AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0388690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388690 MtrunA17_Chr7g0268091 82.041 245 21 2 1 224 1 243 1.91e-139 393
Msa0388690 MtrunA17_Chr4g0025291 51.681 238 91 4 7 222 5 240 1.69e-78 238
Msa0388690 MtrunA17_Chr1g0210121 35.223 247 121 7 7 221 26 265 4.72e-42 145
Msa0388690 MtrunA17_Chr7g0214851 34.000 250 124 9 13 224 27 273 5.25e-41 142
Msa0388690 MtrunA17_Chr8g0351201 36.066 244 128 7 3 220 7 248 2.21e-38 135
Msa0388690 MtrunA17_Chr1g0204211 36.364 231 112 6 20 224 43 264 2.71e-38 135
Msa0388690 MtrunA17_Chr6g0474411 34.649 228 117 5 19 220 27 248 2.35e-37 132
Msa0388690 MtrunA17_Chr1g0204201 34.468 235 119 5 15 220 19 247 2.91e-37 132
Msa0388690 MtrunA17_Chr8g0351211 35.983 239 113 7 15 220 9 240 4.08e-37 132
Msa0388690 MtrunA17_Chr3g0081521 32.946 258 129 8 7 224 7 260 4.58e-37 132
Msa0388690 MtrunA17_Chr6g0474491 35.081 248 122 8 3 219 5 244 1.58e-36 130
Msa0388690 MtrunA17_Chr6g0474541 35.652 230 118 6 15 220 48 271 1.56e-34 126
Msa0388690 MtrunA17_Chr6g0474471 37.019 208 95 6 41 220 47 246 3.82e-33 122
Msa0388690 MtrunA17_Chr7g0235741 33.473 239 128 7 7 220 40 272 4.20e-33 122
Msa0388690 MtrunA17_Chr1g0149271 33.184 223 118 7 14 214 10 223 1.72e-32 119
Msa0388690 MtrunA17_Chr6g0474631 33.333 231 115 6 19 220 25 245 1.21e-31 117
Msa0388690 MtrunA17_Chr3g0133701 31.356 236 121 7 14 221 14 236 3.02e-30 114
Msa0388690 MtrunA17_Chr4g0045181 31.799 239 132 7 7 220 8 240 6.13e-30 113
Msa0388690 MtrunA17_Chr8g0351171 29.958 237 127 7 20 224 17 246 8.49e-29 110
Msa0388690 MtrunA17_Chr1g0196311 37.714 175 73 5 71 222 121 282 1.06e-27 107
Msa0388690 MtrunA17_Chr4g0045131 28.814 236 140 5 7 220 48 277 3.49e-27 106
Msa0388690 MtrunA17_Chr3g0095711 29.555 247 139 8 7 224 53 293 5.27e-26 103
Msa0388690 MtrunA17_Chr5g0394251 29.388 245 142 7 7 224 13 253 1.09e-25 102
Msa0388690 MtrunA17_Chr1g0205871 32.911 237 125 9 14 222 15 245 1.18e-25 101
Msa0388690 MtrunA17_Chr6g0477231 30.455 220 106 6 39 222 53 261 1.36e-25 102
Msa0388690 MtrunA17_Chr6g0477251 28.626 262 132 8 4 222 10 259 1.45e-25 104
Msa0388690 MtrunA17_Chr6g0477251 28.626 262 132 8 4 222 564 813 9.73e-25 101
Msa0388690 MtrunA17_Chr6g0477161 30.876 217 106 6 39 222 404 609 2.22e-25 103
Msa0388690 MtrunA17_Chr6g0477161 29.508 244 118 8 22 222 28 260 7.80e-25 102
Msa0388690 MtrunA17_Chr8g0353951 28.395 243 144 7 7 224 16 253 2.49e-25 101
Msa0388690 MtrunA17_Chr4g0045121 29.258 229 134 5 14 220 18 240 2.92e-25 100
Msa0388690 MtrunA17_Chr7g0259161 35.429 175 80 5 71 222 106 270 3.68e-25 100
Msa0388690 MtrunA17_Chr1g0191301 32.864 213 95 8 45 222 67 266 7.81e-25 100
Msa0388690 MtrunA17_Chr5g0394241 28.968 252 146 8 1 222 1 249 1.39e-24 99.0
Msa0388690 MtrunA17_Chr7g0233871 29.268 246 141 7 6 224 11 250 5.15e-24 97.4
Msa0388690 MtrunA17_Chr6g0477271 31.401 207 110 5 39 222 80 277 6.46e-24 97.8
Msa0388690 MtrunA17_Chr1g0205781 27.686 242 147 6 6 224 11 247 7.11e-23 94.4
Msa0388690 MtrunA17_Chr6g0477241 29.293 198 97 6 39 204 66 252 5.97e-22 91.7
Msa0388690 MtrunA17_Chr1g0205791 28.340 247 135 8 6 224 9 241 6.44e-22 92.0
