AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075830 MtrunA17_Chr1g0184771 97.830 553 12 0 1 553 1 553 0.0 1110
Msa0075830 MtrunA17_Chr6g0462411 53.878 477 213 5 66 536 16 491 2.10e-180 517
Msa0075830 MtrunA17_Chr4g0068201 32.669 502 295 15 48 521 54 540 2.43e-49 179
Msa0075830 MtrunA17_Chr2g0294661 31.707 492 292 15 58 521 68 543 1.89e-48 177
Msa0075830 MtrunA17_Chr4g0068951 27.331 472 318 9 70 521 20 486 5.96e-46 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075830 AT3G54660.1 82.129 498 88 1 55 552 68 564 0.0 874
Msa0075830 AT3G24170.1 53.419 468 211 4 72 533 23 489 9.69e-177 508
Msa0075830 AT3G24170.2 53.419 468 211 4 72 533 23 489 9.69e-177 508
Msa0075830 AT3G24170.3 53.419 468 211 4 72 533 23 489 9.69e-177 508
Msa0075830 AT3G16950.1 32.206 562 319 20 3 521 2 544 5.77e-50 181
Msa0075830 AT3G16950.2 32.206 562 319 20 3 521 2 544 1.35e-49 181
Msa0075830 AT4G16155.1 32.091 483 278 14 69 521 79 541 6.03e-48 176
Msa0075830 AT1G48030.2 26.559 433 298 8 104 521 64 491 1.90e-42 159
Msa0075830 AT1G48030.5 26.559 433 298 8 104 521 64 491 1.90e-42 159
Msa0075830 AT1G48030.3 26.559 433 298 8 104 521 64 491 1.90e-42 159
Msa0075830 AT1G48030.1 26.559 433 298 8 104 521 64 491 1.90e-42 159
Msa0075830 AT1G48030.4 26.559 433 298 8 104 521 64 491 1.90e-42 159
Msa0075830 AT3G17240.1 28.082 438 287 10 103 521 63 491 1.67e-41 157
Msa0075830 AT3G17240.3 28.082 438 287 10 103 521 63 491 1.67e-41 157

Find 171 sgRNAs with CRISPR-Local

Find 442 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACGCTTTGCTTCCAATTT+TGG 0.092567 1_2:+51409408 Msa0075830:CDS
CCACTGAAGGCCACCCTCTC+TGG 0.136948 1_2:+51413444 Msa0075830:CDS
GAGTTTGCTGGTATCTTTAA+TGG 0.157959 1_2:+51411261 Msa0075830:CDS
AAAAGGGCGGAATGGAATTT+TGG 0.164446 1_2:+51415477 Msa0075830:three_prime_UTR
AAACATCGGTTCCTTCAATT+TGG 0.171733 1_2:+51412388 Msa0075830:CDS
GGTGAAGAAGAGAGTGTTTC+GGG 0.199422 1_2:-51409199 None:intergenic
GCTCGCACGCACGCTATATT+TGG 0.221753 1_2:-51408991 None:intergenic
ACAATTTCACTGCAGAATTT+AGG 0.226558 1_2:+51412221 Msa0075830:intron
AAACTTCATACCTTAGTATT+AGG 0.232538 1_2:-51411600 None:intergenic
TAATTTATCCTGCACAAAAT+AGG 0.258352 1_2:+51415711 Msa0075830:three_prime_UTR
GCTGAGTTGCAGAGGCTTAC+TGG 0.274604 1_2:+51410880 Msa0075830:CDS
GAATAATACAAATTGGTCTT+TGG 0.276446 1_2:-51409031 None:intergenic
TTTGAAGAAAGCAATGGTTT+TGG 0.285225 1_2:+51410799 Msa0075830:CDS
TCTCACTCCAGTTGCTTTGA+TGG 0.293228 1_2:+51412440 Msa0075830:CDS
TACATTGCCTTGGAGTTTGC+TGG 0.310725 1_2:+51411249 Msa0075830:CDS
AGCAGCGTTAGCACCAAAAT+TGG 0.316676 1_2:-51409421 None:intergenic
TCTATTGCATATTCCTTTCC+AGG 0.317991 1_2:-51411165 None:intergenic
AGATTGAGAGACTAGGGTTT+TGG 0.318189 1_2:-51409271 None:intergenic
CCCTTCATTCCTGATATTCC+TGG 0.322317 1_2:+51411147 Msa0075830:CDS
CCCTCTCTGGGCTTCCAGAC+CGG 0.323993 1_2:+51413457 Msa0075830:CDS
AGAGTGAAGGAACGAGAAAA+TGG 0.325996 1_2:-51409231 None:intergenic
GAGAGTGTTTCGGGTAAGTA+AGG 0.332461 1_2:-51409190 None:intergenic
TATTCCTTTCCAGGAATATC+AGG 0.334157 1_2:-51411156 None:intergenic
AACATCGGTTCCTTCAATTT+GGG 0.350449 1_2:+51412389 Msa0075830:CDS
AGCCAACAAAACCTGATTAT+AGG 0.353075 1_2:+51412499 Msa0075830:CDS
ACGAGAAAATGGGAAGGTTT+TGG 0.361594 1_2:-51409220 None:intergenic
CCTCTCTGGGCTTCCAGACC+GGG 0.370019 1_2:+51413458 Msa0075830:CDS
CCAACAATGGCAATCTTCTC+AGG 0.371658 1_2:-51411219 None:intergenic
CACTGAAGGCCACCCTCTCT+GGG 0.374084 1_2:+51413445 Msa0075830:CDS
AGCACGGACACCTCCGCTTC+CGG 0.374495 1_2:-51409385 None:intergenic
AATGTATATTACCTATAATC+AGG 0.374502 1_2:-51412510 None:intergenic
AACTCCTCCAATTGGTGGTT+GGG 0.383902 1_2:-51413250 None:intergenic
CTTATTTAATTTGAAGCAGT+TGG 0.384914 1_2:+51415608 Msa0075830:three_prime_UTR
AAGGCATCGGCAAGTTTCTC+TGG 0.389438 1_2:-51414362 None:intergenic
ATGAGTTGAATAATACAAAT+TGG 0.398261 1_2:-51409038 None:intergenic
GCATAGACGAGTAATTTCTT+TGG 0.399267 1_2:-51410757 None:intergenic
TTCCGGCACCGATGGTAAAA+AGG 0.400621 1_2:-51409368 None:intergenic
TGTCTTGAAAGCTCAGTTGC+CGG 0.405143 1_2:-51415424 None:intergenic
GACGTGTTAAATAAGCAGTT+TGG 0.410754 1_2:+51409087 Msa0075830:five_prime_UTR
AACTGAAACTAAAATGTGTT+TGG 0.416281 1_2:-51411115 None:intergenic
CTACAGGAGACTCCTCAGTA+TGG 0.424734 1_2:-51411482 None:intergenic
TGGTGAAGAAGAGAGTGTTT+CGG 0.426258 1_2:-51409200 None:intergenic
CCTCACACAGTTGATGTTGA+TGG 0.426893 1_2:+51411078 Msa0075830:CDS
TTCTGGGTTTGCACATGTGT+GGG 0.429264 1_2:+51413520 Msa0075830:CDS
TCTAATGTCAAGTTGATTGA+AGG 0.429954 1_2:+51410928 Msa0075830:CDS
ACTCCCTCCATCAAAGCAAC+TGG 0.439081 1_2:-51412447 None:intergenic
GTTCCTTCAATTTGGGCAAT+CGG 0.441096 1_2:+51412396 Msa0075830:CDS
TTTGCAGTTGCTATTAAAGC+TGG 0.444400 1_2:+51413656 Msa0075830:CDS
GCACAGGCTGTAGAACAATA+TGG 0.445183 1_2:+51413390 Msa0075830:intron
ACCATCCACAGTACCTTTGC+TGG 0.445789 1_2:-51411544 None:intergenic
CTTGATTTACCTGTGAATCA+AGG 0.448766 1_2:-51413778 None:intergenic
TTTACCATCGGTGCCGGAAG+CGG 0.452329 1_2:+51409372 Msa0075830:CDS
TCTCATATTATGTTTGCTAC+AGG 0.452576 1_2:+51411570 Msa0075830:CDS
CGGGGTGAGCTCATTTGAAA+AGG 0.452701 1_2:+51415460 Msa0075830:three_prime_UTR
AGAAACTTGCCGATGCCTTA+AGG 0.453029 1_2:+51414366 Msa0075830:three_prime_UTR
ACAGTGAACCTAAGCATGAT+TGG 0.455004 1_2:+51410833 Msa0075830:CDS
TGTATTTATACGACAAAAGC+AGG 0.455244 1_2:+51411302 Msa0075830:CDS
CCTGAGAAGATTGCCATTGT+TGG 0.456099 1_2:+51411219 Msa0075830:CDS
TCGAAAGAGCCTTGATTCAC+AGG 0.456430 1_2:+51413769 Msa0075830:CDS
GAGTGAAGGAACGAGAAAAT+GGG 0.461752 1_2:-51409230 None:intergenic
AGGACGCAAACCTAATACTA+AGG 0.462907 1_2:+51411590 Msa0075830:CDS
AATACAAATTGGTCTTTGGC+TGG 0.465278 1_2:-51409027 None:intergenic
TCTCCGATTGCCCAAATTGA+AGG 0.476874 1_2:-51412399 None:intergenic
ACTCCAGTTGCTTTGATGGA+GGG 0.482584 1_2:+51412444 Msa0075830:CDS
AGTTGGTCTCACAGAGGAGC+AGG 0.483401 1_2:+51413269 Msa0075830:CDS
TCCAGGAATATCAGGAATGA+AGG 0.485140 1_2:-51411148 None:intergenic
GTGAGACCAACTCCTCCAAT+TGG 0.485622 1_2:-51413258 None:intergenic
AAACTACTCCAATCATGCTT+AGG 0.489785 1_2:-51410841 None:intergenic
ACAAACTCCTCAGCTGCGGT+TGG 0.490186 1_2:-51413719 None:intergenic
TTACGTGCCGCCGACACCTC+CGG 0.490393 1_2:-51409484 None:intergenic
AGTTGCTTTGATGGAGGGAG+TGG 0.491872 1_2:+51412449 Msa0075830:CDS
CAATCGGAGATGCTACAAAC+AGG 0.496018 1_2:+51412412 Msa0075830:CDS
TTCCTCTGAATATGTACAAA+GGG 0.496817 1_2:-51415546 None:intergenic
CAAACTCCTCAGCTGCGGTT+GGG 0.497195 1_2:-51413718 None:intergenic
CAACCACCAATTGGAGGAGT+TGG 0.497734 1_2:+51413252 Msa0075830:CDS
GTGTTCTCCCAACCACCAAT+TGG 0.499772 1_2:+51413243 Msa0075830:CDS
