AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1404810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404810 MtrunA17_Chr4g0064601 98.288 292 5 0 1 292 1 292 0.0 589
Msa1404810 MtrunA17_Chr4g0034391 35.185 270 140 9 42 289 70 326 1.99e-32 125
Msa1404810 MtrunA17_Chr4g0009941 27.715 267 147 11 56 292 4 254 2.98e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404810 AT2G34460.1 72.963 270 65 3 22 289 14 277 2.76e-141 399
Msa1404810 AT3G18890.1 33.453 278 149 11 41 292 62 329 4.64e-30 119
Msa1404810 AT2G37660.1 30.952 168 99 7 135 292 164 324 1.20e-12 67.8
Msa1404810 AT4G31530.1 31.746 315 158 17 8 286 25 318 8.29e-11 62.4

Find 96 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGCAGGTTGACAATTT+TGG 0.186826 tig0023091:-25887 Msa1404810:intron
TGATATCACGATCCATATTT+AGG 0.198059 tig0023091:+25048 None:intergenic
TGACGTGTTAAACCTAAATA+TGG 0.250892 tig0023091:-25060 Msa1404810:three_prime_UTR
AGCGGCTCCATTGACTAAAA+TGG 0.269340 tig0023091:+25802 None:intergenic
TCACAGTGGAAGAGCTTAAA+TGG 0.290715 tig0023091:-27573 Msa1404810:exon
CACCTTAGTGGCAAAATTAC+AGG 0.310873 tig0023091:-25729 Msa1404810:CDS
TGCAACTTGATCTCTGGATA+TGG 0.317263 tig0023091:+25480 None:intergenic
CCACAGGCTTTCGGCCAGGC+TGG 0.324155 tig0023091:-26686 Msa1404810:CDS
GTTGAGGAAGGGAAGAGATT+TGG 0.346298 tig0023091:+27466 None:intergenic
CGCGCATACCATGATCTCTT+TGG 0.346559 tig0023091:-25376 Msa1404810:CDS
CAGAGTTGTAGCGCCTTGTT+TGG 0.347380 tig0023091:-27616 Msa1404810:five_prime_UTR
TATTCTATCTTCCCCGTTGA+AGG 0.359386 tig0023091:-25156 Msa1404810:three_prime_UTR
TAGTTTGTGCCACAGGCTTT+CGG 0.360254 tig0023091:-26695 Msa1404810:CDS
CAGATATTATCGCTGAACTA+TGG 0.361240 tig0023091:+25351 None:intergenic
GAAAATCATATCAGGAAATC+TGG 0.374335 tig0023091:-25704 Msa1404810:CDS
GATAAGCTAGCTGAAGCAAT+TGG 0.379075 tig0023091:-26735 Msa1404810:CDS
ATTCTATACTAACCTTCAAC+GGG 0.387065 tig0023091:+25144 None:intergenic
TGGATATGGAACCTTCATAA+AGG 0.390225 tig0023091:+25494 None:intergenic
TACAGGCAGAAAATCATATC+AGG 0.402158 tig0023091:-25712 Msa1404810:CDS
TCCTACTGGAAATGTTGTTA+TGG 0.413074 tig0023091:-25636 Msa1404810:CDS
ATAGAATTTCAATACAAAAC+TGG 0.415520 tig0023091:-25128 Msa1404810:three_prime_UTR
CACAGGCTTTCGGCCAGGCT+GGG 0.417213 tig0023091:-26685 Msa1404810:CDS
GATATTTACTCACATTACTT+TGG 0.417773 tig0023091:+25206 None:intergenic
AGGAAGAGGGAGCGGTGAAT+TGG 0.419663 tig0023091:+27495 None:intergenic
ATAAGCTAGCTGAAGCAATT+GGG 0.423531 tig0023091:-26734 Msa1404810:CDS
AGATTTGGTTCTGAAGGAAG+AGG 0.436139 tig0023091:+27481 None:intergenic
GTAGGGTTTCTTGCAATAAG+AGG 0.436214 tig0023091:+27545 None:intergenic
TGTGCCACAGGCTTTCGGCC+AGG 0.448901 tig0023091:-26690 Msa1404810:CDS
AGCAAGAGATGATGGCATAA+TGG 0.456815 tig0023091:+25099 None:intergenic
TTAGTCAATGGAGCCGCTAT+GGG 0.459534 tig0023091:-25797 Msa1404810:CDS
GATAACATGAAAGGCATGCT+TGG 0.462729 tig0023091:+25184 None:intergenic
