Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384830 | XP_041020649.1 | 76.364 | 110 | 26 | 0 | 2 | 111 | 3 | 112 | 6.45e-58 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384830 | sp|Q43636|TRXH_RICCO | 73.636 | 110 | 29 | 0 | 2 | 111 | 3 | 112 | 2.13e-57 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384830 | A0A2I4DQ33 | 75.455 | 110 | 27 | 0 | 2 | 111 | 3 | 112 | 2.56e-57 | 183 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa0384830 | 0.813803 | 2.127937e-51 | -8.615850e-47 |
| Msa0092220 | Msa0384830 | 0.820742 | 5.841468e-53 | -8.615850e-47 |
| Msa0177320 | Msa0384830 | 0.811137 | 8.136591e-51 | -8.615850e-47 |
| Msa0384830 | Msa0479260 | 0.984965 | 4.041783e-162 | -8.615850e-47 |
| Msa0384830 | Msa0524260 | 0.819674 | 1.026035e-52 | -8.615850e-47 |
| Msa0384830 | Msa0524370 | 0.815718 | 8.009622e-52 | -8.615850e-47 |
| Msa0384830 | Msa0600350 | 0.801478 | 8.835109e-49 | -8.615850e-47 |
| Msa0384830 | Msa0672980 | 0.801543 | 8.567730e-49 | -8.615850e-47 |
| Msa0384830 | Msa0873940 | 0.821214 | 4.546906e-53 | -8.615850e-47 |
| Msa0384830 | Msa1093420 | 0.803028 | 4.238285e-49 | -8.615850e-47 |
| Msa0384830 | Msa1202470 | 0.809097 | 2.239133e-50 | -8.615850e-47 |
| Msa0384830 | Msa1304790 | 0.803128 | 4.041516e-49 | -8.615850e-47 |
| Msa0384830 | Msa1364970 | 0.817045 | 4.042843e-52 | -8.615850e-47 |
| Msa0384830 | Msa1367460 | 0.819381 | 1.196888e-52 | -8.615850e-47 |
| Msa0384830 | Msa1384390 | 0.900707 | 5.597798e-78 | -8.615850e-47 |
| Msa0384830 | Msa1417600 | 0.819002 | 1.460032e-52 | -8.615850e-47 |
| Msa0384830 | Msa1435550 | 0.816130 | 6.481095e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384830 | MtrunA17_Chr3g0142051 | 72.727 | 110 | 30 | 0 | 2 | 111 | 3 | 112 | 1.85e-57 | 174 |
| Msa0384830 | MtrunA17_Chr1g0155721 | 69.298 | 114 | 35 | 0 | 2 | 115 | 3 | 116 | 7.10e-57 | 173 |
| Msa0384830 | MtrunA17_Chr5g0404831 | 64.545 | 110 | 39 | 0 | 2 | 111 | 5 | 114 | 9.33e-52 | 160 |
| Msa0384830 | MtrunA17_Chr7g0216481 | 49.020 | 102 | 52 | 0 | 10 | 111 | 31 | 132 | 5.41e-33 | 113 |
| Msa0384830 | MtrunA17_Chr8g0334481 | 41.346 | 104 | 61 | 0 | 5 | 108 | 26 | 129 | 4.83e-32 | 110 |
| Msa0384830 | MtrunA17_Chr7g0245141 | 44.000 | 100 | 56 | 0 | 5 | 104 | 24 | 123 | 3.86e-31 | 108 |
| Msa0384830 | MtrunA17_Chr8g0393201 | 43.119 | 109 | 62 | 0 | 3 | 111 | 225 | 333 | 1.89e-30 | 111 |
| Msa0384830 | MtrunA17_Chr2g0319291 | 43.478 | 115 | 65 | 0 | 3 | 117 | 8 | 122 | 1.95e-28 | 100 |
| Msa0384830 | MtrunA17_Chr2g0280411 | 44.340 | 106 | 59 | 0 | 4 | 109 | 8 | 113 | 1.54e-27 | 99.0 |
| Msa0384830 | MtrunA17_Chr5g0415771 | 46.667 | 105 | 56 | 0 | 7 | 111 | 21 | 125 | 4.31e-27 | 97.8 |
| Msa0384830 | MtrunA17_Chr5g0415761 | 42.991 | 107 | 61 | 0 | 7 | 113 | 22 | 128 | 4.78e-27 | 97.8 |
| Msa0384830 | MtrunA17_Chr5g0415741 | 44.144 | 111 | 62 | 0 | 3 | 113 | 16 | 126 | 2.96e-26 | 95.5 |
| Msa0384830 | MtrunA17_Chr4g0042051 | 42.478 | 113 | 65 | 0 | 3 | 115 | 8 | 120 | 1.03e-25 | 94.4 |
| Msa0384830 | MtrunA17_Chr3g0142031 | 93.023 | 43 | 3 | 0 | 60 | 102 | 4 | 46 | 2.19e-22 | 83.6 |
| Msa0384830 | MtrunA17_Chr4g0052481 | 36.190 | 105 | 65 | 1 | 8 | 110 | 62 | 166 | 2.01e-20 | 82.0 |
| Msa0384830 | MtrunA17_Chr7g0249461 | 38.679 | 106 | 61 | 2 | 5 | 109 | 79 | 181 | 8.73e-18 | 75.5 |
| Msa0384830 | MtrunA17_Chr1g0201781 | 36.842 | 76 | 47 | 1 | 25 | 99 | 76 | 151 | 1.15e-15 | 69.7 |
| Msa0384830 | MtrunA17_Chr3g0125821 | 37.000 | 100 | 58 | 3 | 14 | 111 | 76 | 172 | 1.84e-15 | 69.3 |
