Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0388690 | XP_013450274.1 | 82.041 | 245 | 21 | 2 | 1 | 224 | 1 | 243 | 2.08e-135 | 393 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0388690 | sp|Q9FG13|CXE15_ARATH | 52.590 | 251 | 88 | 6 | 1 | 222 | 1 | 249 | 5.73e-79 | 243 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0388690 | A0A072U3J9 | 82.041 | 245 | 21 | 2 | 1 | 224 | 1 | 243 | 9.92e-136 | 393 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0036550 | Msa0388690 | 0.808682 | 2.747091e-50 | -8.615850e-47 |
Msa0075830 | Msa0388690 | -0.807309 | 5.384147e-50 | -8.615850e-47 |
Msa0130710 | Msa0388690 | 0.816208 | 6.225583e-52 | -8.615850e-47 |
Msa0388690 | Msa1062290 | 0.802172 | 6.364720e-49 | -8.615850e-47 |
Msa0388690 | Msa1081170 | 0.840490 | 8.429163e-58 | -8.615850e-47 |
Msa0388690 | Msa1126460 | 0.837445 | 5.175744e-57 | -8.615850e-47 |
Msa0388690 | Msa1126530 | 0.943131 | 2.091086e-102 | -8.615850e-47 |
Msa0388690 | Msa1215540 | -0.822470 | 2.328885e-53 | -8.615850e-47 |
Msa0388690 | Msa1395720 | 0.808916 | 2.448317e-50 | -8.615850e-47 |
Msa0388690 | Msa1404810 | -0.804334 | 2.271135e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0388690 | MtrunA17_Chr7g0268091 | 82.041 | 245 | 21 | 2 | 1 | 224 | 1 | 243 | 1.91e-139 | 393 |
Msa0388690 | MtrunA17_Chr4g0025291 | 51.681 | 238 | 91 | 4 | 7 | 222 | 5 | 240 | 1.69e-78 | 238 |
Msa0388690 | MtrunA17_Chr1g0210121 | 35.223 | 247 | 121 | 7 | 7 | 221 | 26 | 265 | 4.72e-42 | 145 |
Msa0388690 | MtrunA17_Chr7g0214851 | 34.000 | 250 | 124 | 9 | 13 | 224 | 27 | 273 | 5.25e-41 | 142 |
Msa0388690 | MtrunA17_Chr8g0351201 | 36.066 | 244 | 128 | 7 | 3 | 220 | 7 | 248 | 2.21e-38 | 135 |
Msa0388690 | MtrunA17_Chr1g0204211 | 36.364 | 231 | 112 | 6 | 20 | 224 | 43 | 264 | 2.71e-38 | 135 |
Msa0388690 | MtrunA17_Chr6g0474411 | 34.649 | 228 | 117 | 5 | 19 | 220 | 27 | 248 | 2.35e-37 | 132 |
Msa0388690 | MtrunA17_Chr1g0204201 | 34.468 | 235 | 119 | 5 | 15 | 220 | 19 | 247 | 2.91e-37 | 132 |
Msa0388690 | MtrunA17_Chr8g0351211 | 35.983 | 239 | 113 | 7 | 15 | 220 | 9 | 240 | 4.08e-37 | 132 |
Msa0388690 | MtrunA17_Chr3g0081521 | 32.946 | 258 | 129 | 8 | 7 | 224 | 7 | 260 | 4.58e-37 | 132 |
Msa0388690 | MtrunA17_Chr6g0474491 | 35.081 | 248 | 122 | 8 | 3 | 219 | 5 | 244 | 1.58e-36 | 130 |
Msa0388690 | MtrunA17_Chr6g0474541 | 35.652 | 230 | 118 | 6 | 15 | 220 | 48 | 271 | 1.56e-34 | 126 |
Msa0388690 | MtrunA17_Chr6g0474471 | 37.019 | 208 | 95 | 6 | 41 | 220 | 47 | 246 | 3.82e-33 | 122 |
Msa0388690 | MtrunA17_Chr7g0235741 | 33.473 | 239 | 128 | 7 | 7 | 220 | 40 | 272 | 4.20e-33 | 122 |
Msa0388690 | MtrunA17_Chr1g0149271 | 33.184 | 223 | 118 | 7 | 14 | 214 | 10 | 223 | 1.72e-32 | 119 |
Msa0388690 | MtrunA17_Chr6g0474631 | 33.333 | 231 | 115 | 6 | 19 | 220 | 25 | 245 | 1.21e-31 | 117 |
Msa0388690 | MtrunA17_Chr3g0133701 | 31.356 | 236 | 121 | 7 | 14 | 221 | 14 | 236 | 3.02e-30 | 114 |
Msa0388690 | MtrunA17_Chr4g0045181 | 31.799 | 239 | 132 | 7 | 7 | 220 | 8 | 240 | 6.13e-30 | 113 |
Msa0388690 | MtrunA17_Chr8g0351171 | 29.958 | 237 | 127 | 7 | 20 | 224 | 17 | 246 | 8.49e-29 | 110 |
Msa0388690 | MtrunA17_Chr1g0196311 | 37.714 | 175 | 73 | 5 | 71 | 222 | 121 | 282 | 1.06e-27 | 107 |
Msa0388690 | MtrunA17_Chr4g0045131 | 28.814 | 236 | 140 | 5 | 7 | 220 | 48 | 277 | 3.49e-27 | 106 |
Msa0388690 | MtrunA17_Chr3g0095711 | 29.555 | 247 | 139 | 8 | 7 | 224 | 53 | 293 | 5.27e-26 | 103 |
Msa0388690 | MtrunA17_Chr5g0394251 | 29.388 | 245 | 142 | 7 | 7 | 224 | 13 | 253 | 1.09e-25 | 102 |
Msa0388690 | MtrunA17_Chr1g0205871 | 32.911 | 237 | 125 | 9 | 14 | 222 | 15 | 245 | 1.18e-25 | 101 |
Msa0388690 | MtrunA17_Chr6g0477231 | 30.455 | 220 | 106 | 6 | 39 | 222 | 53 | 261 | 1.36e-25 | 102 |
