AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1202470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1202470 MtrunA17_Chr8g0372551 99.790 476 1 0 1 476 1 476 0.0 962
Msa1202470 MtrunA17_Chr8g0359731 99.370 476 3 0 1 476 1 476 0.0 961
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1202470 AT2G34250.2 93.697 476 29 1 1 476 1 475 0.0 912
Msa1202470 AT2G34250.3 93.697 476 29 1 1 476 1 475 0.0 912
Msa1202470 AT2G34250.1 93.697 476 29 1 1 476 1 475 0.0 912
Msa1202470 AT1G29310.1 93.487 476 30 1 1 476 1 475 0.0 911
Msa1202470 AT1G29310.2 93.487 476 30 1 1 476 1 475 0.0 911
Msa1202470 AT1G78720.2 91.368 475 40 1 1 475 1 474 0.0 890
Msa1202470 AT1G78720.1 91.368 475 40 1 1 475 1 474 0.0 890
Msa1202470 AT1G78720.3 90.947 475 40 2 1 475 1 472 0.0 881

Find 158 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGATGGGTGGTGGGTTT+AGG 0.136040 8_1:+56103049 Msa1202470:exon
GCAGTTGCCTATGTTCTTTC+AGG 0.146561 8_1:+56103956 Msa1202470:CDS
GCAAGTCAAAAGGCAATTTA+TGG 0.173483 8_1:-56106557 None:intergenic
CGAGCATTCTTTGACCTTAC+AGG 0.193127 8_1:-56104509 None:intergenic
ATCACTCCTATTGTCACTTC+TGG 0.196349 8_1:+56103300 Msa1202470:CDS
GCCAGTGAGCTTGGCTTCTT+TGG 0.202385 8_1:+56106151 Msa1202470:CDS
TAAGATGGGTGGTGGGTTTA+GGG 0.208117 8_1:+56103050 Msa1202470:exon
TGGGCTGGTCATGCAGCTTT+TGG 0.236232 8_1:+56103320 Msa1202470:CDS
TTTACAGTGAAAACATTATA+TGG 0.278546 8_1:+56104270 Msa1202470:intron
AGCTCCACGTCCACTGTTAA+TGG 0.280671 8_1:-56104312 None:intergenic
AACAGTTGACTACAATTAAA+AGG 0.281121 8_1:+56102564 Msa1202470:five_prime_UTR
TGTAGTCAGCTTCCTCTATA+TGG 0.291177 8_1:+56103192 Msa1202470:CDS
TTAGATGAGCTTCTTCAAAA+AGG 0.307998 8_1:+56104067 Msa1202470:CDS
TATATGACCTTCTCTCTAAA+TGG 0.311984 8_1:-56103138 None:intergenic
ACTATATCACTGCGCCTTCC+AGG 0.327568 8_1:+56104820 Msa1202470:CDS
CTGTCAGCAGTCTGAACTTC+GGG 0.330487 8_1:-56103108 None:intergenic
CTTGGAAGTATATCACAATT+AGG 0.332365 8_1:-56104469 None:intergenic
AAAGGATATGGTCTTGGTTC+GGG 0.354944 8_1:+56104085 Msa1202470:CDS
AAAACTACTCTTTGTCTTCA+AGG 0.356808 8_1:-56106237 None:intergenic
AAGAGCAGACTGAAGAATAA+TGG 0.359294 8_1:-56104582 None:intergenic
TCGTAAATCTGTTGGGGAAA+TGG 0.359545 8_1:+56104745 Msa1202470:CDS
TTTATGGATTTAAGCATTGC+TGG 0.363607 8_1:-56106541 None:intergenic
AGATATTAGTCGCTATGAAT+AGG 0.367590 8_1:-56104114 None:intergenic
TTTATGGGAGCAATAGGTTC+AGG 0.371834 8_1:+56106064 Msa1202470:CDS
GAGGTATAGAACAGTTTGAT+TGG 0.375522 8_1:-56104551 None:intergenic
CTTTCTGCAAGTTTGATTCA+CGG 0.396011 8_1:-56105967 None:intergenic
AAAAGGATATGGTCTTGGTT+CGG 0.400084 8_1:+56104084 Msa1202470:CDS
AACTTCATCGTAAATCTGTT+GGG 0.400705 8_1:+56104738 Msa1202470:CDS
AAATGGAAGGAATCTGAATA+TGG 0.402051 8_1:+56104762 Msa1202470:CDS
TATTCATAGCGACTAATATC+TGG 0.405102 8_1:+56104116 Msa1202470:CDS
CAGGTGCAGATCCGTTCTAT+TGG 0.409468 8_1:+56103229 Msa1202470:CDS
GATATTAGTCGCTATGAATA+GGG 0.410097 8_1:-56104113 None:intergenic
ATCCCCACTGCTGCAGCATT+CGG 0.412466 8_1:+56106004 Msa1202470:CDS
CTGAAAGAAAATAGCAGAAC+GGG 0.412702 8_1:-56102642 None:intergenic
CAACAATGTGCGAGAGGATC+GGG 0.412985 8_1:+56103368 Msa1202470:CDS
GCATTCGGAGGCATTTGTAT+TGG 0.413794 8_1:+56106019 Msa1202470:CDS
CAGTTGCCTATGTTCTTTCA+GGG 0.417256 8_1:+56103957 Msa1202470:CDS
GTGCCTTGTTCTCTAAAACT+TGG 0.421361 8_1:+56105022 Msa1202470:CDS
TCCTATTGTCACTTCTGGGC+TGG 0.425191 8_1:+56103305 Msa1202470:CDS
TATGTTCTTTCAGGGATGTA+TGG 0.425856 8_1:+56103965 Msa1202470:CDS
TCACTCCTATTGTCACTTCT+GGG 0.432697 8_1:+56103301 Msa1202470:CDS
AAAGTGAGACAGGTTAGTTA+TGG 0.435537 8_1:+56106380 Msa1202470:three_prime_UTR
GAATTTGCAGGAACAACAAA+TGG 0.436694 8_1:+56105931 Msa1202470:intron
AGAGCAGACTGAAGAATAAT+GGG 0.438369 8_1:-56104581 None:intergenic
CGTGGAACTGTCATGGAGCT+TGG 0.440078 8_1:+56103276 Msa1202470:CDS
GCAAGGAGATTTGTCACATT+GGG 0.440920 8_1:-56104431 None:intergenic
CTGTTCTAGTTATCAACAAA+TGG 0.444560 8_1:-56104364 None:intergenic
CTGGGAGATAAAGTAGAGAT+TGG 0.445182 8_1:-56104609 None:intergenic
TAGTTTGATAAGATGGGTGG+TGG 0.446861 8_1:+56103042 Msa1202470:exon
AGGTCTCTGGTTCATCTGCT+AGG 0.447601 8_1:+56105049 Msa1202470:CDS
AAAACTTGGATTGAGGTCTC+TGG 0.449518 8_1:+56105036 Msa1202470:CDS
GTAGTCAGCTTCCTCTATAT+GGG 0.450305 8_1:+56103193 Msa1202470:CDS
GGAGCAATAGGTTCAGGGAC+AGG 0.451698 8_1:+56106070 Msa1202470:CDS
ACGTCCACTGTTAATGGTGG+TGG 0.452014 8_1:-56104306 None:intergenic
AAAGAATGCTCGTGGACAGC+AGG 0.458072 8_1:+56104520 Msa1202470:CDS
TGACTACAATTAAAAGGAAA+AGG 0.466342 8_1:+56102570 Msa1202470:five_prime_UTR
CGGGAAGACGACGAAGATCC+CGG 0.469567 8_1:-56102623 None:intergenic
TTCAGGGATGTATGGTAGTG+TGG 0.482405 8_1:+56103973 Msa1202470:CDS
AAACTTCATCGTAAATCTGT+TGG 0.487952 8_1:+56104737 Msa1202470:CDS
TATGGGATACACTCGACAAC+AGG 0.491096 8_1:+56103210 Msa1202470:CDS