| Msa0384830 | MtrunA17_Chr3g0092051 | 33.043 | 115 | 70 | 4 | 4 | 114 | 86 | 197 | 1.81e-13 | 65.1 |
| Msa0384830 | MtrunA17_Chr2g0317731 | 32.432 | 111 | 72 | 3 | 2 | 110 | 62 | 171 | 2.27e-12 | 60.8 |
| Msa0384830 | MtrunA17_Chr3g0142041 | 86.667 | 30 | 4 | 0 | 1 | 30 | 1 | 30 | 2.63e-12 | 58.9 |
| Msa0384830 | MtrunA17_Chr6g0488561 | 30.682 | 88 | 57 | 2 | 7 | 92 | 77 | 162 | 3.49e-12 | 61.2 |
| Msa0384830 | MtrunA17_Chr1g0157201 | 32.353 | 102 | 65 | 2 | 7 | 104 | 208 | 309 | 3.61e-12 | 62.0 |
| Msa0384830 | MtrunA17_Chr1g0211871 | 37.313 | 67 | 41 | 1 | 26 | 91 | 85 | 151 | 3.61e-12 | 60.5 |
| Msa0384830 | MtrunA17_Chr8g0360031 | 35.227 | 88 | 55 | 2 | 25 | 110 | 87 | 174 | 3.90e-12 | 60.5 |
| Msa0384830 | MtrunA17_Chr7g0264661 | 34.667 | 75 | 47 | 1 | 31 | 105 | 49 | 121 | 7.18e-12 | 58.5 |
| Msa0384830 | MtrunA17_Chr4g0047431 | 30.189 | 106 | 70 | 1 | 5 | 110 | 3 | 104 | 2.14e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384830 | AT3G51030.1 | 68.182 | 110 | 35 | 0 | 2 | 111 | 3 | 112 | 2.08e-55 | 169 |
| Msa0384830 | AT5G42980.1 | 60.360 | 111 | 44 | 0 | 1 | 111 | 1 | 111 | 1.52e-47 | 149 |
| Msa0384830 | AT1G45145.1 | 58.559 | 111 | 46 | 0 | 1 | 111 | 1 | 111 | 3.34e-47 | 149 |
| Msa0384830 | AT1G19730.1 | 54.783 | 115 | 51 | 1 | 2 | 115 | 3 | 117 | 1.00e-40 | 132 |
| Msa0384830 | AT3G08710.2 | 42.500 | 120 | 67 | 1 | 5 | 124 | 23 | 140 | 1.27e-32 | 112 |
| Msa0384830 | AT3G08710.3 | 42.500 | 120 | 67 | 1 | 5 | 124 | 23 | 140 | 1.27e-32 | 112 |
| Msa0384830 | AT3G08710.1 | 42.500 | 120 | 67 | 1 | 5 | 124 | 23 | 140 | 1.27e-32 | 112 |
| Msa0384830 | AT5G39950.1 | 45.872 | 109 | 59 | 0 | 2 | 110 | 22 | 130 | 2.09e-30 | 106 |
| Msa0384830 | AT3G17880.2 | 40.909 | 110 | 65 | 0 | 4 | 113 | 262 | 371 | 2.65e-29 | 109 |
| Msa0384830 | AT3G17880.1 | 40.909 | 110 | 65 | 0 | 4 | 113 | 269 | 378 | 3.23e-29 | 109 |
| Msa0384830 | AT3G56420.1 | 43.137 | 102 | 58 | 0 | 4 | 105 | 39 | 140 | 2.15e-28 | 102 |
| Msa0384830 | AT3G56420.2 | 43.137 | 102 | 58 | 0 | 4 | 105 | 39 | 140 | 2.15e-28 | 102 |
| Msa0384830 | AT3G56420.3 | 43.137 | 102 | 58 | 0 | 4 | 105 | 39 | 140 | 2.15e-28 | 102 |
| Msa0384830 | AT1G11530.1 | 46.667 | 105 | 56 | 0 | 5 | 109 | 2 | 106 | 4.61e-28 | 100 |
| Msa0384830 | AT2G40790.2 | 41.584 | 101 | 59 | 0 | 4 | 104 | 39 | 139 | 8.30e-26 | 95.5 |
| Msa0384830 | AT2G40790.1 | 41.584 | 101 | 59 | 0 | 4 | 104 | 39 | 139 | 8.30e-26 | 95.5 |
| Msa0384830 | AT1G59730.1 | 40.187 | 107 | 64 | 0 | 5 | 111 | 21 | 127 | 2.24e-25 | 94.0 |
| Msa0384830 | AT1G69880.1 | 40.000 | 105 | 63 | 0 | 7 | 111 | 39 | 143 | 2.90e-25 | 94.0 |
| Msa0384830 | AT2G35010.2 | 40.777 | 103 | 59 | 1 | 4 | 104 | 83 | 185 | 6.24e-20 | 81.6 |
| Msa0384830 | AT2G35010.1 | 40.777 | 103 | 59 | 1 | 4 | 104 | 83 | 185 | 6.24e-20 | 81.6 |
| Msa0384830 | AT1G31020.1 | 35.135 | 111 | 70 | 1 | 2 | 110 | 46 | 156 | 3.28e-17 | 73.6 |
| Msa0384830 | AT5G16400.1 | 35.849 | 106 | 64 | 2 | 5 | 109 | 78 | 180 | 1.71e-16 | 72.4 |
| Msa0384830 | AT3G02730.1 | 36.792 | 106 | 63 | 2 | 5 | 109 | 68 | 170 | 3.20e-16 | 71.6 |
| Msa0384830 | AT1G43560.1 | 36.842 | 76 | 47 | 1 | 25 | 99 | 74 | 149 | 6.27e-16 | 70.5 |
| Msa0384830 | AT1G76760.1 | 34.211 | 76 | 49 | 1 | 25 | 99 | 79 | 154 | 4.53e-15 | 68.6 |
| Msa0384830 | AT1G07700.1 | 34.000 | 100 | 58 | 2 | 20 | 111 | 100 | 199 | 1.29e-12 | 62.4 |
| Msa0384830 | AT1G07700.4 | 34.000 | 100 | 58 | 2 | 20 | 111 | 100 | 199 | 1.29e-12 | 62.4 |
