Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479260 | XP_041020649.1 | 80.952 | 84 | 16 | 0 | 2 | 85 | 3 | 86 | 6.63e-46 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479260 | sp|Q43636|TRXH_RICCO | 78.571 | 84 | 18 | 0 | 2 | 85 | 3 | 86 | 4.02e-46 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479260 | A0A2I4DQ33 | 79.762 | 84 | 17 | 0 | 2 | 85 | 3 | 86 | 2.31e-45 | 151 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa0479260 | 0.806910 | 6.538258e-50 | -8.615850e-47 |
| Msa0092220 | Msa0479260 | 0.814966 | 1.177088e-51 | -8.615850e-47 |
| Msa0177320 | Msa0479260 | 0.804686 | 1.917207e-49 | -8.615850e-47 |
| Msa0384830 | Msa0479260 | 0.984965 | 4.041783e-162 | -8.615850e-47 |
| Msa0479260 | Msa0524260 | 0.820557 | 6.439942e-53 | -8.615850e-47 |
| Msa0479260 | Msa0524370 | 0.816063 | 6.706887e-52 | -8.615850e-47 |
| Msa0479260 | Msa0672980 | 0.801459 | 8.916611e-49 | -8.615850e-47 |
| Msa0479260 | Msa0873880 | 0.802960 | 4.376880e-49 | -8.615850e-47 |
| Msa0479260 | Msa0873940 | 0.823211 | 1.565000e-53 | -8.615850e-47 |
| Msa0479260 | Msa1093420 | 0.810032 | 1.409799e-50 | -8.615850e-47 |
| Msa0479260 | Msa1202470 | 0.809085 | 2.252359e-50 | -8.615850e-47 |
| Msa0479260 | Msa1304790 | 0.805741 | 1.153250e-49 | -8.615850e-47 |
| Msa0479260 | Msa1364970 | 0.818609 | 1.792550e-52 | -8.615850e-47 |
| Msa0479260 | Msa1367460 | 0.819213 | 1.306948e-52 | -8.615850e-47 |
| Msa0479260 | Msa1384390 | 0.900721 | 5.516326e-78 | -8.615850e-47 |
| Msa0479260 | Msa1417600 | 0.820465 | 6.760113e-53 | -8.615850e-47 |
| Msa0479260 | Msa1435550 | 0.817638 | 2.972395e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479260 | MtrunA17_Chr3g0142051 | 76.190 | 84 | 20 | 0 | 2 | 85 | 3 | 86 | 2.16e-45 | 142 |
| Msa0479260 | MtrunA17_Chr1g0155721 | 73.810 | 84 | 22 | 0 | 2 | 85 | 3 | 86 | 1.43e-44 | 140 |
| Msa0479260 | MtrunA17_Chr5g0404831 | 69.048 | 84 | 26 | 0 | 2 | 85 | 5 | 88 | 1.02e-41 | 132 |
| Msa0479260 | MtrunA17_Chr5g0415771 | 46.835 | 79 | 42 | 0 | 7 | 85 | 21 | 99 | 6.61e-26 | 93.2 |
| Msa0479260 | MtrunA17_Chr5g0415741 | 42.857 | 84 | 48 | 0 | 2 | 85 | 15 | 98 | 1.41e-24 | 89.7 |
| Msa0479260 | MtrunA17_Chr5g0415761 | 40.506 | 79 | 47 | 0 | 7 | 85 | 22 | 100 | 7.43e-24 | 87.8 |
| Msa0479260 | MtrunA17_Chr8g0334481 | 40.741 | 81 | 48 | 0 | 5 | 85 | 26 | 106 | 1.97e-23 | 87.0 |
| Msa0479260 | MtrunA17_Chr7g0216481 | 45.570 | 79 | 43 | 0 | 7 | 85 | 28 | 106 | 4.70e-23 | 85.9 |
| Msa0479260 | MtrunA17_Chr7g0245141 | 40.741 | 81 | 48 | 0 | 5 | 85 | 24 | 104 | 1.00e-22 | 85.5 |
| Msa0479260 | MtrunA17_Chr8g0393201 | 43.373 | 83 | 47 | 0 | 3 | 85 | 225 | 307 | 1.11e-21 | 86.7 |
| Msa0479260 | MtrunA17_Chr2g0280411 | 47.561 | 82 | 43 | 0 | 4 | 85 | 8 | 89 | 1.76e-21 | 81.6 |
| Msa0479260 | MtrunA17_Chr4g0042051 | 44.318 | 88 | 49 | 0 | 3 | 90 | 8 | 95 | 5.76e-20 | 77.8 |
| Msa0479260 | MtrunA17_Chr2g0319291 | 43.373 | 83 | 47 | 0 | 3 | 85 | 8 | 90 | 1.54e-18 | 74.3 |
| Msa0479260 | MtrunA17_Chr4g0052481 | 39.241 | 79 | 46 | 1 | 8 | 84 | 62 | 140 | 1.87e-15 | 67.4 |
| Msa0479260 | MtrunA17_Chr7g0249461 | 40.741 | 81 | 44 | 2 | 5 | 84 | 79 | 156 | 1.70e-13 | 62.8 |
| Msa0479260 | MtrunA17_Chr1g0201781 | 38.710 | 62 | 37 | 1 | 25 | 85 | 76 | 137 | 4.98e-13 | 61.2 |
