Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126460 | XP_013450274.1 | 92.284 | 324 | 22 | 2 | 1 | 324 | 1 | 321 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126460 | sp|Q9FG13|CXE15_ARATH | 58.589 | 326 | 127 | 4 | 1 | 319 | 1 | 325 | 7.48e-123 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126460 | A0A072U3J9 | 92.284 | 324 | 22 | 2 | 1 | 324 | 1 | 321 | 0.0 | 610 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024650 | Msa1126460 | 0.824208 | 9.139726e-54 | -8.615850e-47 |
| Msa0036550 | Msa1126460 | 0.844552 | 7.045471e-59 | -8.615850e-47 |
| Msa0043840 | Msa1126460 | 0.813946 | 1.978841e-51 | -8.615850e-47 |
| Msa0063540 | Msa1126460 | 0.809728 | 1.639075e-50 | -8.615850e-47 |
| Msa0084390 | Msa1126460 | 0.831032 | 2.100340e-55 | -8.615850e-47 |
| Msa0090500 | Msa1126460 | 0.827464 | 1.541808e-54 | -8.615850e-47 |
| Msa0655370 | Msa1126460 | 0.801976 | 6.982994e-49 | -8.615850e-47 |
| Msa0668220 | Msa1126460 | 0.813238 | 2.832117e-51 | -8.615850e-47 |
| Msa0716600 | Msa1126460 | 0.816176 | 6.330441e-52 | -8.615850e-47 |
| Msa0718770 | Msa1126460 | 0.809077 | 2.261634e-50 | -8.615850e-47 |
| Msa0732970 | Msa1126460 | 0.805324 | 1.410123e-49 | -8.615850e-47 |
| Msa0757120 | Msa1126460 | 0.800072 | 1.710587e-48 | -8.615850e-47 |
| Msa0758000 | Msa1126460 | 0.805171 | 1.518113e-49 | -8.615850e-47 |
| Msa0758150 | Msa1126460 | 0.832009 | 1.207122e-55 | -8.615850e-47 |
| Msa0803560 | Msa1126460 | 0.803508 | 3.372155e-49 | -8.615850e-47 |
| Msa0817100 | Msa1126460 | 0.814935 | 1.195721e-51 | -8.615850e-47 |
| Msa0838210 | Msa1126460 | 0.801543 | 8.569119e-49 | -8.615850e-47 |
| Msa0125600 | Msa1126460 | 0.821147 | 4.712731e-53 | -8.615850e-47 |
| Msa0130710 | Msa1126460 | 0.849663 | 2.797988e-60 | -8.615850e-47 |
| Msa0137970 | Msa1126460 | 0.827521 | 1.494020e-54 | -8.615850e-47 |
| Msa0163690 | Msa1126460 | 0.815454 | 9.171175e-52 | -8.615850e-47 |
| Msa0166180 | Msa1126460 | 0.800205 | 1.607413e-48 | -8.615850e-47 |
| Msa0176600 | Msa1126460 | 0.836676 | 8.139192e-57 | -8.615850e-47 |
| Msa0388690 | Msa1126460 | 0.837445 | 5.175744e-57 | -8.615850e-47 |
| Msa0430040 | Msa1126460 | -0.809400 | 1.927955e-50 | -8.615850e-47 |
| Msa0987550 | Msa1126460 | 0.805379 | 1.373228e-49 | -8.615850e-47 |
| Msa1024480 | Msa1126460 | 0.802671 | 5.022218e-49 | -8.615850e-47 |
| Msa1036020 | Msa1126460 | 0.823172 | 1.598160e-53 | -8.615850e-47 |
| Msa1076280 | Msa1126460 | 0.821326 | 4.284112e-53 | -8.615850e-47 |
| Msa1090990 | Msa1126460 | 0.803935 | 2.748762e-49 | -8.615850e-47 |
| Msa0269240 | Msa1126460 | 0.808325 | 3.273734e-50 | -8.615850e-47 |
| Msa0319220 | Msa1126460 | 0.805181 | 1.511131e-49 | -8.615850e-47 |
| Msa0349910 | Msa1126460 | 0.804739 | 1.869152e-49 | -8.615850e-47 |
| Msa1108610 | Msa1126460 | 0.805422 | 1.345131e-49 | -8.615850e-47 |
| Msa1126460 | Msa1126530 | 0.916238 | 2.265998e-85 | -8.615850e-47 |
| Msa1126460 | Msa1156670 | 0.803039 | 4.216004e-49 | -8.615850e-47 |
| Msa1126460 | Msa1160540 | 0.805517 | 1.285123e-49 | -8.615850e-47 |
| Msa1126460 | Msa1165860 | 0.807737 | 4.367432e-50 | -8.615850e-47 |
| Msa1126460 | Msa1179190 | 0.811667 | 6.242951e-51 | -8.615850e-47 |
| Msa1126460 | Msa1223960 | 0.804527 | 2.069649e-49 | -8.615850e-47 |
| Msa1126460 | Msa1223990 | 0.817968 | 2.503431e-52 | -8.615850e-47 |
| Msa1126460 | Msa1263110 | 0.818522 | 1.876398e-52 | -8.615850e-47 |
| Msa1126460 | Msa1263120 | 0.818016 | 2.442475e-52 | -8.615850e-47 |
| Msa1126460 | Msa1335500 | 0.805970 | 1.031887e-49 | -8.615850e-47 |
| Msa1126460 | Msa1336100 | 0.819142 | 1.356299e-52 | -8.615850e-47 |
| Msa1126460 | Msa1357840 | 0.806824 | 6.819965e-50 | -8.615850e-47 |
| Msa1126460 | Msa1378950 | 0.825561 | 4.383500e-54 | -8.615850e-47 |
| Msa1126460 | Msa1387480 | 0.800636 | 1.313132e-48 | -8.615850e-47 |
| Msa1126460 | Msa1395720 | 0.842697 | 2.207893e-58 | -8.615850e-47 |
| Msa1126460 | Msa1441300 | 0.824296 | 8.716768e-54 | -8.615850e-47 |
| Msa1126460 | Msa1441450 | 0.807734 | 4.374062e-50 | -8.615850e-47 |
| Msa1126460 | Msa1445780 | 0.821594 | 3.715160e-53 | -8.615850e-47 |
| Msa1126460 | Msa1451660 | 0.815635 | 8.355813e-52 | -8.615850e-47 |
| Msa1126460 | Msa1458270 | 0.823126 | 1.638441e-53 | -8.615850e-47 |
| Msa0487100 | Msa1126460 | 0.809804 | 1.578396e-50 | -8.615850e-47 |
| Msa0540640 | Msa1126460 | 0.802681 | 4.998477e-49 | -8.615850e-47 |
| Msa0913500 | Msa1126460 | 0.809346 | 1.979843e-50 | -8.615850e-47 |
| Msa0932930 | Msa1126460 | 0.819502 | 1.123177e-52 | -8.615850e-47 |
| Msa0970820 | Msa1126460 | 0.802377 | 5.775326e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126460 | MtrunA17_Chr7g0268091 | 92.284 | 324 | 22 | 2 | 1 | 324 | 1 | 321 | 0.0 | 610 |
| Msa1126460 | MtrunA17_Chr4g0025291 | 57.006 | 314 | 131 | 4 | 7 | 319 | 5 | 315 | 5.64e-127 | 365 |
| Msa1126460 | MtrunA17_Chr7g0214851 | 34.940 | 332 | 186 | 11 | 13 | 321 | 27 | 351 | 3.84e-60 | 196 |