| Msa0384830 | AT1G07700.2 | 34.000 | 100 | 58 | 2 | 20 | 111 | 100 | 199 | 1.29e-12 | 62.4 |
| Msa0384830 | AT4G26160.1 | 31.707 | 82 | 54 | 1 | 7 | 88 | 95 | 174 | 1.76e-12 | 62.4 |
| Msa0384830 | AT1G07700.3 | 34.000 | 100 | 58 | 2 | 20 | 111 | 113 | 212 | 2.93e-12 | 61.6 |
| Msa0384830 | AT4G03520.1 | 30.476 | 105 | 68 | 3 | 8 | 110 | 82 | 183 | 8.70e-12 | 60.1 |
| Msa0384830 | AT4G29670.1 | 29.545 | 88 | 58 | 2 | 7 | 92 | 105 | 190 | 6.52e-11 | 58.5 |
| Msa0384830 | AT4G04950.1 | 30.000 | 110 | 69 | 2 | 30 | 132 | 24 | 132 | 7.31e-11 | 58.9 |
| Msa0384830 | AT4G29670.2 | 29.545 | 88 | 58 | 2 | 7 | 92 | 105 | 190 | 7.66e-11 | 58.2 |
| Msa0384830 | AT4G32580.1 | 26.957 | 115 | 84 | 0 | 18 | 132 | 12 | 126 | 9.72e-11 | 56.6 |
Find 38 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGAGTCATTTCCCTTC+TGG | 0.238843 | 3_1:+88190977 | None:intergenic |
| TAATAAGACTGAGCTGAATT+CGG | 0.378699 | 3_1:-88190444 | Msa0384830:CDS |
| ATTCATCCACGTCAACCTTA+AGG | 0.389106 | 3_1:+88190698 | None:intergenic |
| AATAAGACTGAGCTGAATTC+GGG | 0.398840 | 3_1:-88190443 | Msa0384830:CDS |
| GCCAGATGTCACCTTCCTTA+AGG | 0.403432 | 3_1:-88190713 | Msa0384830:CDS |
| GATTTAACCAACCAGTTTGT+TGG | 0.404325 | 3_1:+88190960 | None:intergenic |
| GCTTTCCTTCTTTCAAGAAC+AGG | 0.406276 | 3_1:+88190489 | None:intergenic |
| CGACTTTCCTCGTTAAGGTT+GGG | 0.408745 | 3_1:+88189658 | None:intergenic |
| CAATCCGACTTTCCTCGTTA+AGG | 0.410799 | 3_1:+88189653 | None:intergenic |
| CCGACTTTCCTCGTTAAGGT+TGG | 0.437799 | 3_1:+88189657 | None:intergenic |
| GGGAAATGACTCCAACAAAC+TGG | 0.461512 | 3_1:-88190971 | Msa0384830:intron |
| ACATTCCTGTTCTTGAAAGA+AGG | 0.465257 | 3_1:-88190494 | Msa0384830:CDS |
| TTTCCTCGTTAAGGTTGGGC+CGG | 0.472087 | 3_1:+88189662 | None:intergenic |
| TTCCTCGTTAAGGTTGGGCC+GGG | 0.474199 | 3_1:+88189663 | None:intergenic |
| ACCTTAAGGAAGGTGACATC+TGG | 0.488781 | 3_1:+88190712 | None:intergenic |
| AAATCCACAGTGTTGAGGCT+TGG | 0.494177 | 3_1:-88191011 | Msa0384830:CDS |
| TTCAGACTGTTGCTGAGGAG+TGG | 0.502035 | 3_1:-88190535 | Msa0384830:intron |
| TCAGACTGTTGCTGAGGAGT+GGG | 0.502412 | 3_1:-88190534 | Msa0384830:intron |
| AAAGCTAGTGAACAAGGTTG+TGG | 0.516587 | 3_1:-88190471 | Msa0384830:CDS |
| AAGCTAGTGAACAAGGTTGT+GGG | 0.524835 | 3_1:-88190470 | Msa0384830:CDS |
| AAGGTTGGGCCGGGTTGAGA+TGG | 0.539413 | 3_1:+88189672 | None:intergenic |
| CACCTTCCTTAAGGTTGACG+TGG | 0.565554 | 3_1:-88190704 | Msa0384830:CDS |
| AGAAGGAAAGCTAGTGAACA+AGG | 0.575053 | 3_1:-88190477 | Msa0384830:CDS |
| ATTTCTTCAGACTGTTGCTG+AGG | 0.578897 | 3_1:-88190540 | Msa0384830:intron |
| GATTGAAATCCACAGTGTTG+AGG | 0.593831 | 3_1:-88191016 | Msa0384830:CDS |
| CCAACCTTAACGAGGAAAGT+CGG | 0.599046 | 3_1:-88189657 | Msa0384830:CDS |
| TGAGATGGATACTCATGAGT+AGG | 0.609136 | 3_1:+88189687 | None:intergenic |
| TTGGAACGAACAAATCCAGA+AGG | 0.609233 | 3_1:-88190992 | Msa0384830:CDS |
| TCGCAGAGTTGGCTCAAAAG+CGG | 0.612847 | 3_1:-88190735 | Msa0384830:CDS |
| AATGGGGCAATGAAACGGCA+TGG | 0.612943 | 3_1:+88190760 | None:intergenic |
| TCTTTCAAGAACAGGAATGT+CGG | 0.617427 | 3_1:+88190497 | None:intergenic |
| CAAGAACAGGAATGTCGGCA+TGG | 0.627664 | 3_1:+88190502 | None:intergenic |
| CATGAGTATCCATCTCAACC+CGG | 0.639871 | 3_1:-88189681 | Msa0384830:CDS |
| ATCCACGTCAACCTTAAGGA+AGG | 0.640907 | 3_1:+88190702 | None:intergenic |
| AACCCGGCCCAACCTTAACG+AGG | 0.671561 | 3_1:-88189665 | Msa0384830:CDS |
| CTAGTGAACAAGGTTGTGGG+TGG | 0.677639 | 3_1:-88190467 | Msa0384830:CDS |
| CGTTCCAAGCCTCAACACTG+TGG | 0.688562 | 3_1:+88191007 | None:intergenic |