GTTCTCTAAAACTTGGATTG+AGG 0.493225 8_1:+56105029 Msa1202470:CDS
CCTCCGAATGCTGCAGCAGT+GGG 0.494724 8_1:-56106007 None:intergenic
GCAAAACCACACGGAAACCT+TGG 0.494750 8_1:-56104487 None:intergenic
ACCAAAGAAGCCAAGCTCAC+TGG 0.495667 8_1:-56106152 None:intergenic
TGAAGTTTCCACTGTACTTA+CGG 0.495825 8_1:-56104722 None:intergenic
AAGTTTGATTCACGGTGTCC+AGG 0.496226 8_1:-56105959 None:intergenic
CAATCTCTACTTTATCTCCC+AGG 0.496621 8_1:+56104610 Msa1202470:CDS
CCATAGGTTAAAAGTGAGAC+AGG 0.502432 8_1:+56106370 Msa1202470:three_prime_UTR
CCTGTCAGCAGTCTGAACTT+CGG 0.503278 8_1:-56103109 None:intergenic
AACGGAGCACAGAAGCTACT+TGG 0.503865 8_1:+56103911 Msa1202470:CDS
TACCACCATGGCAGCACTCA+TGG 0.505896 8_1:-56106428 None:intergenic
TTATGGGAGCAATAGGTTCA+GGG 0.506128 8_1:+56106065 Msa1202470:CDS
AAGAATAATGGGCATGTTGG+AGG 0.506203 8_1:-56104570 None:intergenic
TATGGTAGTGTGGGCCAACT+TGG 0.506306 8_1:+56103983 Msa1202470:CDS
CTGATATCTCTCCACTCACC+CGG 0.514387 8_1:+56102604 Msa1202470:five_prime_UTR
ATTGACATAGTTTGATAAGA+TGG 0.514812 8_1:+56103035 Msa1202470:exon
CTGAAGAATAATGGGCATGT+TGG 0.515561 8_1:-56104573 None:intergenic
GCCTCCGAATGCTGCAGCAG+TGG 0.517678 8_1:-56106008 None:intergenic
CCAAAACAAAAGTAATTGCT+TGG 0.521064 8_1:-56106187 None:intergenic
GTCGAGTGTATCCCATATAG+AGG 0.521776 8_1:-56103204 None:intergenic
TAGTATGCAATACCACCAAC+GGG 0.525397 8_1:-56104801 None:intergenic
TTGACATAGTTTGATAAGAT+GGG 0.527691 8_1:+56103036 Msa1202470:exon
GTACTTTGAAACATTTGAGA+AGG 0.527766 8_1:+56106123 Msa1202470:CDS
GGATGTTGCAAAGCAATTGA+AGG 0.529914 8_1:+56105071 Msa1202470:CDS
AGGATCTGAAGTACAGTACA+AGG 0.531459 8_1:-56106217 None:intergenic
CTGCAGCAGTGGGGATGTAT+CGG 0.533364 8_1:-56105997 None:intergenic
TTATGGATTTAAGCATTGCT+GGG 0.535715 8_1:-56106540 None:intergenic
ACCAGCCCAGAAGTGACAAT+AGG 0.537532 8_1:-56103306 None:intergenic
GAACAACAAATGGTGATGCC+TGG 0.539031 8_1:+56105941 Msa1202470:CDS
CTAATTGTGATATACTTCCA+AGG 0.539046 8_1:+56104470 Msa1202470:CDS
GGTCTCTGGTTCATCTGCTA+GGG 0.539177 8_1:+56105050 Msa1202470:CDS
ACAACAATGTGCGAGAGGAT+CGG 0.542537 8_1:+56103367 Msa1202470:CDS
GGTCACTCAATTCCCGTTGG+TGG 0.543937 8_1:+56104789 Msa1202470:CDS
TCAGGGATGTATGGTAGTGT+GGG 0.544571 8_1:+56103974 Msa1202470:CDS
CCGAAGTTCAGACTGCTGAC+AGG 0.544729 8_1:+56103109 Msa1202470:CDS
GAACAAAGCATGGAAAGGAT+TGG 0.546371 8_1:-56104974 None:intergenic
CAGTTCCACGGTTTGAAGCA+AGG 0.547496 8_1:-56103263 None:intergenic
GATCAGACTTCATGTGTTCA+AGG 0.548278 8_1:-56106347 None:intergenic
CAGTGAAAACATTATATGGA+AGG 0.562189 8_1:+56104274 Msa1202470:intron
AGTTTGATAAGATGGGTGGT+GGG 0.564289 8_1:+56103043 Msa1202470:exon
AGCAAGGAGATTTGTCACAT+TGG 0.565195 8_1:-56104432 None:intergenic
AAATCTGTTGGGGAAATGGA+AGG 0.566664 8_1:+56104749 Msa1202470:CDS
GAGCAATAGGTTCAGGGACA+GGG 0.568251 8_1:+56106071 Msa1202470:CDS
TAGCATTTCCCACTCCAAGT+TGG 0.570311 8_1:-56103997 None:intergenic
GGACGTGGAGCTGAGTTTGA+AGG 0.571398 8_1:+56104323 Msa1202470:CDS
TATTGGTGCTCTGACAGTGT+TGG 0.574451 8_1:+56106036 Msa1202470:CDS
TCGGGAAGGAACGAGAGAAA+CGG 0.578024 8_1:-56103090 None:intergenic
CCCACTGCTGCAGCATTCGG+AGG 0.578252 8_1:+56106007 Msa1202470:CDS
TCACATTGGGAAGATTCTGC+CGG 0.580213 8_1:-56104418 None:intergenic
CAAGCTCCATGACAGTTCCA+CGG 0.581913 8_1:-56103275 None:intergenic
CTACAATTAAAAGGAAAAGG+AGG 0.583867 8_1:+56102573 Msa1202470:five_prime_UTR
GGGAAGACGACGAAGATCCC+GGG 0.585153 8_1:-56102622 None:intergenic
GAACATGTCTCTTACCTGGA+AGG 0.587398 8_1:-56104834 None:intergenic
GTTATCCTTGCTTCAAACCG+TGG 0.587811 8_1:+56103258 Msa1202470:CDS
AAACAAAAGTAATTGCTTGG+CGG 0.588005 8_1:-56106184 None:intergenic
TGGATCAAAGATTATTGAAG+TGG 0.589065 8_1:+56103344 Msa1202470:CDS
TACAATTAAAAGGAAAAGGA+GGG 0.589599 8_1:+56102574 Msa1202470:five_prime_UTR
ACACAAGATAGAACAAAGCA+TGG 0.593205 8_1:-56104984 None:intergenic
CGTCCACTGTTAATGGTGGT+GGG 0.594920 8_1:-56104305 None:intergenic
TTCAAACCGTGGAACTGTCA+TGG 0.595719 8_1:+56103269 Msa1202470:CDS
ATACATCCCTGAAAGAACAT+AGG 0.595738 8_1:-56103963 None:intergenic
ATAGTATGCAATACCACCAA+CGG 0.597455 8_1:-56104802 None:intergenic
ACCTTACAGGCAAAACCACA+CGG 0.598007 8_1:-56104496 None:intergenic
GTTATGGAAGCAGCCGTGTG+TGG 0.598348 8_1:+56106396 Msa1202470:three_prime_UTR
ACTTCATCGTAAATCTGTTG+GGG 0.598993 8_1:+56104739 Msa1202470:CDS
ACCACCATTAACAGTGGACG+TGG 0.603265 8_1:+56104308 Msa1202470:CDS
TGATATCTCTCCACTCACCC+GGG 0.605563 8_1:+56102605 Msa1202470:five_prime_UTR
GAAAGTGCCATTTAGAGAGA+AGG 0.605927 8_1:+56103131 Msa1202470:CDS
AGATAGAACAAAGCATGGAA+AGG 0.607824 8_1:-56104979 None:intergenic
TAGTGTGGGCCAACTTGGAG+TGG 0.608290 8_1:+56103988 Msa1202470:CDS
CCTGAAAGAAAATAGCAGAA+CGG 0.612825 8_1:-56102643 None:intergenic
GTAAGGTCAAAGAATGCTCG+TGG 0.613013 8_1:+56104512 Msa1202470:CDS
AAGGAATCTGAATATGGAGG+TGG 0.616063 8_1:+56104768 Msa1202470:CDS