CTCATTTGAAAAGGGCGGAA+TGG 0.507703 1_2:+51415469 Msa0075830:three_prime_UTR
AAAGCAATATTGTTAAGTTC+CGG 0.508995 1_2:-51414324 None:intergenic
TTCACTGCAGAATTTAGGAC+TGG 0.509056 1_2:+51412226 Msa0075830:intron
GGTTGGGAGAACACAGCAGC+AGG 0.513851 1_2:-51413234 None:intergenic
CTTCCTAGTGGGAGTCCTCA+TGG 0.514013 1_2:-51413744 None:intergenic
ACCTCCGCTTCCGGCACCGA+TGG 0.516522 1_2:-51409376 None:intergenic
GAGAGAAGGTGGGAGAGTGA+AGG 0.518194 1_2:-51409244 None:intergenic
CACGAATTTGAAGAAAGCAA+TGG 0.518983 1_2:+51410793 Msa0075830:CDS
CAACTCCTCCAATTGGTGGT+TGG 0.519267 1_2:-51413251 None:intergenic
CATTCCTGATATTCCTGGAA+AGG 0.522049 1_2:+51411152 Msa0075830:CDS
CACTCCAGTTGCTTTGATGG+AGG 0.522427 1_2:+51412443 Msa0075830:CDS
TAAGGGAGAAGAACAAGAGA+GGG 0.523490 1_2:-51409172 None:intergenic
AAGACAATACATGAAATAGC+GGG 0.527633 1_2:+51415441 Msa0075830:three_prime_UTR
GTTCTGGGTTTGCACATGTG+TGG 0.535374 1_2:+51413519 Msa0075830:CDS
TGGAGGAGATTGAGAGACTA+GGG 0.535518 1_2:-51409277 None:intergenic
GGTGGTATCCGATGAGATAG+TGG 0.536762 1_2:-51409463 None:intergenic
TATCCTGCACAAAATAGGAT+GGG 0.538621 1_2:+51415716 Msa0075830:three_prime_UTR
AGAAGATTGCCATTGTTGGT+GGG 0.539271 1_2:+51411223 Msa0075830:CDS
AGAGTGTTTCGGGTAAGTAA+GGG 0.540382 1_2:-51409189 None:intergenic
CCAGAGAGGGTGGCCTTCAG+TGG 0.541109 1_2:-51413444 None:intergenic
TGATGCTCCTGAAATTGTGC+AGG 0.541563 1_2:+51413545 Msa0075830:CDS
GCTGCCTTAGTGATAGCTAC+AGG 0.541775 1_2:-51411498 None:intergenic
TCACCCTTACCTTAAGGCAT+CGG 0.541805 1_2:-51414375 None:intergenic
GAGAAGATTGCCATTGTTGG+TGG 0.542063 1_2:+51411222 Msa0075830:CDS
TGCTAAAGATGGATCAATAG+AGG 0.542879 1_2:+51412268 Msa0075830:CDS
TCGAAGTCATAGTGGATGGT+GGG 0.543172 1_2:-51409345 None:intergenic
AATTTAGGACTGGAGTCTGT+TGG 0.543197 1_2:+51412236 Msa0075830:CDS
GAAGATTGCCATTGTTGGTG+GGG 0.543504 1_2:+51411224 Msa0075830:CDS
GTCAAGTTGATTGAAGGCCG+TGG 0.546121 1_2:+51410934 Msa0075830:CDS
GGGGTGAGCTCATTTGAAAA+GGG 0.546489 1_2:+51415461 Msa0075830:three_prime_UTR
GTCTGGAAGCCCAGAGAGGG+TGG 0.547984 1_2:-51413454 None:intergenic
ACCATCGGTGCCGGAAGCGG+AGG 0.550091 1_2:+51409375 Msa0075830:CDS
GTCCGCGCTGAATCGCAAAA+CGG 0.551511 1_2:+51409315 Msa0075830:CDS
CTCACACAGTTGATGTTGAT+GGG 0.555032 1_2:+51411079 Msa0075830:CDS
CTCTTTCGAATCTTCCTAGT+GGG 0.556074 1_2:-51413755 None:intergenic
GTAAGGGAGAAGAACAAGAG+AGG 0.557001 1_2:-51409173 None:intergenic
TCGGATACCACCGGAGGTGT+CGG 0.560790 1_2:+51409474 Msa0075830:CDS
TTATCCTGCACAAAATAGGA+TGG 0.562058 1_2:+51415715 Msa0075830:three_prime_UTR
CTCTCTTTAAAGACCAGCAA+AGG 0.565512 1_2:+51411531 Msa0075830:CDS
ACTAATGAAGCAAGCAGCAA+TGG 0.570686 1_2:+51409137 Msa0075830:exon
CAGCGCGGACGGCGAAAGTG+CGG 0.571178 1_2:-51409302 None:intergenic
GTTGATTGAAGGCCGTGGAA+AGG 0.572186 1_2:+51410939 Msa0075830:CDS
TCTGAAGCAAAAGCTGTAGC+CGG 0.574037 1_2:+51414305 Msa0075830:CDS
AAGATTGCCATTGTTGGTGG+GGG 0.574113 1_2:+51411225 Msa0075830:CDS
TCCGTTCTCCACTATCTCAT+CGG 0.574933 1_2:+51409455 Msa0075830:CDS
GTGGAGGAGATTGAGAGACT+AGG 0.578466 1_2:-51409278 None:intergenic
GGTGTGAAGATTGCTAAAGA+TGG 0.580574 1_2:+51412257 Msa0075830:CDS
GCAGAAAATATGGCTCTAAG+AGG 0.582671 1_2:+51411450 Msa0075830:CDS
ATCCCTTTGTACATATTCAG+AGG 0.583715 1_2:+51415544 Msa0075830:three_prime_UTR
TGAATATGTACAAAGGGATG+AGG 0.585149 1_2:-51415540 None:intergenic
CCGGTCTGGAAGCCCAGAGA+GGG 0.587282 1_2:-51413457 None:intergenic
ACCAGCAAAGGTACTGTGGA+TGG 0.587704 1_2:+51411543 Msa0075830:CDS
CATTCACCCAACCGCAGCTG+AGG 0.593036 1_2:+51413712 Msa0075830:CDS
TTTCCTCTGAATATGTACAA+AGG 0.595056 1_2:-51415547 None:intergenic
TTCTCCCAACCACCAATTGG+AGG 0.598183 1_2:+51413246 Msa0075830:CDS
GTCGAAGTCATAGTGGATGG+TGG 0.602913 1_2:-51409346 None:intergenic
GCAGACTTTGATGCTACTGT+AGG 0.605910 1_2:+51413689 Msa0075830:CDS
ACTATCTCATCGGATACCAC+CGG 0.607136 1_2:+51409465 Msa0075830:CDS
GTCTCCTGTAGCTATCACTA+AGG 0.610701 1_2:+51411494 Msa0075830:CDS
CGAAGTCATAGTGGATGGTG+GGG 0.611104 1_2:-51409344 None:intergenic
TCACCATGAGGACTCCCACT+AGG 0.611633 1_2:+51413741 Msa0075830:CDS
TCTGGGTTTGCACATGTGTG+GGG 0.615085 1_2:+51413521 Msa0075830:CDS
CAAGACAATACATGAAATAG+CGG 0.617151 1_2:+51415440 Msa0075830:three_prime_UTR
ACGGCGAAAGTGCGGCGTGG+AGG 0.617262 1_2:-51409294 None:intergenic
TTTGCGAGGATTTGATGAAG+AGG 0.617316 1_2:+51411326 Msa0075830:CDS
AGAATCATCCCACCTTTCCA+CGG 0.618295 1_2:-51410951 None:intergenic
AAAGATACCAGCAAACTCCA+AGG 0.619374 1_2:-51411256 None:intergenic
ATCCTGCACAAAATAGGATG+GGG 0.619402 1_2:+51415717 Msa0075830:three_prime_UTR
TATTAAAGCTGGATTGACAA+AGG 0.619694 1_2:+51413667 Msa0075830:CDS
AAGGTCGAAGTCATAGTGGA+TGG 0.621241 1_2:-51409349 None:intergenic
CCAGGAATATCAGGAATGAA+GGG 0.621948 1_2:-51411147 None:intergenic
TCCGATGAGATAGTGGAGAA+CGG 0.624800 1_2:-51409456 None:intergenic
CCATCAACATCAACTGTGTG+AGG 0.629501 1_2:-51411078 None:intergenic
TGATGAATACTCTCAAACAT+CGG 0.635283 1_2:+51412374 Msa0075830:CDS
TGGAAGCAAAGCGTGAAGCA+CGG 0.635699 1_2:-51409401 None:intergenic
GCTATCACTAAGGCAGCTGA+TGG 0.636893 1_2:+51411504 Msa0075830:CDS
GTTGGAGTTGAGACACAGCA+TGG 0.639703 1_2:+51415626 Msa0075830:three_prime_UTR
TATTCAGAGGAAATCTCATG+AGG 0.640406 1_2:+51415557 Msa0075830:three_prime_UTR
AGACCAACTCCTCCAATTGG+TGG 0.641871 1_2:-51413255 None:intergenic
CGGACGGCGAAAGTGCGGCG+TGG 0.647299 1_2:-51409297 None:intergenic
GTGAGCTCATTTGAAAAGGG+CGG 0.650229 1_2:+51415464 Msa0075830:three_prime_UTR
GATACCACCGGAGGTGTCGG+CGG 0.653808 1_2:+51409477 Msa0075830:CDS
AAAGACCAGCAAAGGTACTG+TGG 0.654964 1_2:+51411539 Msa0075830:CDS
GAAGGAACGAGAAAATGGGA+AGG 0.663016 1_2:-51409226 None:intergenic
GGTGACAAACTCCTCAGCTG+CGG 0.664472 1_2:-51413723 None:intergenic
GCTCTTTCGAATCTTCCTAG+TGG 0.665678 1_2:-51413756 None:intergenic
ATTCAGAGGAAATCTCATGA+GGG 0.669097 1_2:+51415558 Msa0075830:three_prime_UTR
CGTGCCGCCGACACCTCCGG+TGG 0.685458 1_2:-51409481 None:intergenic
AGACAATACATGAAATAGCG+GGG 0.688655 1_2:+51415442 Msa0075830:three_prime_UTR
CTGAGGAGTTTGTCACCATG+AGG 0.689480 1_2:+51413729 Msa0075830:CDS
CCCGGTCTGGAAGCCCAGAG+AGG 0.691224 1_2:-51413458 None:intergenic
AGGTATTGAATTCCATACTG+AGG 0.697204 1_2:+51411470 Msa0075830:CDS
ATCTCATCGGATACCACCGG+AGG 0.706409 1_2:+51409468 Msa0075830:CDS
TTGTGCAGCTGTGTAATACG+TGG 0.758121 1_2:+51410727 Msa0075830:intron
TGGAGGAGTTGGTCTCACAG+AGG 0.772688 1_2:+51413263 Msa0075830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTGTTAAAAAAAAAAAA+TGG - chr1_2:51412825-51412844 None:intergenic 10.0%
!!! TTTTGTTTTAATATATTCTA+GGG + chr1_2:51414272-51414291 Msa0075830:intron 10.0%
