AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0130710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130710 MtrunA17_Chr1g0199091 97.579 537 9 1 1 537 1 533 0.0 1087
Msa0130710 MtrunA17_Chr6g0486111 45.223 157 57 4 403 533 167 320 1.34e-31 124
Msa0130710 MtrunA17_Chr2g0280631 48.649 148 66 5 394 536 272 414 8.30e-31 124
Msa0130710 MtrunA17_Chr8g0361501 45.625 160 80 4 377 535 290 443 9.56e-30 121
Msa0130710 MtrunA17_Chr2g0318971 50.769 130 61 2 404 533 308 434 1.35e-29 121
Msa0130710 MtrunA17_Chr8g0390301 42.857 161 55 4 403 533 180 333 1.94e-28 115
Msa0130710 MtrunA17_Chr2g0331431 44.375 160 55 5 403 531 169 325 2.07e-28 115
Msa0130710 MtrunA17_Chr1g0207771 39.130 184 89 6 361 533 102 273 1.67e-27 112
Msa0130710 MtrunA17_Chr3g0141841 47.101 138 68 3 384 517 299 435 5.89e-27 113
Msa0130710 MtrunA17_Chr4g0045561 50.000 102 41 3 428 529 59 150 1.21e-21 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130710 AT1G31050.6 51.208 207 90 5 335 537 239 438 5.62e-52 183
Msa0130710 AT1G31050.1 51.208 207 86 6 335 537 239 434 1.85e-50 179
Msa0130710 AT1G31050.7 51.232 203 84 6 335 533 239 430 2.31e-48 173
Msa0130710 AT1G31050.8 43.961 207 79 7 335 537 239 412 3.41e-35 137
Msa0130710 AT3G19500.1 49.612 129 57 5 409 533 135 259 5.81e-27 110
Msa0130710 AT1G27660.1 49.565 115 53 2 402 513 311 423 7.05e-27 114
Msa0130710 AT1G61660.7 42.775 173 84 5 377 537 224 393 3.51e-26 110
Msa0130710 AT1G61660.1 42.775 173 84 5 377 537 224 393 3.51e-26 110
Msa0130710 AT3G20640.1 37.363 182 89 5 355 535 296 453 3.97e-26 111
Msa0130710 AT3G20640.4 37.912 182 88 5 355 535 234 391 4.27e-26 110
Msa0130710 AT4G29100.1 43.312 157 52 7 409 531 248 401 1.34e-25 109
Msa0130710 AT2G20100.1 42.308 156 54 5 409 531 205 357 2.08e-25 108
Msa0130710 AT1G61660.3 41.765 170 87 4 377 537 224 390 7.88e-25 107
Msa0130710 AT2G31730.2 50.485 103 41 3 428 530 42 134 1.54e-24 100
Msa0130710 AT2G31730.1 50.485 103 41 3 428 530 42 134 1.54e-24 100
Msa0130710 AT1G05710.6 43.651 126 56 3 405 530 14 124 5.32e-24 98.2
Msa0130710 AT1G05710.11 43.651 126 56 3 405 530 22 132 5.60e-24 98.6
Msa0130710 AT1G05710.5 43.651 126 56 3 405 530 22 132 5.60e-24 98.6
Msa0130710 AT1G05710.1 43.651 126 56 3 405 530 22 132 5.60e-24 98.6
Msa0130710 AT1G05710.14 43.651 126 56 3 405 530 22 132 5.60e-24 98.6
Msa0130710 AT1G05710.3 43.651 126 56 3 405 530 22 132 5.60e-24 98.6
Msa0130710 AT1G05710.4 43.651 126 56 3 405 530 22 132 5.60e-24 98.6
Msa0130710 AT1G05710.12 43.651 126 56 3 405 530 22 132 5.60e-24 98.6
Msa0130710 AT1G31050.5 47.445 137 65 3 335 470 239 369 8.44e-24 103
Msa0130710 AT1G31050.2 47.445 137 61 4 335 470 239 365 2.03e-22 99.4
Msa0130710 AT4G05170.3 46.970 132 50 4 398 511 23 152 1.01e-21 93.2
Msa0130710 AT4G05170.2 36.797 231 113 9 309 511 45 270 1.34e-21 95.9
Msa0130710 AT4G05170.1 36.957 230 112 9 309 510 63 287 1.34e-21 96.3
Msa0130710 AT4G05170.5 45.588 136 54 4 393 510 111 244 3.79e-21 94.0
Msa0130710 AT4G05170.7 40.437 183 87 7 309 474 45 222 1.02e-20 91.7
Msa0130710 AT1G05710.9 37.838 148 55 4 405 530 14 146 7.30e-20 87.4
Msa0130710 AT1G05710.8 37.838 148 55 4 405 530 14 146 7.30e-20 87.4
Msa0130710 AT1G05710.13 37.838 148 55 4 405 530 22 154 8.16e-20 87.4
Msa0130710 AT1G05710.2 37.838 148 55 4 405 530 22 154 8.16e-20 87.4
Msa0130710 AT1G05710.10 37.838 148 55 4 405 530 22 154 8.16e-20 87.4
Msa0130710 AT1G05710.7 37.838 148 55 4 405 530 22 154 8.16e-20 87.4
Msa0130710 AT4G21340.1 43.609 133 57 5 397 514 157 286 1.82e-19 89.7
Msa0130710 AT1G49830.2 48.454 97 46 2 435 531 133 225 9.47e-19 86.3
Msa0130710 AT1G49830.1 48.454 97 46 2 435 531 134 226 1.05e-18 86.3
Msa0130710 AT4G05170.6 39.011 182 89 7 309 473 45 221 1.54e-18 85.1
Msa0130710 AT4G05170.4 39.011 182 89 7 309 473 45 221 1.54e-18 85.1
Msa0130710 AT1G61660.6 47.748 111 46 3 377 477 224 332 1.15e-17 85.1
Msa0130710 AT1G61660.2 47.748 111 46 3 377 477 224 332 1.15e-17 85.1
Msa0130710 AT3G19500.2 52.113 71 31 1 409 476 135 205 9.08e-17 80.1
Msa0130710 AT3G20640.3 38.889 126 55 3 355 480 296 399 1.05e-16 82.8
Msa0130710 AT4G29100.2 57.971 69 26 2 409 476 248 314 3.74e-16 80.5
Msa0130710 AT2G20100.4 57.353 68 27 1 409 476 205 270 7.69e-16 79.0
Msa0130710 AT2G20100.2 57.353 68 27 1 409 476 205 270 7.69e-16 79.0
Msa0130710 AT1G61660.4 36.527 167 81 6 377 537 224 371 9.15e-16 79.7