Msa0388690 | MtrunA17_Chr6g0477251 | 28.626 | 262 | 132 | 8 | 4 | 222 | 10 | 259 | 1.45e-25 | 104 |
Msa0388690 | MtrunA17_Chr6g0477251 | 28.626 | 262 | 132 | 8 | 4 | 222 | 564 | 813 | 9.73e-25 | 101 |
Msa0388690 | MtrunA17_Chr6g0477161 | 30.876 | 217 | 106 | 6 | 39 | 222 | 404 | 609 | 2.22e-25 | 103 |
Msa0388690 | MtrunA17_Chr6g0477161 | 29.508 | 244 | 118 | 8 | 22 | 222 | 28 | 260 | 7.80e-25 | 102 |
Msa0388690 | MtrunA17_Chr8g0353951 | 28.395 | 243 | 144 | 7 | 7 | 224 | 16 | 253 | 2.49e-25 | 101 |
Msa0388690 | MtrunA17_Chr4g0045121 | 29.258 | 229 | 134 | 5 | 14 | 220 | 18 | 240 | 2.92e-25 | 100 |
Msa0388690 | MtrunA17_Chr7g0259161 | 35.429 | 175 | 80 | 5 | 71 | 222 | 106 | 270 | 3.68e-25 | 100 |
Msa0388690 | MtrunA17_Chr1g0191301 | 32.864 | 213 | 95 | 8 | 45 | 222 | 67 | 266 | 7.81e-25 | 100 |
Msa0388690 | MtrunA17_Chr5g0394241 | 28.968 | 252 | 146 | 8 | 1 | 222 | 1 | 249 | 1.39e-24 | 99.0 |
Msa0388690 | MtrunA17_Chr7g0233871 | 29.268 | 246 | 141 | 7 | 6 | 224 | 11 | 250 | 5.15e-24 | 97.4 |
Msa0388690 | MtrunA17_Chr6g0477271 | 31.401 | 207 | 110 | 5 | 39 | 222 | 80 | 277 | 6.46e-24 | 97.8 |
Msa0388690 | MtrunA17_Chr1g0205781 | 27.686 | 242 | 147 | 6 | 6 | 224 | 11 | 247 | 7.11e-23 | 94.4 |
Msa0388690 | MtrunA17_Chr6g0477241 | 29.293 | 198 | 97 | 6 | 39 | 204 | 66 | 252 | 5.97e-22 | 91.7 |
Msa0388690 | MtrunA17_Chr1g0205791 | 28.340 | 247 | 135 | 8 | 6 | 224 | 9 | 241 | 6.44e-22 | 92.0 |
Msa0388690 | MtrunA17_Chr5g0394211 | 28.685 | 251 | 136 | 10 | 7 | 224 | 43 | 283 | 8.91e-22 | 92.0 |
Msa0388690 | MtrunA17_Chr4g0045191 | 30.851 | 188 | 97 | 6 | 18 | 182 | 29 | 206 | 1.85e-20 | 87.8 |
Msa0388690 | MtrunA17_Chr6g0474611 | 37.079 | 89 | 53 | 2 | 135 | 220 | 3 | 91 | 3.25e-12 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0388690 | AT5G06570.1 | 52.590 | 251 | 88 | 6 | 1 | 222 | 1 | 249 | 5.83e-80 | 243 |
Msa0388690 | AT5G06570.2 | 52.590 | 251 | 88 | 6 | 1 | 222 | 1 | 249 | 5.83e-80 | 243 |
Msa0388690 | AT5G06570.3 | 52.590 | 251 | 88 | 6 | 1 | 222 | 16 | 264 | 7.61e-80 | 243 |
Msa0388690 | AT5G06570.4 | 52.590 | 251 | 88 | 6 | 1 | 222 | 16 | 264 | 7.61e-80 | 243 |
Msa0388690 | AT5G16080.1 | 36.777 | 242 | 123 | 5 | 7 | 221 | 28 | 266 | 2.76e-44 | 151 |
Msa0388690 | AT5G62180.1 | 37.200 | 250 | 119 | 7 | 3 | 220 | 2 | 245 | 7.63e-41 | 142 |
Msa0388690 | AT2G45610.1 | 38.049 | 205 | 100 | 5 | 44 | 223 | 49 | 251 | 2.60e-39 | 138 |
Msa0388690 | AT2G45600.1 | 35.021 | 237 | 111 | 7 | 15 | 221 | 16 | 239 | 2.25e-36 | 130 |
Msa0388690 | AT1G68620.1 | 33.333 | 240 | 127 | 6 | 7 | 220 | 23 | 255 | 1.25e-35 | 129 |
Msa0388690 | AT3G63010.1 | 33.175 | 211 | 91 | 6 | 49 | 222 | 70 | 267 | 1.19e-27 | 108 |
Msa0388690 | AT1G19190.1 | 28.326 | 233 | 136 | 6 | 15 | 222 | 13 | 239 | 2.07e-26 | 103 |
Msa0388690 | AT5G23530.1 | 33.624 | 229 | 109 | 10 | 20 | 219 | 35 | 249 | 2.81e-26 | 103 |
Msa0388690 | AT3G48690.1 | 29.289 | 239 | 140 | 8 | 7 | 219 | 5 | 240 | 1.03e-25 | 102 |
Msa0388690 | AT5G27320.1 | 33.333 | 219 | 97 | 8 | 39 | 222 | 61 | 265 | 2.89e-25 | 101 |
Msa0388690 | AT1G47480.1 | 27.004 | 237 | 138 | 6 | 10 | 224 | 11 | 234 | 3.31e-25 | 100 |
Msa0388690 | AT1G49640.1 | 29.648 | 199 | 106 | 7 | 7 | 180 | 6 | 195 | 1.37e-24 | 99.4 |
Msa0388690 | AT3G05120.1 | 31.455 | 213 | 97 | 7 | 45 | 221 | 67 | 266 | 1.18e-23 | 97.1 |
Msa0388690 | AT1G49650.1 | 31.443 | 194 | 99 | 7 | 14 | 180 | 68 | 254 | 5.01e-22 | 93.2 |
Msa0388690 | AT3G48700.1 | 27.160 | 243 | 144 | 7 | 7 | 219 | 5 | 244 | 7.62e-22 | 92.0 |
Msa0388690 | AT1G49660.1 | 29.146 | 199 | 110 | 7 | 7 | 179 | 5 | 198 | 5.24e-19 | 84.0 |
Msa0388690 | AT2G03550.1 | 27.234 | 235 | 135 | 8 | 14 | 222 | 12 | 236 | 5.87e-19 | 84.0 |