| Msa0479260 | MtrunA17_Chr3g0142041 | 86.667 | 30 | 4 | 0 | 1 | 30 | 1 | 30 | 6.77e-13 | 58.9 |
| Msa0479260 | MtrunA17_Chr3g0092051 | 34.568 | 81 | 51 | 1 | 4 | 84 | 86 | 164 | 2.39e-12 | 60.5 |
| Msa0479260 | MtrunA17_Chr6g0488561 | 29.487 | 78 | 53 | 1 | 7 | 84 | 77 | 152 | 3.27e-11 | 57.0 |
| Msa0479260 | MtrunA17_Chr3g0125821 | 38.356 | 73 | 41 | 2 | 14 | 85 | 76 | 145 | 4.99e-11 | 55.8 |
| Msa0479260 | MtrunA17_Chr1g0211871 | 37.705 | 61 | 37 | 1 | 26 | 85 | 85 | 145 | 7.20e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479260 | AT3G51030.1 | 70.238 | 84 | 25 | 0 | 2 | 85 | 3 | 86 | 9.68e-43 | 135 |
| Msa0479260 | AT5G42980.1 | 65.882 | 85 | 29 | 0 | 1 | 85 | 1 | 85 | 1.18e-38 | 125 |
| Msa0479260 | AT1G45145.1 | 62.353 | 85 | 32 | 0 | 1 | 85 | 1 | 85 | 8.93e-37 | 120 |
| Msa0479260 | AT1G19730.1 | 58.824 | 85 | 34 | 1 | 2 | 85 | 3 | 87 | 1.25e-30 | 105 |
| Msa0479260 | AT5G39950.1 | 48.810 | 84 | 43 | 0 | 2 | 85 | 22 | 105 | 1.75e-23 | 87.4 |
| Msa0479260 | AT3G08710.2 | 43.210 | 81 | 46 | 0 | 5 | 85 | 23 | 103 | 2.08e-23 | 87.4 |
| Msa0479260 | AT3G08710.3 | 43.210 | 81 | 46 | 0 | 5 | 85 | 23 | 103 | 2.08e-23 | 87.4 |
| Msa0479260 | AT3G08710.1 | 43.210 | 81 | 46 | 0 | 5 | 85 | 23 | 103 | 2.08e-23 | 87.4 |
| Msa0479260 | AT3G56420.1 | 41.667 | 84 | 49 | 0 | 2 | 85 | 37 | 120 | 1.84e-21 | 82.8 |
| Msa0479260 | AT3G56420.2 | 41.667 | 84 | 49 | 0 | 2 | 85 | 37 | 120 | 1.84e-21 | 82.8 |
| Msa0479260 | AT3G56420.3 | 41.667 | 84 | 49 | 0 | 2 | 85 | 37 | 120 | 1.84e-21 | 82.8 |
| Msa0479260 | AT3G17880.2 | 41.975 | 81 | 47 | 0 | 4 | 84 | 262 | 342 | 7.62e-21 | 85.1 |
| Msa0479260 | AT3G17880.1 | 41.975 | 81 | 47 | 0 | 4 | 84 | 269 | 349 | 8.23e-21 | 85.1 |
| Msa0479260 | AT1G11530.1 | 46.914 | 81 | 43 | 0 | 5 | 85 | 2 | 82 | 1.13e-19 | 77.4 |
| Msa0479260 | AT1G69880.1 | 40.506 | 79 | 47 | 0 | 7 | 85 | 39 | 117 | 6.32e-19 | 76.3 |
| Msa0479260 | AT1G59730.1 | 40.000 | 85 | 51 | 0 | 1 | 85 | 17 | 101 | 3.82e-18 | 73.6 |
| Msa0479260 | AT2G40790.2 | 39.024 | 82 | 50 | 0 | 4 | 85 | 39 | 120 | 4.74e-18 | 73.9 |
| Msa0479260 | AT2G40790.1 | 39.024 | 82 | 50 | 0 | 4 | 85 | 39 | 120 | 4.74e-18 | 73.9 |
| Msa0479260 | AT2G35010.2 | 40.964 | 83 | 47 | 1 | 4 | 84 | 83 | 165 | 3.77e-16 | 70.1 |
| Msa0479260 | AT2G35010.1 | 40.964 | 83 | 47 | 1 | 4 | 84 | 83 | 165 | 3.77e-16 | 70.1 |
| Msa0479260 | AT1G31020.1 | 37.647 | 85 | 51 | 1 | 2 | 84 | 46 | 130 | 3.84e-15 | 66.6 |
| Msa0479260 | AT1G76760.1 | 34.722 | 72 | 46 | 1 | 25 | 95 | 79 | 150 | 1.88e-13 | 62.8 |
| Msa0479260 | AT1G43560.1 | 37.097 | 62 | 38 | 1 | 25 | 85 | 74 | 135 | 8.13e-13 | 60.8 |
| Msa0479260 | AT5G16400.1 | 43.333 | 60 | 33 | 1 | 26 | 84 | 96 | 155 | 8.46e-13 | 61.2 |
| Msa0479260 | AT4G26160.1 | 32.051 | 78 | 51 | 1 | 7 | 84 | 95 | 170 | 1.95e-12 | 60.8 |
| Msa0479260 | AT3G02730.1 | 39.506 | 81 | 45 | 2 | 5 | 84 | 68 | 145 | 3.36e-12 | 59.3 |
Find 22 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGAGTCATTTCCCTTC+TGG | 0.238843 | 3_3:+84194974 | None:intergenic |
| ATTCATCCACGTCAACCTTA+AGG | 0.389106 | 3_3:+84194695 | None:intergenic |
| GCCAGATGTCACCTTCCTTA+AGG | 0.403432 | 3_3:-84194710 | Msa0479260:CDS |
| GATTTAACCAACCAGTTTGT+TGG | 0.404325 | 3_3:+84194957 | None:intergenic |