Msa0388690 MtrunA17_Chr5g0394211 28.685 251 136 10 7 224 43 283 8.91e-22 92.0
Msa0388690 MtrunA17_Chr4g0045191 30.851 188 97 6 18 182 29 206 1.85e-20 87.8
Msa0388690 MtrunA17_Chr6g0474611 37.079 89 53 2 135 220 3 91 3.25e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388690 AT5G06570.1 52.590 251 88 6 1 222 1 249 5.83e-80 243
Msa0388690 AT5G06570.2 52.590 251 88 6 1 222 1 249 5.83e-80 243
Msa0388690 AT5G06570.3 52.590 251 88 6 1 222 16 264 7.61e-80 243
Msa0388690 AT5G06570.4 52.590 251 88 6 1 222 16 264 7.61e-80 243
Msa0388690 AT5G16080.1 36.777 242 123 5 7 221 28 266 2.76e-44 151
Msa0388690 AT5G62180.1 37.200 250 119 7 3 220 2 245 7.63e-41 142
Msa0388690 AT2G45610.1 38.049 205 100 5 44 223 49 251 2.60e-39 138
Msa0388690 AT2G45600.1 35.021 237 111 7 15 221 16 239 2.25e-36 130
Msa0388690 AT1G68620.1 33.333 240 127 6 7 220 23 255 1.25e-35 129
Msa0388690 AT3G63010.1 33.175 211 91 6 49 222 70 267 1.19e-27 108
Msa0388690 AT1G19190.1 28.326 233 136 6 15 222 13 239 2.07e-26 103
Msa0388690 AT5G23530.1 33.624 229 109 10 20 219 35 249 2.81e-26 103
Msa0388690 AT3G48690.1 29.289 239 140 8 7 219 5 240 1.03e-25 102
Msa0388690 AT5G27320.1 33.333 219 97 8 39 222 61 265 2.89e-25 101
Msa0388690 AT1G47480.1 27.004 237 138 6 10 224 11 234 3.31e-25 100
Msa0388690 AT1G49640.1 29.648 199 106 7 7 180 6 195 1.37e-24 99.4
Msa0388690 AT3G05120.1 31.455 213 97 7 45 221 67 266 1.18e-23 97.1
Msa0388690 AT1G49650.1 31.443 194 99 7 14 180 68 254 5.01e-22 93.2
Msa0388690 AT3G48700.1 27.160 243 144 7 7 219 5 244 7.62e-22 92.0
Msa0388690 AT1G49660.1 29.146 199 110 7 7 179 5 198 5.24e-19 84.0
Msa0388690 AT2G03550.1 27.234 235 135 8 14 222 12 236 5.87e-19 84.0

Find 67 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATAACCTCTTATTCTTAC+AGG 0.242199 3_1:-93147907 None:intergenic
TTTATTATGGGCGACTCTTC+TGG 0.255612 3_1:+93147826 Msa0388690:CDS
CTTTGACAGTGTGTTTATTA+TGG 0.269266 3_1:+93147813 Msa0388690:CDS
CCAGTGATTGTGTTCCTTCA+TGG 0.273519 3_1:+93147568 Msa0388690:CDS
TCAAGATTCAATGTTTGTTC+TGG 0.294664 3_1:-93147985 None:intergenic
TGGAGGACCTTCCTCAGATT+TGG 0.297434 3_1:-93147965 None:intergenic
CACCAGCTCGCGGTTCGGTT+TGG 0.326565 3_1:+93147862 Msa0388690:CDS
TTCTTGTTGTTGATGTTGTT+TGG 0.341111 3_1:-93147535 None:intergenic
CATCCATTGGCGAATCCATT+TGG 0.361125 3_1:+93150583 Msa0388690:CDS
TTTGACAGTGTGTTTATTAT+GGG 0.375770 3_1:+93147814 Msa0388690:CDS
ACTGAGTTGTCTTCTATTGT+GGG 0.382901 3_1:-93147454 None:intergenic
CAGGGGTTGAGCCATGGTTA+TGG 0.420795 3_1:+93147763 Msa0388690:CDS
GAAGTTGTTAGAACGGCAAA+TGG 0.428164 3_1:-93147419 None:intergenic
TGTGAGGTGGCTTCAAAGGC+AGG 0.428633 3_1:+93147744 Msa0388690:CDS
ATTGAACCTGTAAGAATAAG+AGG 0.436336 3_1:+93147901 Msa0388690:CDS
TACTGAGTTGTCTTCTATTG+TGG 0.438893 3_1:-93147455 None:intergenic
GTCGAAAAGACAGTCTTTGA+AGG 0.443728 3_1:-93147479 None:intergenic
TTGCTCACCAGCTCGCGGTT+CGG 0.462960 3_1:+93147857 Msa0388690:CDS
TCTGGTGCAAGCCGGTAGTC+CGG 0.481494 3_1:-93147682 None:intergenic
GCTCGCGGTTCGGTTTGGAT+TGG 0.481933 3_1:+93147867 Msa0388690:CDS
AACCGTCGTTATAGAGTTGA+AGG 0.492510 3_1:-93147396 None:intergenic
GCAGCTGGAAGACGGTGCTC+TGG 0.503385 3_1:-93147700 None:intergenic