| TGGAACGAACAAATCCAGAA+GGG | 0.692449 | 3_1:-88190991 | Msa0384830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAACACATACAAAATA+TGG | + | chr3_1:88189833-88189852 | None:intergenic | 15.0% |
| !! | AAATTAGGGTAATTAATTAA+AGG | + | chr3_1:88190153-88190172 | None:intergenic | 15.0% |
| !! | TTAATAACACATACAAAATA+TGG | + | chr3_1:88189833-88189852 | None:intergenic | 15.0% |
| !! | AAATTAGGGTAATTAATTAA+AGG | + | chr3_1:88190153-88190172 | None:intergenic | 15.0% |
| !!! | GTATGTGTTATTAAAGATTA+TGG | - | chr3_1:88189839-88189858 | Msa0384830:intron | 20.0% |
| !!! | TTTTTTTTTATATGTGAGAC+CGG | + | chr3_1:88190310-88190329 | None:intergenic | 20.0% |
| !! | AATAGAAAGGAAAATCAATT+TGG | + | chr3_1:88190467-88190486 | None:intergenic | 20.0% |
| !! | AAAGGAATATAGAAATAGAA+AGG | + | chr3_1:88190480-88190499 | None:intergenic | 20.0% |
| !! | ACCATAATAAGATATAATCA+AGG | - | chr3_1:88190823-88190842 | Msa0384830:intron | 20.0% |
| !! | TCCTTGATTATATCTTATTA+TGG | + | chr3_1:88190827-88190846 | None:intergenic | 20.0% |
| !! | AACATAATGTGATTTATGTT+TGG | - | chr3_1:88190929-88190948 | Msa0384830:intron | 20.0% |
| !!! | GTATGTGTTATTAAAGATTA+TGG | - | chr3_1:88189839-88189858 | Msa0384830:intron | 20.0% |
| !!! | TTTTTTTTTATATGTGAGAC+CGG | + | chr3_1:88190310-88190329 | None:intergenic | 20.0% |
| !! | AATAGAAAGGAAAATCAATT+TGG | + | chr3_1:88190467-88190486 | None:intergenic | 20.0% |
| !! | AAAGGAATATAGAAATAGAA+AGG | + | chr3_1:88190480-88190499 | None:intergenic | 20.0% |
| !! | ACCATAATAAGATATAATCA+AGG | - | chr3_1:88190823-88190842 | Msa0384830:intron | 20.0% |
| !! | TCCTTGATTATATCTTATTA+TGG | + | chr3_1:88190827-88190846 | None:intergenic | 20.0% |
| !! | AACATAATGTGATTTATGTT+TGG | - | chr3_1:88190929-88190948 | Msa0384830:intron | 20.0% |
| ! | CAAAGATTTAACATAAGGAT+GGG | + | chr3_1:88189787-88189806 | None:intergenic | 25.0% |
| ! | TCAAAGATTTAACATAAGGA+TGG | + | chr3_1:88189788-88189807 | None:intergenic | 25.0% |
| ! | AAGGTCAAAGATTTAACATA+AGG | + | chr3_1:88189792-88189811 | None:intergenic | 25.0% |
| ! | GCAGTTAAAAATTCTAACAA+AGG | + | chr3_1:88189811-88189830 | None:intergenic | 25.0% |
| ! | ATTAAAGATTATGGCATCTT+TGG | - | chr3_1:88189848-88189867 | Msa0384830:intron | 25.0% |
| ! | AAAACTGAATGAAAAGCAAA+AGG | + | chr3_1:88190498-88190517 | None:intergenic | 25.0% |
| !! | ATTTTATACAACCAAGTGAA+AGG | + | chr3_1:88190583-88190602 | None:intergenic | 25.0% |
| ! | TTAACAAAGTGAAGATACAA+GGG | + | chr3_1:88190613-88190632 | None:intergenic | 25.0% |
| ! | ATTAACAAAGTGAAGATACA+AGG | + | chr3_1:88190614-88190633 | None:intergenic | 25.0% |
| ! | ATTCATGTTCATATTCAAGA+TGG | - | chr3_1:88190767-88190786 | Msa0384830:CDS | 25.0% |
| !! | GAATAGAAATGTGTTTTCTT+TGG | - | chr3_1:88190845-88190864 | Msa0384830:intron | 25.0% |
| !! | TTGACTATGTATCATTGATT+TGG | - | chr3_1:88190891-88190910 | Msa0384830:intron | 25.0% |
| ! | CAAAGATTTAACATAAGGAT+GGG | + | chr3_1:88189787-88189806 | None:intergenic | 25.0% |
| ! | TCAAAGATTTAACATAAGGA+TGG | + | chr3_1:88189788-88189807 | None:intergenic | 25.0% |
| ! | AAGGTCAAAGATTTAACATA+AGG | + | chr3_1:88189792-88189811 | None:intergenic | 25.0% |
| ! | GCAGTTAAAAATTCTAACAA+AGG | + | chr3_1:88189811-88189830 | None:intergenic | 25.0% |
| ! | ATTAAAGATTATGGCATCTT+TGG | - | chr3_1:88189848-88189867 | Msa0384830:intron | 25.0% |
| ! | AAAACTGAATGAAAAGCAAA+AGG | + | chr3_1:88190498-88190517 | None:intergenic | 25.0% |
| !! | ATTTTATACAACCAAGTGAA+AGG | + | chr3_1:88190583-88190602 | None:intergenic | 25.0% |