| GGGAAATGACTCCAACAAAC+TGG | 0.461512 | 3_3:-84194968 | Msa0479260:intron |
| ACCTTAAGGAAGGTGACATC+TGG | 0.488781 | 3_3:+84194709 | None:intergenic |
| AAATCCACAGTGTTGAGGCT+TGG | 0.494177 | 3_3:-84195008 | Msa0479260:CDS |
| TTCAGACTGTTGCTGAGGAG+TGG | 0.502035 | 3_3:-84194532 | Msa0479260:intron |
| TCAGACTGTTGCTGAGGAGT+GGG | 0.502412 | 3_3:-84194531 | Msa0479260:intron |
| CACCTTCCTTAAGGTTGACG+TGG | 0.565554 | 3_3:-84194701 | Msa0479260:CDS |
| ATTTCTTCAGACTGTTGCTG+AGG | 0.578897 | 3_3:-84194537 | Msa0479260:intron |
| GATTGAAATCCACAGTGTTG+AGG | 0.593831 | 3_3:-84195013 | Msa0479260:CDS |
| TTGGAACGAACAAATCCAGA+AGG | 0.609233 | 3_3:-84194989 | Msa0479260:CDS |
| TCGCAGAGTTGGCTCAAAAG+CGG | 0.612847 | 3_3:-84194732 | Msa0479260:CDS |
| AATGGGGCAATGAAACGGCA+TGG | 0.612943 | 3_3:+84194757 | None:intergenic |
| TCTTTCAAGAACAGGAATGT+CGG | 0.617427 | 3_3:+84194494 | None:intergenic |
| CTAACGATGACAACGTGGCG+AGG | 0.625670 | 3_3:+84193522 | None:intergenic |
| CAAGAACAGGAATGTCGGCA+TGG | 0.627664 | 3_3:+84194499 | None:intergenic |
| ATCCACGTCAACCTTAAGGA+AGG | 0.640907 | 3_3:+84194699 | None:intergenic |
| CGTTCCAAGCCTCAACACTG+TGG | 0.688562 | 3_3:+84195004 | None:intergenic |
| TGGAACGAACAAATCCAGAA+GGG | 0.692449 | 3_3:-84194988 | Msa0479260:CDS |
| CCAAACTAACGATGACAACG+TGG | 0.707266 | 3_3:+84193517 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAACACATACAAAATA+TGG | + | chr3_3:84193717-84193736 | None:intergenic | 15.0% |
| !! | AAATTAGGGTAATTAATTAA+AGG | + | chr3_3:84194037-84194056 | None:intergenic | 15.0% |
| !! | TTTGTCAAAAAAAAAAAAGT+TGG | - | chr3_3:84195008-84195027 | Msa0479260:CDS | 15.0% |
| !! | TTAATAACACATACAAAATA+TGG | + | chr3_3:84193717-84193736 | None:intergenic | 15.0% |
| !! | AAATTAGGGTAATTAATTAA+AGG | + | chr3_3:84194037-84194056 | None:intergenic | 15.0% |
| !! | TTTGTCAAAAAAAAAAAAGT+TGG | - | chr3_3:84195008-84195027 | Msa0479260:CDS | 15.0% |
| !!! | GTATGTGTTATTAAAGATTA+TGG | - | chr3_3:84193723-84193742 | Msa0479260:intron | 20.0% |
| !!! | TTTTTTTTTATATGTGAGAC+CGG | + | chr3_3:84194194-84194213 | None:intergenic | 20.0% |
| !! | AATAGAAAGGAAAATCAATT+TGG | + | chr3_3:84194351-84194370 | None:intergenic | 20.0% |
| !! | AAAGGAATATAGAAATAGAA+AGG | + | chr3_3:84194364-84194383 | None:intergenic | 20.0% |
| !! | ACCATAATAAGATATAATCA+AGG | - | chr3_3:84194707-84194726 | Msa0479260:CDS | 20.0% |
| !! | TCCTTGATTATATCTTATTA+TGG | + | chr3_3:84194711-84194730 | None:intergenic | 20.0% |
| !! | AACATAATGTGATTTATGTT+TGG | - | chr3_3:84194813-84194832 | Msa0479260:intron | 20.0% |
| !!! | GTATGTGTTATTAAAGATTA+TGG | - | chr3_3:84193723-84193742 | Msa0479260:intron | 20.0% |
| !!! | TTTTTTTTTATATGTGAGAC+CGG | + | chr3_3:84194194-84194213 | None:intergenic | 20.0% |
| !! | AATAGAAAGGAAAATCAATT+TGG | + | chr3_3:84194351-84194370 | None:intergenic | 20.0% |
| !! | AAAGGAATATAGAAATAGAA+AGG | + | chr3_3:84194364-84194383 | None:intergenic | 20.0% |
| !! | ACCATAATAAGATATAATCA+AGG | - | chr3_3:84194707-84194726 | Msa0479260:CDS | 20.0% |
| !! | TCCTTGATTATATCTTATTA+TGG | + | chr3_3:84194711-84194730 | None:intergenic | 20.0% |
| !! | AACATAATGTGATTTATGTT+TGG | - | chr3_3:84194813-84194832 | Msa0479260:intron | 20.0% |