!!! TTTTTCTCTGAAAAAAAAAA+TGG - chr1_2:51410142-51410161 None:intergenic 15.0%
!!! GATTTTTTGTATTGATTATT+AGG + chr1_2:51410233-51410252 Msa0075830:intron 15.0%
!!! TTAAACAATTTTTAAACTGT+TGG - chr1_2:51410399-51410418 None:intergenic 15.0%
!!! TTTTAGCATATGAAATAATT+TGG + chr1_2:51411739-51411758 Msa0075830:intron 15.0%
!! TTTCCATATTTATCAAAATT+AGG + chr1_2:51412014-51412033 Msa0075830:intron 15.0%
!!! ATTATGATTTACTAACATTT+TGG + chr1_2:51413361-51413380 Msa0075830:intron 15.0%
!! AATATGATACTTAATTCATT+TGG + chr1_2:51414070-51414089 Msa0075830:intron 15.0%
!! ATATGATACTTAATTCATTT+GGG + chr1_2:51414071-51414090 Msa0075830:intron 15.0%
!!! TTTTCTAAAAAATTTCGTAA+TGG + chr1_2:51414246-51414265 Msa0075830:intron 15.0%
!!! GTTTTGTTTTAATATATTCT+AGG + chr1_2:51414271-51414290 Msa0075830:intron 15.0%
!!! TTAAAAAAAATGGATTTTGT+AGG - chr1_2:51414612-51414631 None:intergenic 15.0%
!!! TTTGATTAAATGATTTTTTG+TGG + chr1_2:51414792-51414811 Msa0075830:intron 15.0%
!! ATGATTTATTCACAAAAAAA+AGG + chr1_2:51414832-51414851 Msa0075830:intron 15.0%
!!! GATCATTTTATTTAACATTA+AGG - chr1_2:51415585-51415604 None:intergenic 15.0%
!!! ATGAGTTGAATAATACAAAT+TGG - chr1_2:51409041-51409060 None:intergenic 20.0%
!!! ATTTGAATAACCAACTTTTT+AGG + chr1_2:51409761-51409780 Msa0075830:intron 20.0%
!! AAATTAACAACCTAAAAAGT+TGG - chr1_2:51409774-51409793 None:intergenic 20.0%
!! GTTAATTTAGTTGAAATATG+TGG + chr1_2:51409786-51409805 Msa0075830:intron 20.0%
!! TACATTCAATAGATAGTTAA+TGG - chr1_2:51410595-51410614 None:intergenic 20.0%
!! TTACAAAGCTATTTATTACA+TGG - chr1_2:51410989-51411008 None:intergenic 20.0%
!!! TAGTGCTTATAATCTTTTTT+TGG - chr1_2:51411703-51411722 None:intergenic 20.0%
!! ATTCATGTAATATTAAGCAA+GGG - chr1_2:51411968-51411987 None:intergenic 20.0%
!! TATTCATGTAATATTAAGCA+AGG - chr1_2:51411969-51411988 None:intergenic 20.0%
!!! GTTCCTAATTTTGATAAATA+TGG - chr1_2:51412020-51412039 None:intergenic 20.0%
!! AATGTATATTACCTATAATC+AGG - chr1_2:51412513-51412532 None:intergenic 20.0%
!! ACAAGCATTAAAAATTGATT+TGG + chr1_2:51412673-51412692 Msa0075830:intron 20.0%
!! TCATTTGTAGATATATTGAA+TGG + chr1_2:51413132-51413151 Msa0075830:intron 20.0%
!! ATTCATATGGAAATGATATA+TGG + chr1_2:51414114-51414133 Msa0075830:intron 20.0%
!! AATGATATATGGTACAAAAT+TGG + chr1_2:51414125-51414144 Msa0075830:intron 20.0%
!! ATGATATATGGTACAAAATT+GGG + chr1_2:51414126-51414145 Msa0075830:intron 20.0%
!!! TTTTGTAGGTAATAAGAAAT+GGG - chr1_2:51414598-51414617 None:intergenic 20.0%
!!! ATTTTGTAGGTAATAAGAAA+TGG - chr1_2:51414599-51414618 None:intergenic 20.0%
!!! AAGGTTTAAAATGATTAAGT+TGG + chr1_2:51414851-51414870 Msa0075830:intron 20.0%
!!! ATTTTTAATAATGTTTACGC+AGG + chr1_2:51415381-51415400 Msa0075830:intron 20.0%
!! AGCGAAAAATAAATTACAAA+TGG - chr1_2:51415516-51415535 None:intergenic 20.0%
!!! GAATAATACAAATTGGTCTT+TGG - chr1_2:51409034-51409053 None:intergenic 25.0%
! AAGTTTCTATTCATTCTCTT+AGG + chr1_2:51409505-51409524 Msa0075830:intron 25.0%
! AGTTTCTATTCATTCTCTTA+GGG + chr1_2:51409506-51409525 Msa0075830:intron 25.0%
! TCACATTGTAAAAATGGAAT+TGG + chr1_2:51409557-51409576 Msa0075830:intron 25.0%
! TGGCTAATAACATGATATTA+TGG + chr1_2:51409577-51409596 Msa0075830:intron 25.0%
!!! TAATTTGCTATTTTTCGCTT+TGG + chr1_2:51409689-51409708 Msa0075830:intron 25.0%
! TTGAAATATGTGGTTAATCA+TGG + chr1_2:51409796-51409815 Msa0075830:intron 25.0%
! TAATCATGGTATATAGTTCA+TGG + chr1_2:51409810-51409829 Msa0075830:intron 25.0%
! GTTAGAAGAACACATATATT+AGG + chr1_2:51410023-51410042 Msa0075830:intron 25.0%
!!! TTTTAAGAGAAGCATTTCTT+TGG + chr1_2:51410168-51410187 Msa0075830:intron 25.0%
!!! TTTGTATTGATTATTAGGAG+TGG + chr1_2:51410238-51410257 Msa0075830:intron 25.0%
!!! TTGTATTGATTATTAGGAGT+GGG + chr1_2:51410239-51410258 Msa0075830:intron 25.0%
!! ATTTTCCAAAAACCAAATAC+GGG - chr1_2:51410366-51410385 None:intergenic 25.0%
!! CATTTTCCAAAAACCAAATA+CGG - chr1_2:51410367-51410386 None:intergenic 25.0%
!! AACTTTCATGACAACTTTTA+AGG - chr1_2:51410648-51410667 None:intergenic 25.0%
! TCATGAAAGTTGTTCAAATT+TGG + chr1_2:51410657-51410676 Msa0075830:intron 25.0%
!! AAATTCGTGAGAAAATTTTG+AGG - chr1_2:51410782-51410801 None:intergenic 25.0%
! AGCTATTTATTACATGGAAA+TGG - chr1_2:51410983-51411002 None:intergenic 25.0%
! AACTGAAACTAAAATGTGTT+TGG - chr1_2:51411118-51411137 None:intergenic 25.0%
!!! AAACACATTTTAGTTTCAGT+TGG + chr1_2:51411117-51411136 Msa0075830:CDS 25.0%
! AAACTTCATACCTTAGTATT+AGG - chr1_2:51411603-51411622 None:intergenic 25.0%
!!! GCTAAAAGAGTATTTTCTTT+TGG - chr1_2:51411726-51411745 None:intergenic 25.0%
! TAGCATATGAAATAATTTGG+AGG + chr1_2:51411742-51411761 Msa0075830:intron 25.0%
! AGCATATGAAATAATTTGGA+GGG + chr1_2:51411743-51411762 Msa0075830:intron 25.0%
! TTCTGATTGAAGGTAATTAT+TGG - chr1_2:51411789-51411808 None:intergenic 25.0%
! TTCATGTAATATTAAGCAAG+GGG - chr1_2:51411967-51411986 None:intergenic 25.0%
! ATTATAAATGGTTAAGCAGT+TGG - chr1_2:51412633-51412652 None:intergenic 25.0%
!! TTACACCATTGTTTCTTAAA+TGG + chr1_2:51412844-51412863 Msa0075830:intron 25.0%
!! CTATTAGTTTCATAAAAACC+CGG - chr1_2:51413479-51413498 None:intergenic 25.0%
!! TAAGATTTTGCATGATAAAC+AGG + chr1_2:51413631-51413650 Msa0075830:intron 25.0%
!! AAGATTTTGCATGATAAACA+GGG + chr1_2:51413632-51413651 Msa0075830:intron 25.0%
! AAAGCAATATTGTTAAGTTC+CGG - chr1_2:51414327-51414346 None:intergenic 25.0%
!! AGAACTTTTGTGTTATACTA+TGG + chr1_2:51414458-51414477 Msa0075830:intron 25.0%
! TAATAAGAAATGGGAAATTG+GGG - chr1_2:51414589-51414608 None:intergenic 25.0%
! GTAATAAGAAATGGGAAATT+GGG - chr1_2:51414590-51414609 None:intergenic 25.0%
!!! ATTTTTTTTCTCTCCATTGA+TGG + chr1_2:51414631-51414650 Msa0075830:intron 25.0%
! TAGTTACAAAACTCAGAATT+TGG + chr1_2:51414677-51414696 Msa0075830:intron 25.0%
!! ACAAAATTTGAAGTATCTTG+TGG + chr1_2:51414709-51414728 Msa0075830:intron 25.0%
!!! CTTATTTAATTTGAAGCAGT+TGG + chr1_2:51415608-51415627 Msa0075830:three_prime_UTR 25.0%
! TAATTTATCCTGCACAAAAT+AGG + chr1_2:51415711-51415730 Msa0075830:three_prime_UTR 25.0%
AGCAAATTAGCAAGTCAATA+AGG - chr1_2:51409678-51409697 None:intergenic 30.0%
!! TTCTCGTGTTTTTGTCAAAT+GGG - chr1_2:51409896-51409915 None:intergenic 30.0%
!! ATTCTCGTGTTTTTGTCAAA+TGG - chr1_2:51409897-51409916 None:intergenic 30.0%
CTCTCTATGATGAAATCATT+GGG - chr1_2:51409983-51410002 None:intergenic 30.0%
AGAAGAACACATATATTAGG+AGG + chr1_2:51410026-51410045 Msa0075830:intron 30.0%
TTAAGATTTGAACACTAGAC+TGG + chr1_2:51410054-51410073 Msa0075830:intron 30.0%
!!! CGTATTTGGTTTTTGGAAAA+TGG + chr1_2:51410365-51410384 Msa0075830:intron 30.0%