| ! | TTAACAAAGTGAAGATACAA+GGG | + | chr3_1:88190613-88190632 | None:intergenic | 25.0% |
| ! | ATTAACAAAGTGAAGATACA+AGG | + | chr3_1:88190614-88190633 | None:intergenic | 25.0% |
| ! | ATTCATGTTCATATTCAAGA+TGG | - | chr3_1:88190767-88190786 | Msa0384830:CDS | 25.0% |
| !! | GAATAGAAATGTGTTTTCTT+TGG | - | chr3_1:88190845-88190864 | Msa0384830:intron | 25.0% |
| !! | TTGACTATGTATCATTGATT+TGG | - | chr3_1:88190891-88190910 | Msa0384830:intron | 25.0% |
| AAGTTGAAGACAGACAAAAA+TGG | - | chr3_1:88189654-88189673 | Msa0384830:CDS | 30.0% | |
| !! | TAGTTGATTTTACTGCTTCT+TGG | - | chr3_1:88189920-88189939 | Msa0384830:intron | 30.0% |
| TACGTGACATGACATTATTA+TGG | - | chr3_1:88190067-88190086 | Msa0384830:intron | 30.0% | |
| GTTCTTCTAGATTAATCTTC+AGG | + | chr3_1:88190108-88190127 | None:intergenic | 30.0% | |
| TAATAAGACTGAGCTGAATT+CGG | - | chr3_1:88190265-88190284 | Msa0384830:intron | 30.0% | |
| TGAATGTCAGTTTAGCAAAA+TGG | + | chr3_1:88190535-88190554 | None:intergenic | 30.0% | |
| ATAACTTAGAACTCATCCAT+GGG | + | chr3_1:88190663-88190682 | None:intergenic | 30.0% | |
| TCTTATGCTATCATAGATTG+TGG | - | chr3_1:88190693-88190712 | Msa0384830:CDS | 30.0% | |
| AAGTTGAAGACAGACAAAAA+TGG | - | chr3_1:88189654-88189673 | Msa0384830:CDS | 30.0% | |
| !! | TAGTTGATTTTACTGCTTCT+TGG | - | chr3_1:88189920-88189939 | Msa0384830:intron | 30.0% |
| TACGTGACATGACATTATTA+TGG | - | chr3_1:88190067-88190086 | Msa0384830:intron | 30.0% | |
| GTTCTTCTAGATTAATCTTC+AGG | + | chr3_1:88190108-88190127 | None:intergenic | 30.0% | |
| TAATAAGACTGAGCTGAATT+CGG | - | chr3_1:88190265-88190284 | Msa0384830:intron | 30.0% | |
| TGAATGTCAGTTTAGCAAAA+TGG | + | chr3_1:88190535-88190554 | None:intergenic | 30.0% | |
| ATAACTTAGAACTCATCCAT+GGG | + | chr3_1:88190663-88190682 | None:intergenic | 30.0% | |
| TCTTATGCTATCATAGATTG+TGG | - | chr3_1:88190693-88190712 | Msa0384830:CDS | 30.0% | |
| TTGAAGACAGACAAAAATGG+CGG | - | chr3_1:88189657-88189676 | Msa0384830:CDS | 35.0% | |
| GATTTAACCAACCAGTTTGT+TGG | + | chr3_1:88189752-88189771 | None:intergenic | 35.0% | |
| TAAGGATGGGAAATATGAGA+AGG | + | chr3_1:88189774-88189793 | None:intergenic | 35.0% | |
| GCAACAGTCTGAAGAAATTA+GGG | + | chr3_1:88190167-88190186 | None:intergenic | 35.0% | |
| AGCAACAGTCTGAAGAAATT+AGG | + | chr3_1:88190168-88190187 | None:intergenic | 35.0% | |
| TCTTTCAAGAACAGGAATGT+CGG | + | chr3_1:88190215-88190234 | None:intergenic | 35.0% | |
| ACATTCCTGTTCTTGAAAGA+AGG | - | chr3_1:88190215-88190234 | Msa0384830:intron | 35.0% | |
| AATAAGACTGAGCTGAATTC+GGG | - | chr3_1:88190266-88190285 | Msa0384830:intron | 35.0% | |
| ! | TTTTTATATGTGAGACCGGA+CGG | + | chr3_1:88190306-88190325 | None:intergenic | 35.0% |
| TGTTGCATTTACCTTTCACT+TGG | - | chr3_1:88190569-88190588 | Msa0384830:intron | 35.0% | |
| CATTATATTTCTCTTGCCCA+TGG | - | chr3_1:88190644-88190663 | Msa0384830:intron | 35.0% | |
| CATAACTTAGAACTCATCCA+TGG | + | chr3_1:88190664-88190683 | None:intergenic | 35.0% | |
| !! | CATGGATGAGTTCTAAGTTA+TGG | - | chr3_1:88190662-88190681 | Msa0384830:intron | 35.0% |
| ! | CATCTACAAATTTTCAGCAG+AGG | + | chr3_1:88190741-88190760 | None:intergenic | 35.0% |
| TTGAAGACAGACAAAAATGG+CGG | - | chr3_1:88189657-88189676 | Msa0384830:CDS | 35.0% | |
| GATTTAACCAACCAGTTTGT+TGG | + | chr3_1:88189752-88189771 | None:intergenic | 35.0% | |
| TAAGGATGGGAAATATGAGA+AGG | + | chr3_1:88189774-88189793 | None:intergenic | 35.0% | |
| GCAACAGTCTGAAGAAATTA+GGG | + | chr3_1:88190167-88190186 | None:intergenic | 35.0% | |