| ! | CAAAGATTTAACATAAGGAT+GGG | + | chr3_3:84193671-84193690 | None:intergenic | 25.0% |
| ! | TCAAAGATTTAACATAAGGA+TGG | + | chr3_3:84193672-84193691 | None:intergenic | 25.0% |
| ! | AAGGTCAAAGATTTAACATA+AGG | + | chr3_3:84193676-84193695 | None:intergenic | 25.0% |
| ! | GCAGTTAAAAATTCTAACAA+AGG | + | chr3_3:84193695-84193714 | None:intergenic | 25.0% |
| ! | ATTAAAGATTATGGCATCTT+TGG | - | chr3_3:84193732-84193751 | Msa0479260:intron | 25.0% |
| ! | AAAACTGAATGAAAAGCAAA+AGG | + | chr3_3:84194382-84194401 | None:intergenic | 25.0% |
| !! | ATTTTATACAACCAAGTGAA+AGG | + | chr3_3:84194467-84194486 | None:intergenic | 25.0% |
| ! | TTAACAAAGTGAAGATACAA+GGG | + | chr3_3:84194497-84194516 | None:intergenic | 25.0% |
| ! | ATTAACAAAGTGAAGATACA+AGG | + | chr3_3:84194498-84194517 | None:intergenic | 25.0% |
| ! | ATTCATGTTCATATTCAAGA+TGG | - | chr3_3:84194651-84194670 | Msa0479260:intron | 25.0% |
| !! | GAATAGAAATGTGTTTTCTT+TGG | - | chr3_3:84194729-84194748 | Msa0479260:CDS | 25.0% |
| !! | TTGACTATGTATCATTGATT+TGG | - | chr3_3:84194775-84194794 | Msa0479260:CDS | 25.0% |
| ! | TAAGAATGTAACTTAAGTGT+TGG | + | chr3_3:84194987-84195006 | None:intergenic | 25.0% |
| ! | CTTATGTTTAATTGAGTTCA+AGG | - | chr3_3:84195035-84195054 | Msa0479260:CDS | 25.0% |
| ! | CAAAGATTTAACATAAGGAT+GGG | + | chr3_3:84193671-84193690 | None:intergenic | 25.0% |
| ! | TCAAAGATTTAACATAAGGA+TGG | + | chr3_3:84193672-84193691 | None:intergenic | 25.0% |
| ! | AAGGTCAAAGATTTAACATA+AGG | + | chr3_3:84193676-84193695 | None:intergenic | 25.0% |
| ! | GCAGTTAAAAATTCTAACAA+AGG | + | chr3_3:84193695-84193714 | None:intergenic | 25.0% |
| ! | ATTAAAGATTATGGCATCTT+TGG | - | chr3_3:84193732-84193751 | Msa0479260:intron | 25.0% |
| ! | AAAACTGAATGAAAAGCAAA+AGG | + | chr3_3:84194382-84194401 | None:intergenic | 25.0% |
| !! | ATTTTATACAACCAAGTGAA+AGG | + | chr3_3:84194467-84194486 | None:intergenic | 25.0% |
| ! | TTAACAAAGTGAAGATACAA+GGG | + | chr3_3:84194497-84194516 | None:intergenic | 25.0% |
| ! | ATTAACAAAGTGAAGATACA+AGG | + | chr3_3:84194498-84194517 | None:intergenic | 25.0% |
| ! | ATTCATGTTCATATTCAAGA+TGG | - | chr3_3:84194651-84194670 | Msa0479260:intron | 25.0% |
| !! | GAATAGAAATGTGTTTTCTT+TGG | - | chr3_3:84194729-84194748 | Msa0479260:CDS | 25.0% |
| !! | TTGACTATGTATCATTGATT+TGG | - | chr3_3:84194775-84194794 | Msa0479260:CDS | 25.0% |
| ! | TAAGAATGTAACTTAAGTGT+TGG | + | chr3_3:84194987-84195006 | None:intergenic | 25.0% |
| ! | CTTATGTTTAATTGAGTTCA+AGG | - | chr3_3:84195035-84195054 | Msa0479260:CDS | 25.0% |
| AAGTTGAAGACAGACAAAAA+TGG | - | chr3_3:84193538-84193557 | Msa0479260:intron | 30.0% | |
| !! | TAGTTGATTTTACTGCTTCT+TGG | - | chr3_3:84193804-84193823 | Msa0479260:intron | 30.0% |
| TACGTGACATGACATTATTA+TGG | - | chr3_3:84193951-84193970 | Msa0479260:intron | 30.0% | |
| GTTCTTCTAGATTAATCTTC+AGG | + | chr3_3:84193992-84194011 | None:intergenic | 30.0% | |
| TAATAAGACTGAGCTGAATT+CGG | - | chr3_3:84194149-84194168 | Msa0479260:intron | 30.0% | |
| ATAACTTAGAACTCATCCAT+GGG | + | chr3_3:84194547-84194566 | None:intergenic | 30.0% | |
| TCTTATGCTATCATAGATTG+TGG | - | chr3_3:84194577-84194596 | Msa0479260:intron | 30.0% | |
| AAGTTGAAGACAGACAAAAA+TGG | - | chr3_3:84193538-84193557 | Msa0479260:intron | 30.0% | |