ATCTAAAGACTTGAAAGTAG+TGG - chr1_2:51410492-51410511 None:intergenic 30.0%
AGTTGAACACCTGAAAATTA+TGG + chr1_2:51410520-51410539 Msa0075830:intron 30.0%
ATCTCATTAACCACGTATTT+GGG - chr1_2:51410555-51410574 None:intergenic 30.0%
AATCTCATTAACCACGTATT+TGG - chr1_2:51410556-51410575 None:intergenic 30.0%
!! TTTCATGACAACTTTTAAGG+TGG - chr1_2:51410645-51410664 None:intergenic 30.0%
! TTTGAAGAAAGCAATGGTTT+TGG + chr1_2:51410799-51410818 Msa0075830:CDS 30.0%
!! TCTAATGTCAAGTTGATTGA+AGG + chr1_2:51410928-51410947 Msa0075830:CDS 30.0%
!! AGGTTTTGATGGTAAATCAA+GGG - chr1_2:51411202-51411221 None:intergenic 30.0%
TGTATTTATACGACAAAAGC+AGG + chr1_2:51411302-51411321 Msa0075830:CDS 30.0%
! AGATTTTGTCGCAGAAAATA+TGG + chr1_2:51411440-51411459 Msa0075830:CDS 30.0%
! TCTCATATTATGTTTGCTAC+AGG + chr1_2:51411570-51411589 Msa0075830:CDS 30.0%
GATTGAAGGTAATTATTGGA+AGG - chr1_2:51411785-51411804 None:intergenic 30.0%
TTCAATGACTTTCTGATTGA+AGG - chr1_2:51411799-51411818 None:intergenic 30.0%
CAATCAGAAAGTCATTGAAA+AGG + chr1_2:51411800-51411819 Msa0075830:intron 30.0%
! TTTTCCCATGATACACTTTT+AGG + chr1_2:51411899-51411918 Msa0075830:intron 30.0%
! AAGTCCTAAAAGTGTATCAT+GGG - chr1_2:51411906-51411925 None:intergenic 30.0%
AGATAAACAGACAGTTGAAA+CGG - chr1_2:51412151-51412170 None:intergenic 30.0%
TACAGAAAGAGCTAATAACA+TGG + chr1_2:51412180-51412199 Msa0075830:intron 30.0%
ACAATTTCACTGCAGAATTT+AGG + chr1_2:51412221-51412240 Msa0075830:intron 30.0%
TGATGAATACTCTCAAACAT+CGG + chr1_2:51412374-51412393 Msa0075830:CDS 30.0%
!! TACCTATAATCAGGTTTTGT+TGG - chr1_2:51412504-51412523 None:intergenic 30.0%
ACTGAAGTCAATCTTTAATC+AGG - chr1_2:51412558-51412577 None:intergenic 30.0%
ATCAGGGAGATCATTATAAA+TGG - chr1_2:51412645-51412664 None:intergenic 30.0%
! GTTTTTGACACGAATTTGTA+TGG + chr1_2:51412785-51412804 Msa0075830:intron 30.0%
CTTGACCATTTAAGAAACAA+TGG - chr1_2:51412852-51412871 None:intergenic 30.0%
! GAGCTTTAATGGTTTAAAAG+AGG + chr1_2:51412913-51412932 Msa0075830:intron 30.0%
CTTTAATGGTTTAAAAGAGG+TGG + chr1_2:51412916-51412935 Msa0075830:intron 30.0%
AGAATGTAACACAATCTGTT+AGG - chr1_2:51413196-51413215 None:intergenic 30.0%
!!! AACATTTTGGTTATTTGCAC+AGG + chr1_2:51413374-51413393 Msa0075830:intron 30.0%
TGCAAAAACAAATGAAGTTC+TGG + chr1_2:51413503-51413522 Msa0075830:CDS 30.0%
GCAAAAACAAATGAAGTTCT+GGG + chr1_2:51413504-51413523 Msa0075830:CDS 30.0%
! AGATTTTGCATGATAAACAG+GGG + chr1_2:51413633-51413652 Msa0075830:intron 30.0%
TATTAAAGCTGGATTGACAA+AGG + chr1_2:51413667-51413686 Msa0075830:CDS 30.0%
ATTTCTGCACAAGATATCAA+CGG - chr1_2:51413823-51413842 None:intergenic 30.0%
TCTTTCAATTCTCAAGTACA+AGG - chr1_2:51413921-51413940 None:intergenic 30.0%
ACCACATGTCATTATTCATA+TGG + chr1_2:51414101-51414120 Msa0075830:intron 30.0%
TCCATATGAATAATGACATG+TGG - chr1_2:51414105-51414124 None:intergenic 30.0%
!! CATTTCCAACCATGTTTTTA+TGG + chr1_2:51414200-51414219 Msa0075830:intron 30.0%
CTAAGAGAACCATAAAAACA+TGG - chr1_2:51414212-51414231 None:intergenic 30.0%
CTATACTAGATACTAGGTTT+AGG + chr1_2:51414483-51414502 Msa0075830:intron 30.0%
TCTCTATTATTATCAACCCT+TGG + chr1_2:51414525-51414544 Msa0075830:intron 30.0%
! TTATTATCAACCCTTGGTTT+TGG + chr1_2:51414531-51414550 Msa0075830:intron 30.0%
TATTGAATGTCCAAAACCAA+GGG - chr1_2:51414544-51414563 None:intergenic 30.0%
TTATTGAATGTCCAAAACCA+AGG - chr1_2:51414545-51414564 None:intergenic 30.0%
GGTAATAAGAAATGGGAAAT+TGG - chr1_2:51414591-51414610 None:intergenic 30.0%
!! ATGTGGAGATTTTTAGGAAA+AGG + chr1_2:51414880-51414899 Msa0075830:intron 30.0%
!! TGTGGAGATTTTTAGGAAAA+GGG + chr1_2:51414881-51414900 Msa0075830:intron 30.0%
!! TTTTTAGGAAAAGGGGAATT+TGG + chr1_2:51414889-51414908 Msa0075830:intron 30.0%
!! TTTTAGGAAAAGGGGAATTT+GGG + chr1_2:51414890-51414909 Msa0075830:intron 30.0%
! AAAAGACTTGGCTACATTTT+CGG - chr1_2:51414983-51415002 None:intergenic 30.0%
GGATAAGATAGTAAAAGACT+TGG - chr1_2:51414995-51415014 None:intergenic 30.0%
ATCTTATCCATGTGTTATAG+CGG + chr1_2:51415006-51415025 Msa0075830:intron 30.0%
!!! TGGTAGTGGATTTTATACAA+TGG - chr1_2:51415144-51415163 None:intergenic 30.0%
GTTCAAAGAATAAGTAGTAG+TGG - chr1_2:51415164-51415183 None:intergenic 30.0%
CAAGACAATACATGAAATAG+CGG + chr1_2:51415440-51415459 Msa0075830:three_prime_UTR 30.0%
AAGACAATACATGAAATAGC+GGG + chr1_2:51415441-51415460 Msa0075830:three_prime_UTR 30.0%
TTCCTCTGAATATGTACAAA+GGG - chr1_2:51415549-51415568 None:intergenic 30.0%
TTTCCTCTGAATATGTACAA+AGG - chr1_2:51415550-51415569 None:intergenic 30.0%
! AACTTTTCAAACTTTTCGCA+TGG + chr1_2:51415678-51415697 Msa0075830:three_prime_UTR 30.0%
!! AATACAAATTGGTCTTTGGC+TGG - chr1_2:51409030-51409049 None:intergenic 35.0%
GACGTGTTAAATAAGCAGTT+TGG + chr1_2:51409087-51409106 Msa0075830:five_prime_UTR 35.0%
TAAAAAGGTCGAAGTCATAG+TGG - chr1_2:51409356-51409375 None:intergenic 35.0%
CGAGCATCACATTGTAAAAA+TGG + chr1_2:51409551-51409570 Msa0075830:intron 35.0%
CTACCCTTGTCTCTAAATAT+AGG + chr1_2:51409868-51409887 Msa0075830:intron 35.0%
GGTCCTATATTTAGAGACAA+GGG - chr1_2:51409874-51409893 None:intergenic 35.0%
!! TCTCGTGTTTTTGTCAAATG+GGG - chr1_2:51409895-51409914 None:intergenic 35.0%
GCTCTCTATGATGAAATCAT+TGG - chr1_2:51409984-51410003 None:intergenic 35.0%
! ATTTGAACACTAGACTGGTT+GGG + chr1_2:51410059-51410078 Msa0075830:intron 35.0%
! AATCGTGTGTATCTAAAACC+AGG + chr1_2:51410328-51410347 Msa0075830:intron 35.0%
! ATCGTGTGTATCTAAAACCA+GGG + chr1_2:51410329-51410348 Msa0075830:intron 35.0%
AAAACCAAATACGGGATAAC+CGG - chr1_2:51410358-51410377 None:intergenic 35.0%
!!! GTTATCCCGTATTTGGTTTT+TGG + chr1_2:51410358-51410377 Msa0075830:intron 35.0%
!! GGTTTTTGGAAAATGGTACT+TGG + chr1_2:51410372-51410391 Msa0075830:intron 35.0%
TTTAAGAGAGAGTTTGAGAG+AGG + chr1_2:51410414-51410433 Msa0075830:intron 35.0%
TTAACAGCTACTGAAGTTAG+AGG - chr1_2:51410454-51410473 None:intergenic 35.0%
! CGTGGTTAACCATAATTTTC+AGG - chr1_2:51410532-51410551 None:intergenic 35.0%
GTCAACACAGTTTAAATGAG+TGG - chr1_2:51410623-51410642 None:intergenic 35.0%
GCATAGACGAGTAATTTCTT+TGG - chr1_2:51410760-51410779 None:intergenic 35.0%
CACGAATTTGAAGAAAGCAA+TGG + chr1_2:51410793-51410812 Msa0075830:CDS 35.0%
!!! AAGAAAGCAATGGTTTTGGA+TGG + chr1_2:51410803-51410822 Msa0075830:CDS 35.0%
AAACTACTCCAATCATGCTT+AGG - chr1_2:51410844-51410863 None:intergenic 35.0%
ATAAAAATGCTGAGTTGCAG+AGG + chr1_2:51410872-51410891 Msa0075830:CDS 35.0%
!!! CACATTTTAGTTTCAGTTGG+AGG + chr1_2:51411120-51411139 Msa0075830:CDS 35.0%
TATTCCTTTCCAGGAATATC+AGG - chr1_2:51411159-51411178 None:intergenic 35.0%