Find 67 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACATAACCTCTTATTCTTAC+AGG | 0.242199 | 3_1:-93147907 | None:intergenic |
TTTATTATGGGCGACTCTTC+TGG | 0.255612 | 3_1:+93147826 | Msa0388690:CDS |
CTTTGACAGTGTGTTTATTA+TGG | 0.269266 | 3_1:+93147813 | Msa0388690:CDS |
CCAGTGATTGTGTTCCTTCA+TGG | 0.273519 | 3_1:+93147568 | Msa0388690:CDS |
TCAAGATTCAATGTTTGTTC+TGG | 0.294664 | 3_1:-93147985 | None:intergenic |
TGGAGGACCTTCCTCAGATT+TGG | 0.297434 | 3_1:-93147965 | None:intergenic |
CACCAGCTCGCGGTTCGGTT+TGG | 0.326565 | 3_1:+93147862 | Msa0388690:CDS |
TTCTTGTTGTTGATGTTGTT+TGG | 0.341111 | 3_1:-93147535 | None:intergenic |
CATCCATTGGCGAATCCATT+TGG | 0.361125 | 3_1:+93150583 | Msa0388690:CDS |
TTTGACAGTGTGTTTATTAT+GGG | 0.375770 | 3_1:+93147814 | Msa0388690:CDS |
ACTGAGTTGTCTTCTATTGT+GGG | 0.382901 | 3_1:-93147454 | None:intergenic |
CAGGGGTTGAGCCATGGTTA+TGG | 0.420795 | 3_1:+93147763 | Msa0388690:CDS |
GAAGTTGTTAGAACGGCAAA+TGG | 0.428164 | 3_1:-93147419 | None:intergenic |
TGTGAGGTGGCTTCAAAGGC+AGG | 0.428633 | 3_1:+93147744 | Msa0388690:CDS |
ATTGAACCTGTAAGAATAAG+AGG | 0.436336 | 3_1:+93147901 | Msa0388690:CDS |
TACTGAGTTGTCTTCTATTG+TGG | 0.438893 | 3_1:-93147455 | None:intergenic |
GTCGAAAAGACAGTCTTTGA+AGG | 0.443728 | 3_1:-93147479 | None:intergenic |
TTGCTCACCAGCTCGCGGTT+CGG | 0.462960 | 3_1:+93147857 | Msa0388690:CDS |
TCTGGTGCAAGCCGGTAGTC+CGG | 0.481494 | 3_1:-93147682 | None:intergenic |
GCTCGCGGTTCGGTTTGGAT+TGG | 0.481933 | 3_1:+93147867 | Msa0388690:CDS |
AACCGTCGTTATAGAGTTGA+AGG | 0.492510 | 3_1:-93147396 | None:intergenic |
GCAGCTGGAAGACGGTGCTC+TGG | 0.503385 | 3_1:-93147700 | None:intergenic |
GAAATTTGAAGTTGTTAGAA+CGG | 0.506659 | 3_1:-93147426 | None:intergenic |
AGATTCAATGTTTGTTCTGG+AGG | 0.507064 | 3_1:-93147982 | None:intergenic |
TGATCTCTACTCTCTCCAAC+AGG | 0.510331 | 3_1:-93150562 | None:intergenic |
TGGTGGTTGCACCGGACTAC+CGG | 0.511979 | 3_1:+93147671 | Msa0388690:CDS |
AAGCTGTGAGGTGGCTTCAA+AGG | 0.513473 | 3_1:+93147740 | Msa0388690:CDS |
TCAAGCACTGGTGGTTGCAC+CGG | 0.513886 | 3_1:+93147663 | Msa0388690:CDS |
TGAGGTGGCTTCAAAGGCAG+GGG | 0.515102 | 3_1:+93147746 | Msa0388690:CDS |
CCATGAAGGAACACAATCAC+TGG | 0.524194 | 3_1:-93147568 | None:intergenic |
ACAGCATCATCAATTGCAGC+TGG | 0.532717 | 3_1:-93147715 | None:intergenic |
AATCCTCTACTACGTGGGGA+AGG | 0.539422 | 3_1:-93147363 | None:intergenic |
GACGGTGCTCTGGTGCAAGC+CGG | 0.547439 | 3_1:-93147690 | None:intergenic |
CGCTGGACTTCAAGCACTGG+TGG | 0.553404 | 3_1:+93147654 | Msa0388690:CDS |
TTCCCTTCCCCACGTAGTAG+AGG | 0.554411 | 3_1:+93147360 | Msa0388690:CDS |
TGAATCTTGACTTACTAGAC+AGG | 0.555572 | 3_1:+93147998 | Msa0388690:CDS |
CAAAGGCAGGGGTTGAGCCA+TGG | 0.559944 | 3_1:+93147757 | Msa0388690:CDS |
ATCCAAACCGAACCGCGAGC+TGG | 0.561333 | 3_1:-93147864 | None:intergenic |
TGTCCAAATGGATTCGCCAA+TGG | 0.564040 | 3_1:-93150586 | None:intergenic |
TTCCTTCAACTCTATAACGA+CGG | 0.566776 | 3_1:+93147394 | Msa0388690:CDS |
GTGAGGTGGCTTCAAAGGCA+GGG | 0.568163 | 3_1:+93147745 | Msa0388690:CDS |
CATCAATTGCAGCTGGAAGA+CGG | 0.570423 | 3_1:-93147708 | None:intergenic |
AACAAAAGCCTCCACCATGA+AGG | 0.573822 | 3_1:-93147582 | None:intergenic |
ATTATGGGCGACTCTTCTGG+CGG | 0.575291 | 3_1:+93147829 | Msa0388690:CDS |
TGATGTTGTTTGGTTTGTAG+AGG | 0.582952 | 3_1:-93147525 | None:intergenic |
CCACGTAGTAGAGGATTGCA+TGG | 0.583298 | 3_1:+93147369 | Msa0388690:CDS |
TTATGGGCGACTCTTCTGGC+GGG | 0.583356 | 3_1:+93147830 | Msa0388690:CDS |
ATCCTCTACTACGTGGGGAA+GGG | 0.583978 | 3_1:-93147362 | None:intergenic |
AGCCGCTGGACTTCAAGCAC+TGG | 0.585205 | 3_1:+93147651 | Msa0388690:intron |
ACTGTCAAAGTCAACATCAC+TGG | 0.588550 | 3_1:-93147800 | None:intergenic |