| !! | TAGTTGATTTTACTGCTTCT+TGG | - | chr3_3:84193804-84193823 | Msa0479260:intron | 30.0% |
| TACGTGACATGACATTATTA+TGG | - | chr3_3:84193951-84193970 | Msa0479260:intron | 30.0% | |
| GTTCTTCTAGATTAATCTTC+AGG | + | chr3_3:84193992-84194011 | None:intergenic | 30.0% | |
| TAATAAGACTGAGCTGAATT+CGG | - | chr3_3:84194149-84194168 | Msa0479260:intron | 30.0% | |
| ATAACTTAGAACTCATCCAT+GGG | + | chr3_3:84194547-84194566 | None:intergenic | 30.0% | |
| TCTTATGCTATCATAGATTG+TGG | - | chr3_3:84194577-84194596 | Msa0479260:intron | 30.0% | |
| TTGAAGACAGACAAAAATGG+CGG | - | chr3_3:84193541-84193560 | Msa0479260:intron | 35.0% | |
| GATTTAACCAACCAGTTTGT+TGG | + | chr3_3:84193636-84193655 | None:intergenic | 35.0% | |
| TAAGGATGGGAAATATGAGA+AGG | + | chr3_3:84193658-84193677 | None:intergenic | 35.0% | |
| GCAACAGTCTGAAGAAATTA+GGG | + | chr3_3:84194051-84194070 | None:intergenic | 35.0% | |
| AGCAACAGTCTGAAGAAATT+AGG | + | chr3_3:84194052-84194071 | None:intergenic | 35.0% | |
| TCTTTCAAGAACAGGAATGT+CGG | + | chr3_3:84194099-84194118 | None:intergenic | 35.0% | |
| ACATTCCTGTTCTTGAAAGA+AGG | - | chr3_3:84194099-84194118 | Msa0479260:intron | 35.0% | |
| AATAAGACTGAGCTGAATTC+GGG | - | chr3_3:84194150-84194169 | Msa0479260:intron | 35.0% | |
| ! | TTTTTATATGTGAGACCGGA+CGG | + | chr3_3:84194190-84194209 | None:intergenic | 35.0% |
| TGAATGTCAGCTTAGCAAAA+TGG | + | chr3_3:84194419-84194438 | None:intergenic | 35.0% | |
| TGTTGCATTTACCTTTCACT+TGG | - | chr3_3:84194453-84194472 | Msa0479260:intron | 35.0% | |
| CATTATATTTCTCTTGCCCA+TGG | - | chr3_3:84194528-84194547 | Msa0479260:CDS | 35.0% | |
| CATAACTTAGAACTCATCCA+TGG | + | chr3_3:84194548-84194567 | None:intergenic | 35.0% | |
| !! | CATGGATGAGTTCTAAGTTA+TGG | - | chr3_3:84194546-84194565 | Msa0479260:intron | 35.0% |
| TTGTGGTTGTGAATTGTGAT+AGG | - | chr3_3:84194594-84194613 | Msa0479260:intron | 35.0% | |
| ! | CATCTACAAATTTTCAGCAG+AGG | + | chr3_3:84194625-84194644 | None:intergenic | 35.0% |
| TTGAAGACAGACAAAAATGG+CGG | - | chr3_3:84193541-84193560 | Msa0479260:intron | 35.0% | |
| GATTTAACCAACCAGTTTGT+TGG | + | chr3_3:84193636-84193655 | None:intergenic | 35.0% | |
| TAAGGATGGGAAATATGAGA+AGG | + | chr3_3:84193658-84193677 | None:intergenic | 35.0% | |
| GCAACAGTCTGAAGAAATTA+GGG | + | chr3_3:84194051-84194070 | None:intergenic | 35.0% | |
| AGCAACAGTCTGAAGAAATT+AGG | + | chr3_3:84194052-84194071 | None:intergenic | 35.0% | |
| TCTTTCAAGAACAGGAATGT+CGG | + | chr3_3:84194099-84194118 | None:intergenic | 35.0% | |
| ACATTCCTGTTCTTGAAAGA+AGG | - | chr3_3:84194099-84194118 | Msa0479260:intron | 35.0% | |
| AATAAGACTGAGCTGAATTC+GGG | - | chr3_3:84194150-84194169 | Msa0479260:intron | 35.0% | |
| ! | TTTTTATATGTGAGACCGGA+CGG | + | chr3_3:84194190-84194209 | None:intergenic | 35.0% |
| TGAATGTCAGCTTAGCAAAA+TGG | + | chr3_3:84194419-84194438 | None:intergenic | 35.0% | |
| TGTTGCATTTACCTTTCACT+TGG | - | chr3_3:84194453-84194472 | Msa0479260:intron | 35.0% | |
| CATTATATTTCTCTTGCCCA+TGG | - | chr3_3:84194528-84194547 | Msa0479260:CDS | 35.0% | |
| CATAACTTAGAACTCATCCA+TGG | + | chr3_3:84194548-84194567 | None:intergenic | 35.0% | |
| !! | CATGGATGAGTTCTAAGTTA+TGG | - | chr3_3:84194546-84194565 | Msa0479260:intron | 35.0% |