| Msa1126460 | MtrunA17_Chr1g0210121 | 35.952 | 331 | 180 | 11 | 7 | 319 | 26 | 342 | 1.87e-58 | 192 |
| Msa1126460 | MtrunA17_Chr3g0081521 | 34.295 | 312 | 181 | 8 | 7 | 299 | 7 | 313 | 2.01e-55 | 183 |
| Msa1126460 | MtrunA17_Chr1g0204211 | 37.671 | 292 | 164 | 8 | 20 | 303 | 43 | 324 | 3.12e-50 | 170 |
| Msa1126460 | MtrunA17_Chr8g0351201 | 34.877 | 324 | 198 | 10 | 3 | 319 | 7 | 324 | 1.12e-48 | 166 |
| Msa1126460 | MtrunA17_Chr7g0235741 | 34.591 | 318 | 192 | 8 | 7 | 319 | 40 | 346 | 1.17e-48 | 166 |
| Msa1126460 | MtrunA17_Chr1g0149271 | 34.532 | 278 | 171 | 6 | 7 | 283 | 3 | 270 | 1.38e-47 | 162 |
| Msa1126460 | MtrunA17_Chr3g0133701 | 31.746 | 315 | 192 | 8 | 14 | 319 | 14 | 314 | 2.33e-47 | 162 |
| Msa1126460 | MtrunA17_Chr6g0474411 | 33.548 | 310 | 187 | 10 | 19 | 319 | 27 | 326 | 5.16e-46 | 159 |
| Msa1126460 | MtrunA17_Chr1g0204201 | 33.956 | 321 | 186 | 10 | 15 | 321 | 19 | 327 | 1.69e-45 | 157 |
| Msa1126460 | MtrunA17_Chr8g0351211 | 34.568 | 324 | 183 | 11 | 15 | 322 | 9 | 319 | 1.99e-45 | 157 |
| Msa1126460 | MtrunA17_Chr4g0045181 | 32.704 | 318 | 201 | 7 | 7 | 319 | 8 | 317 | 6.04e-45 | 155 |
| Msa1126460 | MtrunA17_Chr6g0474491 | 34.925 | 335 | 185 | 14 | 3 | 319 | 5 | 324 | 2.37e-44 | 154 |
| Msa1126460 | MtrunA17_Chr6g0474471 | 36.364 | 297 | 153 | 11 | 41 | 319 | 47 | 325 | 3.04e-43 | 151 |
| Msa1126460 | MtrunA17_Chr4g0045131 | 30.696 | 316 | 207 | 7 | 7 | 319 | 48 | 354 | 1.52e-42 | 150 |
| Msa1126460 | MtrunA17_Chr1g0205871 | 32.808 | 317 | 195 | 12 | 14 | 320 | 15 | 323 | 1.74e-42 | 149 |
| Msa1126460 | MtrunA17_Chr6g0474541 | 38.961 | 231 | 131 | 6 | 15 | 242 | 48 | 271 | 4.05e-42 | 149 |
| Msa1126460 | MtrunA17_Chr3g0095711 | 31.077 | 325 | 207 | 9 | 7 | 321 | 53 | 370 | 6.60e-42 | 149 |
| Msa1126460 | MtrunA17_Chr5g0394251 | 29.538 | 325 | 214 | 9 | 7 | 321 | 13 | 332 | 1.16e-41 | 147 |
| Msa1126460 | MtrunA17_Chr6g0477271 | 31.930 | 285 | 181 | 5 | 39 | 321 | 80 | 353 | 3.11e-41 | 147 |
| Msa1126460 | MtrunA17_Chr8g0351171 | 31.661 | 319 | 193 | 12 | 15 | 320 | 12 | 318 | 3.88e-41 | 145 |
| Msa1126460 | MtrunA17_Chr6g0477231 | 30.667 | 300 | 180 | 6 | 39 | 323 | 53 | 339 | 4.98e-41 | 146 |
| Msa1126460 | MtrunA17_Chr1g0196311 | 36.957 | 230 | 131 | 3 | 71 | 299 | 121 | 337 | 7.74e-41 | 145 |
| Msa1126460 | MtrunA17_Chr6g0477161 | 31.849 | 292 | 175 | 6 | 39 | 319 | 56 | 334 | 2.29e-40 | 149 |
| Msa1126460 | MtrunA17_Chr6g0477161 | 30.000 | 300 | 185 | 6 | 36 | 323 | 401 | 687 | 2.76e-38 | 144 |
| Msa1126460 | MtrunA17_Chr1g0191301 | 32.404 | 287 | 165 | 7 | 45 | 315 | 67 | 340 | 2.29e-40 | 144 |
| Msa1126460 | MtrunA17_Chr6g0474631 | 34.164 | 281 | 159 | 9 | 20 | 286 | 26 | 294 | 2.46e-40 | 144 |
| Msa1126460 | MtrunA17_Chr5g0394241 | 30.422 | 332 | 216 | 9 | 1 | 321 | 1 | 328 | 1.23e-39 | 142 |
| Msa1126460 | MtrunA17_Chr8g0353951 | 30.530 | 321 | 211 | 8 | 7 | 321 | 16 | 330 | 1.33e-39 | 142 |
| Msa1126460 | MtrunA17_Chr6g0477251 | 31.419 | 296 | 179 | 6 | 39 | 323 | 609 | 891 | 2.66e-39 | 147 |
| Msa1126460 | MtrunA17_Chr6g0477251 | 31.164 | 292 | 177 | 6 | 39 | 319 | 55 | 333 | 2.82e-39 | 147 |
| Msa1126460 | MtrunA17_Chr7g0259161 | 36.638 | 232 | 134 | 5 | 71 | 299 | 106 | 327 | 3.05e-39 | 141 |
| Msa1126460 | MtrunA17_Chr4g0045121 | 32.000 | 275 | 177 | 6 | 10 | 283 | 14 | 279 | 8.91e-38 | 137 |
| Msa1126460 | MtrunA17_Chr7g0233871 | 30.189 | 318 | 215 | 6 | 6 | 319 | 11 | 325 | 9.66e-35 | 129 |
| Msa1126460 | MtrunA17_Chr5g0394211 | 29.268 | 328 | 207 | 11 | 7 | 320 | 43 | 359 | 1.59e-33 | 126 |
| Msa1126460 | MtrunA17_Chr4g0045191 | 28.155 | 309 | 188 | 9 | 18 | 322 | 29 | 307 | 3.66e-31 | 119 |
| Msa1126460 | MtrunA17_Chr1g0205781 | 29.560 | 318 | 214 | 7 | 6 | 319 | 11 | 322 | 7.01e-30 | 115 |
| Msa1126460 | MtrunA17_Chr6g0458881 | 31.502 | 273 | 144 | 9 | 65 | 302 | 154 | 418 | 1.26e-29 | 117 |
| Msa1126460 | MtrunA17_Chr1g0205791 | 30.368 | 326 | 205 | 10 | 6 | 323 | 9 | 320 | 2.54e-29 | 115 |
| Msa1126460 | MtrunA17_Chr7g0228721 | 31.250 | 288 | 148 | 9 | 57 | 302 | 152 | 431 | 6.83e-29 | 115 |
| Msa1126460 | MtrunA17_Chr6g0477241 | 31.156 | 199 | 114 | 5 | 39 | 226 | 66 | 252 | 1.10e-26 | 107 |
| Msa1126460 | MtrunA17_Chr6g0474611 | 30.216 | 139 | 87 | 4 | 157 | 286 | 3 | 140 | 6.08e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126460 | AT5G06570.3 | 58.589 | 326 | 127 | 4 | 1 | 319 | 16 | 340 | 6.15e-124 | 359 |
| Msa1126460 | AT5G06570.4 | 58.589 | 326 | 127 | 4 | 1 | 319 | 16 | 340 | 6.15e-124 | 359 |
| Msa1126460 | AT5G06570.1 | 58.589 | 326 | 127 | 4 | 1 | 319 | 1 | 325 | 7.61e-124 | 358 |
| Msa1126460 | AT5G06570.2 | 58.589 | 326 | 127 | 4 | 1 | 319 | 1 | 325 | 7.61e-124 | 358 |
| Msa1126460 | AT5G16080.1 | 36.943 | 314 | 181 | 8 | 7 | 313 | 28 | 331 | 3.12e-59 | 194 |
| Msa1126460 | AT5G62180.1 | 36.624 | 314 | 178 | 10 | 3 | 302 | 2 | 308 | 4.57e-49 | 167 |
| Msa1126460 | AT2G45600.1 | 35.093 | 322 | 180 | 12 | 15 | 324 | 16 | 320 | 1.01e-47 | 163 |
