTTCGAACTATTGCTCCC+TGG | - | chr8_4:52011814-52011833 | None:intergenic | 50.0% | |
| CCAGGGAGCAATAGTTCGAA+AGG | + | chr8_4:52011811-52011830 | Msa1332110:CDS | 50.0% | |
| ACTTTCACAGGTTCAGACGG+TGG | - | chr8_4:52012258-52012277 | None:intergenic | 50.0% | |
| ACCGTCTGAACCTGTGAAAG+TGG | + | chr8_4:52012257-52012276 | Msa1332110:CDS | 50.0% | |
| GGTGGTGTTTCCACTTTCAC+AGG | - | chr8_4:52012270-52012289 | None:intergenic | 50.0% | |
| ! | AGATCAGGTGGTGGTTGTAC+TGG | - | chr8_4:52012291-52012310 | None:intergenic | 50.0% |
| AATTCTGCAGCAGCTGGAAC+AGG | - | chr8_4:52012454-52012473 | None:intergenic | 50.0% | |
| TGTTCCAGCTGCTGCAGAAT+TGG | + | chr8_4:52012453-52012472 | Msa1332110:CDS | 50.0% | |
| TCTTCCAATTCTGCAGCAGC+TGG | - | chr8_4:52012460-52012479 | None:intergenic | 50.0% | |
| !! | TTGGCTTTAGCCATCGTTCC+CGG | + | chr8_4:52012490-52012509 | Msa1332110:CDS | 50.0% |
| TGCATGTTTGACGATGTCGC+TGG | - | chr8_4:52012816-52012835 | None:intergenic | 50.0% | |
| ATCATGCAAATGGAACCGCC+GGG | + | chr8_4:52013173-52013192 | Msa1332110:CDS | 50.0% | |
| AACAAGAGCCAATTCCCACC+CGG | - | chr8_4:52013194-52013213 | None:intergenic | 50.0% | |
| TGCTGCAGCAGCTAGCAAAT+TGG | + | chr8_4:52013237-52013256 | Msa1332110:CDS | 50.0% | |
| TGGTATTCAGGCTGGAGGTT+TGG | + | chr8_4:52013718-52013737 | Msa1332110:intron | 50.0% | |
| TAATCCATGGGAGCAAGCAC+CGG | + | chr8_4:52013805-52013824 | Msa1332110:CDS | 50.0% | |
| ! | GCTGCCATTTGAACAGAGTG+TGG | - | chr8_4:52013893-52013912 | None:intergenic | 50.0% |
| ACAGGCATACCTGAGCCATA+GGG | - | chr8_4:52014037-52014056 | None:intergenic | 50.0% | |
| AACAGGCATACCTGAGCCAT+AGG | - | chr8_4:52014038-52014057 | None:intergenic | 50.0% | |
| CCCACGCATACAACCAAATG+TGG | - | chr8_4:52014132-52014151 | None:intergenic | 50.0% | |
| TTCCCACCATGTACAGGGAA+TGG | - | chr8_4:52014370-52014389 | None:intergenic | 50.0% | |
| ACCCCACCCTCCACTTATAG+GGG | + | chr8_4:52008265-52008284 | Msa1332110:five_prime_UTR | 55.0% | |
| ACCCCTATAAGTGGAGGGTG+GGG | - | chr8_4:52008269-52008288 | None:intergenic | 55.0% | |
| GAACCCCTATAAGTGGAGGG+TGG | - | chr8_4:52008271-52008290 | None:intergenic | 55.0% | |
| CAATAGGCAACGTCAGCCCT+AGG | - | chr8_4:52009802-52009821 | None:intergenic | 55.0% | |
| ATACAGAAGGGTTGGGCTGC+AGG | + | chr8_4:52011473-52011492 | Msa1332110:CDS | 55.0% | |
| ACTCTGACAGTCTCTCAGCC+TGG | - | chr8_4:52011580-52011599 | None:intergenic | 55.0% | |
| TCACAGGTTCAGACGGTGGA+GGG | - | chr8_4:52012254-52012273 | None:intergenic | 55.0% | |
| TTCACAGGTTCAGACGGTGG+AGG | - | chr8_4:52012255-52012274 | None:intergenic | 55.0% | |
| ! | TCAGGTGGTGGTTGTACTGG+TGG | - | chr8_4:52012288-52012307 | None:intergenic | 55.0% |
| GGGAACGATGGCTAAAGCCA+AGG | - | chr8_4:52012491-52012510 | None:intergenic | 55.0% | |
| TGAGCCATAGGGGTGAACTG+TGG | - | chr8_4:52014026-52014045 | None:intergenic | 55.0% | |
| ACAGTTCACCCCTATGGCTC+AGG | + | chr8_4:52014025-52014044 | Msa1332110:CDS | 55.0% | |