| TTGTGGTTGTGAATTGTGAT+AGG | - | chr3_3:84194594-84194613 | Msa0479260:intron | 35.0% | |
| ! | CATCTACAAATTTTCAGCAG+AGG | + | chr3_3:84194625-84194644 | None:intergenic | 35.0% |
| GATTGAAATCCACAGTGTTG+AGG | - | chr3_3:84193577-84193596 | Msa0479260:intron | 40.0% | |
| TTGGAACGAACAAATCCAGA+AGG | - | chr3_3:84193601-84193620 | Msa0479260:intron | 40.0% | |
| TGGAACGAACAAATCCAGAA+GGG | - | chr3_3:84193602-84193621 | Msa0479260:intron | 40.0% | |
| AATGACTCCAACAAACTGGT+TGG | - | chr3_3:84193626-84193645 | Msa0479260:intron | 40.0% | |
| ! | GATTTTACTGCTTCTTGGTG+TGG | - | chr3_3:84193809-84193828 | Msa0479260:intron | 40.0% |
| CGAAAAATGGGGCAATGAAA+CGG | + | chr3_3:84193841-84193860 | None:intergenic | 40.0% | |
| ATTCATCCACGTCAACCTTA+AGG | + | chr3_3:84193898-84193917 | None:intergenic | 40.0% | |
| ATTTCTTCAGACTGTTGCTG+AGG | - | chr3_3:84194053-84194072 | Msa0479260:intron | 40.0% | |
| GCTTTCCTTCTTTCAAGAAC+AGG | + | chr3_3:84194107-84194126 | None:intergenic | 40.0% | |
| AGAAGGAAAGCTAGTGAACA+AGG | - | chr3_3:84194116-84194135 | Msa0479260:intron | 40.0% | |
| AAAGCTAGTGAACAAGGTTG+TGG | - | chr3_3:84194122-84194141 | Msa0479260:intron | 40.0% | |
| AAGCTAGTGAACAAGGTTGT+GGG | - | chr3_3:84194123-84194142 | Msa0479260:intron | 40.0% | |
| AAACTGACTGCCTCTAACAA+TGG | - | chr3_3:84194679-84194698 | Msa0479260:intron | 40.0% | |
| ATGGTTTCCTCCATTGTTAG+AGG | + | chr3_3:84194692-84194711 | None:intergenic | 40.0% | |
| TGAGATGGATACTCATGAGT+AGG | + | chr3_3:84194909-84194928 | None:intergenic | 40.0% | |
| GATTGAAATCCACAGTGTTG+AGG | - | chr3_3:84193577-84193596 | Msa0479260:intron | 40.0% | |
| TTGGAACGAACAAATCCAGA+AGG | - | chr3_3:84193601-84193620 | Msa0479260:intron | 40.0% | |
| TGGAACGAACAAATCCAGAA+GGG | - | chr3_3:84193602-84193621 | Msa0479260:intron | 40.0% | |
| AATGACTCCAACAAACTGGT+TGG | - | chr3_3:84193626-84193645 | Msa0479260:intron | 40.0% | |
| ! | GATTTTACTGCTTCTTGGTG+TGG | - | chr3_3:84193809-84193828 | Msa0479260:intron | 40.0% |
| CGAAAAATGGGGCAATGAAA+CGG | + | chr3_3:84193841-84193860 | None:intergenic | 40.0% | |
| ATTCATCCACGTCAACCTTA+AGG | + | chr3_3:84193898-84193917 | None:intergenic | 40.0% | |
| ATTTCTTCAGACTGTTGCTG+AGG | - | chr3_3:84194053-84194072 | Msa0479260:intron | 40.0% | |
| GCTTTCCTTCTTTCAAGAAC+AGG | + | chr3_3:84194107-84194126 | None:intergenic | 40.0% | |
| AGAAGGAAAGCTAGTGAACA+AGG | - | chr3_3:84194116-84194135 | Msa0479260:intron | 40.0% | |
| AAAGCTAGTGAACAAGGTTG+TGG | - | chr3_3:84194122-84194141 | Msa0479260:intron | 40.0% | |
| AAGCTAGTGAACAAGGTTGT+GGG | - | chr3_3:84194123-84194142 | Msa0479260:intron | 40.0% | |
| AAACTGACTGCCTCTAACAA+TGG | - | chr3_3:84194679-84194698 | Msa0479260:intron | 40.0% | |
| ATGGTTTCCTCCATTGTTAG+AGG | + | chr3_3:84194692-84194711 | None:intergenic | 40.0% | |
| TGAGATGGATACTCATGAGT+AGG | + | chr3_3:84194909-84194928 | None:intergenic | 40.0% | |
| ! | CAGACAAAAATGGCGGAAGA+AGG | - | chr3_3:84193548-84193567 | Msa0479260:intron | 45.0% |
| ! | AAATCCACAGTGTTGAGGCT+TGG | - | chr3_3:84193582-84193601 | Msa0479260:intron | 45.0% |
| TGTTGGAGTCATTTCCCTTC+TGG | + | chr3_3:84193619-84193638 | None:intergenic | 45.0% | |
| GGGAAATGACTCCAACAAAC+TGG | - | chr3_3:84193622-84193641 | Msa0479260:intron | 45.0% | |