| Msa1126460 | AT1G68620.1 | 34.680 | 297 | 175 | 7 | 7 | 298 | 23 | 305 | 4.14e-47 | 162 |
| Msa1126460 | AT2G45610.1 | 36.694 | 248 | 150 | 5 | 44 | 287 | 49 | 293 | 2.57e-45 | 157 |
| Msa1126460 | AT5G23530.1 | 33.993 | 303 | 177 | 9 | 20 | 314 | 35 | 322 | 2.13e-43 | 152 |
| Msa1126460 | AT5G27320.1 | 34.672 | 274 | 152 | 6 | 39 | 299 | 61 | 320 | 4.91e-42 | 149 |
| Msa1126460 | AT1G47480.1 | 28.213 | 319 | 210 | 8 | 10 | 324 | 11 | 314 | 1.03e-40 | 145 |
| Msa1126460 | AT1G19190.1 | 30.063 | 316 | 203 | 9 | 15 | 323 | 13 | 317 | 8.71e-40 | 142 |
| Msa1126460 | AT3G05120.1 | 32.714 | 269 | 154 | 5 | 45 | 299 | 67 | 322 | 1.08e-39 | 143 |
| Msa1126460 | AT3G63010.1 | 32.707 | 266 | 151 | 4 | 49 | 299 | 70 | 322 | 2.52e-39 | 142 |
| Msa1126460 | AT3G48690.1 | 29.688 | 320 | 214 | 9 | 7 | 319 | 5 | 320 | 1.08e-34 | 129 |
| Msa1126460 | AT3G48700.1 | 28.000 | 325 | 218 | 8 | 7 | 319 | 5 | 325 | 7.72e-34 | 127 |
| Msa1126460 | AT1G49640.1 | 28.000 | 325 | 207 | 12 | 7 | 320 | 6 | 314 | 2.65e-33 | 125 |
| Msa1126460 | AT2G03550.1 | 28.754 | 313 | 202 | 10 | 14 | 319 | 12 | 310 | 1.03e-31 | 120 |
| Msa1126460 | AT1G49650.1 | 32.000 | 275 | 174 | 8 | 14 | 283 | 68 | 334 | 2.43e-31 | 121 |
| Msa1126460 | AT5G14310.1 | 29.861 | 288 | 159 | 7 | 59 | 309 | 140 | 421 | 4.68e-29 | 116 |
| Msa1126460 | AT1G49660.1 | 28.674 | 279 | 187 | 8 | 7 | 280 | 5 | 276 | 9.48e-29 | 113 |
| Msa1126460 | AT3G27320.2 | 30.986 | 284 | 151 | 8 | 57 | 302 | 120 | 396 | 3.81e-28 | 113 |
| Msa1126460 | AT3G27320.1 | 30.986 | 284 | 151 | 8 | 57 | 302 | 152 | 428 | 6.51e-28 | 113 |
Find 103 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAGCATGAACTGTTTA+AGG | 0.092720 | 7_3:-78010223 | None:intergenic |
| TAAAGCAGTTTGTAGGATTA+AGG | 0.197493 | 7_3:+78010339 | Msa1126460:three_prime_UTR |
| TCATACAACAATTGTGAATA+TGG | 0.214269 | 7_3:-78007550 | None:intergenic |
| AATGAAGCTTGATCCCATTT+TGG | 0.221227 | 7_3:+78010037 | Msa1126460:CDS |
| ACATAACCTCTTATTCTTAC+AGG | 0.242199 | 7_3:-78007836 | None:intergenic |
| CTTTGACAGTGTGTTTATTA+TGG | 0.244190 | 7_3:+78007742 | Msa1126460:CDS |
| GCCACCAACTATCACCAAAA+TGG | 0.244462 | 7_3:-78010051 | None:intergenic |
| GAAGTTGTTAGAACGGTAAA+TGG | 0.252525 | 7_3:-78007345 | None:intergenic |
| AGCTTCATTTGTTCAAGATT+TGG | 0.259469 | 7_3:-78010023 | None:intergenic |
| TAATTTACTTGTGATAATAT+TGG | 0.272921 | 7_3:-78010261 | None:intergenic |
| CCAGTGATTGTGTTCCTTCA+TGG | 0.273519 | 7_3:+78007494 | Msa1126460:CDS |
| TTTATTATGGGTGACTCTTC+TGG | 0.275927 | 7_3:+78007755 | Msa1126460:CDS |
| TCAAGATTCAATGTTTGTTC+TGG | 0.294664 | 7_3:-78007914 | None:intergenic |
| TGGAGGACCTTCCTCAGATT+TGG | 0.297434 | 7_3:-78007894 | None:intergenic |
| CCTATATTAAAGCAGTTTGT+AGG | 0.313778 | 7_3:+78010332 | Msa1126460:three_prime_UTR |
| CACCAGCTCGCGGTTCGGTT+TGG | 0.326565 | 7_3:+78007791 | Msa1126460:CDS |
| GATAAATAAGTCATTGTTAT+CGG | 0.332075 | 7_3:+78010363 | Msa1126460:three_prime_UTR |
| TTCTTGTTGTTGATGTTGTT+TGG | 0.341111 | 7_3:-78007461 | None:intergenic |
| CATCCATTGGCGAATCCATT+TGG | 0.361125 | 7_3:+78009990 | Msa1126460:CDS |
| GGTGAGGTGGCTTCAAAGGC+AGG | 0.367234 | 7_3:+78007670 | Msa1126460:CDS |
| TTTGACAGTGTGTTTATTAT+GGG | 0.368917 | 7_3:+78007743 | Msa1126460:CDS |
| CCTACAAACTGCTTTAATAT+AGG | 0.374093 | 7_3:-78010332 | None:intergenic |
| ACTGAGTTGTCTTCTATTGT+GGG | 0.382901 | 7_3:-78007380 | None:intergenic |
| TTTGTTTCGGCTCCCGTACA+TGG | 0.389708 | 7_3:+78007525 | Msa1126460:CDS |
| GCAATGAATTGCTTAAAGAT+AGG | 0.394694 | 7_3:+78010072 | Msa1126460:CDS |
| CAGGGGTTGAGCCATGGTTA+TGG | 0.420795 | 7_3:+78007689 | Msa1126460:CDS |
| CATACAACAATTGTGAATAT+GGG | 0.426547 | 7_3:-78007549 | None:intergenic |
| ATTGAACCTGTAAGAATAAG+AGG | 0.436336 | 7_3:+78007830 | Msa1126460:CDS |
| AAGTCATTGTTATCGGTTTG+TGG | 0.438463 | 7_3:+78010370 | Msa1126460:three_prime_UTR |
| CAAATGCAAATTCGAAATGA+TGG | 0.438607 | 7_3:-78007215 | None:intergenic |
| TACTGAGTTGTCTTCTATTG+TGG | 0.438893 | 7_3:-78007381 | None:intergenic |
| CATTAAATACATTGAGTTTG+AGG | 0.440998 | 7_3:+78010136 | Msa1126460:CDS |
| GTGAATATGGGGCCATGTAC+GGG | 0.442379 | 7_3:-78007537 | None:intergenic |
| GTCGAAAAGACAGTCTTTGA+AGG | 0.443728 | 7_3:-78007405 | None:intergenic |
| GCAACAAGGTTGAAAGGAAT+AGG | 0.450448 | 7_3:+78010107 | Msa1126460:CDS |
| CCACCAACTATCACCAAAAT+GGG | 0.451123 | 7_3:-78010050 | None:intergenic |
| TGTGAATATGGGGCCATGTA+CGG | 0.460692 | 7_3:-78007538 | None:intergenic |
| TTGCTCACCAGCTCGCGGTT+CGG | 0.462960 | 7_3:+78007786 | Msa1126460:CDS |
| ATTAAATACATTGAGTTTGA+GGG | 0.463910 | 7_3:+78010137 | Msa1126460:CDS |
| GAAATTTGAAGTTGTTAGAA+CGG | 0.477889 | 7_3:-78007352 | None:intergenic |
| ATATTCAGAAACTGCAAAAG+AGG | 0.479398 | 7_3:+78010190 | Msa1126460:CDS |
| TCTGGTGCAAGCCGGTAGTC+CGG | 0.481494 | 7_3:-78007608 | None:intergenic |
| TTTGGACTTCCATGTCCAAA+TGG | 0.481522 | 7_3:-78010005 | None:intergenic |
| GCTCGCGGTTCGGTTTGGAT+TGG | 0.481933 | 7_3:+78007796 | Msa1126460:CDS |