ATTATCCATGAGTGCTGCCA+TGG 0.623885 8_1:+56106423 Msa1202470:three_prime_UTR
CAAGGTTCGTGCTCTTCGTG+AGG 0.624324 8_1:+56104388 Msa1202470:CDS
AGTGTGGGCCAACTTGGAGT+GGG 0.625808 8_1:+56103989 Msa1202470:CDS
AGATAACAAAGCTCTTTCAA+AGG 0.626410 8_1:-56106463 None:intergenic
AAGAATGCTCGTGGACAGCA+GGG 0.628905 8_1:+56104521 Msa1202470:CDS
GGTGGTCACTCAATTCCCGT+TGG 0.629347 8_1:+56104786 Msa1202470:CDS
GGAAGATCAAGACAGTAGCA+AGG 0.630553 8_1:-56104448 None:intergenic
CAGCAGTCTGAACTTCGGGA+AGG 0.631153 8_1:-56103104 None:intergenic
TGGAAGGAATCTGAATATGG+AGG 0.634041 8_1:+56104765 Msa1202470:CDS
AAAAGAGCTGGACAATGATG+AGG 0.635714 8_1:-56104021 None:intergenic
CTTCTCCACCGTAAGTACAG+TGG 0.641971 8_1:+56104714 Msa1202470:CDS
TCATGTGAAAACTACCACCA+TGG 0.648918 8_1:-56106440 None:intergenic
TCCACGTCCACTGTTAATGG+TGG 0.651847 8_1:-56104309 None:intergenic
ATAACACGCATCCAATAGAA+CGG 0.657362 8_1:-56103240 None:intergenic
GTTGATAACTAGAACAGACA+AGG 0.670921 8_1:+56104370 Msa1202470:CDS
ATGGATAATTATACCACACA+CGG 0.673746 8_1:-56106409 None:intergenic
AGTCCCACCACCATTAACAG+TGG 0.677883 8_1:+56104302 Msa1202470:CDS
AGTGGACAACAATGTGCGAG+AGG 0.687698 8_1:+56103362 Msa1202470:CDS
GGATCTGAAGTACAGTACAA+GGG 0.696732 8_1:-56106216 None:intergenic
ATACTTCCAAGGTTTCCGTG+TGG 0.697491 8_1:+56104481 Msa1202470:CDS
ACATAGTTTGATAAGATGGG+TGG 0.698995 8_1:+56103039 Msa1202470:exon
ATCCATGAGTGCTGCCATGG+TGG 0.712018 8_1:+56106426 Msa1202470:three_prime_UTR
CACATGAAGTCTGATCCCAT+AGG 0.713522 8_1:+56106354 Msa1202470:three_prime_UTR
CTCCGAATGCTGCAGCAGTG+GGG 0.715264 8_1:-56106006 None:intergenic
AGTTTCCACTGTACTTACGG+TGG 0.718747 8_1:-56104719 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTATAATTTAACTTTAA+AGG + chr8_1:56105392-56105411 Msa1202470:intron 10.0%
!!! ATTGTTTTTAAAAATAAAAC+AGG - chr8_1:56106614-56106633 None:intergenic 10.0%
!! GGTATAAAATATAATTTATC+TGG + chr8_1:56103781-56103800 Msa1202470:intron 15.0%
!! GAATTATCATAAGTATAATT+TGG - chr8_1:56104859-56104878 None:intergenic 15.0%
!! CTAAATTAGTATACAATAAA+AGG - chr8_1:56104887-56104906 None:intergenic 15.0%
!! TTATATTGCAAATACATTAT+AGG - chr8_1:56105153-56105172 None:intergenic 15.0%
!!! ATAATTAAAAGCACAAATAT+TGG - chr8_1:56105197-56105216 None:intergenic 15.0%
!!! ATCATAGTATTTTTTTTGTT+TGG + chr8_1:56106297-56106316 Msa1202470:three_prime_UTR 15.0%
!! TGAATAAATCCATATTAGAT+TGG + chr8_1:56102808-56102827 Msa1202470:intron 20.0%
!!! ATGAAAAATCTGAAATAACT+GGG + chr8_1:56102967-56102986 Msa1202470:intron 20.0%
!!! TGATTTAAATACCTTTTCTA+TGG + chr8_1:56103884-56103903 Msa1202470:intron 20.0%
!!! TCTTCTAAGTTTTAGATAAA+AGG - chr8_1:56104236-56104255 None:intergenic 20.0%
!! TTTACAGTGAAAACATTATA+TGG + chr8_1:56104270-56104289 Msa1202470:intron 20.0%
!! TCATAAAACTATTATTACCT+GGG - chr8_1:56104630-56104649 None:intergenic 20.0%
!! ATCATAAAACTATTATTACC+TGG - chr8_1:56104631-56104650 None:intergenic 20.0%
!!! GGTAATAATAGTTTTATGAT+AGG + chr8_1:56104631-56104650 Msa1202470:intron 20.0%
!!! ATAATAGTTTTATGATAGGT+TGG + chr8_1:56104635-56104654 Msa1202470:intron 20.0%
!!! TAATAGTTTTATGATAGGTT+GGG + chr8_1:56104636-56104655 Msa1202470:intron 20.0%
!! CAAAAGAATTATATAAATGG+TGG - chr8_1:56104920-56104939 None:intergenic 20.0%
!! CAGCAAAAGAATTATATAAA+TGG - chr8_1:56104923-56104942 None:intergenic 20.0%
!! TTAGAAACCAATAATACTTT+GGG + chr8_1:56105345-56105364 Msa1202470:intron 20.0%
!!! TTTTATGAAGTTTTTGATGT+TGG + chr8_1:56105740-56105759 Msa1202470:intron 20.0%
! AACAGTTGACTACAATTAAA+AGG + chr8_1:56102564-56102583 Msa1202470:five_prime_UTR 25.0%
! TGACTACAATTAAAAGGAAA+AGG + chr8_1:56102570-56102589 Msa1202470:five_prime_UTR 25.0%
! TACAATTAAAAGGAAAAGGA+GGG + chr8_1:56102574-56102593 Msa1202470:five_prime_UTR 25.0%
! AATATAATCGCATGCAATAT+AGG - chr8_1:56102763-56102782 None:intergenic 25.0%
! TATTCATCAGATTATTCAGA+TGG - chr8_1:56102794-56102813 None:intergenic 25.0%
! GTAATCAAACCAATCTAATA+TGG - chr8_1:56102820-56102839 None:intergenic 25.0%
!!! AAAATTTTTCAGTTCATCTG+AGG + chr8_1:56102894-56102913 Msa1202470:intron 25.0%
!!! CAGTTATTTCAGATTTTTCA+TGG - chr8_1:56102968-56102987 None:intergenic 25.0%
!! CATGAAAAATCTGAAATAAC+TGG + chr8_1:56102966-56102985 Msa1202470:intron 25.0%
! ATTGACATAGTTTGATAAGA+TGG + chr8_1:56103035-56103054 Msa1202470:exon 25.0%
! TTGACATAGTTTGATAAGAT+GGG + chr8_1:56103036-56103055 Msa1202470:exon 25.0%
! ATCAGTTATGTGTTTACATT+AGG + chr8_1:56103632-56103651 Msa1202470:intron 25.0%
!! TTTTATACCCCTTTAAATGA+AGG - chr8_1:56103770-56103789 None:intergenic 25.0%
!! TATGAGGTTTTCACTATTTA+GGG + chr8_1:56103834-56103853 Msa1202470:intron 25.0%
! AAAATTTCAAAGACTAAAGC+TGG - chr8_1:56104174-56104193 None:intergenic 25.0%
! ATAGGTTTGGGAAAAAATAA+AGG - chr8_1:56105135-56105154 None:intergenic 25.0%