GAAATTTGAAGTTGTTAGAA+CGG 0.506659 3_1:-93147426 None:intergenic
AGATTCAATGTTTGTTCTGG+AGG 0.507064 3_1:-93147982 None:intergenic
TGATCTCTACTCTCTCCAAC+AGG 0.510331 3_1:-93150562 None:intergenic
TGGTGGTTGCACCGGACTAC+CGG 0.511979 3_1:+93147671 Msa0388690:CDS
AAGCTGTGAGGTGGCTTCAA+AGG 0.513473 3_1:+93147740 Msa0388690:CDS
TCAAGCACTGGTGGTTGCAC+CGG 0.513886 3_1:+93147663 Msa0388690:CDS
TGAGGTGGCTTCAAAGGCAG+GGG 0.515102 3_1:+93147746 Msa0388690:CDS
CCATGAAGGAACACAATCAC+TGG 0.524194 3_1:-93147568 None:intergenic
ACAGCATCATCAATTGCAGC+TGG 0.532717 3_1:-93147715 None:intergenic
AATCCTCTACTACGTGGGGA+AGG 0.539422 3_1:-93147363 None:intergenic
GACGGTGCTCTGGTGCAAGC+CGG 0.547439 3_1:-93147690 None:intergenic
CGCTGGACTTCAAGCACTGG+TGG 0.553404 3_1:+93147654 Msa0388690:CDS
TTCCCTTCCCCACGTAGTAG+AGG 0.554411 3_1:+93147360 Msa0388690:CDS
TGAATCTTGACTTACTAGAC+AGG 0.555572 3_1:+93147998 Msa0388690:CDS
CAAAGGCAGGGGTTGAGCCA+TGG 0.559944 3_1:+93147757 Msa0388690:CDS
ATCCAAACCGAACCGCGAGC+TGG 0.561333 3_1:-93147864 None:intergenic
TGTCCAAATGGATTCGCCAA+TGG 0.564040 3_1:-93150586 None:intergenic
TTCCTTCAACTCTATAACGA+CGG 0.566776 3_1:+93147394 Msa0388690:CDS
GTGAGGTGGCTTCAAAGGCA+GGG 0.568163 3_1:+93147745 Msa0388690:CDS
CATCAATTGCAGCTGGAAGA+CGG 0.570423 3_1:-93147708 None:intergenic
AACAAAAGCCTCCACCATGA+AGG 0.573822 3_1:-93147582 None:intergenic
ATTATGGGCGACTCTTCTGG+CGG 0.575291 3_1:+93147829 Msa0388690:CDS
TGATGTTGTTTGGTTTGTAG+AGG 0.582952 3_1:-93147525 None:intergenic
CCACGTAGTAGAGGATTGCA+TGG 0.583298 3_1:+93147369 Msa0388690:CDS
TTATGGGCGACTCTTCTGGC+GGG 0.583356 3_1:+93147830 Msa0388690:CDS
ATCCTCTACTACGTGGGGAA+GGG 0.583978 3_1:-93147362 None:intergenic
AGCCGCTGGACTTCAAGCAC+TGG 0.585205 3_1:+93147651 Msa0388690:intron
ACTGTCAAAGTCAACATCAC+TGG 0.588550 3_1:-93147800 None:intergenic
CATGCAATCCTCTACTACGT+GGG 0.592592 3_1:-93147368 None:intergenic
TCGGTTTGGATTGGATCGAA+CGG 0.608973 3_1:+93147876 Msa0388690:CDS
TGGAGGTTGTCAATGCCTGT+TGG 0.608993 3_1:+93150547 Msa0388690:CDS
TTGGCGAATCCATTTGGACA+TGG 0.609677 3_1:+93150589 Msa0388690:CDS
ATGCTGTCGAAGCTGTGAGG+TGG 0.615332 3_1:+93147731 Msa0388690:CDS
AGAGAGTAGAGATCATCCAT+TGG 0.627428 3_1:+93150570 Msa0388690:CDS
CACCAGTGCTTGAAGTCCAG+CGG 0.635664 3_1:-93147653 None:intergenic
GCCATGGTTATGGAGAGCCA+TGG 0.645828 3_1:+93147773 Msa0388690:CDS
ATGCAATCCTCTACTACGTG+GGG 0.648507 3_1:-93147367 None:intergenic
CCATGCAATCCTCTACTACG+TGG 0.649967 3_1:-93147369 None:intergenic
CACGTAGTAGAGGATTGCAT+GGG 0.651059 3_1:+93147370 Msa0388690:CDS
GGAAGTACGGACCAAATCTG+AGG 0.652219 3_1:+93147954 Msa0388690:CDS
GTACGGACCAAATCTGAGGA+AGG 0.656456 3_1:+93147958 Msa0388690:CDS
GAATATTGCTCACCAGCTCG+CGG 0.656723 3_1:+93147852 Msa0388690:CDS
TCAACATCACTGGTCAACCA+TGG 0.667320 3_1:-93147790 None:intergenic
ACCATGGCTCTCCATAACCA+TGG 0.673171 3_1:-93147774 None:intergenic
ATGATGCTGTCGAAGCTGTG+AGG 0.759020 3_1:+93147728 Msa0388690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTATTATAAA+GGG - chr3_1:93150000-93150019 None:intergenic 0.0%
!! TATTATTATTATTATTATAA+AGG - chr3_1:93150001-93150020 None:intergenic 0.0%
!!! AATTAGAATCAATTATTTTA+GGG - chr3_1:93148059-93148078 None:intergenic 10.0%