TCTATTGCATATTCCTTTCC+AGG - chr1_2:51411168-51411187 None:intergenic 35.0%
!! CAGGTTTTGATGGTAAATCA+AGG - chr1_2:51411203-51411222 None:intergenic 35.0%
!! GAGTTTGCTGGTATCTTTAA+TGG + chr1_2:51411261-51411280 Msa0075830:CDS 35.0%
!! AGGTATTGAATTCCATACTG+AGG + chr1_2:51411470-51411489 Msa0075830:CDS 35.0%
!! GATGCTAAAAGAGTATTTGC+TGG - chr1_2:51411676-51411695 None:intergenic 35.0%
! CAAGTCCTAAAAGTGTATCA+TGG - chr1_2:51411907-51411926 None:intergenic 35.0%
TTAAAATTAGCCAACCCTCA+AGG - chr1_2:51412059-51412078 None:intergenic 35.0%
AATTCCACATGCTTCTTAGT+TGG + chr1_2:51412077-51412096 Msa0075830:intron 35.0%
! TAGTTGGCTCAATTTCCATA+CGG + chr1_2:51412093-51412112 Msa0075830:intron 35.0%
TGCTAAAGATGGATCAATAG+AGG + chr1_2:51412268-51412287 Msa0075830:CDS 35.0%
!! TTGAGAGTATTCATCAACCT+GGG - chr1_2:51412370-51412389 None:intergenic 35.0%
!! TTTGAGAGTATTCATCAACC+TGG - chr1_2:51412371-51412390 None:intergenic 35.0%
!! AAACATCGGTTCCTTCAATT+TGG + chr1_2:51412388-51412407 Msa0075830:CDS 35.0%
!! AACATCGGTTCCTTCAATTT+GGG + chr1_2:51412389-51412408 Msa0075830:CDS 35.0%
AGCCAACAAAACCTGATTAT+AGG + chr1_2:51412499-51412518 Msa0075830:CDS 35.0%
! ATGCTTGTTAAGCAAGATCA+GGG - chr1_2:51412661-51412680 None:intergenic 35.0%
! AATGCTTGTTAAGCAAGATC+AGG - chr1_2:51412662-51412681 None:intergenic 35.0%
GGTTTAAAAGAGGTGGAAAA+AGG + chr1_2:51412923-51412942 Msa0075830:intron 35.0%
GGAAAAAGGAAAATGACTAG+AGG + chr1_2:51412937-51412956 Msa0075830:intron 35.0%
GTGCAAAAAATGAGATGACT+AGG - chr1_2:51413082-51413101 None:intergenic 35.0%
ATTGAATGGCAGCTATAATC+TGG + chr1_2:51413146-51413165 Msa0075830:intron 35.0%
ATGTAACACAATCTGTTAGG+AGG - chr1_2:51413193-51413212 None:intergenic 35.0%
CAGAAGATCATTGATCTCAA+TGG - chr1_2:51413319-51413338 None:intergenic 35.0%
! ACGTCTACACAGCAAATTTT+AGG + chr1_2:51413421-51413440 Msa0075830:CDS 35.0%
ACAAAAACCTGCACAATTTC+AGG - chr1_2:51413555-51413574 None:intergenic 35.0%
! TTTGCAGTTGCTATTAAAGC+TGG + chr1_2:51413656-51413675 Msa0075830:CDS 35.0%
CTTGATTTACCTGTGAATCA+AGG - chr1_2:51413781-51413800 None:intergenic 35.0%
CTTGATTCACAGGTAAATCA+AGG + chr1_2:51413779-51413798 Msa0075830:intron 35.0%
GAAGTCGACGTATTCATTAA+TGG - chr1_2:51413893-51413912 None:intergenic 35.0%
AATTCTCAAGTACAAGGCAA+CGG - chr1_2:51413915-51413934 None:intergenic 35.0%
GAGAACCATAAAAACATGGT+TGG - chr1_2:51414208-51414227 None:intergenic 35.0%
AGTATTTCACCCTTACCTTA+AGG - chr1_2:51414384-51414403 None:intergenic 35.0%
ATGGCACTATACTAGATACT+AGG + chr1_2:51414477-51414496 Msa0075830:intron 35.0%
ATCTTGTGGTAAGCAAGTTT+AGG + chr1_2:51414723-51414742 Msa0075830:intron 35.0%
TCTTGTGGTAAGCAAGTTTA+GGG + chr1_2:51414724-51414743 Msa0075830:intron 35.0%
! GTCTGTAATGGAGAAATTTC+AGG + chr1_2:51414746-51414765 Msa0075830:intron 35.0%
! TTCAGCATGTGGAGATTTTT+AGG + chr1_2:51414874-51414893 Msa0075830:intron 35.0%
!! GTGGAGATTTTTAGGAAAAG+GGG + chr1_2:51414882-51414901 Msa0075830:intron 35.0%
TTTAGGAAAAGGGGAATTTG+GGG + chr1_2:51414891-51414910 Msa0075830:intron 35.0%
AGAATAAGTAGTAGTGGTAG+TGG - chr1_2:51415158-51415177 None:intergenic 35.0%
!!! ACATACATTCCTGCCATTTT+GGG - chr1_2:51415224-51415243 None:intergenic 35.0%
!! AACATACATTCCTGCCATTT+TGG - chr1_2:51415225-51415244 None:intergenic 35.0%
TTACCAATGCAACATGTTTC+CGG + chr1_2:51415272-51415291 Msa0075830:intron 35.0%
TATTAGAACATGACAAACGC+CGG - chr1_2:51415294-51415313 None:intergenic 35.0%
!!! TTGCTTTTTCGAATGATCTC+CGG + chr1_2:51415405-51415424 Msa0075830:three_prime_UTR 35.0%
AGACAATACATGAAATAGCG+GGG + chr1_2:51415442-51415461 Msa0075830:three_prime_UTR 35.0%
TGAATATGTACAAAGGGATG+AGG - chr1_2:51415543-51415562 None:intergenic 35.0%
ATCCCTTTGTACATATTCAG+AGG + chr1_2:51415544-51415563 Msa0075830:three_prime_UTR 35.0%
TATTCAGAGGAAATCTCATG+AGG + chr1_2:51415557-51415576 Msa0075830:three_prime_UTR 35.0%
ATTCAGAGGAAATCTCATGA+GGG + chr1_2:51415558-51415577 Msa0075830:three_prime_UTR 35.0%
! AAACTTTTCGCATGGAAAAG+TGG + chr1_2:51415686-51415705 Msa0075830:three_prime_UTR 35.0%
TTATCCTGCACAAAATAGGA+TGG + chr1_2:51415715-51415734 Msa0075830:three_prime_UTR 35.0%
TATCCTGCACAAAATAGGAT+GGG + chr1_2:51415716-51415735 Msa0075830:three_prime_UTR 35.0%
ACTAATGAAGCAAGCAGCAA+TGG + chr1_2:51409137-51409156 Msa0075830:exon 40.0%
TAAGGGAGAAGAACAAGAGA+GGG - chr1_2:51409175-51409194 None:intergenic 40.0%
! AGAGTGTTTCGGGTAAGTAA+GGG - chr1_2:51409192-51409211 None:intergenic 40.0%
!! TGGTGAAGAAGAGAGTGTTT+CGG - chr1_2:51409203-51409222 None:intergenic 40.0%
! ACGAGAAAATGGGAAGGTTT+TGG - chr1_2:51409223-51409242 None:intergenic 40.0%
GAGTGAAGGAACGAGAAAAT+GGG - chr1_2:51409233-51409252 None:intergenic 40.0%
AGAGTGAAGGAACGAGAAAA+TGG - chr1_2:51409234-51409253 None:intergenic 40.0%
! AGATTGAGAGACTAGGGTTT+TGG - chr1_2:51409274-51409293 None:intergenic 40.0%
! GACTTCGACCTTTTTACCAT+CGG + chr1_2:51409360-51409379 Msa0075830:CDS 40.0%
! TCACGCTTTGCTTCCAATTT+TGG + chr1_2:51409408-51409427 Msa0075830:CDS 40.0%
CATCTGCTTTCAGAAAGACA+AGG - chr1_2:51409737-51409756 None:intergenic 40.0%
GGGTCCTATATTTAGAGACA+AGG - chr1_2:51409875-51409894 None:intergenic 40.0%
GATTTGAACACTAGACTGGT+TGG + chr1_2:51410058-51410077 Msa0075830:intron 40.0%
!! TTCTTTGGCTTGTTGAAGTG+TGG + chr1_2:51410183-51410202 Msa0075830:intron 40.0%
CTTGTTGAAGTGTGGTATTG+TGG + chr1_2:51410191-51410210 Msa0075830:intron 40.0%
CACAAAGATATGCATGTCGA+TGG - chr1_2:51410712-51410731 None:intergenic 40.0%
ACAGTGAACCTAAGCATGAT+TGG + chr1_2:51410833-51410852 Msa0075830:CDS 40.0%
! CTCACACAGTTGATGTTGAT+GGG + chr1_2:51411079-51411098 Msa0075830:CDS 40.0%
CCAGGAATATCAGGAATGAA+GGG - chr1_2:51411150-51411169 None:intergenic 40.0%
TCCAGGAATATCAGGAATGA+AGG - chr1_2:51411151-51411170 None:intergenic 40.0%
CATTCCTGATATTCCTGGAA+AGG + chr1_2:51411152-51411171 Msa0075830:CDS 40.0%
!! GCAATCTTCTCAGGTTTTGA+TGG - chr1_2:51411213-51411232 None:intergenic 40.0%
AGAAGATTGCCATTGTTGGT+GGG + chr1_2:51411223-51411242 Msa0075830:CDS 40.0%
AAAGATACCAGCAAACTCCA+AGG - chr1_2:51411259-51411278 None:intergenic 40.0%
TTTGCGAGGATTTGATGAAG+AGG + chr1_2:51411326-51411345 Msa0075830:CDS 40.0%
!! GCAGAAAATATGGCTCTAAG+AGG + chr1_2:51411450-51411469 Msa0075830:CDS 40.0%
! CTCTCTTTAAAGACCAGCAA+AGG + chr1_2:51411531-51411550 Msa0075830:CDS 40.0%
AGGACGCAAACCTAATACTA+AGG + chr1_2:51411590-51411609 Msa0075830:CDS 40.0%
AATATTAAGCAAGGGGCTGA+AGG - chr1_2:51411960-51411979 None:intergenic 40.0%
! TTCACTGCAGAATTTAGGAC+TGG + chr1_2:51412226-51412245 Msa0075830:intron 40.0%