| AACCGTCGCTATAGAGTTGA+AGG | 0.495505 | 7_3:-78007322 | None:intergenic |
| GCAGCTGGAAGACGGTGCTC+TGG | 0.503385 | 7_3:-78007626 | None:intergenic |
| AGATTCAATGTTTGTTCTGG+AGG | 0.507064 | 7_3:-78007911 | None:intergenic |
| TGATCTCTACTCTCTCCAAC+AGG | 0.510331 | 7_3:-78009969 | None:intergenic |
| AAGCGGTGAGGTGGCTTCAA+AGG | 0.511531 | 7_3:+78007666 | Msa1126460:CDS |
| TGGTGGTTGCACCGGACTAC+CGG | 0.511979 | 7_3:+78007597 | Msa1126460:CDS |
| TCAAGCACTGGTGGTTGCAC+CGG | 0.513886 | 7_3:+78007589 | Msa1126460:CDS |
| GAGTTTGAGGGGTGTGAACA+TGG | 0.521959 | 7_3:+78010149 | Msa1126460:CDS |
| CCATGAAGGAACACAATCAC+TGG | 0.524194 | 7_3:-78007494 | None:intergenic |
| GTGAGGTGGCTTCAAAGGCA+GGG | 0.524997 | 7_3:+78007671 | Msa1126460:CDS |
| AACTATGCAACAAGGTTGAA+AGG | 0.532635 | 7_3:+78010101 | Msa1126460:CDS |
| ACAGCATCATCAATTGCAGC+TGG | 0.532717 | 7_3:-78007641 | None:intergenic |
| ATTGTGTTCCTTCATGGTGG+AGG | 0.533059 | 7_3:+78007500 | Msa1126460:CDS |
| CAATGAATTGCTTAAAGATA+GGG | 0.536108 | 7_3:+78010073 | Msa1126460:CDS |
| AATCCTCTACTACGTGGGGA+AGG | 0.539422 | 7_3:-78007289 | None:intergenic |
| GACGGTGCTCTGGTGCAAGC+CGG | 0.547439 | 7_3:-78007616 | None:intergenic |
| TTCCTTCAACTCTATAGCGA+CGG | 0.551743 | 7_3:+78007320 | Msa1126460:CDS |
| CAAATTCGAAATGATGGATG+AGG | 0.552450 | 7_3:-78007209 | None:intergenic |
| CGCTGGACTTCAAGCACTGG+TGG | 0.553404 | 7_3:+78007580 | Msa1126460:CDS |
| TTCCCTTCCCCACGTAGTAG+AGG | 0.554411 | 7_3:+78007286 | Msa1126460:CDS |
| TGAATCTTGACTTACTAGAC+AGG | 0.555572 | 7_3:+78007927 | Msa1126460:CDS |
| CAAAGGCAGGGGTTGAGCCA+TGG | 0.559944 | 7_3:+78007683 | Msa1126460:CDS |
| ATCCAAACCGAACCGCGAGC+TGG | 0.561333 | 7_3:-78007793 | None:intergenic |
| TGTCCAAATGGATTCGCCAA+TGG | 0.564040 | 7_3:-78009993 | None:intergenic |
| TGAGGTGGCTTCAAAGGCAG+GGG | 0.564606 | 7_3:+78007672 | Msa1126460:CDS |
| CATCAATTGCAGCTGGAAGA+CGG | 0.570423 | 7_3:-78007634 | None:intergenic |
| AACAAAAGCCTCCACCATGA+AGG | 0.573822 | 7_3:-78007508 | None:intergenic |
| AGTTTGAGGGGTGTGAACAT+GGG | 0.575990 | 7_3:+78010150 | Msa1126460:CDS |
| TTATGGGTGACTCTTCTGGC+GGG | 0.581327 | 7_3:+78007759 | Msa1126460:CDS |
| TGATGTTGTTTGGTTTGTAG+AGG | 0.582952 | 7_3:-78007451 | None:intergenic |
| CCACGTAGTAGAGGATTGCA+TGG | 0.583298 | 7_3:+78007295 | Msa1126460:CDS |
| ATCCTCTACTACGTGGGGAA+GGG | 0.583978 | 7_3:-78007288 | None:intergenic |
| AGCCGCTGGACTTCAAGCAC+TGG | 0.585205 | 7_3:+78007577 | Msa1126460:CDS |
| ACTGTCAAAGTCAACATCAC+TGG | 0.588550 | 7_3:-78007729 | None:intergenic |
| CATGCAATCCTCTACTACGT+GGG | 0.592592 | 7_3:-78007294 | None:intergenic |
| TGTTGTATGAGTCTAGCCGC+TGG | 0.594495 | 7_3:+78007563 | Msa1126460:CDS |
| TTAAATACATTGAGTTTGAG+GGG | 0.597234 | 7_3:+78010138 | Msa1126460:CDS |
| ATTATGGGTGACTCTTCTGG+CGG | 0.606698 | 7_3:+78007758 | Msa1126460:CDS |
| TCGGTTTGGATTGGATCGAA+CGG | 0.608973 | 7_3:+78007805 | Msa1126460:CDS |
| TGGAGGTTGTCAATGCCTGT+TGG | 0.608993 | 7_3:+78009954 | Msa1126460:CDS |
| TTGGCGAATCCATTTGGACA+TGG | 0.609677 | 7_3:+78009996 | Msa1126460:CDS |
| ATACAACAATTGTGAATATG+GGG | 0.617658 | 7_3:-78007548 | None:intergenic |
| ATGCTGTCGAAGCGGTGAGG+TGG | 0.618657 | 7_3:+78007657 | Msa1126460:CDS |
| AGAGAGTAGAGATCATCCAT+TGG | 0.627428 | 7_3:+78009977 | Msa1126460:CDS |
| CACCAGTGCTTGAAGTCCAG+CGG | 0.635664 | 7_3:-78007579 | None:intergenic |
| ACATCACTGGTCGTCAACCA+TGG | 0.636649 | 7_3:-78007716 | None:intergenic |
| GCCATGGTTATGGAGAGCCA+TGG | 0.645828 | 7_3:+78007699 | Msa1126460:CDS |
| GTGATTGTGTTCCTTCATGG+TGG | 0.647455 | 7_3:+78007497 | Msa1126460:CDS |
| ATGCAATCCTCTACTACGTG+GGG | 0.648507 | 7_3:-78007293 | None:intergenic |
| CCATGCAATCCTCTACTACG+TGG | 0.649967 | 7_3:-78007295 | None:intergenic |
| CACGTAGTAGAGGATTGCAT+GGG | 0.651059 | 7_3:+78007296 | Msa1126460:CDS |
| GGAAGTACGGACCAAATCTG+AGG | 0.652219 | 7_3:+78007883 | Msa1126460:CDS |
| GTACGGACCAAATCTGAGGA+AGG | 0.656456 | 7_3:+78007887 | Msa1126460:CDS |
| GAATATTGCTCACCAGCTCG+CGG | 0.656723 | 7_3:+78007781 | Msa1126460:CDS |
| ATTTGCAAATCAAACACACA+AGG | 0.661356 | 7_3:+78007233 | Msa1126460:five_prime_UTR |
| ACCATGGCTCTCCATAACCA+TGG | 0.673171 | 7_3:-78007700 | None:intergenic |
| GGGCTGCAAACTATGCAACA+AGG | 0.691008 | 7_3:+78010093 | Msa1126460:CDS |
| AATTGATGATGCTGTCGAAG+CGG | 0.713811 | 7_3:+78007649 | Msa1126460:CDS |
| ATGATGCTGTCGAAGCGGTG+AGG | 0.739300 | 7_3:+78007654 | Msa1126460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATATATATATATATAA+TGG | + | chr7_3:78007262-78007281 | Msa1126460:exon | 0.0% |
| !! | ATAATATATATATATATAAT+GGG | + | chr7_3:78007263-78007282 | Msa1126460:exon | 0.0% |
| !! | ATTATTATTATTATTATAAA+GGG | - | chr7_3:78009693-78009712 | None:intergenic | 0.0% |
| !! | TATTATTATTATTATTATAA+AGG | - | chr7_3:78009694-78009713 | None:intergenic | 0.0% |
| !! | ATTATTATTATTATTATAAA+GGG | - | chr7_3:78009693-78009712 | None:intergenic | 0.0% |