!!! AAATTAGAATCAATTATTTT+AGG - chr3_1:93148060-93148079 None:intergenic 10.0%
!! AAAATATTATTATCTCTAAT+CGG + chr3_1:93149328-93149347 Msa0388690:intron 10.0%
!! AATAATATATTAAAATAGCA+AGG + chr3_1:93149902-93149921 Msa0388690:intron 10.0%
!! ATAATATATTAAAATAGCAA+GGG + chr3_1:93149903-93149922 Msa0388690:intron 10.0%
!!! ATATTTTGTTCTAAAATGTT+CGG + chr3_1:93148160-93148179 Msa0388690:intron 15.0%
!!! TAAAAGAATCATTCATTTTT+AGG - chr3_1:93148288-93148307 None:intergenic 15.0%
!!! TATCTTTCATTTTGTATTTA+TGG + chr3_1:93148419-93148438 Msa0388690:intron 15.0%
!! ACAATATTACAATACAAATT+TGG + chr3_1:93148845-93148864 Msa0388690:intron 15.0%
!! CATTTAATACTTAATGTATT+TGG + chr3_1:93149011-93149030 Msa0388690:intron 15.0%
!!! GATTAGAGATAATAATATTT+TGG - chr3_1:93149329-93149348 None:intergenic 15.0%
!!! TTAATATTTTACACAAATCA+AGG + chr3_1:93149475-93149494 Msa0388690:intron 15.0%
!! AATAAAATATTAAATGACCA+AGG - chr3_1:93149556-93149575 None:intergenic 15.0%
!! TTAGCAAATATATGTAAAAT+TGG - chr3_1:93150487-93150506 None:intergenic 15.0%
!!! AGAATTTCTCATCTAATTTT+CGG + chr3_1:93148114-93148133 Msa0388690:intron 20.0%
!! ATGTAAGTATTATATATCAG+AGG - chr3_1:93148347-93148366 None:intergenic 20.0%
!!! AATTTTGCACTTTTTTTTAG+AGG + chr3_1:93148487-93148506 Msa0388690:intron 20.0%
!! TGTAAAATAGTCAAATGAAT+TGG + chr3_1:93148533-93148552 Msa0388690:intron 20.0%
!!! TTCATTATTTTCAAAGAAGT+TGG - chr3_1:93148683-93148702 None:intergenic 20.0%
!! CATTGAATACATAATGTATT+TGG - chr3_1:93149049-93149068 None:intergenic 20.0%
!!! TAAGCAAAAATGTACTTTTT+AGG - chr3_1:93149074-93149093 None:intergenic 20.0%
!!! TTGCTAACAAGTTTTTTTTA+AGG - chr3_1:93149303-93149322 None:intergenic 20.0%
!!! TGATGGTTGTTATTAAAATT+AGG + chr3_1:93149368-93149387 Msa0388690:intron 20.0%
!! TTAAAAAGTGACACTTAAAA+AGG - chr3_1:93149459-93149478 None:intergenic 20.0%
!! TCTCCACAATAAATAATTAA+GGG + chr3_1:93149589-93149608 Msa0388690:intron 20.0%
!! TTACCCTTAATTATTTATTG+TGG - chr3_1:93149595-93149614 None:intergenic 20.0%
!! TAAATAATTAAGGGTAATGT+CGG + chr3_1:93149598-93149617 Msa0388690:intron 20.0%
!!! ATTTCCAATTTTTCAGATTT+TGG + chr3_1:93150527-93150546 Msa0388690:intron 20.0%
!! GAAATTTGAAGTTGTTAGAA+CGG - chr3_1:93147429-93147448 None:intergenic 25.0%
! ATACAACAATTGTGAATATG+GGG - chr3_1:93147625-93147644 None:intergenic 25.0%
! CATACAACAATTGTGAATAT+GGG - chr3_1:93147626-93147645 None:intergenic 25.0%
! TCATACAACAATTGTGAATA+TGG - chr3_1:93147627-93147646 None:intergenic 25.0%
! TTTGACAGTGTGTTTATTAT+GGG + chr3_1:93147814-93147833 Msa0388690:CDS 25.0%
!! AATAAGAGGTTATGTTTTGT+TGG + chr3_1:93147915-93147934 Msa0388690:CDS 25.0%
! AGAGCTTGAATTTGATATAT+AGG - chr3_1:93148216-93148235 None:intergenic 25.0%
! ACTTCAACGAAGAAATAATT+TGG - chr3_1:93148239-93148258 None:intergenic 25.0%
!! CTTTGAAAATAATGAAGCAT+TGG + chr3_1:93148687-93148706 Msa0388690:intron 25.0%
! TAAAACTAAAACAAGTGAAG+TGG - chr3_1:93148784-93148803 None:intergenic 25.0%
! ACGACATTCTTTATTATACT+TGG - chr3_1:93148883-93148902 None:intergenic 25.0%
! AGTATAATAAAGAATGTCGT+TGG + chr3_1:93148883-93148902 Msa0388690:intron 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + chr3_1:93149084-93149103 Msa0388690:intron 25.0%