! AATTTAGGACTGGAGTCTGT+TGG + chr1_2:51412236-51412255 Msa0075830:CDS 40.0%
GGTGTGAAGATTGCTAAAGA+TGG + chr1_2:51412257-51412276 Msa0075830:CDS 40.0%
ATTCATCAACCTGGGTGAAT+AGG - chr1_2:51412362-51412381 None:intergenic 40.0%
GTTCCTTCAATTTGGGCAAT+CGG + chr1_2:51412396-51412415 Msa0075830:CDS 40.0%
GATGATATACAACCACACAC+TGG - chr1_2:51412583-51412602 None:intergenic 40.0%
TGACACGAATTTGTATGGTG+AGG + chr1_2:51412790-51412809 Msa0075830:intron 40.0%
! CATCATGACGAGAGCTTTAA+TGG + chr1_2:51412902-51412921 Msa0075830:intron 40.0%
! AGCAAATTTTAGGCCACTGA+AGG + chr1_2:51413431-51413450 Msa0075830:CDS 40.0%
AGTTTCATAAAAACCCGGTC+TGG - chr1_2:51413474-51413493 None:intergenic 40.0%
CTCTTTCGAATCTTCCTAGT+GGG - chr1_2:51413758-51413777 None:intergenic 40.0%
AAGATATCAACGGAAGACAC+TGG - chr1_2:51413813-51413832 None:intergenic 40.0%
TAGTATGCTGAACAGAATGC+AGG - chr1_2:51413849-51413868 None:intergenic 40.0%
AAAAGAAAACTTCCCTGTGC+AGG + chr1_2:51413975-51413994 Msa0075830:intron 40.0%
TCAACAGACCCAAGTAATCA+TGG - chr1_2:51414001-51414020 None:intergenic 40.0%
ATTGCTAGACTTCTTCGTGA+GGG - chr1_2:51414053-51414072 None:intergenic 40.0%
TATTGCTAGACTTCTTCGTG+AGG - chr1_2:51414054-51414073 None:intergenic 40.0%
TGGTTCTCTTAGCATGCTAT+TGG + chr1_2:51414220-51414239 Msa0075830:intron 40.0%
! TCTCCATTGATGGTTCATGT+GGG + chr1_2:51414641-51414660 Msa0075830:intron 40.0%
! AGCAAGTTTAGGGTCTGTAA+TGG + chr1_2:51414734-51414753 Msa0075830:intron 40.0%
!! GATTAAGTTGGTTCAGCATG+TGG + chr1_2:51414863-51414882 Msa0075830:intron 40.0%
TTAGGAAAAGGGGAATTTGG+GGG + chr1_2:51414892-51414911 Msa0075830:intron 40.0%
CATATTGCCGCTATAACACA+TGG - chr1_2:51415016-51415035 None:intergenic 40.0%
AAGAAACTCCCAACCCAAAA+TGG + chr1_2:51415208-51415227 Msa0075830:intron 40.0%
GTAAGGATACAAGAGACTAC+AGG - chr1_2:51415256-51415275 None:intergenic 40.0%
! GGAAACATGTTGCATTGGTA+AGG - chr1_2:51415273-51415292 None:intergenic 40.0%
! AAAAGGGCGGAATGGAATTT+TGG + chr1_2:51415477-51415496 Msa0075830:three_prime_UTR 40.0%
! AAAGGGCGGAATGGAATTTT+GGG + chr1_2:51415478-51415497 Msa0075830:three_prime_UTR 40.0%
ATCCTGCACAAAATAGGATG+GGG + chr1_2:51415717-51415736 Msa0075830:three_prime_UTR 40.0%
GTAAGGGAGAAGAACAAGAG+AGG - chr1_2:51409176-51409195 None:intergenic 45.0%
!! GAGAGTGTTTCGGGTAAGTA+AGG - chr1_2:51409193-51409212 None:intergenic 45.0%
!! GGTGAAGAAGAGAGTGTTTC+GGG - chr1_2:51409202-51409221 None:intergenic 45.0%
GAAGGAACGAGAAAATGGGA+AGG - chr1_2:51409229-51409248 None:intergenic 45.0%
! TTTTGGTGGAGAGAGAAGGT+GGG - chr1_2:51409257-51409276 None:intergenic 45.0%
!! TTGAGAGACTAGGGTTTTGG+TGG - chr1_2:51409271-51409290 None:intergenic 45.0%
TGGAGGAGATTGAGAGACTA+GGG - chr1_2:51409280-51409299 None:intergenic 45.0%
!! TCGAAGTCATAGTGGATGGT+GGG - chr1_2:51409348-51409367 None:intergenic 45.0%
! AAGGTCGAAGTCATAGTGGA+TGG - chr1_2:51409352-51409371 None:intergenic 45.0%
AGCAGCGTTAGCACCAAAAT+TGG - chr1_2:51409424-51409443 None:intergenic 45.0%
TCCGTTCTCCACTATCTCAT+CGG + chr1_2:51409455-51409474 Msa0075830:CDS 45.0%
!! TCCGATGAGATAGTGGAGAA+CGG - chr1_2:51409459-51409478 None:intergenic 45.0%
ACTATCTCATCGGATACCAC+CGG + chr1_2:51409465-51409484 Msa0075830:CDS 45.0%
! GTATCTAAAACCAGGGAAGC+CGG + chr1_2:51410336-51410355 Msa0075830:intron 45.0%
ATTAACCACGTATTTGGGCG+TGG - chr1_2:51410550-51410569 None:intergenic 45.0%
TTGTGCAGCTGTGTAATACG+TGG + chr1_2:51410727-51410746 Msa0075830:intron 45.0%
AGAATCATCCCACCTTTCCA+CGG - chr1_2:51410954-51410973 None:intergenic 45.0%
GGAAAGGTGGGATGATTCTT+TGG + chr1_2:51410955-51410974 Msa0075830:intron 45.0%
CCATCAACATCAACTGTGTG+AGG - chr1_2:51411081-51411100 None:intergenic 45.0%
! CCTCACACAGTTGATGTTGA+TGG + chr1_2:51411078-51411097 Msa0075830:CDS 45.0%
CCCTTCATTCCTGATATTCC+TGG + chr1_2:51411147-51411166 Msa0075830:CDS 45.0%
CCAACAATGGCAATCTTCTC+AGG - chr1_2:51411222-51411241 None:intergenic 45.0%
CCTGAGAAGATTGCCATTGT+TGG + chr1_2:51411219-51411238 Msa0075830:CDS 45.0%
GAGAAGATTGCCATTGTTGG+TGG + chr1_2:51411222-51411241 Msa0075830:CDS 45.0%
GAAGATTGCCATTGTTGGTG+GGG + chr1_2:51411224-51411243 Msa0075830:CDS 45.0%
! AAGATTGCCATTGTTGGTGG+GGG + chr1_2:51411225-51411244 Msa0075830:CDS 45.0%
AATGTAACCCCCACCAACAA+TGG - chr1_2:51411235-51411254 None:intergenic 45.0%
TACATTGCCTTGGAGTTTGC+TGG + chr1_2:51411249-51411268 Msa0075830:CDS 45.0%
GATGAAGAGGTAAGCAAGCA+TGG + chr1_2:51411339-51411358 Msa0075830:intron 45.0%
GTCTCCTGTAGCTATCACTA+AGG + chr1_2:51411494-51411513 Msa0075830:CDS 45.0%
!! AAAGACCAGCAAAGGTACTG+TGG + chr1_2:51411539-51411558 Msa0075830:CDS 45.0%
ATTGAACTCCAGTGTCCTTG+AGG + chr1_2:51412041-51412060 Msa0075830:intron 45.0%
TTGAACTCCAGTGTCCTTGA+GGG + chr1_2:51412042-51412061 Msa0075830:intron 45.0%
! TGAGCCAACTAAGAAGCATG+TGG - chr1_2:51412084-51412103 None:intergenic 45.0%
TCAAGAACATGCAAGCCGTA+TGG - chr1_2:51412111-51412130 None:intergenic 45.0%
! AGTGTTACTCCTATTCACCC+AGG + chr1_2:51412350-51412369 Msa0075830:intron 45.0%
TCTCCGATTGCCCAAATTGA+AGG - chr1_2:51412402-51412421 None:intergenic 45.0%
CAATCGGAGATGCTACAAAC+AGG + chr1_2:51412412-51412431 Msa0075830:CDS 45.0%
! TCTCACTCCAGTTGCTTTGA+TGG + chr1_2:51412440-51412459 Msa0075830:CDS 45.0%
! ACTCCAGTTGCTTTGATGGA+GGG + chr1_2:51412444-51412463 Msa0075830:CDS 45.0%
! AACTCCTCCAATTGGTGGTT+GGG - chr1_2:51413253-51413272 None:intergenic 45.0%
! CAATGGATTTAGCCTGCCAT+AGG - chr1_2:51413302-51413321 None:intergenic 45.0%
GCACAGGCTGTAGAACAATA+TGG + chr1_2:51413390-51413409 Msa0075830:intron 45.0%
TTCTGGGTTTGCACATGTGT+GGG + chr1_2:51413520-51413539 Msa0075830:CDS 45.0%
TGATGCTCCTGAAATTGTGC+AGG + chr1_2:51413545-51413564 Msa0075830:CDS 45.0%
GCAGACTTTGATGCTACTGT+AGG + chr1_2:51413689-51413708 Msa0075830:CDS 45.0%
GCTCTTTCGAATCTTCCTAG+TGG - chr1_2:51413759-51413778 None:intergenic 45.0%
TCGAAAGAGCCTTGATTCAC+AGG + chr1_2:51413769-51413788 Msa0075830:CDS 45.0%
AAGTAATCATGGCCTGCACA+GGG - chr1_2:51413990-51414009 None:intergenic 45.0%
TGTGCAGGCCATGATTACTT+GGG + chr1_2:51413990-51414009 Msa0075830:intron 45.0%
AGACTTCTTCGTGAGGGAAA+GGG - chr1_2:51414047-51414066 None:intergenic 45.0%
TAGACTTCTTCGTGAGGGAA+AGG - chr1_2:51414048-51414067 None:intergenic 45.0%
! ACAGCTTTTGCTTCAGAGTC+TGG - chr1_2:51414302-51414321 None:intergenic 45.0%
! TCTGAAGCAAAAGCTGTAGC+CGG + chr1_2:51414305-51414324 Msa0075830:CDS 45.0%
AGAAACTTGCCGATGCCTTA+AGG + chr1_2:51414366-51414385 Msa0075830:three_prime_UTR 45.0%
TTGCCGATGCCTTAAGGTAA+GGG + chr1_2:51414372-51414391 Msa0075830:intron 45.0%
TCACCCTTACCTTAAGGCAT+CGG - chr1_2:51414378-51414397 None:intergenic 45.0%
TAGGTTTAGGTGCTCTCTCT+TGG + chr1_2:51414496-51414515 Msa0075830:intron 45.0%
! CTCTCCATTGATGGTTCATG+TGG + chr1_2:51414640-51414659 Msa0075830:intron 45.0%
TGACCCACATGAACCATCAA+TGG - chr1_2:51414647-51414666 None:intergenic 45.0%
TAGGAAAAGGGGAATTTGGG+GGG + chr1_2:51414893-51414912 Msa0075830:intron 45.0%
GGAATTTGGGGGGTAGATTA+CGG + chr1_2:51414903-51414922 Msa0075830:intron 45.0%
GAATTTGGGGGGTAGATTAC+GGG + chr1_2:51414904-51414923 Msa0075830:intron 45.0%
GTAGATTACGGGTAACTGAG+AGG + chr1_2:51414915-51414934 Msa0075830:intron 45.0%
!!! CATTCCTGCCATTTTGGGTT+GGG - chr1_2:51415219-51415238 None:intergenic 45.0%
!!! ACATTCCTGCCATTTTGGGT+TGG - chr1_2:51415220-51415239 None:intergenic 45.0%
TGTCTTGAAAGCTCAGTTGC+CGG - chr1_2:51415427-51415446 None:intergenic 45.0%
GGGGTGAGCTCATTTGAAAA+GGG + chr1_2:51415461-51415480 Msa0075830:three_prime_UTR 45.0%
GTGAGCTCATTTGAAAAGGG+CGG + chr1_2:51415464-51415483 Msa0075830:three_prime_UTR 45.0%
CTCATTTGAAAAGGGCGGAA+TGG + chr1_2:51415469-51415488 Msa0075830:three_prime_UTR 45.0%
! TACCCCATCCTATTTTGTGC+AGG - chr1_2:51415722-51415741 None:intergenic 45.0%
!! AGAAAAAAAATTAAAAAAAA+TGG - chr1_2:51414622-51414641 None:intergenic 5.0%
!!! TTTAATTTTATATCATTTTT+TGG - chr1_2:51415049-51415068 None:intergenic 5.0%
!! GTTTTGGTGGAGAGAGAAGG+TGG - chr1_2:51409258-51409277 None:intergenic 50.0%
!! AGGGTTTTGGTGGAGAGAGA+AGG - chr1_2:51409261-51409280 None:intergenic 50.0%
GTGGAGGAGATTGAGAGACT+AGG - chr1_2:51409281-51409300 None:intergenic 50.0%
!! CGAAGTCATAGTGGATGGTG+GGG - chr1_2:51409347-51409366 None:intergenic 50.0%
!! GTCGAAGTCATAGTGGATGG+TGG - chr1_2:51409349-51409368 None:intergenic 50.0%
! GACCTTTTTACCATCGGTGC+CGG + chr1_2:51409366-51409385 Msa0075830:CDS 50.0%
!! TTCCGGCACCGATGGTAAAA+AGG - chr1_2:51409371-51409390 None:intergenic 50.0%
TGGAAGCAAAGCGTGAAGCA+CGG - chr1_2:51409404-51409423 None:intergenic 50.0%
GGTGGTATCCGATGAGATAG+TGG - chr1_2:51409466-51409485 None:intergenic 50.0%
! CACTAGACTGGTTGGGTTTG+TGG + chr1_2:51410066-51410085 Msa0075830:intron 50.0%
! AGGAGTGGGTTTACTGAGTC+AGG + chr1_2:51410253-51410272 Msa0075830:intron 50.0%
GAAGCCGGTTATCCCGTATT+TGG + chr1_2:51410351-51410370 Msa0075830:intron 50.0%
GTTAACCACGCCCAAATACG+TGG + chr1_2:51410542-51410561 Msa0075830:intron 50.0%
!! GTCAAGTTGATTGAAGGCCG+TGG + chr1_2:51410934-51410953 Msa0075830:CDS 50.0%
GTTGATTGAAGGCCGTGGAA+AGG + chr1_2:51410939-51410958 Msa0075830:CDS 50.0%
ATTGAAGGCCGTGGAAAGGT+GGG + chr1_2:51410943-51410962 Msa0075830:intron 50.0%
! CGACAAAAGCAGGTTTTGCG+AGG + chr1_2:51411312-51411331 Msa0075830:CDS 50.0%
CTACAGGAGACTCCTCAGTA+TGG - chr1_2:51411485-51411504 None:intergenic 50.0%
GCTGCCTTAGTGATAGCTAC+AGG - chr1_2:51411501-51411520 None:intergenic 50.0%
GCTATCACTAAGGCAGCTGA+TGG + chr1_2:51411504-51411523 Msa0075830:CDS 50.0%
!! ACCAGCAAAGGTACTGTGGA+TGG + chr1_2:51411543-51411562 Msa0075830:CDS 50.0%
ACCATCCACAGTACCTTTGC+TGG - chr1_2:51411547-51411566 None:intergenic 50.0%
! CACTCCAGTTGCTTTGATGG+AGG + chr1_2:51412443-51412462 Msa0075830:CDS 50.0%
ACTCCCTCCATCAAAGCAAC+TGG - chr1_2:51412450-51412469 None:intergenic 50.0%
! AGTTGCTTTGATGGAGGGAG+TGG + chr1_2:51412449-51412468 Msa0075830:CDS 50.0%
TGACTTCAGTGACCAGTGTG+TGG + chr1_2:51412568-51412587 Msa0075830:intron 50.0%
GCAGCAACTACAACAACCAC+CGG - chr1_2:51413027-51413046 None:intergenic 50.0%
GTGTTCTCCCAACCACCAAT+TGG + chr1_2:51413243-51413262 Msa0075830:CDS 50.0%
TTCTCCCAACCACCAATTGG+AGG + chr1_2:51413246-51413265 Msa0075830:CDS 50.0%
! CAACTCCTCCAATTGGTGGT+TGG - chr1_2:51413254-51413273 None:intergenic 50.0%
CAACCACCAATTGGAGGAGT+TGG + chr1_2:51413252-51413271 Msa0075830:CDS 50.0%
AGACCAACTCCTCCAATTGG+TGG - chr1_2:51413258-51413277 None:intergenic 50.0%
GTGAGACCAACTCCTCCAAT+TGG - chr1_2:51413261-51413280 None:intergenic 50.0%
AGGAGCAGGTGAATGACCTA+TGG + chr1_2:51413283-51413302 Msa0075830:intron 50.0%
! GTTCTGGGTTTGCACATGTG+TGG + chr1_2:51413519-51413538 Msa0075830:CDS 50.0%
TCTGGGTTTGCACATGTGTG+GGG + chr1_2:51413521-51413540 Msa0075830:CDS 50.0%
CTGAGGAGTTTGTCACCATG+AGG + chr1_2:51413729-51413748 Msa0075830:CDS 50.0%
CAAGTAATCATGGCCTGCAC+AGG - chr1_2:51413991-51414010 None:intergenic 50.0%
CTGTGCAGGCCATGATTACT+TGG + chr1_2:51413989-51414008 Msa0075830:intron 50.0%
GACTTCTTCGTGAGGGAAAG+GGG - chr1_2:51414046-51414065 None:intergenic 50.0%
!! AAGGCATCGGCAAGTTTCTC+TGG - chr1_2:51414365-51414384 None:intergenic 50.0%
CTTGCCGATGCCTTAAGGTA+AGG + chr1_2:51414371-51414390 Msa0075830:intron 50.0%
AACTCCCAACCCAAAATGGC+AGG + chr1_2:51415212-51415231 Msa0075830:intron 50.0%
ACGCCGGAAACATGTTGCAT+TGG - chr1_2:51415278-51415297 None:intergenic 50.0%
CGGGGTGAGCTCATTTGAAA+AGG + chr1_2:51415460-51415479 Msa0075830:three_prime_UTR 50.0%
GTTGGAGTTGAGACACAGCA+TGG + chr1_2:51415626-51415645 Msa0075830:three_prime_UTR 50.0%
GCTCGCACGCACGCTATATT+TGG - chr1_2:51408994-51409013 None:intergenic 55.0%
GAGAGAAGGTGGGAGAGTGA+AGG - chr1_2:51409247-51409266 None:intergenic 55.0%
! GTTTTGCGATTCAGCGCGGA+CGG - chr1_2:51409316-51409335 None:intergenic 55.0%
GTCCGCGCTGAATCGCAAAA+CGG + chr1_2:51409315-51409334 Msa0075830:CDS 55.0%
!! TTTACCATCGGTGCCGGAAG+CGG + chr1_2:51409372-51409391 Msa0075830:CDS 55.0%
ATCTCATCGGATACCACCGG+AGG + chr1_2:51409468-51409487 Msa0075830:CDS 55.0%
GCTGAGTTGCAGAGGCTTAC+TGG + chr1_2:51410880-51410899 Msa0075830:CDS 55.0%
GATTGAAGGCCGTGGAAAGG+TGG + chr1_2:51410942-51410961 Msa0075830:intron 55.0%
TGGTGGGGGTTACATTGCCT+TGG + chr1_2:51411239-51411258 Msa0075830:CDS 55.0%
ACTCCAGTGTCCTTGAGGGT+TGG + chr1_2:51412046-51412065 Msa0075830:intron 55.0%
TAGCCAACCCTCAAGGACAC+TGG - chr1_2:51412052-51412071 None:intergenic 55.0%
!! TGTGTGATCGAGCTTGCTGC+CGG + chr1_2:51413005-51413024 Msa0075830:intron 55.0%
! TGGAGGAGTTGGTCTCACAG+AGG + chr1_2:51413263-51413282 Msa0075830:CDS 55.0%
! AGTTGGTCTCACAGAGGAGC+AGG + chr1_2:51413269-51413288 Msa0075830:CDS 55.0%
GCAGGTGAATGACCTATGGC+AGG + chr1_2:51413287-51413306 Msa0075830:intron 55.0%
CAAACTCCTCAGCTGCGGTT+GGG - chr1_2:51413721-51413740 None:intergenic 55.0%
ACAAACTCCTCAGCTGCGGT+TGG - chr1_2:51413722-51413741 None:intergenic 55.0%
GGTGACAAACTCCTCAGCTG+CGG - chr1_2:51413726-51413745 None:intergenic 55.0%
TCACCATGAGGACTCCCACT+AGG + chr1_2:51413741-51413760 Msa0075830:CDS 55.0%
CTTCCTAGTGGGAGTCCTCA+TGG - chr1_2:51413747-51413766 None:intergenic 55.0%
!! CGCCGTTTTGCGATTCAGCG+CGG - chr1_2:51409320-51409339 None:intergenic 60.0%
! TCGGATACCACCGGAGGTGT+CGG + chr1_2:51409474-51409493 Msa0075830:CDS 60.0%
! TACGGGATAACCGGCTTCCC+TGG - chr1_2:51410349-51410368 None:intergenic 60.0%
GGTTGGGAGAACACAGCAGC+AGG - chr1_2:51413237-51413256 None:intergenic 60.0%
CACTGAAGGCCACCCTCTCT+GGG + chr1_2:51413445-51413464 Msa0075830:CDS 60.0%
CATTCACCCAACCGCAGCTG+AGG + chr1_2:51413712-51413731 Msa0075830:CDS 60.0%
TGAGGGAAAGGGGTGACAGC+AGG - chr1_2:51414036-51414055 None:intergenic 60.0%
AGCACGGACACCTCCGCTTC+CGG - chr1_2:51409388-51409407 None:intergenic 65.0%
!! GATACCACCGGAGGTGTCGG+CGG + chr1_2:51409477-51409496 Msa0075830:CDS 65.0%
TTACGTGCCGCCGACACCTC+CGG - chr1_2:51409487-51409506 None:intergenic 65.0%
!! GTGATCGAGCTTGCTGCCGG+TGG + chr1_2:51413008-51413027 Msa0075830:intron 65.0%
CCAGAGAGGGTGGCCTTCAG+TGG - chr1_2:51413447-51413466 None:intergenic 65.0%
CCACTGAAGGCCACCCTCTC+TGG + chr1_2:51413444-51413463 Msa0075830:CDS 65.0%
GTCTGGAAGCCCAGAGAGGG+TGG - chr1_2:51413457-51413476 None:intergenic 65.0%
CCGGTCTGGAAGCCCAGAGA+GGG - chr1_2:51413460-51413479 None:intergenic 65.0%
CCCTCTCTGGGCTTCCAGAC+CGG + chr1_2:51413457-51413476 Msa0075830:CDS 65.0%
CCTCTCTGGGCTTCCAGACC+GGG + chr1_2:51413458-51413477 Msa0075830:CDS 65.0%
! ACGGCGAAAGTGCGGCGTGG+AGG - chr1_2:51409297-51409316 None:intergenic 70.0%
CAGCGCGGACGGCGAAAGTG+CGG - chr1_2:51409305-51409324 None:intergenic 70.0%
!! ACCATCGGTGCCGGAAGCGG+AGG + chr1_2:51409375-51409394 Msa0075830:CDS 70.0%
! ACCTCCGCTTCCGGCACCGA+TGG - chr1_2:51409379-51409398 None:intergenic 70.0%
CCCGGTCTGGAAGCCCAGAG+AGG - chr1_2:51413461-51413480 None:intergenic 70.0%
! CGGACGGCGAAAGTGCGGCG+TGG - chr1_2:51409300-51409319 None:intergenic 75.0%
! CGTGCCGCCGACACCTCCGG+TGG - chr1_2:51409484-51409503 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 51408975 51415769 51408975 ID=Msa0075830;Name=Msa0075830
chr1_2 mRNA 51408975 51415769 51408975 ID=Msa0075830-mRNA-1;Parent=Msa0075830;Name=Msa0075830-mRNA-1;_AED=0.08;_eAED=0.08;_QI=166|1|1|1|0.9|0.81|11|420|553
chr1_2 exon 51408975 51409502 51408975 ID=Msa0075830-mRNA-1:exon:15835;Parent=Msa0075830-mRNA-1
chr1_2 exon 51410735 51410960 51410735 ID=Msa0075830-mRNA-1:exon:15836;Parent=Msa0075830-mRNA-1
chr1_2 exon 51411069 51411347 51411069 ID=Msa0075830-mRNA-1:exon:15837;Parent=Msa0075830-mRNA-1
chr1_2 exon 51411435 51411611 51411435 ID=Msa0075830-mRNA-1:exon:15838;Parent=Msa0075830-mRNA-1
chr1_2 exon 51412236 51412289 51412236 ID=Msa0075830-mRNA-1:exon:15839;Parent=Msa0075830-mRNA-1
chr1_2 exon 51412372 51412520 51412372 ID=Msa0075830-mRNA-1:exon:15840;Parent=Msa0075830-mRNA-1
chr1_2 exon 51413227 51413290 51413227 ID=Msa0075830-mRNA-1:exon:15841;Parent=Msa0075830-mRNA-1
chr1_2 exon 51413396 51413566 51413396 ID=Msa0075830-mRNA-1:exon:15842;Parent=Msa0075830-mRNA-1
chr1_2 exon 51413653 51413790 51413653 ID=Msa0075830-mRNA-1:exon:15843;Parent=Msa0075830-mRNA-1
chr1_2 exon 51414293 51414387 51414293 ID=Msa0075830-mRNA-1:exon:15844;Parent=Msa0075830-mRNA-1
chr1_2 exon 51415403 51415769 51415403 ID=Msa0075830-mRNA-1:exon:15845;Parent=Msa0075830-mRNA-1
chr1_2 five_prime_UTR 51408975 51409140 51408975 ID=Msa0075830-mRNA-1:five_prime_utr;Parent=Msa0075830-mRNA-1
chr1_2 CDS 51409141 51409502 51409141 ID=Msa0075830-mRNA-1:cds;Parent=Msa0075830-mRNA-1
chr1_2 CDS 51410735 51410960 51410735 ID=Msa0075830-mRNA-1:cds;Parent=Msa0075830-mRNA-1
chr1_2 CDS 51411069 51411347 51411069 ID=Msa0075830-mRNA-1:cds;Parent=Msa0075830-mRNA-1
chr1_2 CDS 51411435 51411611 51411435 ID=Msa0075830-mRNA-1:cds;Parent=Msa0075830-mRNA-1
chr1_2 CDS 51412236 51412289 51412236 ID=Msa0075830-mRNA-1:cds;Parent=Msa0075830-mRNA-1
chr1_2 CDS 51412372 51412520 51412372 ID=Msa0075830-mRNA-1:cds;Parent=Msa0075830-mRNA-1
chr1_2 CDS 51413227 51413290 51413227 ID=Msa0075830-mRNA-1:cds;Parent=Msa0075830-mRNA-1
chr1_2 CDS 51413396 51413566 51413396 ID=Msa0075830-mRNA-1:cds;Parent=Msa0075830-mRNA-1
chr1_2 CDS 51413653 51413790 51413653 ID=Msa0075830-mRNA-1:cds;Parent=Msa0075830-mRNA-1
chr1_2 CDS 51414293 51414334 51414293 ID=Msa0075830-mRNA-1:cds;Parent=Msa0075830-mRNA-1
chr1_2 three_prime_UTR 51414335 51414387 51414335 ID=Msa0075830-mRNA-1:three_prime_utr;Parent=Msa0075830-mRNA-1
chr1_2 three_prime_UTR 51415403 51415769 51415403 ID=Msa0075830-mRNA-1:three_prime_utr;Parent=Msa0075830-mRNA-1
Gene Sequence

>Msa0075830

ATGAAGCAAGCAGCAATGGCTACTTCACTTTCCCTCTCTTGTTCTTCTCCCTTACTTACCCGAAACACTCTCTTCTTCACCAAAACCTTCCCATTTTCTCGTTCCTTCACTCTCCCACCTTCTCTCTCCACCAAAACCCTAGTCTCTCAATCTCCTCCACGCCGCACTTTCGCCGTCCGCGCTGAATCGCAAAACGGCGTCGACCCCACCATCCACTATGACTTCGACCTTTTTACCATCGGTGCCGGAAGCGGAGGTGTCCGTGCTTCACGCTTTGCTTCCAATTTTGGTGCTAACGCTGCTATCTGTGAGCTTCCGTTCTCCACTATCTCATCGGATACCACCGGAGGTGTCGGCGGCACCTGTGTAATACGTGGATGTGTGCCAAAGAAATTACTCGTCTATGCCTCAAAATTTTCTCACGAATTTGAAGAAAGCAATGGTTTTGGATGGAGATATGACAGTGAACCTAAGCATGATTGGAGTAGTTTGATTGCTAATAAAAATGCTGAGTTGCAGAGGCTTACTGGCATCTACAAGAATATTTTGAAAAATTCTAATGTCAAGTTGATTGAAGGCCGTGGAAAGATTGTAGATCCTCACACAGTTGATGTTGATGGGAAGTTATATACAGCCAAACACATTTTAGTTTCAGTTGGAGGTCGTCCCTTCATTCCTGATATTCCTGGAAAGGAATATGCAATAGATTCAGATGCTGCCCTTGATTTACCATCAAAACCTGAGAAGATTGCCATTGTTGGTGGGGGTTACATTGCCTTGGAGTTTGCTGGTATCTTTAATGGTTTGAAAAGCAATGTTCATGTATTTATACGACAAAAGCAGGTTTTGCGAGGATTTGATGAAGAGATTAGAGATTTTGTCGCAGAAAATATGGCTCTAAGAGGTATTGAATTCCATACTGAGGAGTCTCCTGTAGCTATCACTAAGGCAGCTGATGGCTCACTCTCTTTAAAGACCAGCAAAGGTACTGTGGATGGTTTCTCTCATATTATGTTTGCTACAGGACGCAAACCTAATACTAAGAATTTAGGACTGGAGTCTGTTGGTGTGAAGATTGCTAAAGATGGATCAATAGAGGTTGATGAATACTCTCAAACATCGGTTCCTTCAATTTGGGCAATCGGAGATGCTACAAACAGGATAAATCTCACTCCAGTTGCTTTGATGGAGGGAGTGGCATTAACGAAAACATTGTTTCAGAATGAGCCAACAAAACCTGATTATAGAGCTGTTCCTGCTGCTGTGTTCTCCCAACCACCAATTGGAGGAGTTGGTCTCACAGAGGAGCAGGCTGTAGAACAATATGGCGATATTGACGTCTACACAGCAAATTTTAGGCCACTGAAGGCCACCCTCTCTGGGCTTCCAGACCGGGTTTTTATGAAACTAATAGTGTCTGCAAAAACAAATGAAGTTCTGGGTTTGCACATGTGTGGGGATGATGCTCCTGAAATTGTGCAGGGGTTTGCAGTTGCTATTAAAGCTGGATTGACAAAGGCAGACTTTGATGCTACTGTAGGCATTCACCCAACCGCAGCTGAGGAGTTTGTCACCATGAGGACTCCCACTAGGAAGATTCGAAAGAGCCTTGATTCACAGGGAAAGCCAGACTCTGAAGCAAAAGCTGTAGCCGGAACTTAA
Protein sequence

>Msa0075830

MKQAAMATSLSLSCSSPLLTRNTLFFTKTFPFSRSFTLPPSLSTKTLVSQSPPRRTFAVRAESQNGVDPTIHYDFDLFTIGAGSGGVRASRFASNFGANAAICELPFSTISSDTTGGVGGTCVIRGCVPKKLLVYASKFSHEFEESNGFGWRYDSEPKHDWSSLIANKNAELQRLTGIYKNILKNSNVKLIEGRGKIVDPHTVDVDGKLYTAKHILVSVGGRPFIPDIPGKEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSNVHVFIRQKQVLRGFDEEIRDFVAENMALRGIEFHTEESPVAITKAADGSLSLKTSKGTVDGFSHIMFATGRKPNTKNLGLESVGVKIAKDGSIEVDEYSQTSVPSIWAIGDATNRINLTPVALMEGVALTKTLFQNEPTKPDYRAVPAAVFSQPPIGGVGLTEEQAVEQYGDIDVYTANFRPLKATLSGLPDRVFMKLIVSAKTNEVLGLHMCGDDAPEIVQGFAVAIKAGLTKADFDATVGIHPTAAEEFVTMRTPTRKIRKSLDSQGKPDSEAKAVAGT*