CATGCAATCCTCTACTACGT+GGG | 0.592592 | 3_1:-93147368 | None:intergenic |
TCGGTTTGGATTGGATCGAA+CGG | 0.608973 | 3_1:+93147876 | Msa0388690:CDS |
TGGAGGTTGTCAATGCCTGT+TGG | 0.608993 | 3_1:+93150547 | Msa0388690:CDS |
TTGGCGAATCCATTTGGACA+TGG | 0.609677 | 3_1:+93150589 | Msa0388690:CDS |
ATGCTGTCGAAGCTGTGAGG+TGG | 0.615332 | 3_1:+93147731 | Msa0388690:CDS |
AGAGAGTAGAGATCATCCAT+TGG | 0.627428 | 3_1:+93150570 | Msa0388690:CDS |
CACCAGTGCTTGAAGTCCAG+CGG | 0.635664 | 3_1:-93147653 | None:intergenic |
GCCATGGTTATGGAGAGCCA+TGG | 0.645828 | 3_1:+93147773 | Msa0388690:CDS |
ATGCAATCCTCTACTACGTG+GGG | 0.648507 | 3_1:-93147367 | None:intergenic |
CCATGCAATCCTCTACTACG+TGG | 0.649967 | 3_1:-93147369 | None:intergenic |
CACGTAGTAGAGGATTGCAT+GGG | 0.651059 | 3_1:+93147370 | Msa0388690:CDS |
GGAAGTACGGACCAAATCTG+AGG | 0.652219 | 3_1:+93147954 | Msa0388690:CDS |
GTACGGACCAAATCTGAGGA+AGG | 0.656456 | 3_1:+93147958 | Msa0388690:CDS |
GAATATTGCTCACCAGCTCG+CGG | 0.656723 | 3_1:+93147852 | Msa0388690:CDS |
TCAACATCACTGGTCAACCA+TGG | 0.667320 | 3_1:-93147790 | None:intergenic |
ACCATGGCTCTCCATAACCA+TGG | 0.673171 | 3_1:-93147774 | None:intergenic |
ATGATGCTGTCGAAGCTGTG+AGG | 0.759020 | 3_1:+93147728 | Msa0388690:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTATTATTATTATTATAAA+GGG | - | chr3_1:93150000-93150019 | None:intergenic | 0.0% |
!! | TATTATTATTATTATTATAA+AGG | - | chr3_1:93150001-93150020 | None:intergenic | 0.0% |
!!! | AATTAGAATCAATTATTTTA+GGG | - | chr3_1:93148059-93148078 | None:intergenic | 10.0% |
!!! | AAATTAGAATCAATTATTTT+AGG | - | chr3_1:93148060-93148079 | None:intergenic | 10.0% |
!! | AAAATATTATTATCTCTAAT+CGG | + | chr3_1:93149328-93149347 | Msa0388690:intron | 10.0% |
!! | AATAATATATTAAAATAGCA+AGG | + | chr3_1:93149902-93149921 | Msa0388690:intron | 10.0% |
!! | ATAATATATTAAAATAGCAA+GGG | + | chr3_1:93149903-93149922 | Msa0388690:intron | 10.0% |
!!! | ATATTTTGTTCTAAAATGTT+CGG | + | chr3_1:93148160-93148179 | Msa0388690:intron | 15.0% |
!!! | TAAAAGAATCATTCATTTTT+AGG | - | chr3_1:93148288-93148307 | None:intergenic | 15.0% |
!!! | TATCTTTCATTTTGTATTTA+TGG | + | chr3_1:93148419-93148438 | Msa0388690:intron | 15.0% |
!! | ACAATATTACAATACAAATT+TGG | + | chr3_1:93148845-93148864 | Msa0388690:intron | 15.0% |
!! | CATTTAATACTTAATGTATT+TGG | + | chr3_1:93149011-93149030 | Msa0388690:intron | 15.0% |
!!! | GATTAGAGATAATAATATTT+TGG | - | chr3_1:93149329-93149348 | None:intergenic | 15.0% |
!!! | TTAATATTTTACACAAATCA+AGG | + | chr3_1:93149475-93149494 | Msa0388690:intron | 15.0% |
!! | AATAAAATATTAAATGACCA+AGG | - | chr3_1:93149556-93149575 | None:intergenic | 15.0% |
!! | TTAGCAAATATATGTAAAAT+TGG | - | chr3_1:93150487-93150506 | None:intergenic | 15.0% |
!!! | AGAATTTCTCATCTAATTTT+CGG | + | chr3_1:93148114-93148133 | Msa0388690:intron | 20.0% |
!! | ATGTAAGTATTATATATCAG+AGG | - | chr3_1:93148347-93148366 | None:intergenic | 20.0% |
!!! | AATTTTGCACTTTTTTTTAG+AGG | + | chr3_1:93148487-93148506 | Msa0388690:intron | 20.0% |
!! | TGTAAAATAGTCAAATGAAT+TGG | + | chr3_1:93148533-93148552 | Msa0388690:intron | 20.0% |
!!! | TTCATTATTTTCAAAGAAGT+TGG | - | chr3_1:93148683-93148702 | None:intergenic | 20.0% |
!! | CATTGAATACATAATGTATT+TGG | - | chr3_1:93149049-93149068 | None:intergenic | 20.0% |
!!! | TAAGCAAAAATGTACTTTTT+AGG | - | chr3_1:93149074-93149093 | None:intergenic | 20.0% |
!!! | TTGCTAACAAGTTTTTTTTA+AGG | - | chr3_1:93149303-93149322 | None:intergenic | 20.0% |
!!! | TGATGGTTGTTATTAAAATT+AGG | + | chr3_1:93149368-93149387 | Msa0388690:intron | 20.0% |
!! | TTAAAAAGTGACACTTAAAA+AGG | - | chr3_1:93149459-93149478 | None:intergenic | 20.0% |
!! | TCTCCACAATAAATAATTAA+GGG | + | chr3_1:93149589-93149608 | Msa0388690:intron | 20.0% |