| AGCAACAGTCTGAAGAAATT+AGG | + | chr3_1:88190168-88190187 | None:intergenic | 35.0% | |
| TCTTTCAAGAACAGGAATGT+CGG | + | chr3_1:88190215-88190234 | None:intergenic | 35.0% | |
| ACATTCCTGTTCTTGAAAGA+AGG | - | chr3_1:88190215-88190234 | Msa0384830:intron | 35.0% | |
| AATAAGACTGAGCTGAATTC+GGG | - | chr3_1:88190266-88190285 | Msa0384830:intron | 35.0% | |
| ! | TTTTTATATGTGAGACCGGA+CGG | + | chr3_1:88190306-88190325 | None:intergenic | 35.0% |
| TGTTGCATTTACCTTTCACT+TGG | - | chr3_1:88190569-88190588 | Msa0384830:intron | 35.0% | |
| CATTATATTTCTCTTGCCCA+TGG | - | chr3_1:88190644-88190663 | Msa0384830:intron | 35.0% | |
| CATAACTTAGAACTCATCCA+TGG | + | chr3_1:88190664-88190683 | None:intergenic | 35.0% | |
| !! | CATGGATGAGTTCTAAGTTA+TGG | - | chr3_1:88190662-88190681 | Msa0384830:intron | 35.0% |
| ! | CATCTACAAATTTTCAGCAG+AGG | + | chr3_1:88190741-88190760 | None:intergenic | 35.0% |
| GATTGAAATCCACAGTGTTG+AGG | - | chr3_1:88189693-88189712 | Msa0384830:CDS | 40.0% | |
| TTGGAACGAACAAATCCAGA+AGG | - | chr3_1:88189717-88189736 | Msa0384830:intron | 40.0% | |
| TGGAACGAACAAATCCAGAA+GGG | - | chr3_1:88189718-88189737 | Msa0384830:intron | 40.0% | |
| AATGACTCCAACAAACTGGT+TGG | - | chr3_1:88189742-88189761 | Msa0384830:intron | 40.0% | |
| ! | GATTTTACTGCTTCTTGGTG+TGG | - | chr3_1:88189925-88189944 | Msa0384830:intron | 40.0% |
| CGAAAAATGGGGCAATGAAA+CGG | + | chr3_1:88189957-88189976 | None:intergenic | 40.0% | |
| ATTCATCCACGTCAACCTTA+AGG | + | chr3_1:88190014-88190033 | None:intergenic | 40.0% | |
| ATTTCTTCAGACTGTTGCTG+AGG | - | chr3_1:88190169-88190188 | Msa0384830:intron | 40.0% | |
| GCTTTCCTTCTTTCAAGAAC+AGG | + | chr3_1:88190223-88190242 | None:intergenic | 40.0% | |
| AGAAGGAAAGCTAGTGAACA+AGG | - | chr3_1:88190232-88190251 | Msa0384830:intron | 40.0% | |
| AAAGCTAGTGAACAAGGTTG+TGG | - | chr3_1:88190238-88190257 | Msa0384830:intron | 40.0% | |
| AAGCTAGTGAACAAGGTTGT+GGG | - | chr3_1:88190239-88190258 | Msa0384830:intron | 40.0% | |
| TTGTGGCTGTGAATTGTGAT+AGG | - | chr3_1:88190710-88190729 | Msa0384830:CDS | 40.0% | |
| AAACTGACTGCCTCTAACAA+TGG | - | chr3_1:88190795-88190814 | Msa0384830:CDS | 40.0% | |
| ATGGTTTCCTCCATTGTTAG+AGG | + | chr3_1:88190808-88190827 | None:intergenic | 40.0% | |
| TGAGATGGATACTCATGAGT+AGG | + | chr3_1:88191025-88191044 | None:intergenic | 40.0% | |
| GATTGAAATCCACAGTGTTG+AGG | - | chr3_1:88189693-88189712 | Msa0384830:CDS | 40.0% | |
| TTGGAACGAACAAATCCAGA+AGG | - | chr3_1:88189717-88189736 | Msa0384830:intron | 40.0% | |
| TGGAACGAACAAATCCAGAA+GGG | - | chr3_1:88189718-88189737 | Msa0384830:intron | 40.0% | |
| AATGACTCCAACAAACTGGT+TGG | - | chr3_1:88189742-88189761 | Msa0384830:intron | 40.0% | |
| ! | GATTTTACTGCTTCTTGGTG+TGG | - | chr3_1:88189925-88189944 | Msa0384830:intron | 40.0% |
| CGAAAAATGGGGCAATGAAA+CGG | + | chr3_1:88189957-88189976 | None:intergenic | 40.0% | |
| ATTCATCCACGTCAACCTTA+AGG | + | chr3_1:88190014-88190033 | None:intergenic | 40.0% | |
| ATTTCTTCAGACTGTTGCTG+AGG | - | chr3_1:88190169-88190188 | Msa0384830:intron | 40.0% | |
| GCTTTCCTTCTTTCAAGAAC+AGG | + | chr3_1:88190223-88190242 | None:intergenic | 40.0% | |
| AGAAGGAAAGCTAGTGAACA+AGG | - | chr3_1:88190232-88190251 | Msa0384830:intron | 40.0% | |
| AAAGCTAGTGAACAAGGTTG+TGG | - | chr3_1:88190238-88190257 | Msa0384830:intron | 40.0% | |
| AAGCTAGTGAACAAGGTTGT+GGG | - | chr3_1:88190239-88190258 | Msa0384830:intron | 40.0% | |