| AGCCAACTCTGCGAAAAATG+GGG | + | chr3_3:84193852-84193871 | None:intergenic | 45.0% | |
| GAGCCAACTCTGCGAAAAAT+GGG | + | chr3_3:84193853-84193872 | None:intergenic | 45.0% | |
| TGAGCCAACTCTGCGAAAAA+TGG | + | chr3_3:84193854-84193873 | None:intergenic | 45.0% | |
| ACCTTAAGGAAGGTGACATC+TGG | + | chr3_3:84193884-84193903 | None:intergenic | 45.0% | |
| ATCCACGTCAACCTTAAGGA+AGG | + | chr3_3:84193894-84193913 | None:intergenic | 45.0% | |
| GAGTAGATAAGTACTCCGTC+CGG | - | chr3_3:84194172-84194191 | Msa0479260:intron | 45.0% | |
| CATGAGTATCCATCTCAACC+CGG | - | chr3_3:84194912-84194931 | Msa0479260:intron | 45.0% | |
| CGACTTTCCTCGTTAAGGTT+GGG | + | chr3_3:84194938-84194957 | None:intergenic | 45.0% | |
| CCAACCTTAACGAGGAAAGT+CGG | - | chr3_3:84194936-84194955 | Msa0479260:intron | 45.0% | |
| CAATCCGACTTTCCTCGTTA+AGG | + | chr3_3:84194943-84194962 | None:intergenic | 45.0% | |
| ! | CAGACAAAAATGGCGGAAGA+AGG | - | chr3_3:84193548-84193567 | Msa0479260:intron | 45.0% |
| ! | AAATCCACAGTGTTGAGGCT+TGG | - | chr3_3:84193582-84193601 | Msa0479260:intron | 45.0% |
| TGTTGGAGTCATTTCCCTTC+TGG | + | chr3_3:84193619-84193638 | None:intergenic | 45.0% | |
| GGGAAATGACTCCAACAAAC+TGG | - | chr3_3:84193622-84193641 | Msa0479260:intron | 45.0% | |
| AGCCAACTCTGCGAAAAATG+GGG | + | chr3_3:84193852-84193871 | None:intergenic | 45.0% | |
| GAGCCAACTCTGCGAAAAAT+GGG | + | chr3_3:84193853-84193872 | None:intergenic | 45.0% | |
| TGAGCCAACTCTGCGAAAAA+TGG | + | chr3_3:84193854-84193873 | None:intergenic | 45.0% | |
| ACCTTAAGGAAGGTGACATC+TGG | + | chr3_3:84193884-84193903 | None:intergenic | 45.0% | |
| ATCCACGTCAACCTTAAGGA+AGG | + | chr3_3:84193894-84193913 | None:intergenic | 45.0% | |
| GAGTAGATAAGTACTCCGTC+CGG | - | chr3_3:84194172-84194191 | Msa0479260:intron | 45.0% | |
| CATGAGTATCCATCTCAACC+CGG | - | chr3_3:84194912-84194931 | Msa0479260:intron | 45.0% | |
| CGACTTTCCTCGTTAAGGTT+GGG | + | chr3_3:84194938-84194957 | None:intergenic | 45.0% | |
| CCAACCTTAACGAGGAAAGT+CGG | - | chr3_3:84194936-84194955 | Msa0479260:intron | 45.0% | |
| CAATCCGACTTTCCTCGTTA+AGG | + | chr3_3:84194943-84194962 | None:intergenic | 45.0% | |
| AATGGGGCAATGAAACGGCA+TGG | + | chr3_3:84193836-84193855 | None:intergenic | 50.0% | |
| !! | TGCCCCATTTTTCGCAGAGT+TGG | - | chr3_3:84193847-84193866 | Msa0479260:intron | 50.0% |
| ! | TCGCAGAGTTGGCTCAAAAG+CGG | - | chr3_3:84193858-84193877 | Msa0479260:intron | 50.0% |
| GCCAGATGTCACCTTCCTTA+AGG | - | chr3_3:84193880-84193899 | Msa0479260:intron | 50.0% | |
| CACCTTCCTTAAGGTTGACG+TGG | - | chr3_3:84193889-84193908 | Msa0479260:intron | 50.0% | |
| TTCAGACTGTTGCTGAGGAG+TGG | - | chr3_3:84194058-84194077 | Msa0479260:intron | 50.0% | |
| TCAGACTGTTGCTGAGGAGT+GGG | - | chr3_3:84194059-84194078 | Msa0479260:intron | 50.0% | |
| CAAGAACAGGAATGTCGGCA+TGG | + | chr3_3:84194094-84194113 | None:intergenic | 50.0% | |
| CTAGTGAACAAGGTTGTGGG+TGG | - | chr3_3:84194126-84194145 | Msa0479260:intron | 50.0% | |
| CTGACTGCCTCTAACAATGG+AGG | - | chr3_3:84194682-84194701 | Msa0479260:intron | 50.0% | |
| TTTCCTCGTTAAGGTTGGGC+CGG | + | chr3_3:84194934-84194953 | None:intergenic | 50.0% | |
| CCGACTTTCCTCGTTAAGGT+TGG | + | chr3_3:84194939-84194958 | None:intergenic | 50.0% | |