Msa0130710 AT2G20100.3 57.353 68 27 1 409 476 205 270 2.47e-15 78.6
Msa0130710 AT1G31050.3 43.478 115 58 3 335 448 239 347 3.14e-14 74.7
Msa0130710 AT1G31050.4 43.478 115 54 4 335 448 239 343 8.10e-13 70.5
Msa0130710 AT3G20640.2 37.069 116 51 3 355 470 296 389 1.70e-12 69.7

Find 129 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTCTCTTTCTTCAAAT+TGG 0.120203 1_3:-61118478 Msa0130710:CDS
TCACAAGAAGAGGAAGAATT+TGG 0.217219 1_3:+61118416 None:intergenic
TGAAGATACCACCAGTTTAA+TGG 0.227878 1_3:+61118503 None:intergenic
CCTTCCAAGCCTACTATTAA+AGG 0.229635 1_3:+61116900 None:intergenic
GGTAGTTTGAAATGACAATT+AGG 0.230715 1_3:+61117201 None:intergenic
TTGTTAGTGATTCCTTTAAT+TGG 0.238465 1_3:+61118610 None:intergenic
AGAAATTCTCTCCAATTTCT+TGG 0.238593 1_3:+61117568 None:intergenic
TTGTCTCCTAGCTTGACTTT+AGG 0.249029 1_3:+61116087 None:intergenic
TTGCACAATAACCAAGAAAT+TGG 0.269212 1_3:-61117579 Msa0130710:CDS
TGTTCTCTCTATAAACTATA+GGG 0.281744 1_3:+61114604 None:intergenic
TCCCTCTCCTCTTCCATTAG+TGG 0.281990 1_3:+61116355 None:intergenic
TGTCATTTCAAACTACCTTT+TGG 0.288080 1_3:-61117195 Msa0130710:CDS
AAGTTTGAGTATCTCATATT+AGG 0.290538 1_3:+61116850 None:intergenic
TTGTTCTCTCTATAAACTAT+AGG 0.291074 1_3:+61114603 None:intergenic
AGATCCATTCCACCAATTAA+AGG 0.292296 1_3:-61118622 Msa0130710:five_prime_UTR
AAGAATTTGGATTATTCATT+TGG 0.300698 1_3:+61118429 None:intergenic
CAACAAATTGTGTCTCCATT+TGG 0.320532 1_3:-61116051 Msa0130710:CDS
TAATTCTAATTCCTCCAATA+TGG 0.332844 1_3:-61117253 Msa0130710:CDS
AGAAATTGGAGAGAATTTCT+TGG 0.337223 1_3:-61117565 Msa0130710:CDS
ATGTTATATCCTTTAATAGT+AGG 0.340183 1_3:-61116909 Msa0130710:CDS
AATCCAAATGGATTTCTTGA+TGG 0.341712 1_3:-61117024 Msa0130710:CDS
ACTATAATTTGCTAGAATCT+TGG 0.352861 1_3:-61114474 Msa0130710:three_prime_UTR
ACCTTCCTCCAACGACTTCA+TGG 0.368605 1_3:-61118288 Msa0130710:CDS
AGAACAATGGACCAGATTAC+TGG 0.373771 1_3:-61114587 Msa0130710:CDS
TGTGAATTTGCCTTCAAGTA+AGG 0.376170 1_3:+61114855 None:intergenic
TCAAAGTGGCTACTAACTTC+AGG 0.382319 1_3:+61117312 None:intergenic
TTGGTGCATGGTGAAATATT+TGG 0.392516 1_3:+61116943 None:intergenic
TTAATTGGTGGAATGGATCT+AGG 0.393658 1_3:+61118625 None:intergenic
AACCCATCAAGAAATCCATT+TGG 0.394816 1_3:+61117021 None:intergenic
TATAGAGGTGTTGGATCAAA+TGG 0.395514 1_3:-61117606 Msa0130710:intron
GTTGTTGAAGTATCTTGCTT+AGG 0.402645 1_3:+61116272 None:intergenic
ATGCTTCGGATAACCAACTA+TGG 0.408893 1_3:-61118259 Msa0130710:CDS
AAAATAATTTATAGAGGTGT+TGG 0.410268 1_3:-61117615 Msa0130710:intron
AGAAAATCACTTAATCCAAA+TGG 0.413099 1_3:-61117036 Msa0130710:CDS
TGATATTCAAGACATGAATA+AGG 0.417390 1_3:-61117112 Msa0130710:CDS
AGACCAAGTGCTTACAAGAT+TGG 0.417683 1_3:+61117350 None:intergenic
GTAGTTTGAAATGACAATTA+GGG 0.422857 1_3:+61117202 None:intergenic
TACGCTGGTGTCCAGTAATC+TGG 0.425230 1_3:+61114576 None:intergenic
CGTATAGAGGATGTATGTAT+AGG 0.435878 1_3:-61114557 Msa0130710:CDS
CCTCTACTACTCCATTAAAC+TGG 0.438226 1_3:-61118514 Msa0130710:CDS
CTTCATGGCCGAACATGCTT+CGG 0.438443 1_3:-61118273 Msa0130710:CDS
TTGGTTATCCGAAGCATGTT+CGG 0.438578 1_3:+61118265 None:intergenic
ATTCAACAGTGAGGCTTGAA+TGG 0.438689 1_3:+61118345 None:intergenic
ACTGAGCAACCCTTACTTGA+AGG 0.440093 1_3:-61114865 Msa0130710:CDS
ATCCAAATGGATTTCTTGAT+GGG 0.447532 1_3:-61117023 Msa0130710:CDS
TTAGTGATTCCTTTAATTGG+TGG 0.459239 1_3:+61118613 None:intergenic
TGTGATCTCCCACTGAGTTA+AGG 0.459782 1_3:+61116989 None:intergenic
GATTCCTTTAATTGGTGGAA+TGG 0.462105 1_3:+61118618 None:intergenic
CTATCGAAGTAGCTTCCCCT+TGG 0.464932 1_3:+61114696 None:intergenic
TATTCATGTCTTGAATATCA+TGG 0.469820 1_3:+61117115 None:intergenic
ATGCAGATGAGAACCACTAA+TGG 0.471394 1_3:-61116368 Msa0130710:intron
TGTGGATGGATTCCAACAAC+TGG 0.475017 1_3:+61116877 None:intergenic
ATATCCTTTAATAGTAGGCT+TGG 0.476406 1_3:-61116904 Msa0130710:CDS
TACTAACTTCAGGGTCAGGT+GGG 0.477199 1_3:+61117322 None:intergenic
AGGCTTGGAAGGCCAGTTGT+TGG 0.479456 1_3:-61116889 Msa0130710:CDS
AACAGTGAGGCTTGAATGGT+TGG 0.481356 1_3:+61118349 None:intergenic
GAAACTTGATACAACAAGTT+GGG 0.483370 1_3:-61117478 Msa0130710:CDS
TCTTGAATATCATGGCAACT+AGG 0.484654 1_3:+61117123 None:intergenic
ATGGAGACACAATTTGTTGA+AGG 0.484969 1_3:+61116055 None:intergenic
TCTGTGCTGTTTGAAGCAAT+AGG 0.485312 1_3:-61115868 Msa0130710:CDS
AACAACAAATTCATCTTCAA+AGG 0.487475 1_3:-61116255 Msa0130710:intron
AAGCTAGACCTTCGAAGTAA+AGG 0.488325 1_3:-61114654 Msa0130710:CDS