| TTGTGGCTGTGAATTGTGAT+AGG | - | chr3_1:88190710-88190729 | Msa0384830:CDS | 40.0% | |
| AAACTGACTGCCTCTAACAA+TGG | - | chr3_1:88190795-88190814 | Msa0384830:CDS | 40.0% | |
| ATGGTTTCCTCCATTGTTAG+AGG | + | chr3_1:88190808-88190827 | None:intergenic | 40.0% | |
| TGAGATGGATACTCATGAGT+AGG | + | chr3_1:88191025-88191044 | None:intergenic | 40.0% | |
| ! | CAGACAAAAATGGCGGAAGA+AGG | - | chr3_1:88189664-88189683 | Msa0384830:CDS | 45.0% |
| ! | AAATCCACAGTGTTGAGGCT+TGG | - | chr3_1:88189698-88189717 | Msa0384830:CDS | 45.0% |
| TGTTGGAGTCATTTCCCTTC+TGG | + | chr3_1:88189735-88189754 | None:intergenic | 45.0% | |
| GGGAAATGACTCCAACAAAC+TGG | - | chr3_1:88189738-88189757 | Msa0384830:intron | 45.0% | |
| AGCCAACTCTGCGAAAAATG+GGG | + | chr3_1:88189968-88189987 | None:intergenic | 45.0% | |
| GAGCCAACTCTGCGAAAAAT+GGG | + | chr3_1:88189969-88189988 | None:intergenic | 45.0% | |
| TGAGCCAACTCTGCGAAAAA+TGG | + | chr3_1:88189970-88189989 | None:intergenic | 45.0% | |
| ACCTTAAGGAAGGTGACATC+TGG | + | chr3_1:88190000-88190019 | None:intergenic | 45.0% | |
| ATCCACGTCAACCTTAAGGA+AGG | + | chr3_1:88190010-88190029 | None:intergenic | 45.0% | |
| GAGTAGATAAGTACTCCGTC+CGG | - | chr3_1:88190288-88190307 | Msa0384830:intron | 45.0% | |
| CATGAGTATCCATCTCAACC+CGG | - | chr3_1:88191028-88191047 | Msa0384830:CDS | 45.0% | |
| CGACTTTCCTCGTTAAGGTT+GGG | + | chr3_1:88191054-88191073 | None:intergenic | 45.0% | |
| CCAACCTTAACGAGGAAAGT+CGG | - | chr3_1:88191052-88191071 | Msa0384830:exon | 45.0% | |
| CAATCCGACTTTCCTCGTTA+AGG | + | chr3_1:88191059-88191078 | None:intergenic | 45.0% | |
| ! | CAGACAAAAATGGCGGAAGA+AGG | - | chr3_1:88189664-88189683 | Msa0384830:CDS | 45.0% |
| ! | AAATCCACAGTGTTGAGGCT+TGG | - | chr3_1:88189698-88189717 | Msa0384830:CDS | 45.0% |
| TGTTGGAGTCATTTCCCTTC+TGG | + | chr3_1:88189735-88189754 | None:intergenic | 45.0% | |
| GGGAAATGACTCCAACAAAC+TGG | - | chr3_1:88189738-88189757 | Msa0384830:intron | 45.0% | |
| AGCCAACTCTGCGAAAAATG+GGG | + | chr3_1:88189968-88189987 | None:intergenic | 45.0% | |
| GAGCCAACTCTGCGAAAAAT+GGG | + | chr3_1:88189969-88189988 | None:intergenic | 45.0% | |
| TGAGCCAACTCTGCGAAAAA+TGG | + | chr3_1:88189970-88189989 | None:intergenic | 45.0% | |
| ACCTTAAGGAAGGTGACATC+TGG | + | chr3_1:88190000-88190019 | None:intergenic | 45.0% | |
| ATCCACGTCAACCTTAAGGA+AGG | + | chr3_1:88190010-88190029 | None:intergenic | 45.0% | |
| GAGTAGATAAGTACTCCGTC+CGG | - | chr3_1:88190288-88190307 | Msa0384830:intron | 45.0% | |
| CATGAGTATCCATCTCAACC+CGG | - | chr3_1:88191028-88191047 | Msa0384830:CDS | 45.0% | |
| CGACTTTCCTCGTTAAGGTT+GGG | + | chr3_1:88191054-88191073 | None:intergenic | 45.0% | |
| CCAACCTTAACGAGGAAAGT+CGG | - | chr3_1:88191052-88191071 | Msa0384830:exon | 45.0% | |
| CAATCCGACTTTCCTCGTTA+AGG | + | chr3_1:88191059-88191078 | None:intergenic | 45.0% | |
| AATGGGGCAATGAAACGGCA+TGG | + | chr3_1:88189952-88189971 | None:intergenic | 50.0% | |
| !! | TGCCCCATTTTTCGCAGAGT+TGG | - | chr3_1:88189963-88189982 | Msa0384830:intron | 50.0% |
| ! | TCGCAGAGTTGGCTCAAAAG+CGG | - | chr3_1:88189974-88189993 | Msa0384830:intron | 50.0% |
| GCCAGATGTCACCTTCCTTA+AGG | - | chr3_1:88189996-88190015 | Msa0384830:intron | 50.0% | |
| CACCTTCCTTAAGGTTGACG+TGG | - | chr3_1:88190005-88190024 | Msa0384830:intron | 50.0% | |
| TTCAGACTGTTGCTGAGGAG+TGG | - | chr3_1:88190174-88190193 | Msa0384830:intron | 50.0% | |
| TCAGACTGTTGCTGAGGAGT+GGG | - | chr3_1:88190175-88190194 | Msa0384830:intron | 50.0% | |
| CAAGAACAGGAATGTCGGCA+TGG | + | chr3_1:88190210-88190229 | None:intergenic | 50.0% | |