!! | TTACCCTTAATTATTTATTG+TGG | - | chr3_1:93149595-93149614 | None:intergenic | 20.0% |
!! | TAAATAATTAAGGGTAATGT+CGG | + | chr3_1:93149598-93149617 | Msa0388690:intron | 20.0% |
!!! | ATTTCCAATTTTTCAGATTT+TGG | + | chr3_1:93150527-93150546 | Msa0388690:intron | 20.0% |
!! | GAAATTTGAAGTTGTTAGAA+CGG | - | chr3_1:93147429-93147448 | None:intergenic | 25.0% |
! | ATACAACAATTGTGAATATG+GGG | - | chr3_1:93147625-93147644 | None:intergenic | 25.0% |
! | CATACAACAATTGTGAATAT+GGG | - | chr3_1:93147626-93147645 | None:intergenic | 25.0% |
! | TCATACAACAATTGTGAATA+TGG | - | chr3_1:93147627-93147646 | None:intergenic | 25.0% |
! | TTTGACAGTGTGTTTATTAT+GGG | + | chr3_1:93147814-93147833 | Msa0388690:CDS | 25.0% |
!! | AATAAGAGGTTATGTTTTGT+TGG | + | chr3_1:93147915-93147934 | Msa0388690:CDS | 25.0% |
! | AGAGCTTGAATTTGATATAT+AGG | - | chr3_1:93148216-93148235 | None:intergenic | 25.0% |
! | ACTTCAACGAAGAAATAATT+TGG | - | chr3_1:93148239-93148258 | None:intergenic | 25.0% |
!! | CTTTGAAAATAATGAAGCAT+TGG | + | chr3_1:93148687-93148706 | Msa0388690:intron | 25.0% |
! | TAAAACTAAAACAAGTGAAG+TGG | - | chr3_1:93148784-93148803 | None:intergenic | 25.0% |
! | ACGACATTCTTTATTATACT+TGG | - | chr3_1:93148883-93148902 | None:intergenic | 25.0% |
! | AGTATAATAAAGAATGTCGT+TGG | + | chr3_1:93148883-93148902 | Msa0388690:intron | 25.0% |
!! | TTTTTGCTTATAAATGTGAC+CGG | + | chr3_1:93149084-93149103 | Msa0388690:intron | 25.0% |
! | AATTTCCATGACATCATATT+AGG | + | chr3_1:93149118-93149137 | Msa0388690:intron | 25.0% |
! | ACACAAAGTCAACTAAATAT+TGG | - | chr3_1:93149180-93149199 | None:intergenic | 25.0% |
! | ACAATAGTATTATGGAATGA+TGG | + | chr3_1:93149351-93149370 | Msa0388690:intron | 25.0% |
! | CTCTCCACAATAAATAATTA+AGG | + | chr3_1:93149588-93149607 | Msa0388690:intron | 25.0% |
! | TTTGAAAGTGACAGTTAAAT+AGG | + | chr3_1:93149649-93149668 | Msa0388690:intron | 25.0% |
! | GTAATCTTTAACAACTTTAG+TGG | + | chr3_1:93149718-93149737 | Msa0388690:intron | 25.0% |
! | ACTTGTGGTTCATTAAATTA+TGG | + | chr3_1:93149775-93149794 | Msa0388690:intron | 25.0% |
!!! | TCATCAACTTTTTCCAATAT+AGG | + | chr3_1:93149818-93149837 | Msa0388690:intron | 25.0% |
!! | TACTATTAGTTTGAAAGCAA+TGG | - | chr3_1:93149847-93149866 | None:intergenic | 25.0% |
! | ATTGCTTTCAAACTAATAGT+AGG | + | chr3_1:93149846-93149865 | Msa0388690:intron | 25.0% |
! | TACAAGTAATATTTACCACA+TGG | - | chr3_1:93149875-93149894 | None:intergenic | 25.0% |
! | AAGATTGAAAATCTTTACAC+TGG | - | chr3_1:93149958-93149977 | None:intergenic | 25.0% |
! | TTATAAAGGGTTCTATGATT+TGG | - | chr3_1:93149987-93150006 | None:intergenic | 25.0% |
!! | TTCTTGTTGTTGATGTTGTT+TGG | - | chr3_1:93147538-93147557 | None:intergenic | 30.0% |
CTTTGACAGTGTGTTTATTA+TGG | + | chr3_1:93147813-93147832 | Msa0388690:CDS | 30.0% | |
ATTGAACCTGTAAGAATAAG+AGG | + | chr3_1:93147901-93147920 | Msa0388690:CDS | 30.0% | |
ACATAACCTCTTATTCTTAC+AGG | - | chr3_1:93147910-93147929 | None:intergenic | 30.0% | |
TCAAGATTCAATGTTTGTTC+TGG | - | chr3_1:93147988-93148007 | None:intergenic | 30.0% | |
AATACTTACATCGTTCATTC+TGG | + | chr3_1:93148356-93148375 | Msa0388690:intron | 30.0% | |
! | TATTTATGGTAGCGATTAGT+TGG | + | chr3_1:93148433-93148452 | Msa0388690:intron | 30.0% |
GAGCCACATTATAATATTGT+GGG | - | chr3_1:93148594-93148613 | None:intergenic | 30.0% | |
AGAGCCACATTATAATATTG+TGG | - | chr3_1:93148595-93148614 | None:intergenic | 30.0% | |
!!! | GTTTTAGTTTTAGCCTTATC+TGG | + | chr3_1:93148792-93148811 | Msa0388690:intron | 30.0% |
TTTCACCTAATATGATGTCA+TGG | - | chr3_1:93149126-93149145 | None:intergenic | 30.0% | |
CTAATCGGACAATAGTATTA+TGG | + | chr3_1:93149343-93149362 | Msa0388690:intron | 30.0% | |