! TGCAAATACATTATAGGTTT+GGG - chr8_1:56105147-56105166 None:intergenic 25.0%
! TTGCAAATACATTATAGGTT+TGG - chr8_1:56105148-56105167 None:intergenic 25.0%
! ATTATTAGAGAAGATTAACC+TGG + chr8_1:56105212-56105231 Msa1202470:intron 25.0%
! AGTATTATATCACGTTAACA+GGG - chr8_1:56105281-56105300 None:intergenic 25.0%
! AAGTATTATATCACGTTAAC+AGG - chr8_1:56105282-56105301 None:intergenic 25.0%
!!! CAAAGTATTATTGGTTTCTA+AGG - chr8_1:56105346-56105365 None:intergenic 25.0%
! CTTAGAAACCAATAATACTT+TGG + chr8_1:56105344-56105363 Msa1202470:intron 25.0%
!! TTCTTAACCCAAAGTATTAT+TGG - chr8_1:56105355-56105374 None:intergenic 25.0%
!! TTCTGTTCCAAATTTTTCTT+GGG + chr8_1:56105628-56105647 Msa1202470:intron 25.0%
!!! CATATTGGTTTCTTACTTTA+AGG - chr8_1:56105656-56105675 None:intergenic 25.0%
! GGATAAATAAACAGACATAT+TGG - chr8_1:56105671-56105690 None:intergenic 25.0%
!!! GGAACTCTGTTTTATTAATA+TGG + chr8_1:56105822-56105841 Msa1202470:intron 25.0%
! TGTGTAATATCTGCTATATT+AGG + chr8_1:56105879-56105898 Msa1202470:intron 25.0%
!!! ATACATGTTTTTGAATTTGC+AGG + chr8_1:56105919-56105938 Msa1202470:intron 25.0%
!! TTTGCATATTTTATCAACTG+AGG + chr8_1:56106264-56106283 Msa1202470:three_prime_UTR 25.0%
!!! TTTTTTAGTAGCAAGTCAAA+AGG - chr8_1:56106570-56106589 None:intergenic 25.0%
CTACAATTAAAAGGAAAAGG+AGG + chr8_1:56102573-56102592 Msa1202470:five_prime_UTR 30.0%
TATATGACCTTCTCTCTAAA+TGG - chr8_1:56103141-56103160 None:intergenic 30.0%
! GATCTCTCTTTTCATTTTCT+TGG + chr8_1:56103167-56103186 Msa1202470:CDS 30.0%
TGGATCAAAGATTATTGAAG+TGG + chr8_1:56103344-56103363 Msa1202470:CDS 30.0%
AAAGAACGACACTTACAAAA+GGG - chr8_1:56103394-56103413 None:intergenic 30.0%
ACATGCATTCCTTCATTTAA+AGG + chr8_1:56103758-56103777 Msa1202470:intron 30.0%
CATGCATTCCTTCATTTAAA+GGG + chr8_1:56103759-56103778 Msa1202470:intron 30.0%
ATGCATTCCTTCATTTAAAG+GGG + chr8_1:56103760-56103779 Msa1202470:intron 30.0%
! CTATGAGGTTTTCACTATTT+AGG + chr8_1:56103833-56103852 Msa1202470:intron 30.0%
TTAGATGAGCTTCTTCAAAA+AGG + chr8_1:56104067-56104086 Msa1202470:CDS 30.0%
GATATTAGTCGCTATGAATA+GGG - chr8_1:56104116-56104135 None:intergenic 30.0%
AGATATTAGTCGCTATGAAT+AGG - chr8_1:56104117-56104136 None:intergenic 30.0%
TATTCATAGCGACTAATATC+TGG + chr8_1:56104116-56104135 Msa1202470:CDS 30.0%
CAGTGAAAACATTATATGGA+AGG + chr8_1:56104274-56104293 Msa1202470:intron 30.0%
! CTGTTCTAGTTATCAACAAA+TGG - chr8_1:56104367-56104386 None:intergenic 30.0%
! CTTGGAAGTATATCACAATT+AGG - chr8_1:56104472-56104491 None:intergenic 30.0%
CTAATTGTGATATACTTCCA+AGG + chr8_1:56104470-56104489 Msa1202470:CDS 30.0%
AAACTTCATCGTAAATCTGT+TGG + chr8_1:56104737-56104756 Msa1202470:CDS 30.0%
AACTTCATCGTAAATCTGTT+GGG + chr8_1:56104738-56104757 Msa1202470:CDS 30.0%
AAATGGAAGGAATCTGAATA+TGG + chr8_1:56104762-56104781 Msa1202470:CDS 30.0%
! ATTTTGCAGTTTAGCTGATA+TGG + chr8_1:56104948-56104967 Msa1202470:intron 30.0%
!!! AATCCAAGTTTTAGAGAACA+AGG - chr8_1:56105028-56105047 None:intergenic 30.0%
! TTTATGATGCTTTTAGCCAT+TGG + chr8_1:56105250-56105269 Msa1202470:intron 30.0%
AGCAAAATATTAGCTAGACT+TGG + chr8_1:56105308-56105327 Msa1202470:intron 30.0%
GCAAAATATTAGCTAGACTT+GGG + chr8_1:56105309-56105328 Msa1202470:intron 30.0%
TATCTCATATATGCTTTGTC+AGG + chr8_1:56105524-56105543 Msa1202470:intron 30.0%
AACTCATATGCTTCTTATTC+TGG - chr8_1:56105556-56105575 None:intergenic 30.0%
! AGAATAAGAAGCATATGAGT+TGG + chr8_1:56105555-56105574 Msa1202470:intron 30.0%
! GTTCTGTTCCAAATTTTTCT+TGG + chr8_1:56105627-56105646 Msa1202470:intron 30.0%
TAAGGATCCCAAGAAAAATT+TGG - chr8_1:56105638-56105657 None:intergenic 30.0%
CATAAAACAACACAGATAAG+TGG - chr8_1:56105727-56105746 None:intergenic 30.0%
!! GTACTTTGAAACATTTGAGA+AGG + chr8_1:56106123-56106142 Msa1202470:CDS 30.0%
AAACAAAAGTAATTGCTTGG+CGG - chr8_1:56106187-56106206 None:intergenic 30.0%
CCAAAACAAAAGTAATTGCT+TGG - chr8_1:56106190-56106209 None:intergenic 30.0%
!! CCAAGCAATTACTTTTGTTT+TGG + chr8_1:56106187-56106206 Msa1202470:three_prime_UTR 30.0%
AAAACTACTCTTTGTCTTCA+AGG - chr8_1:56106240-56106259 None:intergenic 30.0%
ATGGATAATTATACCACACA+CGG - chr8_1:56106412-56106431 None:intergenic 30.0%
AGATAACAAAGCTCTTTCAA+AGG - chr8_1:56106466-56106485 None:intergenic 30.0%
ATAATGCCAGAGCAAAAAAA+CGG + chr8_1:56106489-56106508 Msa1202470:three_prime_UTR 30.0%
! TTATGGATTTAAGCATTGCT+GGG - chr8_1:56106543-56106562 None:intergenic 30.0%
! TTTATGGATTTAAGCATTGC+TGG - chr8_1:56106544-56106563 None:intergenic 30.0%
CTGAAAGAAAATAGCAGAAC+GGG - chr8_1:56102645-56102664 None:intergenic 35.0%
CCTGAAAGAAAATAGCAGAA+CGG - chr8_1:56102646-56102665 None:intergenic 35.0%
TTCACTGCATGTAGCTATTA+AGG + chr8_1:56102855-56102874 Msa1202470:intron 35.0%
TCATCTGAGGAACTTTACAT+CGG + chr8_1:56102907-56102926 Msa1202470:intron 35.0%