| AATGGGGCAATGAAACGGCA+TGG | + | chr3_3:84193836-84193855 | None:intergenic | 50.0% | |
| !! | TGCCCCATTTTTCGCAGAGT+TGG | - | chr3_3:84193847-84193866 | Msa0479260:intron | 50.0% |
| ! | TCGCAGAGTTGGCTCAAAAG+CGG | - | chr3_3:84193858-84193877 | Msa0479260:intron | 50.0% |
| GCCAGATGTCACCTTCCTTA+AGG | - | chr3_3:84193880-84193899 | Msa0479260:intron | 50.0% | |
| CACCTTCCTTAAGGTTGACG+TGG | - | chr3_3:84193889-84193908 | Msa0479260:intron | 50.0% | |
| TTCAGACTGTTGCTGAGGAG+TGG | - | chr3_3:84194058-84194077 | Msa0479260:intron | 50.0% | |
| TCAGACTGTTGCTGAGGAGT+GGG | - | chr3_3:84194059-84194078 | Msa0479260:intron | 50.0% | |
| CAAGAACAGGAATGTCGGCA+TGG | + | chr3_3:84194094-84194113 | None:intergenic | 50.0% | |
| CTAGTGAACAAGGTTGTGGG+TGG | - | chr3_3:84194126-84194145 | Msa0479260:intron | 50.0% | |
| CTGACTGCCTCTAACAATGG+AGG | - | chr3_3:84194682-84194701 | Msa0479260:intron | 50.0% | |
| TTTCCTCGTTAAGGTTGGGC+CGG | + | chr3_3:84194934-84194953 | None:intergenic | 50.0% | |
| CCGACTTTCCTCGTTAAGGT+TGG | + | chr3_3:84194939-84194958 | None:intergenic | 50.0% | |
| CGTTCCAAGCCTCAACACTG+TGG | + | chr3_3:84193589-84193608 | None:intergenic | 55.0% | |
| TTCCTCGTTAAGGTTGGGCC+GGG | + | chr3_3:84194933-84194952 | None:intergenic | 55.0% | |
| CTAACGATGACAACGTGGCG+AGG | + | chr3_3:84195071-84195090 | None:intergenic | 55.0% | |
| CGTTCCAAGCCTCAACACTG+TGG | + | chr3_3:84193589-84193608 | None:intergenic | 55.0% | |
| TTCCTCGTTAAGGTTGGGCC+GGG | + | chr3_3:84194933-84194952 | None:intergenic | 55.0% | |
| CTAACGATGACAACGTGGCG+AGG | + | chr3_3:84195071-84195090 | None:intergenic | 55.0% | |
| ! | AAGGTTGGGCCGGGTTGAGA+TGG | + | chr3_3:84194924-84194943 | None:intergenic | 60.0% |
| AACCCGGCCCAACCTTAACG+AGG | - | chr3_3:84194928-84194947 | Msa0479260:intron | 60.0% | |
| ! | AAGGTTGGGCCGGGTTGAGA+TGG | + | chr3_3:84194924-84194943 | None:intergenic | 60.0% |
| AACCCGGCCCAACCTTAACG+AGG | - | chr3_3:84194928-84194947 | Msa0479260:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 84193522 | 84195090 | 84193522 | ID=Msa0479260;Name=Msa0479260 |
| chr3_3 | mRNA | 84193522 | 84195090 | 84193522 | ID=Msa0479260-mRNA-1;Parent=Msa0479260;Name=Msa0479260-mRNA-1;_AED=0.45;_eAED=0.45;_QI=35|0.66|0.5|0.75|0.66|0.5|4|0|95 |
| chr3_3 | exon | 84193522 | 84193555 | 84193522 | ID=Msa0479260-mRNA-1:exon:23900;Parent=Msa0479260-mRNA-1 |
| chr3_3 | exon | 84194506 | 84194549 | 84194506 | ID=Msa0479260-mRNA-1:exon:23899;Parent=Msa0479260-mRNA-1 |
| chr3_3 | exon | 84194690 | 84194812 | 84194690 | ID=Msa0479260-mRNA-1:exon:23898;Parent=Msa0479260-mRNA-1 |
| chr3_3 | exon | 84194969 | 84195090 | 84194969 | ID=Msa0479260-mRNA-1:exon:23897;Parent=Msa0479260-mRNA-1 |
| chr3_3 | five_prime_UTR | 84195056 | 84195090 | 84195056 | ID=Msa0479260-mRNA-1:five_prime_utr;Parent=Msa0479260-mRNA-1 |
| chr3_3 | CDS | 84194969 | 84195055 | 84194969 | ID=Msa0479260-mRNA-1:cds;Parent=Msa0479260-mRNA-1 |
| chr3_3 | CDS | 84194690 | 84194812 | 84194690 | ID=Msa0479260-mRNA-1:cds;Parent=Msa0479260-mRNA-1 |
| chr3_3 | CDS | 84194506 | 84194549 | 84194506 | ID=Msa0479260-mRNA-1:cds;Parent=Msa0479260-mRNA-1 |
| chr3_3 | CDS | 84193522 | 84193555 | 84193522 | ID=Msa0479260-mRNA-1:cds;Parent=Msa0479260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