! AATTTCCATGACATCATATT+AGG + chr3_1:93149118-93149137 Msa0388690:intron 25.0%
! ACACAAAGTCAACTAAATAT+TGG - chr3_1:93149180-93149199 None:intergenic 25.0%
! ACAATAGTATTATGGAATGA+TGG + chr3_1:93149351-93149370 Msa0388690:intron 25.0%
! CTCTCCACAATAAATAATTA+AGG + chr3_1:93149588-93149607 Msa0388690:intron 25.0%
! TTTGAAAGTGACAGTTAAAT+AGG + chr3_1:93149649-93149668 Msa0388690:intron 25.0%
! GTAATCTTTAACAACTTTAG+TGG + chr3_1:93149718-93149737 Msa0388690:intron 25.0%
! ACTTGTGGTTCATTAAATTA+TGG + chr3_1:93149775-93149794 Msa0388690:intron 25.0%
!!! TCATCAACTTTTTCCAATAT+AGG + chr3_1:93149818-93149837 Msa0388690:intron 25.0%
!! TACTATTAGTTTGAAAGCAA+TGG - chr3_1:93149847-93149866 None:intergenic 25.0%
! ATTGCTTTCAAACTAATAGT+AGG + chr3_1:93149846-93149865 Msa0388690:intron 25.0%
! TACAAGTAATATTTACCACA+TGG - chr3_1:93149875-93149894 None:intergenic 25.0%
! AAGATTGAAAATCTTTACAC+TGG - chr3_1:93149958-93149977 None:intergenic 25.0%
! TTATAAAGGGTTCTATGATT+TGG - chr3_1:93149987-93150006 None:intergenic 25.0%
!! TTCTTGTTGTTGATGTTGTT+TGG - chr3_1:93147538-93147557 None:intergenic 30.0%
CTTTGACAGTGTGTTTATTA+TGG + chr3_1:93147813-93147832 Msa0388690:CDS 30.0%
ATTGAACCTGTAAGAATAAG+AGG + chr3_1:93147901-93147920 Msa0388690:CDS 30.0%
ACATAACCTCTTATTCTTAC+AGG - chr3_1:93147910-93147929 None:intergenic 30.0%
TCAAGATTCAATGTTTGTTC+TGG - chr3_1:93147988-93148007 None:intergenic 30.0%
AATACTTACATCGTTCATTC+TGG + chr3_1:93148356-93148375 Msa0388690:intron 30.0%
! TATTTATGGTAGCGATTAGT+TGG + chr3_1:93148433-93148452 Msa0388690:intron 30.0%
GAGCCACATTATAATATTGT+GGG - chr3_1:93148594-93148613 None:intergenic 30.0%
AGAGCCACATTATAATATTG+TGG - chr3_1:93148595-93148614 None:intergenic 30.0%
!!! GTTTTAGTTTTAGCCTTATC+TGG + chr3_1:93148792-93148811 Msa0388690:intron 30.0%
TTTCACCTAATATGATGTCA+TGG - chr3_1:93149126-93149145 None:intergenic 30.0%
CTAATCGGACAATAGTATTA+TGG + chr3_1:93149343-93149362 Msa0388690:intron 30.0%
AAGTGACACTTAAAAAGGAA+CGG - chr3_1:93149690-93149709 None:intergenic 30.0%
TACTTTCACTATAATAGCCT+TGG + chr3_1:93149536-93149555 Msa0388690:intron 30.0%
TCCAAAAGTGACACTTAAAA+AGG + chr3_1:93149685-93149704 Msa0388690:intron 30.0%
!!! TCCTTTTTAAGTGTCACTTT+TGG - chr3_1:93149455-93149474 None:intergenic 30.0%
AAGTGACACTTAAAAAGGAA+CGG + chr3_1:93149690-93149709 Msa0388690:intron 30.0%
AAAGCAATGGAAACCTATAT+TGG - chr3_1:93149834-93149853 None:intergenic 30.0%
!!! GTACGTGTAGCATTTTTTTT+AGG - chr3_1:93149933-93149952 None:intergenic 30.0%
!! TCCAATTTTTCAGATTTTGG+AGG + chr3_1:93150530-93150549 Msa0388690:intron 30.0%
ACCTCCAAAATCTGAAAAAT+TGG - chr3_1:93150534-93150553 None:intergenic 30.0%
TTCCTTCAACTCTATAACGA+CGG + chr3_1:93147394-93147413 Msa0388690:CDS 35.0%
ACTGAGTTGTCTTCTATTGT+GGG - chr3_1:93147457-93147476 None:intergenic 35.0%
TACTGAGTTGTCTTCTATTG+TGG - chr3_1:93147458-93147477 None:intergenic 35.0%
!! TGATGTTGTTTGGTTTGTAG+AGG - chr3_1:93147528-93147547 None:intergenic 35.0%
AGATTCAATGTTTGTTCTGG+AGG - chr3_1:93147985-93148004 None:intergenic 35.0%
TGAATCTTGACTTACTAGAC+AGG + chr3_1:93147998-93148017 Msa0388690:CDS 35.0%