CTACTAACTTCAGGGTCAGG+TGG 0.488776 1_3:+61117321 None:intergenic
AATAATTAATCCAGGATCCA+AGG 0.491479 1_3:-61114713 Msa0130710:intron
CTGTGCTGTTTGAAGCAATA+GGG 0.493656 1_3:-61115867 Msa0130710:CDS
TCATATTAGGCCTCTGTGGA+TGG 0.503300 1_3:+61116863 None:intergenic
CAAAGTGGCTACTAACTTCA+GGG 0.505301 1_3:+61117313 None:intergenic
TTCTTCAAATAGTCACAAGC+TGG 0.508018 1_3:+61117498 None:intergenic
TGGCTACTAACTTCAGGGTC+AGG 0.508130 1_3:+61117318 None:intergenic
TCTGTAGTAACCTTTCCAAA+TGG 0.515894 1_3:+61116036 None:intergenic
ATAAAACATGACTCCATAGT+TGG 0.516595 1_3:+61118246 None:intergenic
CCTTTAATAGTAGGCTTGGA+AGG 0.519150 1_3:-61116900 Msa0130710:CDS
ATTGGAGAGAATTTCTTGGA+TGG 0.521784 1_3:-61117561 Msa0130710:CDS
AGAAACTTGATACAACAAGT+TGG 0.527132 1_3:-61117479 Msa0130710:CDS
TACTGGACACCAGCGTATAG+AGG 0.530645 1_3:-61114570 Msa0130710:CDS
AACAAAGACCTTTACTTCGA+AGG 0.532863 1_3:+61114646 None:intergenic
AATTGTGTCTCCATTTGGAA+AGG 0.534925 1_3:-61116046 Msa0130710:intron
ATCAAACATAGTGTTTGTCA+TGG 0.536223 1_3:+61117524 None:intergenic
AAATTCTTCCTCTTCTTGTG+AGG 0.543566 1_3:-61118414 Msa0130710:CDS
GTGAATTTGCCTTCAAGTAA+GGG 0.548202 1_3:+61114856 None:intergenic
ATCTTGATCCTCACAAGAAG+AGG 0.549474 1_3:+61118406 None:intergenic
GTATTGATGATGATCCATAT+TGG 0.550681 1_3:+61117239 None:intergenic
TATCCAATCTTGTAAGCACT+TGG 0.551774 1_3:-61117353 Msa0130710:CDS
GGAACGATGTTAAACATGCA+TGG 0.552356 1_3:-61118457 Msa0130710:CDS
ATGAGAACCACTAATGGAAG+AGG 0.557286 1_3:-61116362 Msa0130710:CDS
CCAGTTTAATGGAGTAGTAG+AGG 0.559707 1_3:+61118514 None:intergenic
AATAATAGCCTTAACTCAGT+GGG 0.563019 1_3:-61116997 Msa0130710:CDS
CTTGAATATCATGGCAACTA+GGG 0.564915 1_3:+61117124 None:intergenic
TGGAGACACAATTTGTTGAA+GGG 0.569835 1_3:+61116056 None:intergenic
CAAGCACCTAAAGTCAAGCT+AGG 0.570211 1_3:-61116093 Msa0130710:CDS
CATGATGTGGAATCTCCAAA+AGG 0.578793 1_3:+61117180 None:intergenic
TTCGGCCATGAAGTCGTTGG+AGG 0.581056 1_3:+61118283 None:intergenic
GTTCTCTCTATAAACTATAG+GGG 0.582129 1_3:+61114605 None:intergenic
ATAATTAATCCAGGATCCAA+GGG 0.583504 1_3:-61114712 Msa0130710:intron
ACCACTAATGGAAGAGGAGA+GGG 0.589390 1_3:-61116356 Msa0130710:CDS
AGTTGGGAATATAATACTAG+TGG 0.594177 1_3:-61117462 Msa0130710:CDS
GCCATGAAGTCGTTGGAGGA+AGG 0.597276 1_3:+61118287 None:intergenic
CTTGAAGGCAAATTCACACA+AGG 0.597962 1_3:-61114850 Msa0130710:intron
TTATCTGAGTCAAAGAAACA+AGG 0.598600 1_3:-61116829 Msa0130710:CDS
TTCTCTAATAGTGCATGATG+TGG 0.607686 1_3:+61117167 None:intergenic
AGATCTGAAGAATCATCAGA+AGG 0.609422 1_3:-61116308 Msa0130710:CDS
ACATCATGCACTATTAGAGA+AGG 0.611496 1_3:-61117165 Msa0130710:CDS
ACTAACTTCAGGGTCAGGTG+GGG 0.612027 1_3:+61117323 None:intergenic
GTATCTTGAAGAGCAAGTCC+AGG 0.612197 1_3:-61115836 Msa0130710:intron
TATCTCATATTAGGCCTCTG+TGG 0.618247 1_3:+61116859 None:intergenic
CTACTTCGATAGAAAAGACA+AGG 0.620057 1_3:-61114685 Msa0130710:CDS
ATGAAGTCGTTGGAGGAAGG+TGG 0.620238 1_3:+61118290 None:intergenic
AACCACTAATGGAAGAGGAG+AGG 0.625336 1_3:-61116357 Msa0130710:CDS
TACATACATCCTCTATACGC+TGG 0.625600 1_3:+61114561 None:intergenic
CTACTACTCCATTAAACTGG+TGG 0.628507 1_3:-61118511 Msa0130710:CDS
CTCTTATTGAGAATAATGAA+AGG 0.630132 1_3:-61117386 Msa0130710:CDS
TTGGAGGAAGGTGGTGCATG+TGG 0.630787 1_3:+61118299 None:intergenic
TGTTTGTTTGTGAATCAAAG+TGG 0.631378 1_3:+61117298 None:intergenic
TAATAATAGCCTTAACTCAG+TGG 0.633565 1_3:-61116998 Msa0130710:CDS
ATGTTCGGCCATGAAGTCGT+TGG 0.634214 1_3:+61118280 None:intergenic
CTCGACGAACACTCTTCGAG+AGG 0.643752 1_3:+61118322 None:intergenic
TATCTGAGTCAAAGAAACAA+GGG 0.644946 1_3:-61116828 Msa0130710:CDS
ACTATAGGGGTACATGACGT+AGG 0.654815 1_3:+61114618 None:intergenic
CATGCAAGTGAAGTGATGCA+AGG 0.656888 1_3:-61117069 Msa0130710:CDS
TTGATGATGATCCATATTGG+AGG 0.673081 1_3:+61117242 None:intergenic
TGCACTATTAGAGAAGGAGT+AGG 0.675198 1_3:-61117159 Msa0130710:CDS
ATAGTTTATAGAGAGAACAA+TGG 0.682655 1_3:-61114600 Msa0130710:CDS
AACTCAGTGGGAGATCACAA+TGG 0.686157 1_3:-61116985 Msa0130710:CDS
ATAAAGATGAGTGAAGAATG+TGG 0.710534 1_3:-61118554 Msa0130710:exon
TTCGAGAGGATTCAACAGTG+AGG 0.716670 1_3:+61118336 None:intergenic
TAATTAATCCAGGATCCAAG+GGG 0.729650 1_3:-61114711 Msa0130710:intron
CTTCGATAGAAAAGACAAGG+AGG 0.751104 1_3:-61114682 Msa0130710:CDS
AAGATGAGTGAAGAATGTGG+TGG 0.756172 1_3:-61118551 Msa0130710:CDS
TTGTTGGAATCCATCCACAG+AGG 0.788623 1_3:-61116873 Msa0130710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATTATTGAAATTAAC+TGG - chr1_3:61114986-61115005 Msa0130710:intron 10.0%