| CAGGCATACCTGAGCCATAG+GGG | - | chr8_4:52014036-52014055 | None:intergenic | 55.0% | |
| !! | CATTCACCGTGCTCTGAGGG+AGG | + | chr8_4:52010411-52010430 | Msa1332110:CDS | 60.0% |
| GATCCACCTCCCTCAGAGCA+CGG | - | chr8_4:52010420-52010439 | None:intergenic | 60.0% | |
| ACAGGTTCAGACGGTGGAGG+GGG | - | chr8_4:52012252-52012271 | None:intergenic | 60.0% | |
| CACAGGTTCAGACGGTGGAG+GGG | - | chr8_4:52012253-52012272 | None:intergenic | 60.0% | |
| ATGCAAATGGAACCGCCGGG+TGG | + | chr8_4:52013176-52013195 | Msa1332110:CDS | 60.0% | |
| TGCAAATGGAACCGCCGGGT+GGG | + | chr8_4:52013177-52013196 | Msa1332110:CDS | 60.0% | |
| AAGAGCCAATTCCCACCCGG+CGG | - | chr8_4:52013191-52013210 | None:intergenic | 60.0% | |
| GGTTGCATCATGCCTCCAGC+CGG | - | chr8_4:52013827-52013846 | None:intergenic | 60.0% | |
| GGAGCCACAGTTCACCCCTA+TGG | + | chr8_4:52014019-52014038 | Msa1332110:CDS | 60.0% | |
| !! | TCACCGTGCTCTGAGGGAGG+TGG | + | chr8_4:52010414-52010433 | Msa1332110:CDS | 65.0% |
| TGGAACCGCCGGGTGGGAAT+TGG | + | chr8_4:52013183-52013202 | Msa1332110:CDS | 65.0% | |
| TCAGACGGTGGAGGGGGCGA+GGG | - | chr8_4:52012246-52012265 | None:intergenic | 70.0% | |
| TTCAGACGGTGGAGGGGGCG+AGG | - | chr8_4:52012247-52012266 | None:intergenic | 70.0% | |
| CCAGCCGGTGCTTGCTCCCA+TGG | - | chr8_4:52013812-52013831 | None:intergenic | 70.0% | |
| !! | CCATGGGAGCAAGCACCGGC+TGG | + | chr8_4:52013809-52013828 | Msa1332110:CDS | 70.0% |
| !! | TGGGAGCAAGCACCGGCTGG+AGG | + | chr8_4:52013812-52013831 | Msa1332110:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 52008222 | 52014519 | 52008222 | ID=Msa1332110;Name=Msa1332110 |
| chr8_4 | mRNA | 52008222 | 52014519 | 52008222 | ID=Msa1332110-mRNA-1;Parent=Msa1332110;Name=Msa1332110-mRNA-1;_AED=0.10;_eAED=0.10;_QI=528|1|1|1|0.87|0.88|17|429|545 |
| chr8_4 | exon | 52008222 | 52008342 | 52008222 | ID=Msa1332110-mRNA-1:exon:15520;Parent=Msa1332110-mRNA-1 |
| chr8_4 | exon | 52008419 | 52008799 | 52008419 | ID=Msa1332110-mRNA-1:exon:15521;Parent=Msa1332110-mRNA-1 |
| chr8_4 | exon | 52009170 | 52009291 | 52009170 | ID=Msa1332110-mRNA-1:exon:15522;Parent=Msa1332110-mRNA-1 |
| chr8_4 | exon | 52009377 | 52009446 | 52009377 | ID=Msa1332110-mRNA-1:exon:15523;Parent=Msa1332110-mRNA-1 |
| chr8_4 | exon | 52009770 | 52009867 | 52009770 | ID=Msa1332110-mRNA-1:exon:15524;Parent=Msa1332110-mRNA-1 |
| chr8_4 | exon | 52010388 | 52010529 | 52010388 | ID=Msa1332110-mRNA-1:exon:15525;Parent=Msa1332110-mRNA-1 |
| chr8_4 | exon | 52010620 | 52010720 | 52010620 | ID=Msa1332110-mRNA-1:exon:15526;Parent=Msa1332110-mRNA-1 |
| chr8_4 | exon | 52010970 | 52011053 | 52010970 | ID=Msa1332110-mRNA-1:exon:15527;Parent=Msa1332110-mRNA-1 |
| chr8_4 | exon | 52011153 | 52011203 | 52011153 | ID=Msa1332110-mRNA-1:exon:15528;Parent=Msa1332110-mRNA-1 |
| chr8_4 | exon | 52011287 | 52011352 | 52011287 | ID=Msa1332110-mRNA-1:exon:15529;Parent=Msa1332110-mRNA-1 |