| !! | TATTATTATTATTATTATAA+AGG | - | chr7_3:78009694-78009713 | None:intergenic | 0.0% |
| !! | TATATATATATATATATCAG+AGG | - | chr7_3:78008274-78008293 | None:intergenic | 10.0% |
| !! | AAAATATTATTATCTCTAAT+CGG | + | chr7_3:78009301-78009320 | Msa1126460:intron | 10.0% |
| !! | AAAAAAATATTAAAATAGCA+AGG | + | chr7_3:78009595-78009614 | Msa1126460:intron | 10.0% |
| !! | AAAAAATATTAAAATAGCAA+GGG | + | chr7_3:78009596-78009615 | Msa1126460:intron | 10.0% |
| !!! | ATATTTTGTTCTAAAATGTT+TGG | + | chr7_3:78008087-78008106 | Msa1126460:intron | 15.0% |
| !!! | TAAAAGAATCATTCATTTTT+AGG | - | chr7_3:78008215-78008234 | None:intergenic | 15.0% |
| !! | ACAATATTACAATACAAATT+TGG | + | chr7_3:78008812-78008831 | Msa1126460:intron | 15.0% |
| !!! | AACTTTTTCTTATAGTAATA+AGG | + | chr7_3:78009074-78009093 | Msa1126460:intron | 15.0% |
| !!! | GATTAGAGATAATAATATTT+TGG | - | chr7_3:78009302-78009321 | None:intergenic | 15.0% |
| !!! | TTTTAATCTTTAACAACTTT+AGG | + | chr7_3:78009411-78009430 | Msa1126460:intron | 15.0% |
| !! | TAATTTACTTGTGATAATAT+TGG | - | chr7_3:78010264-78010283 | None:intergenic | 15.0% |
| !! | TTTAATATAGGCTAAAAATA+TGG | - | chr7_3:78010323-78010342 | None:intergenic | 15.0% |
| !!! | AGAATTTCTCATCTAATTTT+CGG | + | chr7_3:78008041-78008060 | Msa1126460:intron | 20.0% |
| !! | AGTTCAACGAATAAATAATT+TGG | - | chr7_3:78008166-78008185 | None:intergenic | 20.0% |
| !! | TATCTTTCACTTTGTATTTA+TGG | + | chr7_3:78008388-78008407 | Msa1126460:intron | 20.0% |
| !!! | AATTTTGCACTTTTTTTTAG+AGG | + | chr7_3:78008456-78008475 | Msa1126460:intron | 20.0% |
| !! | TGTAAAATAGTCAAATGAAT+TGG | + | chr7_3:78008501-78008520 | Msa1126460:intron | 20.0% |
| !!! | TTCATTATTTTCAAAGAAGT+TGG | - | chr7_3:78008651-78008670 | None:intergenic | 20.0% |
| !!! | GTCAATTGTTTCTTATAATA+AGG | - | chr7_3:78008972-78008991 | None:intergenic | 20.0% |
| !!! | TAAGAAACAATTGACTTTTT+TGG | + | chr7_3:78008977-78008996 | Msa1126460:intron | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | - | chr7_3:78009066-78009085 | None:intergenic | 20.0% |
| !! | ACATAAAGTCAACTAAATAT+TGG | - | chr7_3:78009154-78009173 | None:intergenic | 20.0% |
| !! | AGTTGTTAAAGATTAAAAGA+GGG | - | chr7_3:78009409-78009428 | None:intergenic | 20.0% |
| !! | AAGTTGTTAAAGATTAAAAG+AGG | - | chr7_3:78009410-78009429 | None:intergenic | 20.0% |
| !! | TTAGCACATATATGTAAAAT+TGG | - | chr7_3:78009893-78009912 | None:intergenic | 20.0% |
| !!! | ATTTCCAATTTTTCAGATTT+TGG | + | chr7_3:78009934-78009953 | Msa1126460:intron | 20.0% |
| !! | ATTAAATACATTGAGTTTGA+GGG | + | chr7_3:78010137-78010156 | Msa1126460:CDS | 20.0% |
| !! | GATAAATAAGTCATTGTTAT+CGG | + | chr7_3:78010363-78010382 | Msa1126460:three_prime_UTR | 20.0% |
| !!! | AATTTTAGTAATTTGTGTTG+TGG | + | chr7_3:78010421-78010440 | Msa1126460:three_prime_UTR | 20.0% |
| !! | GAAATTTGAAGTTGTTAGAA+CGG | - | chr7_3:78007355-78007374 | None:intergenic | 25.0% |
| ! | ATACAACAATTGTGAATATG+GGG | - | chr7_3:78007551-78007570 | None:intergenic | 25.0% |
| ! | CATACAACAATTGTGAATAT+GGG | - | chr7_3:78007552-78007571 | None:intergenic | 25.0% |
| ! | TCATACAACAATTGTGAATA+TGG | - | chr7_3:78007553-78007572 | None:intergenic | 25.0% |
| ! | TTTGACAGTGTGTTTATTAT+GGG | + | chr7_3:78007743-78007762 | Msa1126460:CDS | 25.0% |
| !! | AATAAGAGGTTATGTTTTGT+TGG | + | chr7_3:78007844-78007863 | Msa1126460:CDS | 25.0% |
| ! | AGAGCTTGAATTTGATATAT+AGG | - | chr7_3:78008143-78008162 | None:intergenic | 25.0% |
| !! | CTTTGAAAATAATGAAGCAT+TGG | + | chr7_3:78008655-78008674 | Msa1126460:intron | 25.0% |
| ! | ACGACATTCTTTATTATACT+TGG | - | chr7_3:78008850-78008869 | None:intergenic | 25.0% |
| ! | TGTCATGGAAATTGAATATT+TGG | - | chr7_3:78008933-78008952 | None:intergenic | 25.0% |
| !! | TTGTTTCTTATAATAAGGAC+CGG | - | chr7_3:78008967-78008986 | None:intergenic | 25.0% |
| ! | TTTCTTATAGTAATAAGGAC+CGG | + | chr7_3:78009079-78009098 | Msa1126460:intron | 25.0% |
| !!! | CTTGCTAACAAGTTTTTTTA+AGG | - | chr7_3:78009277-78009296 | None:intergenic | 25.0% |
| !! | GATGGTTCTTATTTAAAGTT+AGG | + | chr7_3:78009339-78009358 | Msa1126460:intron | 25.0% |
| ! | TAATCTTTAACAACTTTAGG+TGG | + | chr7_3:78009414-78009433 | Msa1126460:intron | 25.0% |
| ! | ACTTGTGGTTCATTAAATTA+TGG | + | chr7_3:78009471-78009490 | Msa1126460:intron | 25.0% |
| !!! | TCATCAACTTTTTCCAATAT+AGG | + | chr7_3:78009514-78009533 | Msa1126460:intron | 25.0% |
| !! | TACTATTAGTTTGAAAGCAA+TGG | - | chr7_3:78009543-78009562 | None:intergenic | 25.0% |
| ! | ATTGCTTTCAAACTAATAGT+AGG | + | chr7_3:78009542-78009561 | Msa1126460:intron | 25.0% |
| ! | TACAAGTAATATTTACCACA+TGG | - | chr7_3:78009571-78009590 | None:intergenic | 25.0% |
| ! | AAGATTGAAAATCTTTACAC+TGG | - | chr7_3:78009651-78009670 | None:intergenic | 25.0% |
| ! | TTATAAAGGGTTCTATGATT+TGG | - | chr7_3:78009680-78009699 | None:intergenic | 25.0% |
| ! | TTATAAAGGGTTCTATGATT+TGG | - | chr7_3:78009680-78009699 | None:intergenic | 25.0% |