!! TTATGTAAAATAATTTATAG+AGG - chr1_3:61115442-61115461 Msa0130710:intron 10.0%
!!! TATTTTTTCTTTTTCTTTTA+TGG - chr1_3:61116282-61116301 Msa0130710:CDS 10.0%
!! ATTAATACACAAAAATAAAA+AGG + chr1_3:61116913-61116932 None:intergenic 10.0%
!! ATTATTTATACAAAAAAGAT+AGG + chr1_3:61117088-61117107 None:intergenic 10.0%
!!! TTAGTTTATTCATTTTTATA+AGG + chr1_3:61117360-61117379 None:intergenic 10.0%
!!! TTTAGAGTTAATTAAATAAA+TGG + chr1_3:61117730-61117749 None:intergenic 10.0%
!!! TTTGCCATTTAAAAAAAATA+TGG + chr1_3:61116395-61116414 None:intergenic 15.0%
!!! TTGTCTAATATATATTTTAC+CGG + chr1_3:61116458-61116477 None:intergenic 15.0%
!!! TTCATTTAACTATTTTAGTA+TGG - chr1_3:61116587-61116606 Msa0130710:intron 15.0%
!! TAAATTGATTATTATGAAGT+AGG + chr1_3:61117137-61117156 None:intergenic 15.0%
!! ATAATAATTAAGAACGTAAA+AGG + chr1_3:61118172-61118191 None:intergenic 15.0%
!! AAGAATTTGGATTATTCATT+TGG + chr1_3:61114637-61114656 None:intergenic 20.0%
!! AACATCAAATATATAGCATA+TGG + chr1_3:61114958-61114977 None:intergenic 20.0%
!!! TGTTTTAAGTTAGGTATATA+GGG - chr1_3:61115073-61115092 Msa0130710:intron 20.0%
!! TGAGTAAATAATATTCTTCT+AGG - chr1_3:61115124-61115143 Msa0130710:intron 20.0%
!!! AAAATAATTTATAGAGGTGT+TGG - chr1_3:61115448-61115467 Msa0130710:intron 20.0%
!!! TATAACATCTGAGAAATTTT+TGG + chr1_3:61116142-61116161 None:intergenic 20.0%
!! ATGTTATATCCTTTAATAGT+AGG - chr1_3:61116154-61116173 Msa0130710:intron 20.0%
!! AAAGAAAAAATAACTCACAT+GGG + chr1_3:61116274-61116293 None:intergenic 20.0%
!! AAAAGAAAAAATAACTCACA+TGG + chr1_3:61116275-61116294 None:intergenic 20.0%
!! TCAAAATATAGGTATAAAGA+TGG + chr1_3:61116367-61116386 None:intergenic 20.0%
!!! AGGTCCATATTTTTTTTAAA+TGG - chr1_3:61116388-61116407 Msa0130710:intron 20.0%
!!! CGCTAATTCATATATTTTTT+TGG + chr1_3:61116483-61116502 None:intergenic 20.0%
!! TGTAAAAAAGTCATATAAAG+TGG - chr1_3:61116882-61116901 Msa0130710:CDS 20.0%
!! GTAAAAAAGTCATATAAAGT+GGG - chr1_3:61116883-61116902 Msa0130710:CDS 20.0%
!! TAAAAAAGTCATATAAAGTG+GGG - chr1_3:61116884-61116903 Msa0130710:CDS 20.0%
!!! ACTTCTATTGATTGTTTAAA+AGG - chr1_3:61116945-61116964 Msa0130710:CDS 20.0%
!! AAAAAAGATAGGAATGAAAA+GGG + chr1_3:61117077-61117096 None:intergenic 20.0%
!! ACATATAATGCATAATGAAT+GGG + chr1_3:61117275-61117294 None:intergenic 20.0%
!! TACATATAATGCATAATGAA+TGG + chr1_3:61117276-61117295 None:intergenic 20.0%
!! TATAAGGAACTAATAATCAT+AGG + chr1_3:61117344-61117363 None:intergenic 20.0%
!!! ATTAACCCTAGATTTTAATT+AGG + chr1_3:61117480-61117499 None:intergenic 20.0%
!! CGAAATTCTGAATATTTATA+TGG + chr1_3:61117515-61117534 None:intergenic 20.0%
!! ACGAAATTGTCATTATTTAT+AGG - chr1_3:61117702-61117721 Msa0130710:intron 20.0%
!! CGAAATTGTCATTATTTATA+GGG - chr1_3:61117703-61117722 Msa0130710:intron 20.0%
!! ATTGACATAATAATTAATCC+AGG - chr1_3:61118342-61118361 Msa0130710:CDS 20.0%
! TTGTTAGTGATTCCTTTAAT+TGG + chr1_3:61114456-61114475 None:intergenic 25.0%
! CAAATTCTCTTTCTTCAAAT+TGG - chr1_3:61114585-61114604 Msa0130710:CDS 25.0%
!!! GACAAATCTTTTAGAGTTTT+AGG - chr1_3:61115025-61115044 Msa0130710:intron 25.0%
!!! TAGAAGTTTTGTGAAGTTTA+AGG - chr1_3:61115049-61115068 Msa0130710:intron 25.0%
!!! AGAAGTTTTGTGAAGTTTAA+GGG - chr1_3:61115050-61115069 Msa0130710:intron 25.0%
!!! GTGTTTTAAGTTAGGTATAT+AGG - chr1_3:61115072-61115091 Msa0130710:intron 25.0%
!!! TTATAGATAGTGGAAAACAA+AGG + chr1_3:61115150-61115169 None:intergenic 25.0%
!!! AATTTTGAGAAGCACTTAAA+TGG - chr1_3:61115643-61115662 Msa0130710:intron 25.0%
!!! ATTTTGAGAAGCACTTAAAT+GGG - chr1_3:61115644-61115663 Msa0130710:intron 25.0%
! CTCTTATTGAGAATAATGAA+AGG - chr1_3:61115677-61115696 Msa0130710:intron 25.0%
! TAATTCTAATTCCTCCAATA+TGG - chr1_3:61115810-61115829 Msa0130710:intron 25.0%
!! GTAGTTTGAAATGACAATTA+GGG + chr1_3:61115864-61115883 None:intergenic 25.0%
! TATTCATGTCTTGAATATCA+TGG + chr1_3:61115951-61115970 None:intergenic 25.0%
! TGATATTCAAGACATGAATA+AGG - chr1_3:61115951-61115970 Msa0130710:intron 25.0%
! AGAAAATCACTTAATCCAAA+TGG - chr1_3:61116027-61116046 Msa0130710:intron 25.0%
!! ACAATGGCAAATTTTATGAA+GGG - chr1_3:61116094-61116113 Msa0130710:CDS 25.0%
! AAGTTTGAGTATCTCATATT+AGG + chr1_3:61116216-61116235 None:intergenic 25.0%
!!! CTTTATACCTATATTTTGAG+AGG - chr1_3:61116368-61116387 Msa0130710:intron 25.0%