| CTAGTGAACAAGGTTGTGGG+TGG | - | chr3_1:88190242-88190261 | Msa0384830:intron | 50.0% | |
| CTGACTGCCTCTAACAATGG+AGG | - | chr3_1:88190798-88190817 | Msa0384830:intron | 50.0% | |
| TTTCCTCGTTAAGGTTGGGC+CGG | + | chr3_1:88191050-88191069 | None:intergenic | 50.0% | |
| CCGACTTTCCTCGTTAAGGT+TGG | + | chr3_1:88191055-88191074 | None:intergenic | 50.0% | |
| AATGGGGCAATGAAACGGCA+TGG | + | chr3_1:88189952-88189971 | None:intergenic | 50.0% | |
| !! | TGCCCCATTTTTCGCAGAGT+TGG | - | chr3_1:88189963-88189982 | Msa0384830:intron | 50.0% |
| ! | TCGCAGAGTTGGCTCAAAAG+CGG | - | chr3_1:88189974-88189993 | Msa0384830:intron | 50.0% |
| GCCAGATGTCACCTTCCTTA+AGG | - | chr3_1:88189996-88190015 | Msa0384830:intron | 50.0% | |
| CACCTTCCTTAAGGTTGACG+TGG | - | chr3_1:88190005-88190024 | Msa0384830:intron | 50.0% | |
| TTCAGACTGTTGCTGAGGAG+TGG | - | chr3_1:88190174-88190193 | Msa0384830:intron | 50.0% | |
| TCAGACTGTTGCTGAGGAGT+GGG | - | chr3_1:88190175-88190194 | Msa0384830:intron | 50.0% | |
| CAAGAACAGGAATGTCGGCA+TGG | + | chr3_1:88190210-88190229 | None:intergenic | 50.0% | |
| CTAGTGAACAAGGTTGTGGG+TGG | - | chr3_1:88190242-88190261 | Msa0384830:intron | 50.0% | |
| CTGACTGCCTCTAACAATGG+AGG | - | chr3_1:88190798-88190817 | Msa0384830:intron | 50.0% | |
| TTTCCTCGTTAAGGTTGGGC+CGG | + | chr3_1:88191050-88191069 | None:intergenic | 50.0% | |
| CCGACTTTCCTCGTTAAGGT+TGG | + | chr3_1:88191055-88191074 | None:intergenic | 50.0% | |
| CGTTCCAAGCCTCAACACTG+TGG | + | chr3_1:88189705-88189724 | None:intergenic | 55.0% | |
| TTCCTCGTTAAGGTTGGGCC+GGG | + | chr3_1:88191049-88191068 | None:intergenic | 55.0% | |
| CGTTCCAAGCCTCAACACTG+TGG | + | chr3_1:88189705-88189724 | None:intergenic | 55.0% | |
| TTCCTCGTTAAGGTTGGGCC+GGG | + | chr3_1:88191049-88191068 | None:intergenic | 55.0% | |
| ! | AAGGTTGGGCCGGGTTGAGA+TGG | + | chr3_1:88191040-88191059 | None:intergenic | 60.0% |
| AACCCGGCCCAACCTTAACG+AGG | - | chr3_1:88191044-88191063 | Msa0384830:exon | 60.0% | |
| ! | AAGGTTGGGCCGGGTTGAGA+TGG | + | chr3_1:88191040-88191059 | None:intergenic | 60.0% |
| AACCCGGCCCAACCTTAACG+AGG | - | chr3_1:88191044-88191063 | Msa0384830:exon | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 88189638 | 88191093 | 88189638 | ID=Msa0384830;Name=Msa0384830 |
| chr3_1 | mRNA | 88189638 | 88191093 | 88189638 | ID=Msa0384830-mRNA-1;Parent=Msa0384830;Name=Msa0384830-mRNA-1;_AED=0.47;_eAED=0.47;_QI=35|0.66|0.5|0.75|1|1|4|0|138 |
| chr3_1 | exon | 88189638 | 88189725 | 88189638 | ID=Msa0384830-mRNA-1:exon:23721;Parent=Msa0384830-mRNA-1 |
| chr3_1 | exon | 88190434 | 88190552 | 88190434 | ID=Msa0384830-mRNA-1:exon:23720;Parent=Msa0384830-mRNA-1 |
| chr3_1 | exon | 88190693 | 88190815 | 88190693 | ID=Msa0384830-mRNA-1:exon:23719;Parent=Msa0384830-mRNA-1 |
| chr3_1 | exon | 88190972 | 88191093 | 88190972 | ID=Msa0384830-mRNA-1:exon:23718;Parent=Msa0384830-mRNA-1 |
| chr3_1 | five_prime_UTR | 88191059 | 88191093 | 88191059 | ID=Msa0384830-mRNA-1:five_prime_utr;Parent=Msa0384830-mRNA-1 |
| chr3_1 | CDS | 88190972 | 88191058 | 88190972 | ID=Msa0384830-mRNA-1:cds;Parent=Msa0384830-mRNA-1 |
| chr3_1 | CDS | 88190693 | 88190815 | 88190693 | ID=Msa0384830-mRNA-1:cds;Parent=Msa0384830-mRNA-1 |
| chr3_1 | CDS | 88190434 | 88190552 | 88190434 | ID=Msa0384830-mRNA-1:cds;Parent=Msa0384830-mRNA-1 |
| chr3_1 | CDS | 88189638 | 88189725 | 88189638 | ID=Msa0384830-mRNA-1:cds;Parent=Msa0384830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