CGGTAGAATCATGAATTGAA+TGG + chr3_1:93148134-93148153 Msa0388690:intron 35.0%
CCACATTATAATATTGTGGG+TGG - chr3_1:93148591-93148610 None:intergenic 35.0%
CCACCCACAATATTATAATG+TGG + chr3_1:93148588-93148607 Msa0388690:intron 35.0%
!!! TGTGGCTCTTTTTTTACAGT+AGG + chr3_1:93148606-93148625 Msa0388690:intron 35.0%
CATTGGTATCCAAAGTTATC+TGG + chr3_1:93148704-93148723 Msa0388690:intron 35.0%
CATTTAATTACCTACGTCCA+TGG - chr3_1:93148744-93148763 None:intergenic 35.0%
CATGGACGTAGGTAATTAAA+TGG + chr3_1:93148742-93148761 Msa0388690:intron 35.0%
TGAAGTGGTTGTGTTTATTG+GGG - chr3_1:93148769-93148788 None:intergenic 35.0%
GTGAAGTGGTTGTGTTTATT+GGG - chr3_1:93148770-93148789 None:intergenic 35.0%
AGTGAAGTGGTTGTGTTTAT+TGG - chr3_1:93148771-93148790 None:intergenic 35.0%
ACTAATAGTAGGTTTCCATG+TGG + chr3_1:93149857-93149876 Msa0388690:intron 35.0%
AACCGTCGTTATAGAGTTGA+AGG - chr3_1:93147399-93147418 None:intergenic 40.0%
GAAGTTGTTAGAACGGCAAA+TGG - chr3_1:93147422-93147441 None:intergenic 40.0%
GTCGAAAAGACAGTCTTTGA+AGG - chr3_1:93147482-93147501 None:intergenic 40.0%
ACTGTCAAAGTCAACATCAC+TGG - chr3_1:93147803-93147822 None:intergenic 40.0%
TTTATTATGGGCGACTCTTC+TGG + chr3_1:93147826-93147845 Msa0388690:CDS 40.0%
TTGTGGGTGGAAATTGTGAA+CGG - chr3_1:93148578-93148597 None:intergenic 40.0%
ATCCAAAGTTATCTGGCCAA+AGG + chr3_1:93148711-93148730 Msa0388690:intron 40.0%
CGCTTATAAATGTGACCAGA+GGG - chr3_1:93148971-93148990 None:intergenic 40.0%
TCGCTTATAAATGTGACCAG+AGG - chr3_1:93148972-93148991 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr3_1:93149087-93149106 Msa0388690:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG + chr3_1:93149088-93149107 Msa0388690:intron 40.0%
TGGAAATTGAATACTCCCTC+CGG - chr3_1:93149106-93149125 None:intergenic 40.0%
GACACTTAAAAAGGAACGGA+TGG + chr3_1:93149694-93149713 Msa0388690:intron 40.0%
! TAACAACTTTAGTGGTGCCA+TGG + chr3_1:93149726-93149745 Msa0388690:intron 40.0%
AGAGAGTAGAGATCATCCAT+TGG + chr3_1:93150570-93150589 Msa0388690:CDS 40.0%
ATGCAATCCTCTACTACGTG+GGG - chr3_1:93147370-93147389 None:intergenic 45.0%
CATGCAATCCTCTACTACGT+GGG - chr3_1:93147371-93147390 None:intergenic 45.0%
CACGTAGTAGAGGATTGCAT+GGG + chr3_1:93147370-93147389 Msa0388690:CDS 45.0%
CCATGAAGGAACACAATCAC+TGG - chr3_1:93147571-93147590 None:intergenic 45.0%
CCAGTGATTGTGTTCCTTCA+TGG + chr3_1:93147568-93147587 Msa0388690:CDS 45.0%
GTGATTGTGTTCCTTCATGG+TGG + chr3_1:93147571-93147590 Msa0388690:intron 45.0%
ATTGTGTTCCTTCATGGTGG+AGG + chr3_1:93147574-93147593 Msa0388690:intron 45.0%
AACAAAAGCCTCCACCATGA+AGG - chr3_1:93147585-93147604 None:intergenic 45.0%
!! CATGGTGGAGGCTTTTGTTT+CGG + chr3_1:93147586-93147605 Msa0388690:intron 45.0%
TGTGAATATGGGGCCATGTA+CGG - chr3_1:93147615-93147634 None:intergenic 45.0%
CATCAATTGCAGCTGGAAGA+CGG - chr3_1:93147711-93147730 None:intergenic 45.0%
ACAGCATCATCAATTGCAGC+TGG - chr3_1:93147718-93147737 None:intergenic 45.0%
TCAACATCACTGGTCAACCA+TGG - chr3_1:93147793-93147812 None:intergenic 45.0%
!! TCGGTTTGGATTGGATCGAA+CGG + chr3_1:93147876-93147895 Msa0388690:CDS 45.0%
!!! GTTTTGTTGGCGCCGTTTTT+TGG + chr3_1:93147928-93147947 Msa0388690:CDS 45.0%