| ! | CAATGAATTGCTTAAAGATA+GGG | + | chr7_3:78010073-78010092 | Msa1126460:CDS | 25.0% |
| ! | CATTAAATACATTGAGTTTG+AGG | + | chr7_3:78010136-78010155 | Msa1126460:CDS | 25.0% |
| ! | TTAAATACATTGAGTTTGAG+GGG | + | chr7_3:78010138-78010157 | Msa1126460:CDS | 25.0% |
| CAAATGCAAATTCGAAATGA+TGG | - | chr7_3:78007218-78007237 | None:intergenic | 30.0% | |
| ATTTGCAAATCAAACACACA+AGG | + | chr7_3:78007233-78007252 | Msa1126460:five_prime_UTR | 30.0% | |
| !! | TTCTTGTTGTTGATGTTGTT+TGG | - | chr7_3:78007464-78007483 | None:intergenic | 30.0% |
| CTTTGACAGTGTGTTTATTA+TGG | + | chr7_3:78007742-78007761 | Msa1126460:CDS | 30.0% | |
| ATTGAACCTGTAAGAATAAG+AGG | + | chr7_3:78007830-78007849 | Msa1126460:CDS | 30.0% | |
| ACATAACCTCTTATTCTTAC+AGG | - | chr7_3:78007839-78007858 | None:intergenic | 30.0% | |
| TCAAGATTCAATGTTTGTTC+TGG | - | chr7_3:78007917-78007936 | None:intergenic | 30.0% | |
| GAGCCACATTATAATATTGT+GGG | - | chr7_3:78008562-78008581 | None:intergenic | 30.0% | |
| AGAGCCACATTATAATATTG+TGG | - | chr7_3:78008563-78008582 | None:intergenic | 30.0% | |
| CAAAACTAAAACAAGTGAAG+TGG | - | chr7_3:78008751-78008770 | None:intergenic | 30.0% | |
| !!! | CACTTCACTTGTTTTAGTTT+TGG | + | chr7_3:78008749-78008768 | Msa1126460:intron | 30.0% |
| !!! | TTTTAGTTTTGGCCTTATCT+GGG | + | chr7_3:78008760-78008779 | Msa1126460:intron | 30.0% |
| TCTCTAATCGGACAATATTA+TGG | + | chr7_3:78009313-78009332 | Msa1126460:intron | 30.0% | |
| AAAGCAATGGAAACCTATAT+TGG | - | chr7_3:78009530-78009549 | None:intergenic | 30.0% | |
| !!! | GTACGTGTAGCATTTTTTTT+AGG | - | chr7_3:78009626-78009645 | None:intergenic | 30.0% |
| !! | TCCAATTTTTCAGATTTTGG+AGG | + | chr7_3:78009937-78009956 | Msa1126460:intron | 30.0% |
| ACCTCCAAAATCTGAAAAAT+TGG | - | chr7_3:78009941-78009960 | None:intergenic | 30.0% | |
| AGCTTCATTTGTTCAAGATT+TGG | - | chr7_3:78010026-78010045 | None:intergenic | 30.0% | |
| GCAATGAATTGCTTAAAGAT+AGG | + | chr7_3:78010072-78010091 | Msa1126460:CDS | 30.0% | |
| ATATTCAGAAACTGCAAAAG+AGG | + | chr7_3:78010190-78010209 | Msa1126460:CDS | 30.0% | |
| ! | TTTGAAGCATGAACTGTTTA+AGG | - | chr7_3:78010226-78010245 | None:intergenic | 30.0% |
| CCTACAAACTGCTTTAATAT+AGG | - | chr7_3:78010335-78010354 | None:intergenic | 30.0% | |
| CCTATATTAAAGCAGTTTGT+AGG | + | chr7_3:78010332-78010351 | Msa1126460:three_prime_UTR | 30.0% | |
| TAAAGCAGTTTGTAGGATTA+AGG | + | chr7_3:78010339-78010358 | Msa1126460:three_prime_UTR | 30.0% | |
| !! | CAAATTCGAAATGATGGATG+AGG | - | chr7_3:78007212-78007231 | None:intergenic | 35.0% |
| GAAGTTGTTAGAACGGTAAA+TGG | - | chr7_3:78007348-78007367 | None:intergenic | 35.0% | |
| ACTGAGTTGTCTTCTATTGT+GGG | - | chr7_3:78007383-78007402 | None:intergenic | 35.0% | |
| TACTGAGTTGTCTTCTATTG+TGG | - | chr7_3:78007384-78007403 | None:intergenic | 35.0% | |
| !! | TGATGTTGTTTGGTTTGTAG+AGG | - | chr7_3:78007454-78007473 | None:intergenic | 35.0% |
| TTTATTATGGGTGACTCTTC+TGG | + | chr7_3:78007755-78007774 | Msa1126460:CDS | 35.0% | |
| AGATTCAATGTTTGTTCTGG+AGG | - | chr7_3:78007914-78007933 | None:intergenic | 35.0% | |
| TGAATCTTGACTTACTAGAC+AGG | + | chr7_3:78007927-78007946 | Msa1126460:CDS | 35.0% | |
| CGGTAGAATCATGAATTGAA+TGG | + | chr7_3:78008061-78008080 | Msa1126460:intron | 35.0% | |
| AATACTTACCTCGTTCATTC+TGG | + | chr7_3:78008325-78008344 | Msa1126460:intron | 35.0% | |
| CCACATTATAATATTGTGGG+TGG | - | chr7_3:78008559-78008578 | None:intergenic | 35.0% | |
| CCACCCACAATATTATAATG+TGG | + | chr7_3:78008556-78008575 | Msa1126460:intron | 35.0% | |
| !!! | TGTGGCTCTTTTTTTACAGT+AGG | + | chr7_3:78008574-78008593 | Msa1126460:intron | 35.0% |
| CATTGGTATCCAAAGTTATC+TGG | + | chr7_3:78008672-78008691 | Msa1126460:intron | 35.0% | |
| CATTTAATTACCTACGTCCA+TGG | - | chr7_3:78008711-78008730 | None:intergenic | 35.0% | |
| CATGGACGTAGGTAATTAAA+TGG | + | chr7_3:78008709-78008728 | Msa1126460:intron | 35.0% | |
| TGAAGTGGTTGTGTTTATTG+GGG | - | chr7_3:78008736-78008755 | None:intergenic | 35.0% | |
| GTGAAGTGGTTGTGTTTATT+GGG | - | chr7_3:78008737-78008756 | None:intergenic | 35.0% | |
| AGTGAAGTGGTTGTGTTTAT+TGG | - | chr7_3:78008738-78008757 | None:intergenic | 35.0% | |
| !!! | GTTTTAGTTTTGGCCTTATC+TGG | + | chr7_3:78008759-78008778 | Msa1126460:intron | 35.0% |
| TTCTTATAATAAGGACCGGA+GGG | - | chr7_3:78008963-78008982 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | - | chr7_3:78008964-78008983 | None:intergenic | 35.0% | |
| TTATAGTAATAAGGACCGGA+GGG | + | chr7_3:78009083-78009102 | Msa1126460:intron | 35.0% | |
| CGGACAATATTATGGAATGA+TGG | + | chr7_3:78009321-78009340 | Msa1126460:intron | 35.0% | |
| ACTAATAGTAGGTTTCCATG+TGG | + | chr7_3:78009553-78009572 | Msa1126460:intron | 35.0% | |
| ! | AATGAAGCTTGATCCCATTT+TGG | + | chr7_3:78010037-78010056 | Msa1126460:CDS | 35.0% |
| AACTATGCAACAAGGTTGAA+AGG | + | chr7_3:78010101-78010120 | Msa1126460:CDS | 35.0% | |
| !! | AAGTCATTGTTATCGGTTTG+TGG | + | chr7_3:78010370-78010389 | Msa1126460:three_prime_UTR | 35.0% |