TTTAGTCAATGGAGCCGCTA+TGG 0.462769 tig0023091:-25798 Msa1404810:CDS
AATTCTATACTAACCTTCAA+CGG 0.463462 tig0023091:+25143 None:intergenic
AAACTTACAAATTGAAGAGA+TGG 0.465083 tig0023091:+27176 None:intergenic
TACTTCTGCAACTTGATCTC+TGG 0.466748 tig0023091:+25474 None:intergenic
TTGGTTGCAGATTAGCAAAT+CGG 0.469195 tig0023091:-25318 Msa1404810:three_prime_UTR
GCTGGAGCTACTGGTAGTAC+TGG 0.469225 tig0023091:-27293 Msa1404810:CDS
GATGGGAAAGTGTGGAATGT+AGG 0.469287 tig0023091:+27527 None:intergenic
CAGCGATAATATCTGAGATT+CGG 0.474779 tig0023091:-25343 Msa1404810:exon
GGGAAGAGATTTGGTTCTGA+AGG 0.477299 tig0023091:+27475 None:intergenic
GGATTTGCTTGCCCCATGGA+AGG 0.484251 tig0023091:-26664 Msa1404810:intron
AGATCATGGTATGCGCGCTT+AGG 0.484675 tig0023091:+25382 None:intergenic
ATGGGAAAGTGTGGAATGTA+GGG 0.487437 tig0023091:+27528 None:intergenic
GGATATGGAACCTTCATAAA+GGG 0.488764 tig0023091:+25495 None:intergenic
TAAAGCTGGGGTTAGAGACT+TGG 0.490510 tig0023091:-27228 Msa1404810:CDS
CTATGGAACCAAAGAGATCA+TGG 0.496271 tig0023091:+25368 None:intergenic
GAAGCAGTAGTTTGTGCCAC+AGG 0.496380 tig0023091:-26702 Msa1404810:CDS
TACAAATTGAAGAGATGGGT+TGG 0.504301 tig0023091:+27181 None:intergenic
GCTGGGATTTGCTTGCCCCA+TGG 0.510222 tig0023091:-26668 Msa1404810:CDS
GTGGAACAGTTACTTGCAAA+GGG 0.511281 tig0023091:-27260 Msa1404810:CDS
TGTCAGGACACCCTTTATGA+AGG 0.512820 tig0023091:-25505 Msa1404810:intron
TAGAAGAAAGCAAGAGATGA+TGG 0.513897 tig0023091:+25091 None:intergenic
AAAATTAACAAACCTTCCAT+GGG 0.515977 tig0023091:+26652 None:intergenic
CGTGGAACAGTTACTTGCAA+AGG 0.522560 tig0023091:-27261 Msa1404810:CDS
CTTTCCTGCATGCTTCAACA+AGG 0.527070 tig0023091:+25855 None:intergenic
ACAACTTTGTAAGATGCCTC+AGG 0.530129 tig0023091:+25430 None:intergenic
TAAACCTTGTTGAAGCATGC+AGG 0.536699 tig0023091:-25859 Msa1404810:CDS
GTGAATTGGCGAGTGTGGGA+TGG 0.545645 tig0023091:+27509 None:intergenic
GAGCGGTGAATTGGCGAGTG+TGG 0.546264 tig0023091:+27504 None:intergenic
TGAATTGGCGAGTGTGGGAT+GGG 0.547232 tig0023091:+27510 None:intergenic
TAATATCTGAGATTCGGACT+TGG 0.548694 tig0023091:-25337 Msa1404810:three_prime_UTR
AACTTACAAATTGAAGAGAT+GGG 0.550774 tig0023091:+27177 None:intergenic
GGGGCAAGCAAATCCCAGCC+TGG 0.552735 tig0023091:+26672 None:intergenic
TACCTTTGCGAAGTTGAGGA+AGG 0.555784 tig0023091:+27454 None:intergenic
AGCGGTGAATTGGCGAGTGT+GGG 0.558367 tig0023091:+27505 None:intergenic
GTGTTACCTTTGCGAAGTTG+AGG 0.563021 tig0023091:+27450 None:intergenic
CTGGAGCTACTGGTAGTACT+GGG 0.565656 tig0023091:-27292 Msa1404810:CDS
TGAGGCATCTTACAAAGTTG+TGG 0.567286 tig0023091:-25428 Msa1404810:CDS
TATGGGGCAGCTACTCAATC+CGG 0.569169 tig0023091:-25780 Msa1404810:CDS
AGAAGTAGCTGTGGAATCGT+TGG 0.570182 tig0023091:-25458 Msa1404810:CDS
AATAGAAATGATAACATGAA+AGG 0.571321 tig0023091:+25175 None:intergenic
GGTTCTGAAGGAAGAGGGAG+CGG 0.573272 tig0023091:+27487 None:intergenic
GATTTGGTTCTGAAGGAAGA+GGG 0.577302 tig0023091:+27482 None:intergenic