CTTGACTTACTAGACAGGTG+AGG + chr3_1:93148003-93148022 Msa0388690:intron 45.0%
TTACCTACGTCCATGGCTAT+TGG - chr3_1:93148737-93148756 None:intergenic 45.0%
GGAACGGACGTAGTAAAAGA+GGG - chr3_1:93149438-93149457 None:intergenic 45.0%
AGGAACGGACGTAGTAAAAG+AGG - chr3_1:93149439-93149458 None:intergenic 45.0%
GCGACATCATGAGAAACTTG+TGG + chr3_1:93149760-93149779 Msa0388690:intron 45.0%
TGATCTCTACTCTCTCCAAC+AGG - chr3_1:93150565-93150584 None:intergenic 45.0%
CATCCATTGGCGAATCCATT+TGG + chr3_1:93150583-93150602 Msa0388690:CDS 45.0%
! TGTCCAAATGGATTCGCCAA+TGG - chr3_1:93150589-93150608 None:intergenic 45.0%
TTGGCGAATCCATTTGGACA+TGG + chr3_1:93150589-93150608 Msa0388690:CDS 45.0%
ATCCTCTACTACGTGGGGAA+GGG - chr3_1:93147365-93147384 None:intergenic 50.0%
AATCCTCTACTACGTGGGGA+AGG - chr3_1:93147366-93147385 None:intergenic 50.0%
CCATGCAATCCTCTACTACG+TGG - chr3_1:93147372-93147391 None:intergenic 50.0%
CCACGTAGTAGAGGATTGCA+TGG + chr3_1:93147369-93147388 Msa0388690:CDS 50.0%
TTTGTTTCGGCTCCCGTACA+TGG + chr3_1:93147599-93147618 Msa0388690:intron 50.0%
GTGAATATGGGGCCATGTAC+GGG - chr3_1:93147614-93147633 None:intergenic 50.0%
TGTTGTATGAGTCTAGCCGC+TGG + chr3_1:93147637-93147656 Msa0388690:intron 50.0%
ATGATGCTGTCGAAGCTGTG+AGG + chr3_1:93147728-93147747 Msa0388690:CDS 50.0%
AAGCTGTGAGGTGGCTTCAA+AGG + chr3_1:93147740-93147759 Msa0388690:CDS 50.0%
ACCATGGCTCTCCATAACCA+TGG - chr3_1:93147777-93147796 None:intergenic 50.0%
ATTATGGGCGACTCTTCTGG+CGG + chr3_1:93147829-93147848 Msa0388690:CDS 50.0%
GAATATTGCTCACCAGCTCG+CGG + chr3_1:93147852-93147871 Msa0388690:CDS 50.0%
!!! TTGTTGGCGCCGTTTTTTGG+CGG + chr3_1:93147931-93147950 Msa0388690:CDS 50.0%
CGTACTTCCCCGCCAAAAAA+CGG - chr3_1:93147943-93147962 None:intergenic 50.0%
!!! CGTTTTTTGGCGGGGAAGTA+CGG + chr3_1:93147941-93147960 Msa0388690:CDS 50.0%
! GGAAGTACGGACCAAATCTG+AGG + chr3_1:93147954-93147973 Msa0388690:CDS 50.0%
GTACGGACCAAATCTGAGGA+AGG + chr3_1:93147958-93147977 Msa0388690:CDS 50.0%
TGGAGGACCTTCCTCAGATT+TGG - chr3_1:93147968-93147987 None:intergenic 50.0%
GGCCTTTGGCCAGATAACTT+TGG - chr3_1:93148716-93148735 None:intergenic 50.0%
GCACGTCACTCTTCCAGATA+AGG - chr3_1:93148808-93148827 None:intergenic 50.0%
GAGCAGACAAATACTCCCTC+TGG + chr3_1:93148953-93148972 Msa0388690:intron 50.0%
GTTTCTCATGATGTCGCGTG+TGG - chr3_1:93149757-93149776 None:intergenic 50.0%
TGGAGGTTGTCAATGCCTGT+TGG + chr3_1:93150547-93150566 Msa0388690:CDS 50.0%
TTCCCTTCCCCACGTAGTAG+AGG + chr3_1:93147360-93147379 Msa0388690:CDS 55.0%
CACCAGTGCTTGAAGTCCAG+CGG - chr3_1:93147656-93147675 None:intergenic 55.0%
!! TCAAGCACTGGTGGTTGCAC+CGG + chr3_1:93147663-93147682 Msa0388690:CDS 55.0%
ATGCTGTCGAAGCTGTGAGG+TGG + chr3_1:93147731-93147750 Msa0388690:CDS 55.0%
TGTGAGGTGGCTTCAAAGGC+AGG + chr3_1:93147744-93147763 Msa0388690:CDS 55.0%
GTGAGGTGGCTTCAAAGGCA+GGG + chr3_1:93147745-93147764 Msa0388690:CDS 55.0%
TGAGGTGGCTTCAAAGGCAG+GGG + chr3_1:93147746-93147765 Msa0388690:CDS 55.0%
CAGGGGTTGAGCCATGGTTA+TGG + chr3_1:93147763-93147782 Msa0388690:CDS 55.0%
GCCATGGTTATGGAGAGCCA+TGG + chr3_1:93147773-93147792 Msa0388690:CDS 55.0%
TTATGGGCGACTCTTCTGGC+GGG + chr3_1:93147830-93147849 Msa0388690:CDS 55.0%