| !!! | TATCGGTTTGTGGTTTTTAG+TGG | + | chr7_3:78010380-78010399 | Msa1126460:three_prime_UTR | 35.0% |
| TTCCTTCAACTCTATAGCGA+CGG | + | chr7_3:78007320-78007339 | Msa1126460:CDS | 40.0% | |
| GTCGAAAAGACAGTCTTTGA+AGG | - | chr7_3:78007408-78007427 | None:intergenic | 40.0% | |
| !! | AATTGATGATGCTGTCGAAG+CGG | + | chr7_3:78007649-78007668 | Msa1126460:CDS | 40.0% |
| ACTGTCAAAGTCAACATCAC+TGG | - | chr7_3:78007732-78007751 | None:intergenic | 40.0% | |
| TGAACAAACCAGAATGAACG+AGG | - | chr7_3:78008336-78008355 | None:intergenic | 40.0% | |
| TTGTGGGTGGAAATTGTGAA+CGG | - | chr7_3:78008546-78008565 | None:intergenic | 40.0% | |
| TATCCAAAGTTATCTGGCCA+AGG | + | chr7_3:78008678-78008697 | Msa1126460:intron | 40.0% | |
| CTTATAGTAATAAGGACCGG+AGG | + | chr7_3:78009082-78009101 | Msa1126460:intron | 40.0% | |
| ! | TTTTCACCTAATACTCCCTC+CGG | - | chr7_3:78009101-78009120 | None:intergenic | 40.0% |
| AGAGAGTAGAGATCATCCAT+TGG | + | chr7_3:78009977-78009996 | Msa1126460:CDS | 40.0% | |
| TTTGGACTTCCATGTCCAAA+TGG | - | chr7_3:78010008-78010027 | None:intergenic | 40.0% | |
| !! | GATCCCATTTTGGTGATAGT+TGG | + | chr7_3:78010047-78010066 | Msa1126460:CDS | 40.0% |
| CCACCAACTATCACCAAAAT+GGG | - | chr7_3:78010053-78010072 | None:intergenic | 40.0% | |
| GCAACAAGGTTGAAAGGAAT+AGG | + | chr7_3:78010107-78010126 | Msa1126460:CDS | 40.0% | |
| ATGCAATCCTCTACTACGTG+GGG | - | chr7_3:78007296-78007315 | None:intergenic | 45.0% | |
| CATGCAATCCTCTACTACGT+GGG | - | chr7_3:78007297-78007316 | None:intergenic | 45.0% | |
| CACGTAGTAGAGGATTGCAT+GGG | + | chr7_3:78007296-78007315 | Msa1126460:CDS | 45.0% | |
| AACCGTCGCTATAGAGTTGA+AGG | - | chr7_3:78007325-78007344 | None:intergenic | 45.0% | |
| CCATGAAGGAACACAATCAC+TGG | - | chr7_3:78007497-78007516 | None:intergenic | 45.0% | |
| CCAGTGATTGTGTTCCTTCA+TGG | + | chr7_3:78007494-78007513 | Msa1126460:CDS | 45.0% | |
| GTGATTGTGTTCCTTCATGG+TGG | + | chr7_3:78007497-78007516 | Msa1126460:CDS | 45.0% | |
| ATTGTGTTCCTTCATGGTGG+AGG | + | chr7_3:78007500-78007519 | Msa1126460:CDS | 45.0% | |
| AACAAAAGCCTCCACCATGA+AGG | - | chr7_3:78007511-78007530 | None:intergenic | 45.0% | |
| !! | CATGGTGGAGGCTTTTGTTT+CGG | + | chr7_3:78007512-78007531 | Msa1126460:CDS | 45.0% |
| TGTGAATATGGGGCCATGTA+CGG | - | chr7_3:78007541-78007560 | None:intergenic | 45.0% | |
| CATCAATTGCAGCTGGAAGA+CGG | - | chr7_3:78007637-78007656 | None:intergenic | 45.0% | |
| ACAGCATCATCAATTGCAGC+TGG | - | chr7_3:78007644-78007663 | None:intergenic | 45.0% | |
| ATTATGGGTGACTCTTCTGG+CGG | + | chr7_3:78007758-78007777 | Msa1126460:CDS | 45.0% | |
| !! | TCGGTTTGGATTGGATCGAA+CGG | + | chr7_3:78007805-78007824 | Msa1126460:CDS | 45.0% |
| !!! | GTTTTGTTGGCGCCGTTTTT+TGG | + | chr7_3:78007857-78007876 | Msa1126460:CDS | 45.0% |
| CTTGACTTACTAGACAGGTG+AGG | + | chr7_3:78007932-78007951 | Msa1126460:intron | 45.0% | |
| TTACCTACGTCCATGGCTAT+TGG | - | chr7_3:78008704-78008723 | None:intergenic | 45.0% | |
| ! | AACAACTTTAGGTGGTGCCA+TGG | + | chr7_3:78009422-78009441 | Msa1126460:intron | 45.0% |
| GCGACATCATGAGAAACTTG+TGG | + | chr7_3:78009456-78009475 | Msa1126460:intron | 45.0% | |
| TGATCTCTACTCTCTCCAAC+AGG | - | chr7_3:78009972-78009991 | None:intergenic | 45.0% | |
| CATCCATTGGCGAATCCATT+TGG | + | chr7_3:78009990-78010009 | Msa1126460:CDS | 45.0% | |
| ! | TGTCCAAATGGATTCGCCAA+TGG | - | chr7_3:78009996-78010015 | None:intergenic | 45.0% |
| TTGGCGAATCCATTTGGACA+TGG | + | chr7_3:78009996-78010015 | Msa1126460:CDS | 45.0% | |
| !! | CCCATTTTGGTGATAGTTGG+TGG | + | chr7_3:78010050-78010069 | Msa1126460:CDS | 45.0% |
| GCCACCAACTATCACCAAAA+TGG | - | chr7_3:78010054-78010073 | None:intergenic | 45.0% | |
| ! | AGTTTGAGGGGTGTGAACAT+GGG | + | chr7_3:78010150-78010169 | Msa1126460:CDS | 45.0% |
| !!! | AATTAGAATAAATTATTTTA+GGG | - | chr7_3:78007988-78008007 | None:intergenic | 5.0% |
| !!! | AAATTAGAATAAATTATTTT+AGG | - | chr7_3:78007989-78008008 | None:intergenic | 5.0% |
| ATCCTCTACTACGTGGGGAA+GGG | - | chr7_3:78007291-78007310 | None:intergenic | 50.0% | |
| AATCCTCTACTACGTGGGGA+AGG | - | chr7_3:78007292-78007311 | None:intergenic | 50.0% | |
| CCATGCAATCCTCTACTACG+TGG | - | chr7_3:78007298-78007317 | None:intergenic | 50.0% | |
| CCACGTAGTAGAGGATTGCA+TGG | + | chr7_3:78007295-78007314 | Msa1126460:CDS | 50.0% | |
| TTTGTTTCGGCTCCCGTACA+TGG | + | chr7_3:78007525-78007544 | Msa1126460:CDS | 50.0% | |
| GTGAATATGGGGCCATGTAC+GGG | - | chr7_3:78007540-78007559 | None:intergenic | 50.0% | |
| TGTTGTATGAGTCTAGCCGC+TGG | + | chr7_3:78007563-78007582 | Msa1126460:CDS | 50.0% | |
| ACCATGGCTCTCCATAACCA+TGG | - | chr7_3:78007703-78007722 | None:intergenic | 50.0% | |
| ACATCACTGGTCGTCAACCA+TGG | - | chr7_3:78007719-78007738 | None:intergenic | 50.0% | |
| TTATGGGTGACTCTTCTGGC+GGG | + | chr7_3:78007759-78007778 | Msa1126460:CDS | 50.0% | |
| GAATATTGCTCACCAGCTCG+CGG | + | chr7_3:78007781-78007800 | Msa1126460:CDS | 50.0% | |