ACCTTTGCGAAGTTGAGGAA+GGG 0.578834 tig0023091:+27455 None:intergenic
CCAGCCTGGCCGAAAGCCTG+TGG 0.586862 tig0023091:+26686 None:intergenic
ATAACAACATTTCCAGTAGG+AGG 0.590217 tig0023091:+25638 None:intergenic
ACGTTGAGAAAGATGTAAGC+CGG 0.592173 tig0023091:+25761 None:intergenic
TCCCTTCCTCAACTTCGCAA+AGG 0.592473 tig0023091:-27456 Msa1404810:intron
TAAGCTAGCTGAAGCAATTG+GGG 0.593302 tig0023091:-26733 Msa1404810:CDS
TGAAATCACTCAGCAAGCAG+TGG 0.616011 tig0023091:-27351 Msa1404810:CDS
CACGTTGGCAAGTGAATACG+TGG 0.616116 tig0023091:-27639 None:intergenic
GAGTGTGGGATGGGAAAGTG+TGG 0.617968 tig0023091:+27519 None:intergenic
GTTAAAGTTGATGTCACAGA+GGG 0.630073 tig0023091:-26762 Msa1404810:CDS
TCAAGTTGCAGAAGTAGCTG+TGG 0.632803 tig0023091:-25467 Msa1404810:CDS
ATTGAGTAGCTGCCCCATAG+CGG 0.638328 tig0023091:+25784 None:intergenic
AATTACACAATCATAAGACC+TGG 0.643894 tig0023091:-25677 Msa1404810:CDS
TAGTCAATGGAGCCGCTATG+GGG 0.647798 tig0023091:-25796 Msa1404810:CDS
TACACAATCATAAGACCTGG+AGG 0.652611 tig0023091:-25674 Msa1404810:CDS
TCCATAACAACATTTCCAGT+AGG 0.656385 tig0023091:+25635 None:intergenic
GGAATCGTTGGCTTATCCTG+AGG 0.676950 tig0023091:-25446 Msa1404810:CDS
TAGTACTGGGAAAAGAATCG+TGG 0.683015 tig0023091:-27279 Msa1404810:CDS
ACACAATCATAAGACCTGGA+GGG 0.693729 tig0023091:-25673 Msa1404810:CDS
AAATGTTGTTATGGAGCCAG+AGG 0.716025 tig0023091:-25627 Msa1404810:intron
TTCTATACTAACCTTCAACG+GGG 0.739473 tig0023091:+25145 None:intergenic
AAATTAACAAACCTTCCATG+GGG 0.740909 tig0023091:+26653 None:intergenic
GGTTAAAGTTGATGTCACAG+AGG 0.749642 tig0023091:-26763 Msa1404810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTATTTTTATGTTAGTA+TGG - tig0023091:26105-26124 Msa1404810:intron 10.0%
!!! TTTTTTTTCTTTTTGTTAGA+TGG - tig0023091:25299-25318 Msa1404810:three_prime_UTR 15.0%
!! TATAACAAAATATTGTATAC+TGG + tig0023091:26761-26780 None:intergenic 15.0%
!!! ACAATATTTTGTTATAACAA+AGG - tig0023091:26765-26784 Msa1404810:CDS 15.0%
!!! CAATATTTTGTTATAACAAA+GGG - tig0023091:26766-26785 Msa1404810:intron 15.0%
!!! ATAGTCCAATTTAAGATTAT+TGG - tig0023091:25554-25573 Msa1404810:intron 20.0%
!!! TAGTCCAATTTAAGATTATT+GGG - tig0023091:25555-25574 Msa1404810:intron 20.0%
!! TTTAAATCTAAACCAAGTTA+AGG + tig0023091:26169-26188 None:intergenic 20.0%
!!! TATAATCTGATGCTATTTAA+AGG + tig0023091:26652-26671 None:intergenic 20.0%
!!! CTCAATTTTTTATATGTTTG+TGG - tig0023091:27122-27141 Msa1404810:intron 20.0%
!!! AATTTAATTTTCTATGTGTC+AGG - tig0023091:27159-27178 Msa1404810:intron 20.0%
!! AATAGAAATGATAACATGAA+AGG + tig0023091:27508-27527 None:intergenic 20.0%
!! ATAGAATTTCAATACAAAAC+TGG - tig0023091:27552-27571 Msa1404810:CDS 20.0%
! AAAAAATGCTAGTATTAACG+CGG + tig0023091:25284-25303 None:intergenic 25.0%
!! TTTTCTTTTTGTTAGATGGA+AGG - tig0023091:25303-25322 Msa1404810:three_prime_UTR 25.0%
! AACTTACAAATTGAAGAGAT+GGG + tig0023091:25506-25525 None:intergenic 25.0%