!! TGAATTTTGATGTGTGATGC+AGG + chr8_1:56103008-56103027 Msa1202470:intron 35.0%
ACATAGTTTGATAAGATGGG+TGG + chr8_1:56103039-56103058 Msa1202470:exon 35.0%
ATAACACGCATCCAATAGAA+CGG - chr8_1:56103243-56103262 None:intergenic 35.0%
CAAAGAACGACACTTACAAA+AGG - chr8_1:56103395-56103414 None:intergenic 35.0%
ATCACAGTATATCCTACTCT+AGG + chr8_1:56103493-56103512 Msa1202470:intron 35.0%
CTGTTATATCTAGATGAGTC+AGG + chr8_1:56103544-56103563 Msa1202470:intron 35.0%
AATCATGTGATCACTGTAAC+AGG - chr8_1:56103579-56103598 None:intergenic 35.0%
ATGAAGGAATGCATGTCAAA+TGG - chr8_1:56103754-56103773 None:intergenic 35.0%
!! TATCTGCTTTTGTCTCTATG+AGG + chr8_1:56103818-56103837 Msa1202470:intron 35.0%
! TACCTTTTCTATGGCAGAAA+CGG + chr8_1:56103893-56103912 Msa1202470:intron 35.0%
!!! CTTGGTATTTTGATAGCTGT+CGG + chr8_1:56103929-56103948 Msa1202470:CDS 35.0%
ATACATCCCTGAAAGAACAT+AGG - chr8_1:56103966-56103985 None:intergenic 35.0%
TATGTTCTTTCAGGGATGTA+TGG + chr8_1:56103965-56103984 Msa1202470:CDS 35.0%
TAATACCTGCAAAAAAGAGC+TGG - chr8_1:56104036-56104055 None:intergenic 35.0%
GAGCTTCTTCAAAAAGGATA+TGG + chr8_1:56104073-56104092 Msa1202470:CDS 35.0%
CTTCAAAAAGGATATGGTCT+TGG + chr8_1:56104079-56104098 Msa1202470:CDS 35.0%
! AAAAGGATATGGTCTTGGTT+CGG + chr8_1:56104084-56104103 Msa1202470:CDS 35.0%
TTTAGCAACTATTAACCACC+AGG + chr8_1:56104202-56104221 Msa1202470:intron 35.0%
TTAGCAACTATTAACCACCA+GGG + chr8_1:56104203-56104222 Msa1202470:intron 35.0%
AGATAAAAGGTAATATGCCC+TGG - chr8_1:56104223-56104242 None:intergenic 35.0%
!! GTTGATAACTAGAACAGACA+AGG + chr8_1:56104370-56104389 Msa1202470:CDS 35.0%
GAGGTATAGAACAGTTTGAT+TGG - chr8_1:56104554-56104573 None:intergenic 35.0%
AGAGCAGACTGAAGAATAAT+GGG - chr8_1:56104584-56104603 None:intergenic 35.0%
AAGAGCAGACTGAAGAATAA+TGG - chr8_1:56104585-56104604 None:intergenic 35.0%
TGAAGTTTCCACTGTACTTA+CGG - chr8_1:56104725-56104744 None:intergenic 35.0%
ACTTCATCGTAAATCTGTTG+GGG + chr8_1:56104739-56104758 Msa1202470:CDS 35.0%
ATAGTATGCAATACCACCAA+CGG - chr8_1:56104805-56104824 None:intergenic 35.0%
AGATAGAACAAAGCATGGAA+AGG - chr8_1:56104982-56105001 None:intergenic 35.0%
ACACAAGATAGAACAAAGCA+TGG - chr8_1:56104987-56105006 None:intergenic 35.0%
!! GTTCTCTAAAACTTGGATTG+AGG + chr8_1:56105029-56105048 Msa1202470:CDS 35.0%
GCACAAATATTGGAGATAAC+AGG - chr8_1:56105187-56105206 None:intergenic 35.0%
! GCATATATGAGATAACTTGC+AGG - chr8_1:56105518-56105537 None:intergenic 35.0%
!! TGAGTTGGTTAGTTTAGAAC+AGG + chr8_1:56105570-56105589 Msa1202470:intron 35.0%
AGACATTGTTGCATACACTA+TGG - chr8_1:56105692-56105711 None:intergenic 35.0%
!! TTTGATGTTGGTTCAGAGTT+AGG + chr8_1:56105752-56105771 Msa1202470:intron 35.0%
GAATTTGCAGGAACAACAAA+TGG + chr8_1:56105931-56105950 Msa1202470:intron 35.0%
CTTTCTGCAAGTTTGATTCA+CGG - chr8_1:56105970-56105989 None:intergenic 35.0%
!!! ACAGTGTTGGCAGATTTTAT+GGG + chr8_1:56106049-56106068 Msa1202470:CDS 35.0%
!! CTGTCTCACTTTTAACCTAT+GGG - chr8_1:56106372-56106391 None:intergenic 35.0%
! AAAGTGAGACAGGTTAGTTA+TGG + chr8_1:56106380-56106399 Msa1202470:three_prime_UTR 35.0%
TAATGCCAGAGCAAAAAAAC+GGG + chr8_1:56106490-56106509 Msa1202470:three_prime_UTR 35.0%
GCAAGTCAAAAGGCAATTTA+TGG - chr8_1:56106560-56106579 None:intergenic 35.0%
!!! CCGTTCTGCTATTTTCTTTC+AGG + chr8_1:56102643-56102662 Msa1202470:five_prime_UTR 40.0%
TCTCTCTGCATGTGCAAATT+AGG + chr8_1:56102691-56102710 Msa1202470:intron 40.0%
CTCTCTGCATGTGCAAATTA+GGG + chr8_1:56102692-56102711 Msa1202470:intron 40.0%
GCATGCAATATAGGTAGATC+TGG - chr8_1:56102754-56102773 None:intergenic 40.0%
TAGTTTGATAAGATGGGTGG+TGG + chr8_1:56103042-56103061 Msa1202470:exon 40.0%
AGTTTGATAAGATGGGTGGT+GGG + chr8_1:56103043-56103062 Msa1202470:exon 40.0%
!! GAAAGTGCCATTTAGAGAGA+AGG + chr8_1:56103131-56103150 Msa1202470:CDS 40.0%
TGTAGTCAGCTTCCTCTATA+TGG + chr8_1:56103192-56103211 Msa1202470:CDS 40.0%
GTAGTCAGCTTCCTCTATAT+GGG + chr8_1:56103193-56103212 Msa1202470:CDS 40.0%
! ATCACTCCTATTGTCACTTC+TGG + chr8_1:56103300-56103319 Msa1202470:CDS 40.0%
! TCACTCCTATTGTCACTTCT+GGG + chr8_1:56103301-56103320 Msa1202470:CDS 40.0%
! AAAACTACTGACGTTTGGTG+AGG - chr8_1:56103454-56103473 None:intergenic 40.0%
CAGCTAAAACTACTGACGTT+TGG - chr8_1:56103459-56103478 None:intergenic 40.0%
!!! CAAACGTCAGTAGTTTTAGC+TGG + chr8_1:56103457-56103476 Msa1202470:intron 40.0%
CGTGTGATAAATCCTAGAGT+AGG - chr8_1:56103508-56103527 None:intergenic 40.0%
GGATTTATCACACGTGTGTA+TGG + chr8_1:56103514-56103533 Msa1202470:intron 40.0%
! GAGGTTTTCACTATTTAGGG+TGG + chr8_1:56103837-56103856 Msa1202470:intron 40.0%
!! TTTTCACTATTTAGGGTGGC+TGG + chr8_1:56103841-56103860 Msa1202470:intron 40.0%
!!! TATTTTGATAGCTGTCGGAG+AGG + chr8_1:56103934-56103953 Msa1202470:CDS 40.0%
CAGTTGCCTATGTTCTTTCA+GGG + chr8_1:56103957-56103976 Msa1202470:CDS 40.0%