AAGTGACACTTAAAAAGGAA+CGG | - | chr3_1:93149690-93149709 | None:intergenic | 30.0% | |
TACTTTCACTATAATAGCCT+TGG | + | chr3_1:93149536-93149555 | Msa0388690:intron | 30.0% | |
TCCAAAAGTGACACTTAAAA+AGG | + | chr3_1:93149685-93149704 | Msa0388690:intron | 30.0% | |
!!! | TCCTTTTTAAGTGTCACTTT+TGG | - | chr3_1:93149455-93149474 | None:intergenic | 30.0% |
AAGTGACACTTAAAAAGGAA+CGG | + | chr3_1:93149690-93149709 | Msa0388690:intron | 30.0% | |
AAAGCAATGGAAACCTATAT+TGG | - | chr3_1:93149834-93149853 | None:intergenic | 30.0% | |
!!! | GTACGTGTAGCATTTTTTTT+AGG | - | chr3_1:93149933-93149952 | None:intergenic | 30.0% |
!! | TCCAATTTTTCAGATTTTGG+AGG | + | chr3_1:93150530-93150549 | Msa0388690:intron | 30.0% |
ACCTCCAAAATCTGAAAAAT+TGG | - | chr3_1:93150534-93150553 | None:intergenic | 30.0% | |
TTCCTTCAACTCTATAACGA+CGG | + | chr3_1:93147394-93147413 | Msa0388690:CDS | 35.0% | |
ACTGAGTTGTCTTCTATTGT+GGG | - | chr3_1:93147457-93147476 | None:intergenic | 35.0% | |
TACTGAGTTGTCTTCTATTG+TGG | - | chr3_1:93147458-93147477 | None:intergenic | 35.0% | |
!! | TGATGTTGTTTGGTTTGTAG+AGG | - | chr3_1:93147528-93147547 | None:intergenic | 35.0% |
AGATTCAATGTTTGTTCTGG+AGG | - | chr3_1:93147985-93148004 | None:intergenic | 35.0% | |
TGAATCTTGACTTACTAGAC+AGG | + | chr3_1:93147998-93148017 | Msa0388690:CDS | 35.0% | |
CGGTAGAATCATGAATTGAA+TGG | + | chr3_1:93148134-93148153 | Msa0388690:intron | 35.0% | |
CCACATTATAATATTGTGGG+TGG | - | chr3_1:93148591-93148610 | None:intergenic | 35.0% | |
CCACCCACAATATTATAATG+TGG | + | chr3_1:93148588-93148607 | Msa0388690:intron | 35.0% | |
!!! | TGTGGCTCTTTTTTTACAGT+AGG | + | chr3_1:93148606-93148625 | Msa0388690:intron | 35.0% |
CATTGGTATCCAAAGTTATC+TGG | + | chr3_1:93148704-93148723 | Msa0388690:intron | 35.0% | |
CATTTAATTACCTACGTCCA+TGG | - | chr3_1:93148744-93148763 | None:intergenic | 35.0% | |
CATGGACGTAGGTAATTAAA+TGG | + | chr3_1:93148742-93148761 | Msa0388690:intron | 35.0% | |
TGAAGTGGTTGTGTTTATTG+GGG | - | chr3_1:93148769-93148788 | None:intergenic | 35.0% | |
GTGAAGTGGTTGTGTTTATT+GGG | - | chr3_1:93148770-93148789 | None:intergenic | 35.0% | |
AGTGAAGTGGTTGTGTTTAT+TGG | - | chr3_1:93148771-93148790 | None:intergenic | 35.0% | |
ACTAATAGTAGGTTTCCATG+TGG | + | chr3_1:93149857-93149876 | Msa0388690:intron | 35.0% | |
AACCGTCGTTATAGAGTTGA+AGG | - | chr3_1:93147399-93147418 | None:intergenic | 40.0% | |
GAAGTTGTTAGAACGGCAAA+TGG | - | chr3_1:93147422-93147441 | None:intergenic | 40.0% | |
GTCGAAAAGACAGTCTTTGA+AGG | - | chr3_1:93147482-93147501 | None:intergenic | 40.0% | |
ACTGTCAAAGTCAACATCAC+TGG | - | chr3_1:93147803-93147822 | None:intergenic | 40.0% | |
TTTATTATGGGCGACTCTTC+TGG | + | chr3_1:93147826-93147845 | Msa0388690:CDS | 40.0% | |
TTGTGGGTGGAAATTGTGAA+CGG | - | chr3_1:93148578-93148597 | None:intergenic | 40.0% | |
ATCCAAAGTTATCTGGCCAA+AGG | + | chr3_1:93148711-93148730 | Msa0388690:intron | 40.0% | |
CGCTTATAAATGTGACCAGA+GGG | - | chr3_1:93148971-93148990 | None:intergenic | 40.0% | |
TCGCTTATAAATGTGACCAG+AGG | - | chr3_1:93148972-93148991 | None:intergenic | 40.0% | |
TTGCTTATAAATGTGACCGG+AGG | + | chr3_1:93149087-93149106 | Msa0388690:intron | 40.0% | |
TGCTTATAAATGTGACCGGA+GGG | + | chr3_1:93149088-93149107 | Msa0388690:intron | 40.0% | |
TGGAAATTGAATACTCCCTC+CGG | - | chr3_1:93149106-93149125 | None:intergenic | 40.0% | |
GACACTTAAAAAGGAACGGA+TGG | + | chr3_1:93149694-93149713 | Msa0388690:intron | 40.0% | |
! | TAACAACTTTAGTGGTGCCA+TGG | + | chr3_1:93149726-93149745 | Msa0388690:intron | 40.0% |
AGAGAGTAGAGATCATCCAT+TGG | + | chr3_1:93150570-93150589 | Msa0388690:CDS | 40.0% | |
ATGCAATCCTCTACTACGTG+GGG | - | chr3_1:93147370-93147389 | None:intergenic | 45.0% | |