! AAACTTACAAATTGAAGAGA+TGG + tig0023091:25507-25526 None:intergenic 25.0%
!! GGACTATTTTGCAATATAAT+GGG + tig0023091:25541-25560 None:intergenic 25.0%
!! TGGACTATTTTGCAATATAA+TGG + tig0023091:25542-25561 None:intergenic 25.0%
! TCAAATAAACCAATTCAAAC+AGG - tig0023091:25830-25849 Msa1404810:CDS 25.0%
! CAAATAAACCAATTCAAACA+GGG - tig0023091:25831-25850 Msa1404810:CDS 25.0%
! AAAATTAACAAACCTTCCAT+GGG + tig0023091:26031-26050 None:intergenic 25.0%
! AAAAATTAACAAACCTTCCA+TGG + tig0023091:26032-26051 None:intergenic 25.0%
! ATGGTAGTAGAATATTAGAA+TGG - tig0023091:26062-26081 Msa1404810:intron 25.0%
!!! AAAATGATCTCTAGAACTTA+CGG - tig0023091:26194-26213 Msa1404810:intron 25.0%
! ACTGTAACACTAATATAATC+AGG - tig0023091:26378-26397 Msa1404810:intron 25.0%
! TTTAGATTCTTCACTAGTAA+AGG - tig0023091:26582-26601 Msa1404810:intron 25.0%
! TTAGATTCTTCACTAGTAAA+GGG - tig0023091:26583-26602 Msa1404810:intron 25.0%
!!! ACAATTGTGTTTTGATTCAT+TGG + tig0023091:26706-26725 None:intergenic 25.0%
! ATGAATCAAAACACAATTGT+TGG - tig0023091:26706-26725 Msa1404810:CDS 25.0%
!!! ATAAGTTCCATTTTAGTCAA+TGG - tig0023091:26871-26890 Msa1404810:intron 25.0%
! GATATTTACTCACATTACTT+TGG + tig0023091:27477-27496 None:intergenic 25.0%
! AATTCTATACTAACCTTCAA+CGG + tig0023091:27540-27559 None:intergenic 25.0%
! GTTTTCTTGTAATCCAAACA+AGG + tig0023091:25080-25099 None:intergenic 30.0%
! AAGAAGAAAGTTTTTGTTGC+TGG - tig0023091:25369-25388 Msa1404810:CDS 30.0%
CAGACCCAATAATCTTAAAT+TGG + tig0023091:25562-25581 None:intergenic 30.0%
TATAAACAATTTGCCCTGTT+TGG - tig0023091:25582-25601 Msa1404810:intron 30.0%
! TTAAGTTGTTGATCCAAACA+GGG + tig0023091:25598-25617 None:intergenic 30.0%
! ATTAAGTTGTTGATCCAAAC+AGG + tig0023091:25599-25618 None:intergenic 30.0%
GAATGACATGATGTGTAATT+TGG - tig0023091:25870-25889 Msa1404810:CDS 30.0%
AAATTAACAAACCTTCCATG+GGG + tig0023091:26030-26049 None:intergenic 30.0%
TAGAACTTACGGTGATTATT+GGG - tig0023091:26205-26224 Msa1404810:intron 30.0%
GTACAAGTTCTGTAAAAGTT+TGG - tig0023091:26263-26282 Msa1404810:intron 30.0%
!!! GTGTTTGATACTTTTGAAGT+AGG - tig0023091:26285-26304 Msa1404810:intron 30.0%
AGTAGGCTACATTATATACA+TGG - tig0023091:26302-26321 Msa1404810:intron 30.0%
ACTCTATCTAATATCCAGAA+TGG + tig0023091:26468-26487 None:intergenic 30.0%
ACTAGTGAAGAATCTAAACT+TGG + tig0023091:26580-26599 None:intergenic 30.0%
ATCAAAACACAATTGTTGGT+TGG - tig0023091:26710-26729 Msa1404810:CDS 30.0%
! TCAAAACACAATTGTTGGTT+GGG - tig0023091:26711-26730 Msa1404810:CDS 30.0%
AACAAAGGGATATATTATGC+AGG - tig0023091:26780-26799 Msa1404810:intron 30.0%
!! ATTATGCAGGTTGACAATTT+TGG - tig0023091:26793-26812 Msa1404810:intron 30.0%
! TACATCTTTCTCAACGTTTT+CGG - tig0023091:26925-26944 Msa1404810:intron 30.0%
GAAAATCATATCAGGAAATC+TGG - tig0023091:26976-26995 Msa1404810:intron 30.0%
AATTACACAATCATAAGACC+TGG - tig0023091:27003-27022 Msa1404810:intron 30.0%
CCAAAAATCCAAGAAAAACA+AGG + tig0023091:27391-27410 None:intergenic 30.0%