AAAAGAGCTGGACAATGATG+AGG - chr8_1:56104024-56104043 None:intergenic 40.0%
!!! ATTGTCCAGCTCTTTTTTGC+AGG + chr8_1:56104028-56104047 Msa1202470:CDS 40.0%
! AAAGGATATGGTCTTGGTTC+GGG + chr8_1:56104085-56104104 Msa1202470:CDS 40.0%
CATAGCGACTAATATCTGGT+AGG + chr8_1:56104120-56104139 Msa1202470:intron 40.0%
TAAAAGGTAATATGCCCTGG+TGG - chr8_1:56104220-56104239 None:intergenic 40.0%
GCAAGGAGATTTGTCACATT+GGG - chr8_1:56104434-56104453 None:intergenic 40.0%
AGCAAGGAGATTTGTCACAT+TGG - chr8_1:56104435-56104454 None:intergenic 40.0%
!! AAGAATAATGGGCATGTTGG+AGG - chr8_1:56104573-56104592 None:intergenic 40.0%
!! CTGAAGAATAATGGGCATGT+TGG - chr8_1:56104576-56104595 None:intergenic 40.0%
CTGGGAGATAAAGTAGAGAT+TGG - chr8_1:56104612-56104631 None:intergenic 40.0%
CAATCTCTACTTTATCTCCC+AGG + chr8_1:56104610-56104629 Msa1202470:CDS 40.0%
!! TAGGTTGGGCTTAGCATTTT+TGG + chr8_1:56104650-56104669 Msa1202470:intron 40.0%
TCGTAAATCTGTTGGGGAAA+TGG + chr8_1:56104745-56104764 Msa1202470:CDS 40.0%
AAATCTGTTGGGGAAATGGA+AGG + chr8_1:56104749-56104768 Msa1202470:CDS 40.0%
TGGAAGGAATCTGAATATGG+AGG + chr8_1:56104765-56104784 Msa1202470:CDS 40.0%
AAGGAATCTGAATATGGAGG+TGG + chr8_1:56104768-56104787 Msa1202470:CDS 40.0%
TAGTATGCAATACCACCAAC+GGG - chr8_1:56104804-56104823 None:intergenic 40.0%
! TTTGGAACATGTCTCTTACC+TGG - chr8_1:56104841-56104860 None:intergenic 40.0%
GAACAAAGCATGGAAAGGAT+TGG - chr8_1:56104977-56104996 None:intergenic 40.0%
!! GTGCCTTGTTCTCTAAAACT+TGG + chr8_1:56105022-56105041 Msa1202470:CDS 40.0%
AAAACTTGGATTGAGGTCTC+TGG + chr8_1:56105036-56105055 Msa1202470:CDS 40.0%
GGATGTTGCAAAGCAATTGA+AGG + chr8_1:56105071-56105090 Msa1202470:CDS 40.0%
AGATTAACCTGGTGATAAGC+AGG + chr8_1:56105223-56105242 Msa1202470:intron 40.0%
GATTAACCTGGTGATAAGCA+GGG + chr8_1:56105224-56105243 Msa1202470:intron 40.0%
CGTTAACAGGGAAATTCCAA+TGG - chr8_1:56105269-56105288 None:intergenic 40.0%
TTACAGTCTGTCATTGTTGC+TGG + chr8_1:56105479-56105498 Msa1202470:intron 40.0%
AACACAGATAAGTGGCATAG+AGG - chr8_1:56105719-56105738 None:intergenic 40.0%
!! TTTGAAACCGAGTTTGTTGC+TGG + chr8_1:56105800-56105819 Msa1202470:intron 40.0%
!! TTGAAACCGAGTTTGTTGCT+GGG + chr8_1:56105801-56105820 Msa1202470:intron 40.0%
!!! GACAGTGTTGGCAGATTTTA+TGG + chr8_1:56106048-56106067 Msa1202470:CDS 40.0%
! GCAGATTTTATGGGAGCAAT+AGG + chr8_1:56106058-56106077 Msa1202470:CDS 40.0%
TTTATGGGAGCAATAGGTTC+AGG + chr8_1:56106064-56106083 Msa1202470:CDS 40.0%
TTATGGGAGCAATAGGTTCA+GGG + chr8_1:56106065-56106084 Msa1202470:CDS 40.0%
! GGATCTGAAGTACAGTACAA+GGG - chr8_1:56106219-56106238 None:intergenic 40.0%
! AGGATCTGAAGTACAGTACA+AGG - chr8_1:56106220-56106239 None:intergenic 40.0%
GATCAGACTTCATGTGTTCA+AGG - chr8_1:56106350-56106369 None:intergenic 40.0%
!! CCTGTCTCACTTTTAACCTA+TGG - chr8_1:56106373-56106392 None:intergenic 40.0%
CCATAGGTTAAAAGTGAGAC+AGG + chr8_1:56106370-56106389 Msa1202470:three_prime_UTR 40.0%
TCATGTGAAAACTACCACCA+TGG - chr8_1:56106443-56106462 None:intergenic 40.0%
AATGCCAGAGCAAAAAAACG+GGG + chr8_1:56106491-56106510 Msa1202470:three_prime_UTR 40.0%
!! ATAAGATGGGTGGTGGGTTT+AGG + chr8_1:56103049-56103068 Msa1202470:exon 45.0%
!! TAAGATGGGTGGTGGGTTTA+GGG + chr8_1:56103050-56103069 Msa1202470:exon 45.0%
GTCGAGTGTATCCCATATAG+AGG - chr8_1:56103207-56103226 None:intergenic 45.0%
TATGGGATACACTCGACAAC+AGG + chr8_1:56103210-56103229 Msa1202470:CDS 45.0%
GTTATCCTTGCTTCAAACCG+TGG + chr8_1:56103258-56103277 Msa1202470:CDS 45.0%
TTCAAACCGTGGAACTGTCA+TGG + chr8_1:56103269-56103288 Msa1202470:CDS 45.0%
ACAACAATGTGCGAGAGGAT+CGG + chr8_1:56103367-56103386 Msa1202470:CDS 45.0%
CTCCGTTTCTGCCATAGAAA+AGG - chr8_1:56103898-56103917 None:intergenic 45.0%
GCAGTTGCCTATGTTCTTTC+AGG + chr8_1:56103956-56103975 Msa1202470:CDS 45.0%
! TTCAGGGATGTATGGTAGTG+TGG + chr8_1:56103973-56103992 Msa1202470:CDS 45.0%
! TCAGGGATGTATGGTAGTGT+GGG + chr8_1:56103974-56103993 Msa1202470:CDS 45.0%
TAGCATTTCCCACTCCAAGT+TGG - chr8_1:56104000-56104019 None:intergenic 45.0%
!! CTCTTCGTGAGGCATTTTAC+CGG + chr8_1:56104399-56104418 Msa1202470:CDS 45.0%
TCACATTGGGAAGATTCTGC+CGG - chr8_1:56104421-56104440 None:intergenic 45.0%
GGAAGATCAAGACAGTAGCA+AGG - chr8_1:56104451-56104470 None:intergenic 45.0%
ATACTTCCAAGGTTTCCGTG+TGG + chr8_1:56104481-56104500 Msa1202470:CDS 45.0%
ACCTTACAGGCAAAACCACA+CGG - chr8_1:56104499-56104518 None:intergenic 45.0%
CGAGCATTCTTTGACCTTAC+AGG - chr8_1:56104512-56104531 None:intergenic 45.0%
GTAAGGTCAAAGAATGCTCG+TGG + chr8_1:56104512-56104531 Msa1202470:CDS 45.0%
AGTTTCCACTGTACTTACGG+TGG - chr8_1:56104722-56104741 None:intergenic 45.0%
GAACATGTCTCTTACCTGGA+AGG - chr8_1:56104837-56104856 None:intergenic 45.0%
AAATGACCCTGCTTATCACC+AGG - chr8_1:56105233-56105252 None:intergenic 45.0%