CATGCAATCCTCTACTACGT+GGG | - | chr3_1:93147371-93147390 | None:intergenic | 45.0% | |
CACGTAGTAGAGGATTGCAT+GGG | + | chr3_1:93147370-93147389 | Msa0388690:CDS | 45.0% | |
CCATGAAGGAACACAATCAC+TGG | - | chr3_1:93147571-93147590 | None:intergenic | 45.0% | |
CCAGTGATTGTGTTCCTTCA+TGG | + | chr3_1:93147568-93147587 | Msa0388690:CDS | 45.0% | |
GTGATTGTGTTCCTTCATGG+TGG | + | chr3_1:93147571-93147590 | Msa0388690:intron | 45.0% | |
ATTGTGTTCCTTCATGGTGG+AGG | + | chr3_1:93147574-93147593 | Msa0388690:intron | 45.0% | |
AACAAAAGCCTCCACCATGA+AGG | - | chr3_1:93147585-93147604 | None:intergenic | 45.0% | |
!! | CATGGTGGAGGCTTTTGTTT+CGG | + | chr3_1:93147586-93147605 | Msa0388690:intron | 45.0% |
TGTGAATATGGGGCCATGTA+CGG | - | chr3_1:93147615-93147634 | None:intergenic | 45.0% | |
CATCAATTGCAGCTGGAAGA+CGG | - | chr3_1:93147711-93147730 | None:intergenic | 45.0% | |
ACAGCATCATCAATTGCAGC+TGG | - | chr3_1:93147718-93147737 | None:intergenic | 45.0% | |
TCAACATCACTGGTCAACCA+TGG | - | chr3_1:93147793-93147812 | None:intergenic | 45.0% | |
!! | TCGGTTTGGATTGGATCGAA+CGG | + | chr3_1:93147876-93147895 | Msa0388690:CDS | 45.0% |
!!! | GTTTTGTTGGCGCCGTTTTT+TGG | + | chr3_1:93147928-93147947 | Msa0388690:CDS | 45.0% |
CTTGACTTACTAGACAGGTG+AGG | + | chr3_1:93148003-93148022 | Msa0388690:intron | 45.0% | |
TTACCTACGTCCATGGCTAT+TGG | - | chr3_1:93148737-93148756 | None:intergenic | 45.0% | |
GGAACGGACGTAGTAAAAGA+GGG | - | chr3_1:93149438-93149457 | None:intergenic | 45.0% | |
AGGAACGGACGTAGTAAAAG+AGG | - | chr3_1:93149439-93149458 | None:intergenic | 45.0% | |
GCGACATCATGAGAAACTTG+TGG | + | chr3_1:93149760-93149779 | Msa0388690:intron | 45.0% | |
TGATCTCTACTCTCTCCAAC+AGG | - | chr3_1:93150565-93150584 | None:intergenic | 45.0% | |
CATCCATTGGCGAATCCATT+TGG | + | chr3_1:93150583-93150602 | Msa0388690:CDS | 45.0% | |
! | TGTCCAAATGGATTCGCCAA+TGG | - | chr3_1:93150589-93150608 | None:intergenic | 45.0% |
TTGGCGAATCCATTTGGACA+TGG | + | chr3_1:93150589-93150608 | Msa0388690:CDS | 45.0% | |
ATCCTCTACTACGTGGGGAA+GGG | - | chr3_1:93147365-93147384 | None:intergenic | 50.0% | |
AATCCTCTACTACGTGGGGA+AGG | - | chr3_1:93147366-93147385 | None:intergenic | 50.0% | |
CCATGCAATCCTCTACTACG+TGG | - | chr3_1:93147372-93147391 | None:intergenic | 50.0% | |
CCACGTAGTAGAGGATTGCA+TGG | + | chr3_1:93147369-93147388 | Msa0388690:CDS | 50.0% | |
TTTGTTTCGGCTCCCGTACA+TGG | + | chr3_1:93147599-93147618 | Msa0388690:intron | 50.0% | |
GTGAATATGGGGCCATGTAC+GGG | - | chr3_1:93147614-93147633 | None:intergenic | 50.0% | |
TGTTGTATGAGTCTAGCCGC+TGG | + | chr3_1:93147637-93147656 | Msa0388690:intron | 50.0% | |
ATGATGCTGTCGAAGCTGTG+AGG | + | chr3_1:93147728-93147747 | Msa0388690:CDS | 50.0% | |
AAGCTGTGAGGTGGCTTCAA+AGG | + | chr3_1:93147740-93147759 | Msa0388690:CDS | 50.0% | |
ACCATGGCTCTCCATAACCA+TGG | - | chr3_1:93147777-93147796 | None:intergenic | 50.0% | |
ATTATGGGCGACTCTTCTGG+CGG | + | chr3_1:93147829-93147848 | Msa0388690:CDS | 50.0% | |
GAATATTGCTCACCAGCTCG+CGG | + | chr3_1:93147852-93147871 | Msa0388690:CDS | 50.0% | |
!!! | TTGTTGGCGCCGTTTTTTGG+CGG | + | chr3_1:93147931-93147950 | Msa0388690:CDS | 50.0% |
CGTACTTCCCCGCCAAAAAA+CGG | - | chr3_1:93147943-93147962 | None:intergenic | 50.0% | |
!!! | CGTTTTTTGGCGGGGAAGTA+CGG | + | chr3_1:93147941-93147960 | Msa0388690:CDS | 50.0% |
! | GGAAGTACGGACCAAATCTG+AGG | + | chr3_1:93147954-93147973 | Msa0388690:CDS | 50.0% |
GTACGGACCAAATCTGAGGA+AGG | + | chr3_1:93147958-93147977 | Msa0388690:CDS | 50.0% | |
TGGAGGACCTTCCTCAGATT+TGG | - | chr3_1:93147968-93147987 | None:intergenic | 50.0% | |
GGCCTTTGGCCAGATAACTT+TGG | - | chr3_1:93148716-93148735 | None:intergenic | 50.0% | |