!!! CCTTGTTTTTCTTGGATTTT+TGG - tig0023091:27388-27407 Msa1404810:intron 30.0%
ATTCTATACTAACCTTCAAC+GGG + tig0023091:27539-27558 None:intergenic 30.0%
TGACGTGTTAAACCTAAATA+TGG - tig0023091:27620-27639 Msa1404810:five_prime_UTR 30.0%
TGATATCACGATCCATATTT+AGG + tig0023091:27635-27654 None:intergenic 30.0%
! AGAAAACTCAGTTTTCACAG+TGG - tig0023091:25093-25112 Msa1404810:three_prime_UTR 35.0%
TACAAATTGAAGAGATGGGT+TGG + tig0023091:25502-25521 None:intergenic 35.0%
AAGCTATCATGTAGAGCTTA+TGG - tig0023091:25728-25747 Msa1404810:CDS 35.0%
ATATGTGTGAGTTCATATGC+AGG - tig0023091:25896-25915 Msa1404810:intron 35.0%
!! GTTAAAGTTGATGTCACAGA+GGG - tig0023091:25918-25937 Msa1404810:intron 35.0%
ATAAGCTAGCTGAAGCAATT+GGG - tig0023091:25946-25965 Msa1404810:intron 35.0%
CTAGAACTTACGGTGATTAT+TGG - tig0023091:26204-26223 Msa1404810:intron 35.0%
! TGGGTGCAACATATTTTCAT+TGG - tig0023091:26224-26243 Msa1404810:intron 35.0%
GGTTACTAAAACAAGAACCA+CGG + tig0023091:26441-26460 None:intergenic 35.0%
CTGGATATTAGATAGAGTTG+AGG - tig0023091:26470-26489 Msa1404810:intron 35.0%
TACAGGCAGAAAATCATATC+AGG - tig0023091:26968-26987 Msa1404810:intron 35.0%
ATAACAACATTTCCAGTAGG+AGG + tig0023091:27045-27064 None:intergenic 35.0%
TCCTACTGGAAATGTTGTTA+TGG - tig0023091:27044-27063 Msa1404810:intron 35.0%
TCCATAACAACATTTCCAGT+AGG + tig0023091:27048-27067 None:intergenic 35.0%
GAAATTTAAGCAAACACCTC+TGG + tig0023091:27072-27091 None:intergenic 35.0%
GGATATGGAACCTTCATAAA+GGG + tig0023091:27188-27207 None:intergenic 35.0%
TGGATATGGAACCTTCATAA+AGG + tig0023091:27189-27208 None:intergenic 35.0%
CAGATATTATCGCTGAACTA+TGG + tig0023091:27332-27351 None:intergenic 35.0%
! CAGCGATAATATCTGAGATT+CGG - tig0023091:27337-27356 Msa1404810:CDS 35.0%
! TAATATCTGAGATTCGGACT+TGG - tig0023091:27343-27362 Msa1404810:CDS 35.0%
TTGGTTGCAGATTAGCAAAT+CGG - tig0023091:27362-27381 Msa1404810:CDS 35.0%
!!! ATCGGTTTCCTTGTTTTTCT+TGG - tig0023091:27380-27399 Msa1404810:intron 35.0%
TTCTATACTAACCTTCAACG+GGG + tig0023091:27538-27557 None:intergenic 35.0%
TAGAAGAAAGCAAGAGATGA+TGG + tig0023091:27592-27611 None:intergenic 35.0%
TCACAGTGGAAGAGCTTAAA+TGG - tig0023091:25107-25126 Msa1404810:three_prime_UTR 40.0%
GTAGGGTTTCTTGCAATAAG+AGG + tig0023091:25138-25157 None:intergenic 40.0%
! ATGGGAAAGTGTGGAATGTA+GGG + tig0023091:25155-25174 None:intergenic 40.0%
!! GATTTGGTTCTGAAGGAAGA+GGG + tig0023091:25201-25220 None:intergenic 40.0%
!! AGATTTGGTTCTGAAGGAAG+AGG + tig0023091:25202-25221 None:intergenic 40.0%
! TAGTACTGGGAAAAGAATCG+TGG - tig0023091:25401-25420 Msa1404810:CDS 40.0%
GTGGAACAGTTACTTGCAAA+GGG - tig0023091:25420-25439 Msa1404810:CDS 40.0%
!!! AAGGGTTTTGCTGTTAAAGC+TGG - tig0023091:25438-25457 Msa1404810:CDS 40.0%
!!! AGGGTTTTGCTGTTAAAGCT+GGG - tig0023091:25439-25458 Msa1404810:CDS 40.0%
!! CAAGTACTTCTGAGACTCTA+TGG + tig0023091:25795-25814 None:intergenic 40.0%
!! GGTTAAAGTTGATGTCACAG+AGG - tig0023091:25917-25936 Msa1404810:intron 40.0%