AAGGCCAGTATACTTGTAGC+CGG + chr8_1:56105411-56105430 Msa1202470:intron 45.0%
AGAGTTCCCAGCAACAAACT+CGG - chr8_1:56105810-56105829 None:intergenic 45.0%
! GAACAACAAATGGTGATGCC+TGG + chr8_1:56105941-56105960 Msa1202470:CDS 45.0%
AAGTTTGATTCACGGTGTCC+AGG - chr8_1:56105962-56105981 None:intergenic 45.0%
!! GCATTCGGAGGCATTTGTAT+TGG + chr8_1:56106019-56106038 Msa1202470:CDS 45.0%
! TATTGGTGCTCTGACAGTGT+TGG + chr8_1:56106036-56106055 Msa1202470:CDS 45.0%
AAGGAAAAAGCCAGTGAGCT+TGG + chr8_1:56106142-56106161 Msa1202470:CDS 45.0%
CACATGAAGTCTGATCCCAT+AGG + chr8_1:56106354-56106373 Msa1202470:three_prime_UTR 45.0%
! ATTATCCATGAGTGCTGCCA+TGG + chr8_1:56106423-56106442 Msa1202470:three_prime_UTR 45.0%
ATGCCAGAGCAAAAAAACGG+GGG + chr8_1:56106492-56106511 Msa1202470:three_prime_UTR 45.0%
CTGATATCTCTCCACTCACC+CGG + chr8_1:56102604-56102623 Msa1202470:five_prime_UTR 50.0%
TGATATCTCTCCACTCACCC+GGG + chr8_1:56102605-56102624 Msa1202470:five_prime_UTR 50.0%
TCGGGAAGGAACGAGAGAAA+CGG - chr8_1:56103093-56103112 None:intergenic 50.0%
CTGTCAGCAGTCTGAACTTC+GGG - chr8_1:56103111-56103130 None:intergenic 50.0%
CCTGTCAGCAGTCTGAACTT+CGG - chr8_1:56103112-56103131 None:intergenic 50.0%
CAGGTGCAGATCCGTTCTAT+TGG + chr8_1:56103229-56103248 Msa1202470:CDS 50.0%
! CAGTTCCACGGTTTGAAGCA+AGG - chr8_1:56103266-56103285 None:intergenic 50.0%
CAAGCTCCATGACAGTTCCA+CGG - chr8_1:56103278-56103297 None:intergenic 50.0%
! TCCTATTGTCACTTCTGGGC+TGG + chr8_1:56103305-56103324 Msa1202470:CDS 50.0%
ACCAGCCCAGAAGTGACAAT+AGG - chr8_1:56103309-56103328 None:intergenic 50.0%
AGTGGACAACAATGTGCGAG+AGG + chr8_1:56103362-56103381 Msa1202470:CDS 50.0%
CAACAATGTGCGAGAGGATC+GGG + chr8_1:56103368-56103387 Msa1202470:CDS 50.0%
TCTCACACTTCTGCTAGCAG+TGG + chr8_1:56103724-56103743 Msa1202470:intron 50.0%
AACGGAGCACAGAAGCTACT+TGG + chr8_1:56103911-56103930 Msa1202470:CDS 50.0%
! TATGGTAGTGTGGGCCAACT+TGG + chr8_1:56103983-56104002 Msa1202470:CDS 50.0%
AGTCCCACCACCATTAACAG+TGG + chr8_1:56104302-56104321 Msa1202470:CDS 50.0%
CGTCCACTGTTAATGGTGGT+GGG - chr8_1:56104308-56104327 None:intergenic 50.0%
ACGTCCACTGTTAATGGTGG+TGG - chr8_1:56104309-56104328 None:intergenic 50.0%
ACCACCATTAACAGTGGACG+TGG + chr8_1:56104308-56104327 Msa1202470:CDS 50.0%
TCCACGTCCACTGTTAATGG+TGG - chr8_1:56104312-56104331 None:intergenic 50.0%
AGCTCCACGTCCACTGTTAA+TGG - chr8_1:56104315-56104334 None:intergenic 50.0%
GCAAAACCACACGGAAACCT+TGG - chr8_1:56104490-56104509 None:intergenic 50.0%
!! TCCGTGTGGTTTTGCCTGTA+AGG + chr8_1:56104495-56104514 Msa1202470:CDS 50.0%
AAAGAATGCTCGTGGACAGC+AGG + chr8_1:56104520-56104539 Msa1202470:CDS 50.0%
AAGAATGCTCGTGGACAGCA+GGG + chr8_1:56104521-56104540 Msa1202470:CDS 50.0%
CTTCTCCACCGTAAGTACAG+TGG + chr8_1:56104714-56104733 Msa1202470:CDS 50.0%
ACTATATCACTGCGCCTTCC+AGG + chr8_1:56104820-56104839 Msa1202470:CDS 50.0%
! AGGTCTCTGGTTCATCTGCT+AGG + chr8_1:56105049-56105068 Msa1202470:CDS 50.0%
! GGTCTCTGGTTCATCTGCTA+GGG + chr8_1:56105050-56105069 Msa1202470:CDS 50.0%
AGGCCAGTATACTTGTAGCC+GGG + chr8_1:56105412-56105431 Msa1202470:intron 50.0%
AACTAGACATGCACCTCCAG+CGG - chr8_1:56105461-56105480 None:intergenic 50.0%
GAGCAATAGGTTCAGGGACA+GGG + chr8_1:56106071-56106090 Msa1202470:CDS 50.0%
ACCAAAGAAGCCAAGCTCAC+TGG - chr8_1:56106155-56106174 None:intergenic 50.0%
!!! AGACCCCCGTTTTTTTGCTC+TGG - chr8_1:56106498-56106517 None:intergenic 50.0%
CAGCAGTCTGAACTTCGGGA+AGG - chr8_1:56103107-56103126 None:intergenic 55.0%
CCGAAGTTCAGACTGCTGAC+AGG + chr8_1:56103109-56103128 Msa1202470:CDS 55.0%
CGTGGAACTGTCATGGAGCT+TGG + chr8_1:56103276-56103295 Msa1202470:CDS 55.0%
!!! TGGGCTGGTCATGCAGCTTT+TGG + chr8_1:56103320-56103339 Msa1202470:CDS 55.0%
! CTGGTCATGCAGCTTTTGGC+TGG + chr8_1:56103324-56103343 Msa1202470:CDS 55.0%
TAGTGTGGGCCAACTTGGAG+TGG + chr8_1:56103988-56104007 Msa1202470:CDS 55.0%
AGTGTGGGCCAACTTGGAGT+GGG + chr8_1:56103989-56104008 Msa1202470:CDS 55.0%
GGACGTGGAGCTGAGTTTGA+AGG + chr8_1:56104323-56104342 Msa1202470:CDS 55.0%
CAAGGTTCGTGCTCTTCGTG+AGG + chr8_1:56104388-56104407 Msa1202470:CDS 55.0%
GGTGGTCACTCAATTCCCGT+TGG + chr8_1:56104786-56104805 Msa1202470:CDS 55.0%
GGTCACTCAATTCCCGTTGG+TGG + chr8_1:56104789-56104808 Msa1202470:CDS 55.0%
TGGCCCGGCTACAAGTATAC+TGG - chr8_1:56105418-56105437 None:intergenic 55.0%
ACTAGACATGCACCTCCAGC+GGG - chr8_1:56105460-56105479 None:intergenic 55.0%
CTGCAGCAGTGGGGATGTAT+CGG - chr8_1:56106000-56106019 None:intergenic 55.0%
ATCCCCACTGCTGCAGCATT+CGG + chr8_1:56106004-56106023 Msa1202470:CDS 55.0%
GGAGCAATAGGTTCAGGGAC+AGG + chr8_1:56106070-56106089 Msa1202470:CDS 55.0%
GCCAGTGAGCTTGGCTTCTT+TGG + chr8_1:56106151-56106170 Msa1202470:CDS 55.0%
GTTATGGAAGCAGCCGTGTG+TGG + chr8_1:56106396-56106415 Msa1202470:three_prime_UTR 55.0%