! TTGTCTCTATAAATTAGACA+TGG - chr1_3:61116532-61116551 Msa0130710:intron 25.0%
! AACAACAAATTCATCTTCAA+AGG - chr1_3:61116808-61116827 Msa0130710:intron 25.0%
! AAAAAGATAGGAATGAAAAG+GGG + chr1_3:61117076-61117095 None:intergenic 25.0%
! CAAAAAAGATAGGAATGAAA+AGG + chr1_3:61117078-61117097 None:intergenic 25.0%
! AGATGACCTAATTAAAATCT+AGG - chr1_3:61117471-61117490 Msa0130710:CDS 25.0%
! GATGACCTAATTAAAATCTA+GGG - chr1_3:61117472-61117491 Msa0130710:CDS 25.0%
!!! AAGTGCACTTTTATTTTGTA+GGG + chr1_3:61117546-61117565 None:intergenic 25.0%
!!! AAAGTGCACTTTTATTTTGT+AGG + chr1_3:61117547-61117566 None:intergenic 25.0%
!! AAAAATTCTATGAGCACTTT+TGG - chr1_3:61117611-61117630 Msa0130710:intron 25.0%
! AAGCTAACAAAAAATGTTAC+TGG - chr1_3:61117642-61117661 Msa0130710:intron 25.0%
! AGCTAACAAAAAATGTTACT+GGG - chr1_3:61117643-61117662 Msa0130710:intron 25.0%
!!! TGCAATTTTGTAATTTGTAG+CGG + chr1_3:61117805-61117824 None:intergenic 25.0%
! TGATCATTTCAGTCATAATT+TGG - chr1_3:61118019-61118038 Msa0130710:intron 25.0%
! TGTTCTCTCTATAAACTATA+GGG + chr1_3:61118462-61118481 None:intergenic 25.0%
! TTGTTCTCTCTATAAACTAT+AGG + chr1_3:61118463-61118482 None:intergenic 25.0%
! ATAGTTTATAGAGAGAACAA+TGG - chr1_3:61118463-61118482 Msa0130710:CDS 25.0%
!! ATACAACCACATACTATTTT+TGG + chr1_3:61118561-61118580 None:intergenic 25.0%
!!! ACTATAATTTGCTAGAATCT+TGG - chr1_3:61118589-61118608 Msa0130710:five_prime_UTR 25.0%
TTAGTGATTCCTTTAATTGG+TGG + chr1_3:61114453-61114472 None:intergenic 30.0%
ATAAAGATGAGTGAAGAATG+TGG - chr1_3:61114509-61114528 Msa0130710:three_prime_UTR 30.0%
ATAAAACATGACTCCATAGT+TGG + chr1_3:61114820-61114839 None:intergenic 30.0%
!!! GTTTAAGGGTGTTTTAAGTT+AGG - chr1_3:61115064-61115083 Msa0130710:intron 30.0%
AAGTTAGGTATATAGGGTTA+AGG - chr1_3:61115079-61115098 Msa0130710:intron 30.0%
TGTTAGCATGTTATAGATAG+TGG + chr1_3:61115160-61115179 None:intergenic 30.0%
ATATCTTACAGAATCCAAGA+GGG + chr1_3:61115282-61115301 None:intergenic 30.0%
TATATCTTACAGAATCCAAG+AGG + chr1_3:61115283-61115302 None:intergenic 30.0%
TTGCACAATAACCAAGAAAT+TGG - chr1_3:61115484-61115503 Msa0130710:intron 30.0%
AGAAATTCTCTCCAATTTCT+TGG + chr1_3:61115498-61115517 None:intergenic 30.0%
AGAAATTGGAGAGAATTTCT+TGG - chr1_3:61115498-61115517 Msa0130710:intron 30.0%
ATCAAACATAGTGTTTGTCA+TGG + chr1_3:61115542-61115561 None:intergenic 30.0%
AGAAACTTGATACAACAAGT+TGG - chr1_3:61115584-61115603 Msa0130710:intron 30.0%
GAAACTTGATACAACAAGTT+GGG - chr1_3:61115585-61115604 Msa0130710:intron 30.0%
AGTTGGGAATATAATACTAG+TGG - chr1_3:61115601-61115620 Msa0130710:intron 30.0%
TGTTTGTTTGTGAATCAAAG+TGG + chr1_3:61115768-61115787 None:intergenic 30.0%
!! GTATTGATGATGATCCATAT+TGG + chr1_3:61115827-61115846 None:intergenic 30.0%
! GGTAGTTTGAAATGACAATT+AGG + chr1_3:61115865-61115884 None:intergenic 30.0%
!! TGTCATTTCAAACTACCTTT+TGG - chr1_3:61115868-61115887 Msa0130710:CDS 30.0%
! AATCCAAATGGATTTCTTGA+TGG - chr1_3:61116039-61116058 Msa0130710:intron 30.0%
! ATCCAAATGGATTTCTTGAT+GGG - chr1_3:61116040-61116059 Msa0130710:intron 30.0%
! TAATAATAGCCTTAACTCAG+TGG - chr1_3:61116065-61116084 Msa0130710:CDS 30.0%
! AATAATAGCCTTAACTCAGT+GGG - chr1_3:61116066-61116085 Msa0130710:CDS 30.0%
! CACAATGGCAAATTTTATGA+AGG - chr1_3:61116093-61116112 Msa0130710:CDS 30.0%
ATATCCTTTAATAGTAGGCT+TGG - chr1_3:61116159-61116178 Msa0130710:intron 30.0%
TTATCTGAGTCAAAGAAACA+AGG - chr1_3:61116234-61116253 Msa0130710:intron 30.0%
TATCTGAGTCAAAGAAACAA+GGG - chr1_3:61116235-61116254 Msa0130710:intron 30.0%
AAAAAATAACTCACATGGGA+TGG + chr1_3:61116270-61116289 None:intergenic 30.0%
ATATGGACCTCTCAAAATAT+AGG + chr1_3:61116378-61116397 None:intergenic 30.0%
! GCTCATAGAATTTTTGTTAC+AGG + chr1_3:61117606-61117625 None:intergenic 30.0%
GGTCCAAATATAGATTATCA+AGG + chr1_3:61117960-61117979 None:intergenic 30.0%
!! GTCAGTTTTTACTTGCTTTT+CGG + chr1_3:61117981-61118000 None:intergenic 30.0%
CATCTTTACTACCAATAGTT+TGG + chr1_3:61118057-61118076 None:intergenic 30.0%
TGAATTGTTTGTGTTTGAAG+CGG + chr1_3:61118080-61118099 None:intergenic 30.0%
AATAATTAATCCAGGATCCA+AGG - chr1_3:61118350-61118369 Msa0130710:CDS 30.0%
ATAATTAATCCAGGATCCAA+GGG - chr1_3:61118351-61118370 Msa0130710:CDS 30.0%
GTTCTCTCTATAAACTATAG+GGG + chr1_3:61118461-61118480 None:intergenic 30.0%
CTTATGCCAAAAATAGTATG+TGG - chr1_3:61118552-61118571 Msa0130710:exon 30.0%
TTAATTGGTGGAATGGATCT+AGG + chr1_3:61114441-61114460 None:intergenic 35.0%