GATAAGCTAGCTGAAGCAAT+TGG - tig0023091:25945-25964 Msa1404810:intron 40.0%
TAAGCTAGCTGAAGCAATTG+GGG - tig0023091:25947-25966 Msa1404810:intron 40.0%
! GTTAATGAGTGGCCTTAACT+TGG - tig0023091:26154-26173 Msa1404810:intron 40.0%
! TTGATTCCACATTTTCCCTC+CGG - tig0023091:26341-26360 Msa1404810:intron 40.0%
ACAGTTTAACACGCAGAAAC+CGG + tig0023091:26363-26382 None:intergenic 40.0%
TTTAGTAACCAACGCCATTC+TGG - tig0023091:26451-26470 Msa1404810:intron 40.0%
TCTAATATCCAGAATGGCGT+TGG + tig0023091:26462-26481 None:intergenic 40.0%
TAAACCTTGTTGAAGCATGC+AGG - tig0023091:26821-26840 Msa1404810:intron 40.0%
ACGTTGAGAAAGATGTAAGC+CGG + tig0023091:26922-26941 None:intergenic 40.0%
CACCTTAGTGGCAAAATTAC+AGG - tig0023091:26951-26970 Msa1404810:intron 40.0%
! TGCCTGTAATTTTGCCACTA+AGG + tig0023091:26956-26975 None:intergenic 40.0%
TACACAATCATAAGACCTGG+AGG - tig0023091:27006-27025 Msa1404810:intron 40.0%
ACACAATCATAAGACCTGGA+GGG - tig0023091:27007-27026 Msa1404810:intron 40.0%
TTGAAAAACGATCCTCCTAC+TGG - tig0023091:27030-27049 Msa1404810:intron 40.0%
AAATGTTGTTATGGAGCCAG+AGG - tig0023091:27053-27072 Msa1404810:intron 40.0%
TGCAACTTGATCTCTGGATA+TGG + tig0023091:27203-27222 None:intergenic 40.0%
TACTTCTGCAACTTGATCTC+TGG + tig0023091:27209-27228 None:intergenic 40.0%
ACAACTTTGTAAGATGCCTC+AGG + tig0023091:27253-27272 None:intergenic 40.0%
! TGAGGCATCTTACAAAGTTG+TGG - tig0023091:27252-27271 Msa1404810:CDS 40.0%
CTATGGAACCAAAGAGATCA+TGG + tig0023091:27315-27334 None:intergenic 40.0%
! GATAACATGAAAGGCATGCT+TGG + tig0023091:27499-27518 None:intergenic 40.0%
TATTCTATCTTCCCCGTTGA+AGG - tig0023091:27524-27543 Msa1404810:CDS 40.0%
! AGCAAGAGATGATGGCATAA+TGG + tig0023091:27584-27603 None:intergenic 40.0%
! GATGGGAAAGTGTGGAATGT+AGG + tig0023091:25156-25175 None:intergenic 45.0%
!! GGGAAGAGATTTGGTTCTGA+AGG + tig0023091:25208-25227 None:intergenic 45.0%
GTTGAGGAAGGGAAGAGATT+TGG + tig0023091:25217-25236 None:intergenic 45.0%
ACCTTTGCGAAGTTGAGGAA+GGG + tig0023091:25228-25247 None:intergenic 45.0%
TACCTTTGCGAAGTTGAGGA+AGG + tig0023091:25229-25248 None:intergenic 45.0%
GTGTTACCTTTGCGAAGTTG+AGG + tig0023091:25233-25252 None:intergenic 45.0%
TGAAATCACTCAGCAAGCAG+TGG - tig0023091:25329-25348 Msa1404810:three_prime_UTR 45.0%
! GTTTTTGTTGCTGGAGCTAC+TGG - tig0023091:25378-25397 Msa1404810:CDS 45.0%
CGTGGAACAGTTACTTGCAA+AGG - tig0023091:25419-25438 Msa1404810:CDS 45.0%
!!! GGGTTTTGCTGTTAAAGCTG+GGG - tig0023091:25440-25459 Msa1404810:CDS 45.0%
TAAAGCTGGGGTTAGAGACT+TGG - tig0023091:25452-25471 Msa1404810:CDS 45.0%
ACACACAGCCCTGTTTGAAT+TGG + tig0023091:25842-25861 None:intergenic 45.0%
! TAGTTTGTGCCACAGGCTTT+CGG - tig0023091:25985-26004 Msa1404810:intron 45.0%
!! GTTTTGATATCAGCTGCCAC+TGG - tig0023091:26132-26151 Msa1404810:intron 45.0%
TAAGGCCACTCATTAACCAG+TGG + tig0023091:26151-26170 None:intergenic 45.0%