GCACGTCACTCTTCCAGATA+AGG | - | chr3_1:93148808-93148827 | None:intergenic | 50.0% | |
GAGCAGACAAATACTCCCTC+TGG | + | chr3_1:93148953-93148972 | Msa0388690:intron | 50.0% | |
GTTTCTCATGATGTCGCGTG+TGG | - | chr3_1:93149757-93149776 | None:intergenic | 50.0% | |
TGGAGGTTGTCAATGCCTGT+TGG | + | chr3_1:93150547-93150566 | Msa0388690:CDS | 50.0% | |
TTCCCTTCCCCACGTAGTAG+AGG | + | chr3_1:93147360-93147379 | Msa0388690:CDS | 55.0% | |
CACCAGTGCTTGAAGTCCAG+CGG | - | chr3_1:93147656-93147675 | None:intergenic | 55.0% | |
!! | TCAAGCACTGGTGGTTGCAC+CGG | + | chr3_1:93147663-93147682 | Msa0388690:CDS | 55.0% |
ATGCTGTCGAAGCTGTGAGG+TGG | + | chr3_1:93147731-93147750 | Msa0388690:CDS | 55.0% | |
TGTGAGGTGGCTTCAAAGGC+AGG | + | chr3_1:93147744-93147763 | Msa0388690:CDS | 55.0% | |
GTGAGGTGGCTTCAAAGGCA+GGG | + | chr3_1:93147745-93147764 | Msa0388690:CDS | 55.0% | |
TGAGGTGGCTTCAAAGGCAG+GGG | + | chr3_1:93147746-93147765 | Msa0388690:CDS | 55.0% | |
CAGGGGTTGAGCCATGGTTA+TGG | + | chr3_1:93147763-93147782 | Msa0388690:CDS | 55.0% | |
GCCATGGTTATGGAGAGCCA+TGG | + | chr3_1:93147773-93147792 | Msa0388690:CDS | 55.0% | |
TTATGGGCGACTCTTCTGGC+GGG | + | chr3_1:93147830-93147849 | Msa0388690:CDS | 55.0% | |
!!! | TGTTGGCGCCGTTTTTTGGC+GGG | + | chr3_1:93147932-93147951 | Msa0388690:CDS | 55.0% |
TGGCCAAAGGCCAATAGCCA+TGG | + | chr3_1:93148724-93148743 | Msa0388690:intron | 55.0% | |
!! | CGTCCATGGCTATTGGCCTT+TGG | - | chr3_1:93148730-93148749 | None:intergenic | 55.0% |
AGGCCAATAGCCATGGACGT+AGG | + | chr3_1:93148731-93148750 | Msa0388690:intron | 55.0% | |
TCTCATGATGTCGCGTGTGG+TGG | - | chr3_1:93149754-93149773 | None:intergenic | 55.0% | |
AGCCGCTGGACTTCAAGCAC+TGG | + | chr3_1:93147651-93147670 | Msa0388690:intron | 60.0% | |
!! | CGCTGGACTTCAAGCACTGG+TGG | + | chr3_1:93147654-93147673 | Msa0388690:CDS | 60.0% |
TGGTGGTTGCACCGGACTAC+CGG | + | chr3_1:93147671-93147690 | Msa0388690:CDS | 60.0% | |
TCTGGTGCAAGCCGGTAGTC+CGG | - | chr3_1:93147685-93147704 | None:intergenic | 60.0% | |
CAAAGGCAGGGGTTGAGCCA+TGG | + | chr3_1:93147757-93147776 | Msa0388690:CDS | 60.0% | |
TTGCTCACCAGCTCGCGGTT+CGG | + | chr3_1:93147857-93147876 | Msa0388690:CDS | 60.0% | |
ATCCAAACCGAACCGCGAGC+TGG | - | chr3_1:93147867-93147886 | None:intergenic | 60.0% | |
!! | GCTCGCGGTTCGGTTTGGAT+TGG | + | chr3_1:93147867-93147886 | Msa0388690:CDS | 60.0% |
!!! | GTTGGCGCCGTTTTTTGGCG+GGG | + | chr3_1:93147933-93147952 | Msa0388690:CDS | 60.0% |
GACGGTGCTCTGGTGCAAGC+CGG | - | chr3_1:93147693-93147712 | None:intergenic | 65.0% | |
GCAGCTGGAAGACGGTGCTC+TGG | - | chr3_1:93147703-93147722 | None:intergenic | 65.0% | |
!! | CACCAGCTCGCGGTTCGGTT+TGG | + | chr3_1:93147862-93147881 | Msa0388690:CDS | 65.0% |
! | TGTCGCGTGTGGTGGTGCCA+TGG | - | chr3_1:93149746-93149765 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 93147355 | 93150612 | 93147355 | ID=Msa0388690;Name=Msa0388690 |
chr3_1 | mRNA | 93147355 | 93150612 | 93147355 | ID=Msa0388690-mRNA-1;Parent=Msa0388690;Name=Msa0388690-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.5|0|1|0|0|3|0|224 |
chr3_1 | exon | 93147355 | 93147589 | 93147355 | ID=Msa0388690-mRNA-1:exon:26241;Parent=Msa0388690-mRNA-1 |
chr3_1 | exon | 93147653 | 93148019 | 93147653 | ID=Msa0388690-mRNA-1:exon:26242;Parent=Msa0388690-mRNA-1 |
chr3_1 | exon | 93150543 | 93150612 | 93150543 | ID=Msa0388690-mRNA-1:exon:26243;Parent=Msa0388690-mRNA-1 |
chr3_1 | CDS | 93147355 | 93147589 | 93147355 | ID=Msa0388690-mRNA-1:cds;Parent=Msa0388690-mRNA-1 |
chr3_1 | CDS | 93147653 | 93148019 | 93147653 | ID=Msa0388690-mRNA-1:cds;Parent=Msa0388690-mRNA-1 |
chr3_1 | CDS | 93150543 | 93150612 | 93150543 | ID=Msa0388690-mRNA-1:cds;Parent=Msa0388690-mRNA-1 |
Gene Sequence |
Protein sequence |