AGATCCATTCCACCAATTAA+AGG - chr1_3:61114441-61114460 Msa0130710:three_prime_UTR 35.0%
GATTCCTTTAATTGGTGGAA+TGG + chr1_3:61114448-61114467 None:intergenic 35.0%
TGAAGATACCACCAGTTTAA+TGG + chr1_3:61114563-61114582 None:intergenic 35.0%
TCACAAGAAGAGGAAGAATT+TGG + chr1_3:61114650-61114669 None:intergenic 35.0%
AAATTCTTCCTCTTCTTGTG+AGG - chr1_3:61114649-61114668 Msa0130710:CDS 35.0%
!! TCCTTTGTTCTGAAATTCTG+AGG + chr1_3:61114926-61114945 None:intergenic 35.0%
! GGTTTTTATTGGTATGTGGA+TGG + chr1_3:61115261-61115280 None:intergenic 35.0%
! AGAGGGTTTTTATTGGTATG+TGG + chr1_3:61115265-61115284 None:intergenic 35.0%
CATACCAATAAAAACCCTCT+TGG - chr1_3:61115265-61115284 Msa0130710:intron 35.0%
! GAATCCAAGAGGGTTTTTAT+TGG + chr1_3:61115272-61115291 None:intergenic 35.0%
!! TATAGAGGTGTTGGATCAAA+TGG - chr1_3:61115457-61115476 Msa0130710:intron 35.0%
ATTGGAGAGAATTTCTTGGA+TGG - chr1_3:61115502-61115521 Msa0130710:intron 35.0%
TTCTTCAAATAGTCACAAGC+TGG + chr1_3:61115568-61115587 None:intergenic 35.0%
TATCCAATCTTGTAAGCACT+TGG - chr1_3:61115710-61115729 Msa0130710:intron 35.0%
!! TTGATGATGATCCATATTGG+AGG + chr1_3:61115824-61115843 None:intergenic 35.0%
TTCTCTAATAGTGCATGATG+TGG + chr1_3:61115899-61115918 None:intergenic 35.0%
ACATCATGCACTATTAGAGA+AGG - chr1_3:61115898-61115917 Msa0130710:intron 35.0%
CTTGAATATCATGGCAACTA+GGG + chr1_3:61115942-61115961 None:intergenic 35.0%
TCTTGAATATCATGGCAACT+AGG + chr1_3:61115943-61115962 None:intergenic 35.0%
AACCCATCAAGAAATCCATT+TGG + chr1_3:61116045-61116064 None:intergenic 35.0%
TTGGTGCATGGTGAAATATT+TGG + chr1_3:61116123-61116142 None:intergenic 35.0%
!!! TCTGAGAAATTTTTGGTGCA+TGG + chr1_3:61116135-61116154 None:intergenic 35.0%
AATAGTAAAGTCTCTACACC+AGG - chr1_3:61116422-61116441 Msa0130710:intron 35.0%
AGATCTGAAGAATCATCAGA+AGG - chr1_3:61116755-61116774 Msa0130710:intron 35.0%
! GTTGTTGAAGTATCTTGCTT+AGG + chr1_3:61116794-61116813 None:intergenic 35.0%
!! TGGAGACACAATTTGTTGAA+GGG + chr1_3:61117010-61117029 None:intergenic 35.0%
!! ATGGAGACACAATTTGTTGA+AGG + chr1_3:61117011-61117030 None:intergenic 35.0%
CAACAAATTGTGTCTCCATT+TGG - chr1_3:61117012-61117031 Msa0130710:CDS 35.0%
AATTGTGTCTCCATTTGGAA+AGG - chr1_3:61117017-61117036 Msa0130710:CDS 35.0%
TCTGTAGTAACCTTTCCAAA+TGG + chr1_3:61117030-61117049 None:intergenic 35.0%
TGAAGCTCATGAGATATTCA+TGG + chr1_3:61117415-61117434 None:intergenic 35.0%
TAAGATTAACATACAGGCAG+GGG + chr1_3:61117781-61117800 None:intergenic 35.0%
CTAAGATTAACATACAGGCA+GGG + chr1_3:61117782-61117801 None:intergenic 35.0%
! CGGCCTTGATAATCTATATT+TGG - chr1_3:61117954-61117973 Msa0130710:intron 35.0%
TTCAGTCATAATTTGGACCA+AGG - chr1_3:61118026-61118045 Msa0130710:intron 35.0%
GTGAATTTGCCTTCAAGTAA+GGG + chr1_3:61118210-61118229 None:intergenic 35.0%
TGTGAATTTGCCTTCAAGTA+AGG + chr1_3:61118211-61118230 None:intergenic 35.0%
TAATTAATCCAGGATCCAAG+GGG - chr1_3:61118352-61118371 Msa0130710:CDS 35.0%
CTACTTCGATAGAAAAGACA+AGG - chr1_3:61118378-61118397 Msa0130710:CDS 35.0%
AACAAAGACCTTTACTTCGA+AGG + chr1_3:61118420-61118439 None:intergenic 35.0%
CGTATAGAGGATGTATGTAT+AGG - chr1_3:61118506-61118525 Msa0130710:CDS 35.0%
AAGATGAGTGAAGAATGTGG+TGG - chr1_3:61114512-61114531 Msa0130710:three_prime_UTR 40.0%
CCAGTTTAATGGAGTAGTAG+AGG + chr1_3:61114552-61114571 None:intergenic 40.0%
CCTCTACTACTCCATTAAAC+TGG - chr1_3:61114549-61114568 Msa0130710:exon 40.0%
CTACTACTCCATTAAACTGG+TGG - chr1_3:61114552-61114571 Msa0130710:exon 40.0%
GGAACGATGTTAAACATGCA+TGG - chr1_3:61114606-61114625 Msa0130710:CDS 40.0%
ATCTTGATCCTCACAAGAAG+AGG + chr1_3:61114660-61114679 None:intergenic 40.0%
ATTCAACAGTGAGGCTTGAA+TGG + chr1_3:61114721-61114740 None:intergenic 40.0%
TTGGTTATCCGAAGCATGTT+CGG + chr1_3:61114801-61114820 None:intergenic 40.0%
ATGCTTCGGATAACCAACTA+TGG - chr1_3:61114804-61114823 Msa0130710:intron 40.0%
GCCTCAGAATTTCAGAACAA+AGG - chr1_3:61114922-61114941 Msa0130710:intron 40.0%
GGTATGTGGATGGATATACA+AGG + chr1_3:61115251-61115270 None:intergenic 40.0%
AGACCAAGTGCTTACAAGAT+TGG + chr1_3:61115716-61115735 None:intergenic 40.0%
CAAAGTGGCTACTAACTTCA+GGG + chr1_3:61115753-61115772 None:intergenic 40.0%
TCAAAGTGGCTACTAACTTC+AGG + chr1_3:61115754-61115773 None:intergenic 40.0%
CATGATGTGGAATCTCCAAA+AGG + chr1_3:61115886-61115905 None:intergenic 40.0%
TGCACTATTAGAGAAGGAGT+AGG - chr1_3:61115904-61115923 Msa0130710:intron 40.0%