TTTAACACGCAGAAACCGGA+GGG + tig0023091:26359-26378 None:intergenic 45.0%
GATAGCTTTCATTCATGCCG+TGG - tig0023091:26421-26440 Msa1404810:intron 45.0%
! ATTGTTGGTTGGGACTTCAG+TGG - tig0023091:26721-26740 Msa1404810:CDS 45.0%
!! CTTCAGTGGATTATTCTCGC+TGG - tig0023091:26735-26754 Msa1404810:CDS 45.0%
CTTTCCTGCATGCTTCAACA+AGG + tig0023091:26828-26847 None:intergenic 45.0%
! AGCGGCTCCATTGACTAAAA+TGG + tig0023091:26881-26900 None:intergenic 45.0%
TTTAGTCAATGGAGCCGCTA+TGG - tig0023091:26882-26901 Msa1404810:intron 45.0%
TTAGTCAATGGAGCCGCTAT+GGG - tig0023091:26883-26902 Msa1404810:intron 45.0%
TGTCAGGACACCCTTTATGA+AGG - tig0023091:27175-27194 Msa1404810:intron 45.0%
! TCAAGTTGCAGAAGTAGCTG+TGG - tig0023091:27213-27232 Msa1404810:CDS 45.0%
AGAAGTAGCTGTGGAATCGT+TGG - tig0023091:27222-27241 Msa1404810:CDS 45.0%
!!! TTAATTTTTTGTTTATATTA+TGG - tig0023091:26043-26062 Msa1404810:intron 5.0%
! CAGAGTTGTAGCGCCTTGTT+TGG - tig0023091:25064-25083 Msa1404810:three_prime_UTR 50.0%
TGAATTGGCGAGTGTGGGAT+GGG + tig0023091:25173-25192 None:intergenic 50.0%
TCCCTTCCTCAACTTCGCAA+AGG - tig0023091:25224-25243 Msa1404810:three_prime_UTR 50.0%
CTGGAGCTACTGGTAGTACT+GGG - tig0023091:25388-25407 Msa1404810:CDS 50.0%
! GAAGCAGTAGTTTGTGCCAC+AGG - tig0023091:25978-25997 Msa1404810:intron 50.0%
! AGCTGCCACTGGTTAATGAG+TGG - tig0023091:26143-26162 Msa1404810:intron 50.0%
CAGAAACCGGAGGGAAAATG+TGG + tig0023091:26350-26369 None:intergenic 50.0%
GTTTAACACGCAGAAACCGG+AGG + tig0023091:26360-26379 None:intergenic 50.0%
TAGTCAATGGAGCCGCTATG+GGG - tig0023091:26884-26903 Msa1404810:intron 50.0%
ATTGAGTAGCTGCCCCATAG+CGG + tig0023091:26899-26918 None:intergenic 50.0%
TATGGGGCAGCTACTCAATC+CGG - tig0023091:26900-26919 Msa1404810:intron 50.0%
! CGTTTTCGGACTCACCTTAG+TGG - tig0023091:26939-26958 Msa1404810:intron 50.0%
!! GGATCGTTTTTCAACCCTCC+AGG + tig0023091:27024-27043 None:intergenic 50.0%
!! GGAATCGTTGGCTTATCCTG+AGG - tig0023091:27234-27253 Msa1404810:CDS 50.0%
AGATCATGGTATGCGCGCTT+AGG + tig0023091:27301-27320 None:intergenic 50.0%
CGCGCATACCATGATCTCTT+TGG - tig0023091:27304-27323 Msa1404810:CDS 50.0%
GAGTGTGGGATGGGAAAGTG+TGG + tig0023091:25164-25183 None:intergenic 55.0%
GTGAATTGGCGAGTGTGGGA+TGG + tig0023091:25174-25193 None:intergenic 55.0%
AGCGGTGAATTGGCGAGTGT+GGG + tig0023091:25178-25197 None:intergenic 55.0%
AGGAAGAGGGAGCGGTGAAT+TGG + tig0023091:25188-25207 None:intergenic 55.0%
!! GGTTCTGAAGGAAGAGGGAG+CGG + tig0023091:25196-25215 None:intergenic 55.0%
GCTGGAGCTACTGGTAGTAC+TGG - tig0023091:25387-25406 Msa1404810:CDS 55.0%
! GGATTTGCTTGCCCCATGGA+AGG - tig0023091:26016-26035 Msa1404810:intron 55.0%
!! TATGCGCGCTTAGGAGCATC+AGG + tig0023091:27292-27311 None:intergenic 55.0%
GAGCGGTGAATTGGCGAGTG+TGG + tig0023091:25179-25198 None:intergenic 60.0%
! GCTGGGATTTGCTTGCCCCA+TGG - tig0023091:26012-26031 Msa1404810:intron 60.0%
TGTGCCACAGGCTTTCGGCC+AGG - tig0023091:25990-26009 Msa1404810:intron 65.0%