!!! TGTTGGCGCCGTTTTTTGGC+GGG + chr3_1:93147932-93147951 Msa0388690:CDS 55.0%
TGGCCAAAGGCCAATAGCCA+TGG + chr3_1:93148724-93148743 Msa0388690:intron 55.0%
!! CGTCCATGGCTATTGGCCTT+TGG - chr3_1:93148730-93148749 None:intergenic 55.0%
AGGCCAATAGCCATGGACGT+AGG + chr3_1:93148731-93148750 Msa0388690:intron 55.0%
TCTCATGATGTCGCGTGTGG+TGG - chr3_1:93149754-93149773 None:intergenic 55.0%
AGCCGCTGGACTTCAAGCAC+TGG + chr3_1:93147651-93147670 Msa0388690:intron 60.0%
!! CGCTGGACTTCAAGCACTGG+TGG + chr3_1:93147654-93147673 Msa0388690:CDS 60.0%
TGGTGGTTGCACCGGACTAC+CGG + chr3_1:93147671-93147690 Msa0388690:CDS 60.0%
TCTGGTGCAAGCCGGTAGTC+CGG - chr3_1:93147685-93147704 None:intergenic 60.0%
CAAAGGCAGGGGTTGAGCCA+TGG + chr3_1:93147757-93147776 Msa0388690:CDS 60.0%
TTGCTCACCAGCTCGCGGTT+CGG + chr3_1:93147857-93147876 Msa0388690:CDS 60.0%
ATCCAAACCGAACCGCGAGC+TGG - chr3_1:93147867-93147886 None:intergenic 60.0%
!! GCTCGCGGTTCGGTTTGGAT+TGG + chr3_1:93147867-93147886 Msa0388690:CDS 60.0%
!!! GTTGGCGCCGTTTTTTGGCG+GGG + chr3_1:93147933-93147952 Msa0388690:CDS 60.0%
GACGGTGCTCTGGTGCAAGC+CGG - chr3_1:93147693-93147712 None:intergenic 65.0%
GCAGCTGGAAGACGGTGCTC+TGG - chr3_1:93147703-93147722 None:intergenic 65.0%
!! CACCAGCTCGCGGTTCGGTT+TGG + chr3_1:93147862-93147881 Msa0388690:CDS 65.0%
! TGTCGCGTGTGGTGGTGCCA+TGG - chr3_1:93149746-93149765 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 93147355 93150612 93147355 ID=Msa0388690;Name=Msa0388690
chr3_1 mRNA 93147355 93150612 93147355 ID=Msa0388690-mRNA-1;Parent=Msa0388690;Name=Msa0388690-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.5|0|1|0|0|3|0|224
chr3_1 exon 93147355 93147589 93147355 ID=Msa0388690-mRNA-1:exon:26241;Parent=Msa0388690-mRNA-1
chr3_1 exon 93147653 93148019 93147653 ID=Msa0388690-mRNA-1:exon:26242;Parent=Msa0388690-mRNA-1
chr3_1 exon 93150543 93150612 93150543 ID=Msa0388690-mRNA-1:exon:26243;Parent=Msa0388690-mRNA-1
chr3_1 CDS 93147355 93147589 93147355 ID=Msa0388690-mRNA-1:cds;Parent=Msa0388690-mRNA-1
chr3_1 CDS 93147653 93148019 93147653 ID=Msa0388690-mRNA-1:cds;Parent=Msa0388690-mRNA-1
chr3_1 CDS 93150543 93150612 93150543 ID=Msa0388690-mRNA-1:cds;Parent=Msa0388690-mRNA-1
Gene Sequence

>Msa0388690

ATGGGTTCCCTTCCCCACGTAGTAGAGGATTGCATGGGCTTCCTTCAACTCTATAACGACGGTTCCATTTGCCGTTCTAACAACTTCAAATTTCAAATTCCCACAATAGAAGACAACTCAGTAACCTTCAAAGACTGTCTTTTCGACAAAAAATTCAATCTCTCTCTTCGCCTCTACAAACCAAACAACATCAACAACAAGAAAAACAAACTTCCAGTGATTGTGTTCCTTCATGCCGCTGGACTTCAAGCACTGGTGGTTGCACCGGACTACCGGCTTGCACCAGAGCACCGTCTTCCAGCTGCAATTGATGATGCTGTCGAAGCTGTGAGGTGGCTTCAAAGGCAGGGGTTGAGCCATGGTTATGGAGAGCCATGGTTGACCAGTGATGTTGACTTTGACAGTGTGTTTATTATGGGCGACTCTTCTGGCGGGAATATTGCTCACCAGCTCGCGGTTCGGTTTGGATTGGATCGAACGGCTATTGAACCTGTAAGAATAAGAGGTTATGTTTTGTTGGCGCCGTTTTTTGGCGGGGAAGTACGGACCAAATCTGAGGAAGGTCCTCCAGAACAAACATTGAATCTTGACTTACTAGACAGATTTTGGAGGTTGTCAATGCCTGTTGGAGAGAGTAGAGATCATCCATTGGCGAATCCATTTGGACATGGA

Protein sequence

>Msa0388690

MGSLPHVVEDCMGFLQLYNDGSICRSNNFKFQIPTIEDNSVTFKDCLFDKKFNLSLRLYKPNNINNKKNKLPVIVFLHAAGLQALVVAPDYRLAPEHRLPAAIDDAVEAVRWLQRQGLSHGYGEPWLTSDVDFDSVFIMGDSSGGNIAHQLAVRFGLDRTAIEPVRIRGYVLLAPFFGGEVRTKSEEGPPEQTLNLDLLDRFWRLSMPVGESRDHPLANPFGHG