CCTTCCAAGCCTACTATTAA+AGG + chr1_3:61116166-61116185 None:intergenic 40.0%
CCTTTAATAGTAGGCTTGGA+AGG - chr1_3:61116163-61116182 Msa0130710:intron 40.0%
TATCTCATATTAGGCCTCTG+TGG + chr1_3:61116207-61116226 None:intergenic 40.0%
ATGCAGATGAGAACCACTAA+TGG - chr1_3:61116695-61116714 Msa0130710:intron 40.0%
ATGAGAACCACTAATGGAAG+AGG - chr1_3:61116701-61116720 Msa0130710:intron 40.0%
TTGTCTCCTAGCTTGACTTT+AGG + chr1_3:61116979-61116998 None:intergenic 40.0%
ATAGGAATGAAAAGGGGAAG+AGG + chr1_3:61117070-61117089 None:intergenic 40.0%
!! TCTGTGCTGTTTGAAGCAAT+AGG - chr1_3:61117195-61117214 Msa0130710:CDS 40.0%
!! CTGTGCTGTTTGAAGCAATA+GGG - chr1_3:61117196-61117215 Msa0130710:CDS 40.0%
TTTCCATAATGATACGCACC+TGG + chr1_3:61117248-61117267 None:intergenic 40.0%
GCTAAGATTAACATACAGGC+AGG + chr1_3:61117783-61117802 None:intergenic 40.0%
AGCGGCTAAGATTAACATAC+AGG + chr1_3:61117787-61117806 None:intergenic 40.0%
! TTTCTAGGAACTGAAAGGGT+AGG + chr1_3:61117933-61117952 None:intergenic 40.0%
!! CCGTTTTCTAGGAACTGAAA+GGG + chr1_3:61117937-61117956 None:intergenic 40.0%
CCCTTTCAGTTCCTAGAAAA+CGG - chr1_3:61117934-61117953 Msa0130710:intron 40.0%
!! GATTATCAAGGCCGTTTTCT+AGG + chr1_3:61117948-61117967 None:intergenic 40.0%
CCAATAGTTTGGTAGAACCT+TGG + chr1_3:61118046-61118065 None:intergenic 40.0%
CCAAGGTTCTACCAAACTAT+TGG - chr1_3:61118043-61118062 Msa0130710:intron 40.0%
CTTGAAGGCAAATTCACACA+AGG - chr1_3:61118213-61118232 Msa0130710:intron 40.0%
CTTCGATAGAAAAGACAAGG+AGG - chr1_3:61118381-61118400 Msa0130710:CDS 40.0%
AAGCTAGACCTTCGAAGTAA+AGG - chr1_3:61118409-61118428 Msa0130710:CDS 40.0%
AGAACAATGGACCAGATTAC+TGG - chr1_3:61118476-61118495 Msa0130710:CDS 40.0%
TACATACATCCTCTATACGC+TGG + chr1_3:61118505-61118524 None:intergenic 40.0%
AACAGTGAGGCTTGAATGGT+TGG + chr1_3:61114717-61114736 None:intergenic 45.0%
TTCGAGAGGATTCAACAGTG+AGG + chr1_3:61114730-61114749 None:intergenic 45.0%
TACTAACTTCAGGGTCAGGT+GGG + chr1_3:61115744-61115763 None:intergenic 45.0%
CATGCAAGTGAAGTGATGCA+AGG - chr1_3:61115994-61116013 Msa0130710:intron 45.0%
TGTGATCTCCCACTGAGTTA+AGG + chr1_3:61116077-61116096 None:intergenic 45.0%
AACTCAGTGGGAGATCACAA+TGG - chr1_3:61116078-61116097 Msa0130710:CDS 45.0%
! TGTGGATGGATTCCAACAAC+TGG + chr1_3:61116189-61116208 None:intergenic 45.0%
TTGTTGGAATCCATCCACAG+AGG - chr1_3:61116190-61116209 Msa0130710:intron 45.0%
TCATATTAGGCCTCTGTGGA+TGG + chr1_3:61116203-61116222 None:intergenic 45.0%
AACCACTAATGGAAGAGGAG+AGG - chr1_3:61116706-61116725 Msa0130710:intron 45.0%
ACCACTAATGGAAGAGGAGA+GGG - chr1_3:61116707-61116726 Msa0130710:intron 45.0%
CAAGCACCTAAAGTCAAGCT+AGG - chr1_3:61116970-61116989 Msa0130710:CDS 45.0%
! ATGAAAAGGGGAAGAGGTGT+GGG + chr1_3:61117064-61117083 None:intergenic 45.0%
AATGAAAAGGGGAAGAGGTG+TGG + chr1_3:61117065-61117084 None:intergenic 45.0%
GTATCTTGAAGAGCAAGTCC+AGG - chr1_3:61117227-61117246 Msa0130710:CDS 45.0%
AGTCCAGGTGCGTATCATTA+TGG - chr1_3:61117242-61117261 Msa0130710:CDS 45.0%
!! GCCGTTTTCTAGGAACTGAA+AGG + chr1_3:61117938-61117957 None:intergenic 45.0%
ACTGAGCAACCCTTACTTGA+AGG - chr1_3:61118198-61118217 Msa0130710:intron 45.0%
! ACTATAGGGGTACATGACGT+AGG + chr1_3:61118448-61118467 None:intergenic 45.0%
ATGAAGTCGTTGGAGGAAGG+TGG + chr1_3:61114776-61114795 None:intergenic 50.0%
ACCTTCCTCCAACGACTTCA+TGG - chr1_3:61114775-61114794 Msa0130710:intron 50.0%
ATGTTCGGCCATGAAGTCGT+TGG + chr1_3:61114786-61114805 None:intergenic 50.0%
CTTCATGGCCGAACATGCTT+CGG - chr1_3:61114790-61114809 Msa0130710:intron 50.0%
ACTAACTTCAGGGTCAGGTG+GGG + chr1_3:61115743-61115762 None:intergenic 50.0%
CTACTAACTTCAGGGTCAGG+TGG + chr1_3:61115745-61115764 None:intergenic 50.0%
TGGCTACTAACTTCAGGGTC+AGG + chr1_3:61115748-61115767 None:intergenic 50.0%
TACACCAGGCGAATAGAGAC+CGG - chr1_3:61116436-61116455 Msa0130710:intron 50.0%
TTTACCGGTCTCTATTCGCC+TGG + chr1_3:61116443-61116462 None:intergenic 50.0%
TCCCTCTCCTCTTCCATTAG+TGG + chr1_3:61116711-61116730 None:intergenic 50.0%
! TGAAAAGGGGAAGAGGTGTG+GGG + chr1_3:61117063-61117082 None:intergenic 50.0%
CTATCGAAGTAGCTTCCCCT+TGG + chr1_3:61118370-61118389 None:intergenic 50.0%
TACGCTGGTGTCCAGTAATC+TGG + chr1_3:61118490-61118509 None:intergenic 50.0%
TACTGGACACCAGCGTATAG+AGG - chr1_3:61118493-61118512 Msa0130710:CDS 50.0%
CTCGACGAACACTCTTCGAG+AGG + chr1_3:61114744-61114763 None:intergenic 55.0%
TTGGAGGAAGGTGGTGCATG+TGG + chr1_3:61114767-61114786 None:intergenic 55.0%