| !!! | TTGTTGGCGCCGTTTTTTGG+CGG | + | chr7_3:78007860-78007879 | Msa1126460:CDS | 50.0% |
| CGTACTTCCCCGCCAAAAAA+CGG | - | chr7_3:78007872-78007891 | None:intergenic | 50.0% | |
| !!! | CGTTTTTTGGCGGGGAAGTA+CGG | + | chr7_3:78007870-78007889 | Msa1126460:CDS | 50.0% |
| ! | GGAAGTACGGACCAAATCTG+AGG | + | chr7_3:78007883-78007902 | Msa1126460:CDS | 50.0% |
| GTACGGACCAAATCTGAGGA+AGG | + | chr7_3:78007887-78007906 | Msa1126460:CDS | 50.0% | |
| TGGAGGACCTTCCTCAGATT+TGG | - | chr7_3:78007897-78007916 | None:intergenic | 50.0% | |
| ! | TGGCCTTGGCCAGATAACTT+TGG | - | chr7_3:78008684-78008703 | None:intergenic | 50.0% |
| CCATGACATCATACTCCCTC+CGG | + | chr7_3:78008945-78008964 | Msa1126460:intron | 50.0% | |
| !! | TAAGGACCGGAGGGAGTATT+AGG | + | chr7_3:78009092-78009111 | Msa1126460:intron | 50.0% |
| GTTTCTCATGATGTCGCGTG+TGG | - | chr7_3:78009453-78009472 | None:intergenic | 50.0% | |
| TGGAGGTTGTCAATGCCTGT+TGG | + | chr7_3:78009954-78009973 | Msa1126460:CDS | 50.0% | |
| GGGCTGCAAACTATGCAACA+AGG | + | chr7_3:78010093-78010112 | Msa1126460:CDS | 50.0% | |
| ! | GAGTTTGAGGGGTGTGAACA+TGG | + | chr7_3:78010149-78010168 | Msa1126460:CDS | 50.0% |
| TTCCCTTCCCCACGTAGTAG+AGG | + | chr7_3:78007286-78007305 | Msa1126460:CDS | 55.0% | |
| CACCAGTGCTTGAAGTCCAG+CGG | - | chr7_3:78007582-78007601 | None:intergenic | 55.0% | |
| !! | TCAAGCACTGGTGGTTGCAC+CGG | + | chr7_3:78007589-78007608 | Msa1126460:CDS | 55.0% |
| ATGATGCTGTCGAAGCGGTG+AGG | + | chr7_3:78007654-78007673 | Msa1126460:CDS | 55.0% | |
| AAGCGGTGAGGTGGCTTCAA+AGG | + | chr7_3:78007666-78007685 | Msa1126460:CDS | 55.0% | |
| GTGAGGTGGCTTCAAAGGCA+GGG | + | chr7_3:78007671-78007690 | Msa1126460:CDS | 55.0% | |
| TGAGGTGGCTTCAAAGGCAG+GGG | + | chr7_3:78007672-78007691 | Msa1126460:CDS | 55.0% | |
| CAGGGGTTGAGCCATGGTTA+TGG | + | chr7_3:78007689-78007708 | Msa1126460:CDS | 55.0% | |
| GCCATGGTTATGGAGAGCCA+TGG | + | chr7_3:78007699-78007718 | Msa1126460:CDS | 55.0% | |
| !!! | TGTTGGCGCCGTTTTTTGGC+GGG | + | chr7_3:78007861-78007880 | Msa1126460:CDS | 55.0% |
| ! | ACGTCCATGGCTATTGGCCT+TGG | - | chr7_3:78008698-78008717 | None:intergenic | 55.0% |
| AGGCCAATAGCCATGGACGT+AGG | + | chr7_3:78008698-78008717 | Msa1126460:intron | 55.0% | |
| GCACGTCACTCTCCCAGATA+AGG | - | chr7_3:78008775-78008794 | None:intergenic | 55.0% | |
| ! | CCGGAGGGAGTATGATGTCA+TGG | - | chr7_3:78008948-78008967 | None:intergenic | 55.0% |
| TCTCATGATGTCGCGTGTGG+TGG | - | chr7_3:78009450-78009469 | None:intergenic | 55.0% | |
| AGCCGCTGGACTTCAAGCAC+TGG | + | chr7_3:78007577-78007596 | Msa1126460:CDS | 60.0% | |
| !! | CGCTGGACTTCAAGCACTGG+TGG | + | chr7_3:78007580-78007599 | Msa1126460:CDS | 60.0% |
| TGGTGGTTGCACCGGACTAC+CGG | + | chr7_3:78007597-78007616 | Msa1126460:CDS | 60.0% | |
| TCTGGTGCAAGCCGGTAGTC+CGG | - | chr7_3:78007611-78007630 | None:intergenic | 60.0% | |
| ATGCTGTCGAAGCGGTGAGG+TGG | + | chr7_3:78007657-78007676 | Msa1126460:CDS | 60.0% | |
| GGTGAGGTGGCTTCAAAGGC+AGG | + | chr7_3:78007670-78007689 | Msa1126460:CDS | 60.0% | |
| CAAAGGCAGGGGTTGAGCCA+TGG | + | chr7_3:78007683-78007702 | Msa1126460:CDS | 60.0% | |
| TTGCTCACCAGCTCGCGGTT+CGG | + | chr7_3:78007786-78007805 | Msa1126460:CDS | 60.0% | |
| ATCCAAACCGAACCGCGAGC+TGG | - | chr7_3:78007796-78007815 | None:intergenic | 60.0% | |
| !! | GCTCGCGGTTCGGTTTGGAT+TGG | + | chr7_3:78007796-78007815 | Msa1126460:CDS | 60.0% |
| !!! | GTTGGCGCCGTTTTTTGGCG+GGG | + | chr7_3:78007862-78007881 | Msa1126460:CDS | 60.0% |
| CTGGCCAAGGCCAATAGCCA+TGG | + | chr7_3:78008691-78008710 | Msa1126460:intron | 60.0% | |
| GACGGTGCTCTGGTGCAAGC+CGG | - | chr7_3:78007619-78007638 | None:intergenic | 65.0% | |
| GCAGCTGGAAGACGGTGCTC+TGG | - | chr7_3:78007629-78007648 | None:intergenic | 65.0% | |
| !! | CACCAGCTCGCGGTTCGGTT+TGG | + | chr7_3:78007791-78007810 | Msa1126460:CDS | 65.0% |
| ! | TGTCGCGTGTGGTGGTGCCA+TGG | - | chr7_3:78009442-78009461 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 78007208 | 78010516 | 78007208 | ID=Msa1126460;Name=Msa1126460 |
| chr7_3 | mRNA | 78007208 | 78010516 | 78007208 | ID=Msa1126460-mRNA-1;Parent=Msa1126460;Name=Msa1126460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=73|1|1|1|1|1|2|260|324 |
| chr7_3 | exon | 78007208 | 78007948 | 78007208 | ID=Msa1126460-mRNA-1:exon:21663;Parent=Msa1126460-mRNA-1 |
| chr7_3 | exon | 78009950 | 78010516 | 78009950 | ID=Msa1126460-mRNA-1:exon:21664;Parent=Msa1126460-mRNA-1 |
| chr7_3 | five_prime_UTR | 78007208 | 78007280 | 78007208 | ID=Msa1126460-mRNA-1:five_prime_utr;Parent=Msa1126460-mRNA-1 |
| chr7_3 | CDS | 78007281 | 78007948 | 78007281 | ID=Msa1126460-mRNA-1:cds;Parent=Msa1126460-mRNA-1 |
| chr7_3 | CDS | 78009950 | 78010256 | 78009950 | ID=Msa1126460-mRNA-1:cds;Parent=Msa1126460-mRNA-1 |
| chr7_3 | three_prime_UTR | 78010257 | 78010516 | 78010257 | ID=Msa1126460-mRNA-1:three_prime_utr;Parent=Msa1126460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