CACAGGCTTTCGGCCAGGCT+GGG - tig0023091:25995-26014 Msa1404810:intron 65.0%
GGGGCAAGCAAATCCCAGCC+TGG + tig0023091:26011-26030 None:intergenic 65.0%
CCAGCCTGGCCGAAAGCCTG+TGG + tig0023091:25997-26016 None:intergenic 70.0%
CCACAGGCTTTCGGCCAGGC+TGG - tig0023091:25994-26013 Msa1404810:intron 70.0%
Chromosome Type Strat End Strand Name
tig0023091 gene 25046 27656 25046 ID=Msa1404810;Name=Msa1404810
tig0023091 mRNA 25046 27656 25046 ID=Msa1404810-mRNA-1;Parent=Msa1404810;Name=Msa1404810-mRNA-1;_AED=0.03;_eAED=0.03;_QI=80|1|1|1|1|1|5|311|292
tig0023091 exon 25046 25521 25046 ID=Msa1404810-mRNA-1:exon:23816;Parent=Msa1404810-mRNA-1
tig0023091 exon 25628 25900 25628 ID=Msa1404810-mRNA-1:exon:23815;Parent=Msa1404810-mRNA-1
tig0023091 exon 26665 26784 26665 ID=Msa1404810-mRNA-1:exon:23814;Parent=Msa1404810-mRNA-1
tig0023091 exon 27184 27384 27184 ID=Msa1404810-mRNA-1:exon:23813;Parent=Msa1404810-mRNA-1
tig0023091 exon 27457 27656 27457 ID=Msa1404810-mRNA-1:exon:23812;Parent=Msa1404810-mRNA-1
tig0023091 five_prime_UTR 27577 27656 27577 ID=Msa1404810-mRNA-1:five_prime_utr;Parent=Msa1404810-mRNA-1
tig0023091 CDS 27457 27576 27457 ID=Msa1404810-mRNA-1:cds;Parent=Msa1404810-mRNA-1
tig0023091 CDS 27184 27384 27184 ID=Msa1404810-mRNA-1:cds;Parent=Msa1404810-mRNA-1
tig0023091 CDS 26665 26784 26665 ID=Msa1404810-mRNA-1:cds;Parent=Msa1404810-mRNA-1
tig0023091 CDS 25628 25900 25628 ID=Msa1404810-mRNA-1:cds;Parent=Msa1404810-mRNA-1
tig0023091 CDS 25357 25521 25357 ID=Msa1404810-mRNA-1:cds;Parent=Msa1404810-mRNA-1
tig0023091 three_prime_UTR 25046 25356 25046 ID=Msa1404810-mRNA-1:three_prime_utr;Parent=Msa1404810-mRNA-1
Gene Sequence

>Msa1404810

ATGGCTTTTCCTCTTATTGCAAGAAACCCTACATTCCACACTTTCCCATCCCACACTCGCCAATTCACCGCTCCCTCTTCCTTCAGAACCAAATCTCTTCCCTTCCTCAACTTCGCAAAGATGGAAGGAAGTGAAATCACTCAGCAAGCAGTGGATGATGATTTGAGTTTGAAGAAGAAAGTTTTTGTTGCTGGAGCTACTGGTAGTACTGGGAAAAGAATCGTGGAACAGTTACTTGCAAAGGGTTTTGCTGTTAAAGCTGGGGTTAGAGACTTGGACAAAGCAAAAACTTCACTTTCTGCCAACCCATCTCTTCAATTTGTTAAAGTTGATGTCACAGAGGGTTCTGATAAGCTAGCTGAAGCAATTGGGGATGATACAGAAGCAGTAGTTTGTGCCACAGGCTTTCGGCCAGGCTGGGATTTGCTTGCCCCATGGAAGGTTGACAATTTTGGCACTGTAAACCTTGTTGAAGCATGCAGGAAAGTCAACGTTAACAGATTCATTCTTATAAGTTCCATTTTAGTCAATGGAGCCGCTATGGGGCAGCTACTCAATCCGGCTTACATCTTTCTCAACGTTTTCGGACTCACCTTAGTGGCAAAATTACAGGCAGAAAATCATATCAGGAAATCTGGTATAAATTACACAATCATAAGACCTGGAGGGTTGAAAAACGATCCTCCTACTGGAAATGTTGTTATGGAGCCAGAGGACACCCTTTATGAAGGTTCCATATCCAGAGATCAAGTTGCAGAAGTAGCTGTGGAATCGTTGGCTTATCCTGAGGCATCTTACAAAGTTGTGGAGATAGTCGCTCGACCTGATGCTCCTAAGCGCGCATACCATGATCTCTTTGGTTCCATAGTTCAGCGATAA

Protein sequence

>Msa1404810

MAFPLIARNPTFHTFPSHTRQFTAPSSFRTKSLPFLNFAKMEGSEITQQAVDDDLSLKKKVFVAGATGSTGKRIVEQLLAKGFAVKAGVRDLDKAKTSLSANPSLQFVKVDVTEGSDKLAEAIGDDTEAVVCATGFRPGWDLLAPWKVDNFGTVNLVEACRKVNVNRFILISSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAENHIRKSGINYTIIRPGGLKNDPPTGNVVMEPEDTLYEGSISRDQVAEVAVESLAYPEASYKVVEIVARPDAPKRAYHDLFGSIVQR*