GCCATGAAGTCGTTGGAGGA+AGG + chr1_3:61114779-61114798 None:intergenic 55.0%
TTCGGCCATGAAGTCGTTGG+AGG + chr1_3:61114783-61114802 None:intergenic 55.0%
AGGCTTGGAAGGCCAGTTGT+TGG - chr1_3:61116174-61116193 Msa0130710:intron 55.0%
AGTAGCTTCCCCTTGGATCC+TGG + chr1_3:61118363-61118382 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 61114438 61118647 61114438 ID=Msa0130710;Name=Msa0130710
chr1_3 mRNA 61114438 61118647 61114438 ID=Msa0130710-mRNA-1;Parent=Msa0130710;Name=Msa0130710-mRNA-1;_AED=0.07;_eAED=0.07;_QI=77|1|1|1|1|1|7|116|537
chr1_3 exon 61114438 61114721 61114438 ID=Msa0130710-mRNA-1:exon:20221;Parent=Msa0130710-mRNA-1
chr1_3 exon 61114851 61114889 61114851 ID=Msa0130710-mRNA-1:exon:20220;Parent=Msa0130710-mRNA-1
chr1_3 exon 61115837 61115902 61115837 ID=Msa0130710-mRNA-1:exon:20219;Parent=Msa0130710-mRNA-1
chr1_3 exon 61116047 61116118 61116047 ID=Msa0130710-mRNA-1:exon:20218;Parent=Msa0130710-mRNA-1
chr1_3 exon 61116256 61116384 61116256 ID=Msa0130710-mRNA-1:exon:20217;Parent=Msa0130710-mRNA-1
chr1_3 exon 61116810 61117623 61116810 ID=Msa0130710-mRNA-1:exon:20216;Parent=Msa0130710-mRNA-1
chr1_3 exon 61118245 61118647 61118245 ID=Msa0130710-mRNA-1:exon:20215;Parent=Msa0130710-mRNA-1
chr1_3 five_prime_UTR 61118571 61118647 61118571 ID=Msa0130710-mRNA-1:five_prime_utr;Parent=Msa0130710-mRNA-1
chr1_3 CDS 61118245 61118570 61118245 ID=Msa0130710-mRNA-1:cds;Parent=Msa0130710-mRNA-1
chr1_3 CDS 61116810 61117623 61116810 ID=Msa0130710-mRNA-1:cds;Parent=Msa0130710-mRNA-1
chr1_3 CDS 61116256 61116384 61116256 ID=Msa0130710-mRNA-1:cds;Parent=Msa0130710-mRNA-1
chr1_3 CDS 61116047 61116118 61116047 ID=Msa0130710-mRNA-1:cds;Parent=Msa0130710-mRNA-1
chr1_3 CDS 61115837 61115902 61115837 ID=Msa0130710-mRNA-1:cds;Parent=Msa0130710-mRNA-1
chr1_3 CDS 61114851 61114889 61114851 ID=Msa0130710-mRNA-1:cds;Parent=Msa0130710-mRNA-1
chr1_3 CDS 61114554 61114721 61114554 ID=Msa0130710-mRNA-1:cds;Parent=Msa0130710-mRNA-1
chr1_3 three_prime_UTR 61114438 61114553 61114438 ID=Msa0130710-mRNA-1:three_prime_utr;Parent=Msa0130710-mRNA-1
Gene Sequence

>Msa0130710

ATGAGTGAAGAATGTGGTGGAAACACTATTGCTACCTCTACTACTCCATTAAACTGGTGGTATCTTCAAGCAAATTCTCTTTCTTCAAATTGGAACGATGTTAAACATGCATGGAACAACCAAATGAATAATCCAAATTCTTCCTCTTCTTGTGAGGATCAAGATATATCTGTTTCTTCTACATCTTTCACTAATGCATCCAACCATTCAAGCCTCACTGTTGAATCCTCTCGAAGAGTGTTCGTCGAGCCACATGCACCACCTTCCTCCAACGACTTCATGGCCGAACATGCTTCGGATAACCAACTATGGAGTCATGTTTTATCAGGTGTTGGATCAAATGGAGAGTTGCACAATAACCAAGAAATTGGAGAGAATTTCTTGGATGGACTATCATCAAAAACCATGACAAACACTATGTTTGATCAACCAGCTTGTGACTATTTGAAGAAACTTGATACAACAAGTTGGGAATATAATACTAGTGGATCAACTTCATTCAATACTAATTTTGAGAAGCACTTAAATGGGTACAGTGAAGCTCTTATTGAGAATAATGAAAGGTTGACAAAGTTATCCAATCTTGTAAGCACTTGGTCTATTGCCCCACCTGACCCTGAAGTTAGTAGCCACTTTGATTCACAAACAAACAACAATTTGTCTACTAATTTGAATAATTCTAATTCCTCCAATATGGATCATCATCAATACACACATGATTCTGACCCTAATTGTCATTTCAAACTACCTTTTGGAGATTCCACATCATGCACTATTAGAGAAGGAGTAGGTAATAAAATGTTCCCTAGTTGCCATGATATTCAAGACATGAATAAGGTTAAACAAGAATATCATCATCATGCAAGTGAAGTGATGCAAGGAAATGTGTTTAGAAAATCACTTAATCCAAATGGATTTCTTGATGGGTTTAATAATAGCCTTAACTCAGTGGGAGATCACAATGGCAAATTTTATGAAGGGTTGCCAAATATTTCACCATGCACCAAAAATTTCTCAGATGTTATATCCTTTAATAGTAGGCTTGGAAGGCCAGTTGTTGGAATCCATCCACAGAGGCCTAATATGAGATACTCAAACTTATCTGAGTCAAAGAAACAAGGGCTTCAGACACCATCCCATATGAGAACCACTAATGGAAGAGGAGAGGGAACAACACGTGAAGTAAAGAAGAAAAGATCTGAAGAATCATCAGAAGGAAGTTTGAAGAAACCTAAGCAAGATACTTCAACAACAAATTCATCTTCAAAGGTGCAAGCACCTAAAGTCAAGCTAGGAGACAAGATCACAGCCCTTCAACAAATTGTGTCTCCATTTGGAAAGACTGATACAGCATCTGTGCTGTTTGAAGCAATAGGGTACATAAAGTATCTTGAAGAGCAAGTCCAGTTACTGAGCAACCCTTACTTGAAGGCAAATTCACACAAGGATCCAAGGGGAAGCTACTTCGATAGAAAAGACAAGGAGGATGCAAAGCTAGACCTTCGAAGTAAAGGTCTTTGTTTAGTTCCTACGTCATGTACCCCTATAGTTTATAGAGAGAACAATGGACCAGATTACTGGACACCAGCGTATAGAGGATGTATGTATAGGTGA
Protein sequence

>Msa0130710

MSEECGGNTIATSTTPLNWWYLQANSLSSNWNDVKHAWNNQMNNPNSSSSCEDQDISVSSTSFTNASNHSSLTVESSRRVFVEPHAPPSSNDFMAEHASDNQLWSHVLSGVGSNGELHNNQEIGENFLDGLSSKTMTNTMFDQPACDYLKKLDTTSWEYNTSGSTSFNTNFEKHLNGYSEALIENNERLTKLSNLVSTWSIAPPDPEVSSHFDSQTNNNLSTNLNNSNSSNMDHHQYTHDSDPNCHFKLPFGDSTSCTIREGVGNKMFPSCHDIQDMNKVKQEYHHHASEVMQGNVFRKSLNPNGFLDGFNNSLNSVGDHNGKFYEGLPNISPCTKNFSDVISFNSRLGRPVVGIHPQRPNMRYSNLSESKKQGLQTPSHMRTTNGRGEGTTREVKKKRSEESSEGSLKKPKQDTSTTNSSSKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKYLEEQVQLLSNPYLKANSHKDPRGSYFDRKDKEDAKLDLRSKGLCLVPTSCTPIVYRENNGPDYWTPAYRGCMYR*