| chr8_4 | exon | 52011429 | 52011494 | 52011429 | ID=Msa1332110-mRNA-1:exon:15530;Parent=Msa1332110-mRNA-1 |
| chr8_4 | exon | 52011581 | 52011661 | 52011581 | ID=Msa1332110-mRNA-1:exon:15531;Parent=Msa1332110-mRNA-1 |
| chr8_4 | exon | 52011761 | 52011838 | 52011761 | ID=Msa1332110-mRNA-1:exon:15532;Parent=Msa1332110-mRNA-1 |
| chr8_4 | exon | 52012159 | 52012314 | 52012159 | ID=Msa1332110-mRNA-1:exon:15533;Parent=Msa1332110-mRNA-1 |
| chr8_4 | exon | 52012439 | 52012511 | 52012439 | ID=Msa1332110-mRNA-1:exon:15534;Parent=Msa1332110-mRNA-1 |
| chr8_4 | exon | 52013146 | 52013258 | 52013146 | ID=Msa1332110-mRNA-1:exon:15535;Parent=Msa1332110-mRNA-1 |
| chr8_4 | exon | 52013728 | 52014519 | 52013728 | ID=Msa1332110-mRNA-1:exon:15536;Parent=Msa1332110-mRNA-1 |
| chr8_4 | five_prime_UTR | 52008222 | 52008342 | 52008222 | ID=Msa1332110-mRNA-1:five_prime_utr;Parent=Msa1332110-mRNA-1 |
| chr8_4 | five_prime_UTR | 52008419 | 52008799 | 52008419 | ID=Msa1332110-mRNA-1:five_prime_utr;Parent=Msa1332110-mRNA-1 |
| chr8_4 | five_prime_UTR | 52009170 | 52009195 | 52009170 | ID=Msa1332110-mRNA-1:five_prime_utr;Parent=Msa1332110-mRNA-1 |
| chr8_4 | CDS | 52009196 | 52009291 | 52009196 | ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1 |
| chr8_4 | CDS | 52009377 | 52009446 | 52009377 | ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1 |
| chr8_4 | CDS | 52009770 | 52009867 | 52009770 | ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1 |
| chr8_4 | CDS | 52010388 | 52010529 | 52010388 | ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1 |
| chr8_4 | CDS | 52010620 | 52010720 | 52010620 | ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1 |
| chr8_4 | CDS | 52010970 | 52011053 | 52010970 | ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1 |
| chr8_4 | CDS | 52011153 | 52011203 | 52011153 | ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1 |
| chr8_4 | CDS | 52011287 | 52011352 | 52011287 | ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1 |
| chr8_4 | CDS | 52011429 | 52011494 | 52011429 | ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1 |
| chr8_4 | CDS | 52011581 | 52011661 | 52011581 | ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1 |
| chr8_4 | CDS | 52011761 | 52011838 | 52011761 | ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1 |
| chr8_4 | CDS | 52012159 | 52012314 | 52012159 | ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1 |
| chr8_4 | CDS | 52012439 | 52012511 | 52012439 | ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1 |
| chr8_4 | CDS | 52013146 | 52013258 | 52013146 | ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1 |
| chr8_4 | CDS | 52013728 | 52014090 | 52013728 | ID=Msa1332110-mRNA-1:cds;Parent=Msa1332110-mRNA-1 |
| chr8_4 | three_prime_UTR | 52014091 | 52014519 | 52014091 | ID=Msa1332110-mRNA-1:three_prime_utr;Parent=Msa1332110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