! ATCCATGAGTGCTGCCATGG+TGG + chr8_1:56106426-56106445 Msa1202470:three_prime_UTR 55.0%
TACCACCATGGCAGCACTCA+TGG - chr8_1:56106431-56106450 None:intergenic 55.0%
GGGAAGACGACGAAGATCCC+GGG - chr8_1:56102625-56102644 None:intergenic 60.0%
CGGGAAGACGACGAAGATCC+CGG - chr8_1:56102626-56102645 None:intergenic 60.0%
CTCCGAATGCTGCAGCAGTG+GGG - chr8_1:56106009-56106028 None:intergenic 60.0%
CCTCCGAATGCTGCAGCAGT+GGG - chr8_1:56106010-56106029 None:intergenic 60.0%
CGACGAAGATCCCGGGTGAG+TGG - chr8_1:56102618-56102637 None:intergenic 65.0%
ACTTGTAGCCGGGCCAGTGC+TGG + chr8_1:56105422-56105441 Msa1202470:intron 65.0%
CTTGTAGCCGGGCCAGTGCT+GGG + chr8_1:56105423-56105442 Msa1202470:intron 65.0%
!! TCAATGGCCCAGCACTGGCC+CGG - chr8_1:56105433-56105452 None:intergenic 65.0%
! GCCAGTGCTGGGCCATTGAC+TGG + chr8_1:56105434-56105453 Msa1202470:intron 65.0%
GCCAGTCAATGGCCCAGCAC+TGG - chr8_1:56105438-56105457 None:intergenic 65.0%
ACCTCCAGCGGGCCAGTCAA+TGG - chr8_1:56105449-56105468 None:intergenic 65.0%
CCCACTGCTGCAGCATTCGG+AGG + chr8_1:56106007-56106026 Msa1202470:CDS 65.0%
GCCTCCGAATGCTGCAGCAG+TGG - chr8_1:56106011-56106030 None:intergenic 65.0%
! TGGGCCATTGACTGGCCCGC+TGG + chr8_1:56105442-56105461 Msa1202470:intron 70.0%
! GCCATTGACTGGCCCGCTGG+AGG + chr8_1:56105445-56105464 Msa1202470:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 56102562 56106680 56102562 ID=Msa1202470;Name=Msa1202470
chr8_1 mRNA 56102562 56106680 56102562 ID=Msa1202470-mRNA-1;Parent=Msa1202470;Name=Msa1202470-mRNA-1;_AED=0.01;_eAED=0.01;_QI=127|1|1|1|0.83|0.71|7|500|476
chr8_1 exon 56102562 56102664 56102562 ID=Msa1202470-mRNA-1:exon:18181;Parent=Msa1202470-mRNA-1
chr8_1 exon 56103030 56103397 56103030 ID=Msa1202470-mRNA-1:exon:18182;Parent=Msa1202470-mRNA-1
chr8_1 exon 56103910 56104137 56103910 ID=Msa1202470-mRNA-1:exon:18183;Parent=Msa1202470-mRNA-1
chr8_1 exon 56104277 56104631 56104277 ID=Msa1202470-mRNA-1:exon:18184;Parent=Msa1202470-mRNA-1
chr8_1 exon 56104714 56104841 56104714 ID=Msa1202470-mRNA-1:exon:18185;Parent=Msa1202470-mRNA-1
chr8_1 exon 56104957 56105092 56104957 ID=Msa1202470-mRNA-1:exon:18186;Parent=Msa1202470-mRNA-1
chr8_1 exon 56105941 56106680 56105941 ID=Msa1202470-mRNA-1:exon:18187;Parent=Msa1202470-mRNA-1
chr8_1 five_prime_UTR 56102562 56102664 56102562 ID=Msa1202470-mRNA-1:five_prime_utr;Parent=Msa1202470-mRNA-1
chr8_1 five_prime_UTR 56103030 56103053 56103030 ID=Msa1202470-mRNA-1:five_prime_utr;Parent=Msa1202470-mRNA-1
chr8_1 CDS 56103054 56103397 56103054 ID=Msa1202470-mRNA-1:cds;Parent=Msa1202470-mRNA-1
chr8_1 CDS 56103910 56104137 56103910 ID=Msa1202470-mRNA-1:cds;Parent=Msa1202470-mRNA-1
chr8_1 CDS 56104277 56104631 56104277 ID=Msa1202470-mRNA-1:cds;Parent=Msa1202470-mRNA-1
chr8_1 CDS 56104714 56104841 56104714 ID=Msa1202470-mRNA-1:cds;Parent=Msa1202470-mRNA-1
chr8_1 CDS 56104957 56105092 56104957 ID=Msa1202470-mRNA-1:cds;Parent=Msa1202470-mRNA-1
chr8_1 CDS 56105941 56106180 56105941 ID=Msa1202470-mRNA-1:cds;Parent=Msa1202470-mRNA-1
chr8_1 three_prime_UTR 56106181 56106680 56106181 ID=Msa1202470-mRNA-1:three_prime_utr;Parent=Msa1202470-mRNA-1
Gene Sequence

>Msa1202470

ATGGGTGGTGGGTTTAGGGTTCTTCACTTAGTAAGACCGTTTCTCTCGTTCCTTCCCGAAGTTCAGACTGCTGACAGGAAAGTGCCATTTAGAGAGAAGGTCATATATACTGTGATCTCTCTTTTCATTTTCTTGGTCTGTAGTCAGCTTCCTCTATATGGGATACACTCGACAACAGGTGCAGATCCGTTCTATTGGATGCGTGTTATCCTTGCTTCAAACCGTGGAACTGTCATGGAGCTTGGAATCACTCCTATTGTCACTTCTGGGCTGGTCATGCAGCTTTTGGCTGGATCAAAGATTATTGAAGTGGACAACAATGTGCGAGAGGATCGGGCCCTTTTAAACGGAGCACAGAAGCTACTTGGTATTTTGATAGCTGTCGGAGAGGCAGTTGCCTATGTTCTTTCAGGGATGTATGGTAGTGTGGGCCAACTTGGAGTGGGAAATGCTATCCTCATCATTGTCCAGCTCTTTTTTGCAGGTATTATTGTGATATGTTTAGATGAGCTTCTTCAAAAAGGATATGGTCTTGGTTCGGGAATTTCCCTATTCATAGCGACTAATATCTGTGAAAACATTATATGGAAGGCATTTAGTCCCACCACCATTAACAGTGGACGTGGAGCTGAGTTTGAAGGTGCTGTTATTGCTCTGTTCCATTTGTTGATAACTAGAACAGACAAGGTTCGTGCTCTTCGTGAGGCATTTTACCGGCAGAATCTTCCCAATGTGACAAATCTCCTTGCTACTGTCTTGATCTTCCTAATTGTGATATACTTCCAAGGTTTCCGTGTGGTTTTGCCTGTAAGGTCAAAGAATGCTCGTGGACAGCAGGGTTCATATCCAATCAAACTGTTCTATACCTCCAACATGCCCATTATTCTTCAGTCTGCTCTTGTTTCCAATCTCTACTTTATCTCCCAGCTTCTCCACCGTAAGTACAGTGGAAACTTCATCGTAAATCTGTTGGGGAAATGGAAGGAATCTGAATATGGAGGTGGTCACTCAATTCCCGTTGGTGGTATTGCATACTATATCACTGCGCCTTCCAGTTTAGCTGATATGGCAGCCAATCCTTTCCATGCTTTGTTCTATCTTGTGTTTATGCTATCTGCATGTGCCTTGTTCTCTAAAACTTGGATTGAGGTCTCTGGTTCATCTGCTAGGGATGTTGCAAAGCAATTGAAGGAACAACAAATGGTGATGCCTGGACACCGTGAATCAAACTTGCAGAAAGAGCTAAACCGATACATCCCCACTGCTGCAGCATTCGGAGGCATTTGTATTGGTGCTCTGACAGTGTTGGCAGATTTTATGGGAGCAATAGGTTCAGGGACAGGGATTTTGCTTGCAGTAACGATCATCTATCAGTACTTTGAAACATTTGAGAAGGAAAAAGCCAGTGAGCTTGGCTTCTTTGGTTTCTAA

Protein sequence

>Msa1202470

MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFIVNLLGKWKESEYGGGHSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKEKASELGFFGF*