Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081170 | XP_013450274.1 | 92.260 | 323 | 23 | 1 | 1 | 323 | 1 | 321 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081170 | sp|Q9FG13|CXE15_ARATH | 58.716 | 327 | 124 | 6 | 1 | 318 | 1 | 325 | 3.15e-122 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081170 | A0A072U3J9 | 92.260 | 323 | 23 | 1 | 1 | 323 | 1 | 321 | 0.0 | 610 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024650 | Msa1081170 | 0.813585 | 2.375701e-51 | -8.615850e-47 |
| Msa0025570 | Msa1081170 | 0.813143 | 2.970842e-51 | -8.615850e-47 |
| Msa0047660 | Msa1081170 | -0.807381 | 5.196454e-50 | -8.615850e-47 |
| Msa0051980 | Msa1081170 | 0.810704 | 1.009825e-50 | -8.615850e-47 |
| Msa0060410 | Msa1081170 | 0.802312 | 5.955229e-49 | -8.615850e-47 |
| Msa0062190 | Msa1081170 | 0.802085 | 6.632422e-49 | -8.615850e-47 |
| Msa0072180 | Msa1081170 | 0.830806 | 2.386410e-55 | -8.615850e-47 |
| Msa0073110 | Msa1081170 | 0.806071 | 9.829865e-50 | -8.615850e-47 |
| Msa0088800 | Msa1081170 | 0.803080 | 4.134349e-49 | -8.615850e-47 |
| Msa0090870 | Msa1081170 | 0.818952 | 1.498248e-52 | -8.615850e-47 |
| Msa0097010 | Msa1081170 | 0.808148 | 3.571577e-50 | -8.615850e-47 |
| Msa0106540 | Msa1081170 | 0.804972 | 1.671127e-49 | -8.615850e-47 |
| Msa0117650 | Msa1081170 | 0.810520 | 1.106386e-50 | -8.615850e-47 |
| Msa0120450 | Msa1081170 | 0.803419 | 3.518119e-49 | -8.615850e-47 |
| Msa0603310 | Msa1081170 | 0.829440 | 5.140493e-55 | -8.615850e-47 |
| Msa0629160 | Msa1081170 | 0.807235 | 5.580786e-50 | -8.615850e-47 |
| Msa0644340 | Msa1081170 | 0.809466 | 1.866411e-50 | -8.615850e-47 |
| Msa0657720 | Msa1081170 | 0.810193 | 1.301901e-50 | -8.615850e-47 |
| Msa0682910 | Msa1081170 | 0.811081 | 8.368591e-51 | -8.615850e-47 |
| Msa0702790 | Msa1081170 | 0.800793 | 1.219962e-48 | -8.615850e-47 |
| Msa0758990 | Msa1081170 | 0.851340 | 9.457291e-61 | -8.615850e-47 |
| Msa0800120 | Msa1081170 | 0.879869 | 8.759732e-70 | -8.615850e-47 |
| Msa0800150 | Msa1081170 | 0.882775 | 7.846620e-71 | -8.615850e-47 |
| Msa0800180 | Msa1081170 | 0.882984 | 6.582744e-71 | -8.615850e-47 |
| Msa0823480 | Msa1081170 | -0.805152 | 1.532307e-49 | -8.615850e-47 |
| Msa0828950 | Msa1081170 | 0.805841 | 1.098722e-49 | -8.615850e-47 |
| Msa0838210 | Msa1081170 | 0.870745 | 1.156553e-66 | -8.615850e-47 |
| Msa0163690 | Msa1081170 | 0.818094 | 2.345617e-52 | -8.615850e-47 |
| Msa0180380 | Msa1081170 | 0.821854 | 3.235278e-53 | -8.615850e-47 |
| Msa0183390 | Msa1081170 | 0.808732 | 2.680456e-50 | -8.615850e-47 |
| Msa0376430 | Msa1081170 | 0.802886 | 4.533792e-49 | -8.615850e-47 |
| Msa0388690 | Msa1081170 | 0.840490 | 8.429163e-58 | -8.615850e-47 |
| Msa1001930 | Msa1081170 | -0.811918 | 5.504937e-51 | -8.615850e-47 |
| Msa1019420 | Msa1081170 | 0.827306 | 1.682977e-54 | -8.615850e-47 |
| Msa1029860 | Msa1081170 | 0.800495 | 1.403179e-48 | -8.615850e-47 |
| Msa1034950 | Msa1081170 | 0.815385 | 9.498235e-52 | -8.615850e-47 |
| Msa1062290 | Msa1081170 | 0.823626 | 1.251513e-53 | -8.615850e-47 |
| Msa1070910 | Msa1081170 | 0.827103 | 1.881705e-54 | -8.615850e-47 |
| Msa1075010 | Msa1081170 | 0.817892 | 2.604661e-52 | -8.615850e-47 |
| Msa1081170 | Msa1092310 | 0.837693 | 4.471025e-57 | -8.615850e-47 |
| Msa1081170 | Msa1103450 | 0.806910 | 6.537993e-50 | -8.615850e-47 |
| Msa1081170 | Msa1107220 | 0.802246 | 6.144855e-49 | -8.615850e-47 |
| Msa1081170 | Msa1126530 | 0.894912 | 1.577912e-75 | -8.615850e-47 |
| Msa1081170 | Msa1128520 | -0.814121 | 1.809775e-51 | -8.615850e-47 |
| Msa1081170 | Msa1154060 | 0.834146 | 3.546994e-56 | -8.615850e-47 |
| Msa1081170 | Msa1154320 | 0.803078 | 4.139189e-49 | -8.615850e-47 |
| Msa1081170 | Msa1168320 | 0.807439 | 5.051803e-50 | -8.615850e-47 |
| Msa1081170 | Msa1184680 | 0.818968 | 1.485747e-52 | -8.615850e-47 |
| Msa1081170 | Msa1193940 | 0.804139 | 2.493451e-49 | -8.615850e-47 |
| Msa1081170 | Msa1203650 | 0.832433 | 9.478530e-56 | -8.615850e-47 |
| Msa1081170 | Msa1215540 | -0.826523 | 2.588627e-54 | -8.615850e-47 |
| Msa1081170 | Msa1221270 | 0.800904 | 1.157923e-48 | -8.615850e-47 |
| Msa1081170 | Msa1223540 | 0.808594 | 2.868969e-50 | -8.615850e-47 |
| Msa1081170 | Msa1223960 | 0.814286 | 1.664770e-51 | -8.615850e-47 |
| Msa1081170 | Msa1223990 | 0.823339 | 1.460753e-53 | -8.615850e-47 |
| Msa1081170 | Msa1248060 | 0.814897 | 1.218896e-51 | -8.615850e-47 |
| Msa1081170 | Msa1263110 | 0.833926 | 4.027680e-56 | -8.615850e-47 |
| Msa1081170 | Msa1268360 | 0.886620 | 2.918350e-72 | -8.615850e-47 |
| Msa1081170 | Msa1268390 | 0.871065 | 9.078909e-67 | -8.615850e-47 |
| Msa1081170 | Msa1268420 | 0.873051 | 1.983311e-67 | -8.615850e-47 |
| Msa1081170 | Msa1273320 | 0.818773 | 1.645533e-52 | -8.615850e-47 |
| Msa1081170 | Msa1301280 | -0.802417 | 5.666486e-49 | -8.615850e-47 |
| Msa1081170 | Msa1395720 | 0.802689 | 4.980307e-49 | -8.615850e-47 |
| Msa1081170 | Msa1401910 | 0.800698 | 1.275817e-48 | -8.615850e-47 |
| Msa1081170 | Msa1404810 | -0.820353 | 7.175290e-53 | -8.615850e-47 |
| Msa1081170 | Msa1405830 | 0.805159 | 1.526827e-49 | -8.615850e-47 |
| Msa1081170 | Msa1408390 | 0.816775 | 4.647602e-52 | -8.615850e-47 |
| Msa0258910 | Msa1081170 | 0.808477 | 3.038388e-50 | -8.615850e-47 |
| Msa0279810 | Msa1081170 | 0.807314 | 5.369196e-50 | -8.615850e-47 |
| Msa0282960 | Msa1081170 | 0.804432 | 2.166730e-49 | -8.615850e-47 |
| Msa0319220 | Msa1081170 | 0.812678 | 3.757806e-51 | -8.615850e-47 |
| Msa0339530 | Msa1081170 | 0.805572 | 1.251300e-49 | -8.615850e-47 |
| Msa0356270 | Msa1081170 | 0.804991 | 1.655710e-49 | -8.615850e-47 |
| Msa0566280 | Msa1081170 | 0.802522 | 5.391491e-49 | -8.615850e-47 |
| Msa0578830 | Msa1081170 | 0.802002 | 6.897504e-49 | -8.615850e-47 |
| Msa0596840 | Msa1081170 | 0.840549 | 8.133677e-58 | -8.615850e-47 |
| Msa0892820 | Msa1081170 | -0.802072 | 6.673649e-49 | -8.615850e-47 |
| Msa0925940 | Msa1081170 | 0.803883 | 2.818402e-49 | -8.615850e-47 |
| Msa0945890 | Msa1081170 | 0.819139 | 1.358951e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081170 | MtrunA17_Chr7g0268091 | 92.260 | 323 | 23 | 1 | 1 | 323 | 1 | 321 | 0.0 | 610 |
| Msa1081170 | MtrunA17_Chr4g0025291 | 57.188 | 313 | 131 | 3 | 7 | 318 | 5 | 315 | 1.78e-128 | 369 |
| Msa1081170 | MtrunA17_Chr7g0214851 | 34.743 | 331 | 187 | 11 | 13 | 320 | 27 | 351 | 1.81e-60 | 197 |
| Msa1081170 | MtrunA17_Chr1g0210121 | 35.866 | 329 | 182 | 10 | 7 | 318 | 26 | 342 | 2.45e-59 | 194 |
| Msa1081170 | MtrunA17_Chr3g0081521 | 34.405 | 311 | 181 | 7 | 7 | 298 | 7 | 313 | 4.23e-57 | 188 |
| Msa1081170 | MtrunA17_Chr1g0204211 | 37.801 | 291 | 164 | 7 | 20 | 302 | 43 | 324 | 2.36e-52 | 175 |
| Msa1081170 | MtrunA17_Chr8g0351201 | 34.985 | 323 | 198 | 9 | 3 | 318 | 7 | 324 | 1.77e-50 | 170 |
| Msa1081170 | MtrunA17_Chr7g0235741 | 34.906 | 318 | 190 | 9 | 7 | 318 | 40 | 346 | 1.24e-49 | 169 |
| Msa1081170 | MtrunA17_Chr3g0133701 | 31.847 | 314 | 192 | 7 | 14 | 318 | 14 | 314 | 6.08e-49 | 166 |
| Msa1081170 | MtrunA17_Chr6g0474411 | 33.657 | 309 | 187 | 9 | 19 | 318 | 27 | 326 | 1.04e-47 | 163 |
| Msa1081170 | MtrunA17_Chr1g0149271 | 34.657 | 277 | 171 | 6 | 7 | 282 | 3 | 270 | 1.84e-47 | 162 |
| Msa1081170 | MtrunA17_Chr8g0351211 | 34.675 | 323 | 183 | 10 | 15 | 321 | 9 | 319 | 2.06e-47 | 162 |
| Msa1081170 | MtrunA17_Chr1g0204201 | 34.062 | 320 | 186 | 9 | 15 | 320 | 19 | 327 | 3.05e-47 | 162 |
| Msa1081170 | MtrunA17_Chr6g0474491 | 35.030 | 334 | 185 | 13 | 3 | 318 | 5 | 324 | 2.75e-46 | 159 |
| Msa1081170 | MtrunA17_Chr4g0045181 | 33.019 | 318 | 199 | 8 | 7 | 318 | 8 | 317 | 7.28e-46 | 158 |
| Msa1081170 | MtrunA17_Chr6g0474471 | 36.486 | 296 | 153 | 10 | 41 | 318 | 47 | 325 | 7.87e-45 | 155 |
| Msa1081170 | MtrunA17_Chr4g0045131 | 30.794 | 315 | 207 | 6 | 7 | 318 | 48 | 354 | 4.80e-44 | 154 |
| Msa1081170 | MtrunA17_Chr6g0474541 | 39.130 | 230 | 131 | 5 | 15 | 241 | 48 | 271 | 5.74e-44 | 154 |
| Msa1081170 | MtrunA17_Chr1g0205871 | 32.911 | 316 | 195 | 11 | 14 | 319 | 15 | 323 | 1.05e-43 | 152 |
| Msa1081170 | MtrunA17_Chr5g0394251 | 29.630 | 324 | 214 | 8 | 7 | 320 | 13 | 332 | 2.05e-43 | 152 |
| Msa1081170 | MtrunA17_Chr3g0095711 | 31.173 | 324 | 207 | 8 | 7 | 320 | 53 | 370 | 3.09e-43 | 152 |
| Msa1081170 | MtrunA17_Chr8g0351171 | 31.761 | 318 | 193 | 11 | 15 | 319 | 12 | 318 | 8.36e-42 | 147 |
| Msa1081170 | MtrunA17_Chr6g0474631 | 34.146 | 287 | 162 | 9 | 20 | 292 | 26 | 299 | 1.10e-41 | 147 |
| Msa1081170 | MtrunA17_Chr6g0477231 | 31.104 | 299 | 179 | 6 | 39 | 322 | 53 | 339 | 1.26e-41 | 147 |
| Msa1081170 | MtrunA17_Chr6g0477271 | 32.042 | 284 | 181 | 5 | 39 | 320 | 80 | 353 | 3.00e-41 | 147 |
| Msa1081170 | MtrunA17_Chr6g0477161 | 32.302 | 291 | 174 | 6 | 39 | 318 | 56 | 334 | 3.56e-41 | 152 |
| Msa1081170 | MtrunA17_Chr6g0477161 | 30.435 | 299 | 184 | 6 | 36 | 322 | 401 | 687 | 8.74e-39 | 145 |
| Msa1081170 | MtrunA17_Chr8g0353951 | 30.625 | 320 | 211 | 7 | 7 | 320 | 16 | 330 | 4.92e-41 | 145 |
| Msa1081170 | MtrunA17_Chr5g0394241 | 30.514 | 331 | 216 | 8 | 1 | 320 | 1 | 328 | 5.22e-41 | 145 |
| Msa1081170 | MtrunA17_Chr6g0477251 | 30.267 | 337 | 200 | 8 | 4 | 318 | 10 | 333 | 5.67e-41 | 152 |
| Msa1081170 | MtrunA17_Chr6g0477251 | 30.499 | 341 | 202 | 8 | 4 | 322 | 564 | 891 | 7.14e-41 | 152 |
| Msa1081170 | MtrunA17_Chr1g0196311 | 37.826 | 230 | 128 | 4 | 71 | 298 | 121 | 337 | 8.28e-41 | 145 |
| Msa1081170 | MtrunA17_Chr1g0191301 | 33.101 | 287 | 162 | 8 | 45 | 314 | 67 | 340 | 1.86e-40 | 144 |
| Msa1081170 | MtrunA17_Chr4g0045121 | 32.117 | 274 | 177 | 5 | 10 | 282 | 14 | 279 | 2.84e-39 | 140 |
| Msa1081170 | MtrunA17_Chr7g0259161 | 37.069 | 232 | 132 | 6 | 71 | 298 | 106 | 327 | 1.78e-38 | 139 |
| Msa1081170 | MtrunA17_Chr7g0233871 | 30.284 | 317 | 215 | 5 | 6 | 318 | 11 | 325 | 3.93e-36 | 132 |
| Msa1081170 | MtrunA17_Chr5g0394211 | 29.358 | 327 | 207 | 10 | 7 | 319 | 43 | 359 | 1.06e-34 | 129 |
| Msa1081170 | MtrunA17_Chr4g0045191 | 28.247 | 308 | 188 | 8 | 18 | 321 | 29 | 307 | 6.86e-33 | 124 |
| Msa1081170 | MtrunA17_Chr1g0205781 | 29.653 | 317 | 214 | 6 | 6 | 318 | 11 | 322 | 2.13e-31 | 120 |
| Msa1081170 | MtrunA17_Chr6g0458881 | 31.429 | 280 | 148 | 9 | 59 | 301 | 146 | 418 | 3.62e-31 | 121 |
| Msa1081170 | MtrunA17_Chr1g0205791 | 30.462 | 325 | 205 | 9 | 6 | 322 | 9 | 320 | 9.34e-31 | 119 |
| Msa1081170 | MtrunA17_Chr7g0228721 | 31.359 | 287 | 148 | 8 | 57 | 301 | 152 | 431 | 1.51e-30 | 120 |
| Msa1081170 | MtrunA17_Chr6g0477241 | 31.818 | 198 | 113 | 5 | 39 | 225 | 66 | 252 | 3.21e-27 | 108 |
| Msa1081170 | MtrunA17_Chr6g0474611 | 30.216 | 139 | 87 | 4 | 156 | 285 | 3 | 140 | 6.86e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081170 | AT5G06570.3 | 58.716 | 327 | 124 | 6 | 1 | 318 | 16 | 340 | 2.98e-123 | 357 |
| Msa1081170 | AT5G06570.4 | 58.716 | 327 | 124 | 6 | 1 | 318 | 16 | 340 | 2.98e-123 | 357 |
| Msa1081170 | AT5G06570.1 | 58.716 | 327 | 124 | 6 | 1 | 318 | 1 | 325 | 3.20e-123 | 357 |
| Msa1081170 | AT5G06570.2 | 58.716 | 327 | 124 | 6 | 1 | 318 | 1 | 325 | 3.20e-123 | 357 |
| Msa1081170 | AT5G16080.1 | 36.538 | 312 | 184 | 6 | 7 | 312 | 28 | 331 | 1.59e-59 | 194 |
| Msa1081170 | AT5G62180.1 | 36.741 | 313 | 178 | 9 | 3 | 301 | 2 | 308 | 4.32e-51 | 172 |
| Msa1081170 | AT2G45600.1 | 35.127 | 316 | 187 | 10 | 15 | 323 | 16 | 320 | 2.13e-49 | 168 |
| Msa1081170 | AT2G45610.1 | 36.842 | 247 | 150 | 4 | 44 | 286 | 49 | 293 | 6.36e-47 | 161 |
| Msa1081170 | AT1G68620.1 | 34.459 | 296 | 176 | 7 | 7 | 297 | 23 | 305 | 1.01e-46 | 161 |
| Msa1081170 | AT5G23530.1 | 34.106 | 302 | 177 | 9 | 20 | 313 | 35 | 322 | 1.33e-43 | 153 |
| Msa1081170 | AT1G47480.1 | 28.302 | 318 | 210 | 7 | 10 | 323 | 11 | 314 | 3.14e-42 | 149 |
| Msa1081170 | AT5G27320.1 | 35.401 | 274 | 149 | 7 | 39 | 298 | 61 | 320 | 3.72e-42 | 149 |
| Msa1081170 | AT1G19190.1 | 30.159 | 315 | 203 | 8 | 15 | 322 | 13 | 317 | 1.68e-41 | 147 |
| Msa1081170 | AT3G63010.1 | 33.459 | 266 | 148 | 5 | 49 | 298 | 70 | 322 | 9.58e-40 | 143 |
| Msa1081170 | AT3G05120.1 | 33.457 | 269 | 151 | 6 | 45 | 298 | 67 | 322 | 1.03e-39 | 143 |
| Msa1081170 | AT3G48690.1 | 29.781 | 319 | 214 | 8 | 7 | 318 | 5 | 320 | 2.99e-36 | 133 |
| Msa1081170 | AT3G48700.1 | 28.086 | 324 | 218 | 7 | 7 | 318 | 5 | 325 | 1.88e-35 | 131 |
| Msa1081170 | AT1G49640.1 | 28.086 | 324 | 207 | 11 | 7 | 319 | 6 | 314 | 8.50e-35 | 129 |
| Msa1081170 | AT2G03550.1 | 28.846 | 312 | 202 | 9 | 14 | 318 | 12 | 310 | 4.17e-33 | 124 |
| Msa1081170 | AT1G49650.1 | 32.130 | 277 | 170 | 9 | 14 | 282 | 68 | 334 | 1.11e-32 | 125 |
| Msa1081170 | AT5G14310.1 | 29.965 | 287 | 159 | 6 | 59 | 308 | 140 | 421 | 1.18e-30 | 120 |
| Msa1081170 | AT3G27320.2 | 31.095 | 283 | 151 | 7 | 57 | 301 | 120 | 396 | 8.56e-30 | 118 |
| Msa1081170 | AT1G49660.1 | 29.032 | 279 | 185 | 9 | 7 | 279 | 5 | 276 | 1.04e-29 | 115 |
| Msa1081170 | AT3G27320.1 | 31.095 | 283 | 151 | 7 | 57 | 301 | 152 | 428 | 1.38e-29 | 117 |
Find 107 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAGCATGAACTGTTTA+AGG | 0.092720 | 7_2:+80959394 | None:intergenic |
| TAAAGCAGTTTGTAGGATTA+AGG | 0.197493 | 7_2:-80959278 | Msa1081170:three_prime_UTR |
| TCATACAACAATTGTGAATA+TGG | 0.214269 | 7_2:+80961993 | None:intergenic |
| ATACAATAATATATATAATA+TGG | 0.221172 | 7_2:-80962281 | Msa1081170:exon |
| AATGAAGCTTGATCCCATTT+TGG | 0.221227 | 7_2:-80959580 | Msa1081170:CDS |
| CTTTGACAGTGTGTTTATTA+TGG | 0.244190 | 7_2:-80961804 | Msa1081170:CDS |
| GCCACCAACTATCACCAAAA+TGG | 0.244462 | 7_2:+80959566 | None:intergenic |
| AGCTTCATTTGTTCAAGATT+TGG | 0.259469 | 7_2:+80959594 | None:intergenic |
| CCAGTGATTGTGTTCCTTCA+TGG | 0.273519 | 7_2:-80962049 | Msa1081170:CDS |
| TTTATTATGGGTGACTCTTC+TGG | 0.275927 | 7_2:-80961791 | Msa1081170:CDS |
| TAATTTACTTGGGATAATAT+TGG | 0.286936 | 7_2:+80959356 | None:intergenic |
| TCAAGATTCAATGTTTGTTC+TGG | 0.294664 | 7_2:+80961632 | None:intergenic |
| TGGAGGACCTTCCTCAGATT+TGG | 0.297434 | 7_2:+80961652 | None:intergenic |
| CCTATATTAAAGCAGTTTGT+AGG | 0.313778 | 7_2:-80959285 | Msa1081170:three_prime_UTR |
| CACCAGCTCGCGGTTCGGTT+TGG | 0.326565 | 7_2:-80961755 | Msa1081170:CDS |
| GATAAATAAGTCATTGTTAT+CGG | 0.332075 | 7_2:-80959254 | Msa1081170:three_prime_UTR |
| TTCTTGTTGTTGATGTTGTT+TGG | 0.341111 | 7_2:+80962082 | None:intergenic |
| CATCCATTGGCGAATCCATT+TGG | 0.361125 | 7_2:-80959627 | Msa1081170:CDS |
| TTTGACAGTGTGTTTATTAT+GGG | 0.368917 | 7_2:-80961803 | Msa1081170:CDS |
| CCTACAAACTGCTTTAATAT+AGG | 0.374093 | 7_2:+80959285 | None:intergenic |
| GTGACTTTAATTAATTTACT+TGG | 0.382606 | 7_2:+80959345 | None:intergenic |
| ACTGAGTTGTCTTCTATTGT+GGG | 0.382901 | 7_2:+80962163 | None:intergenic |
| TTTGTTTCGGCTCCCGTACA+TGG | 0.389708 | 7_2:-80962018 | Msa1081170:CDS |
| GCAATGAATTGCTTAAAGAT+AGG | 0.394694 | 7_2:-80959545 | Msa1081170:CDS |
| CAGGGGTTGAGCCATGGTTA+TGG | 0.420795 | 7_2:-80961854 | Msa1081170:CDS |
| CATACAACAATTGTGAATAT+GGG | 0.426547 | 7_2:+80961994 | None:intergenic |
| GAAGTTGTTAGAACGGCAAA+TGG | 0.428164 | 7_2:+80962198 | None:intergenic |
| TGTGAGGTGGCTTCAAAGGC+AGG | 0.428633 | 7_2:-80961873 | Msa1081170:CDS |
| TACAATAATATATATAATAT+GGG | 0.436847 | 7_2:-80962280 | Msa1081170:exon |
| AAGTCATTGTTATCGGTTTG+TGG | 0.438463 | 7_2:-80959247 | Msa1081170:three_prime_UTR |
| TACTGAGTTGTCTTCTATTG+TGG | 0.438893 | 7_2:+80962162 | None:intergenic |
| CATTAAATACATTGAGTTTG+AGG | 0.440998 | 7_2:-80959481 | Msa1081170:CDS |
| TGCAAATTCGAAAGAAATGA+TGG | 0.442186 | 7_2:+80962326 | None:intergenic |
| GTGAATATGGGGCCATGTAC+GGG | 0.442379 | 7_2:+80962006 | None:intergenic |
| GTCGAAAAGACAGTCTTTGA+AGG | 0.443728 | 7_2:+80962138 | None:intergenic |
| ATTGAACCTGTGAGAATAAG+AGG | 0.446230 | 7_2:-80961716 | Msa1081170:CDS |
| GCCGCTGGAAGACGGTGCTC+TGG | 0.448836 | 7_2:+80961917 | None:intergenic |
| GCAACAAGGTTGAAAGGAAT+AGG | 0.450448 | 7_2:-80959510 | Msa1081170:CDS |
| CCACCAACTATCACCAAAAT+GGG | 0.451123 | 7_2:+80959567 | None:intergenic |
| TGTGAATATGGGGCCATGTA+CGG | 0.460692 | 7_2:+80962005 | None:intergenic |
| TTGCTCACCAGCTCGCGGTT+CGG | 0.462960 | 7_2:-80961760 | Msa1081170:CDS |
| ATTAAATACATTGAGTTTGA+GGG | 0.463910 | 7_2:-80959480 | Msa1081170:CDS |
| ATATTCAGAAACTGCAAAAG+AGG | 0.479398 | 7_2:-80959427 | Msa1081170:CDS |
| TCTGGTGCAAGCCGGTAGTC+CGG | 0.481494 | 7_2:+80961935 | None:intergenic |
| TTTGGACTTCCATGTCCAAA+TGG | 0.481522 | 7_2:+80959612 | None:intergenic |
| GCTCGCGGTTCGGTTTGGAT+TGG | 0.481933 | 7_2:-80961750 | Msa1081170:CDS |
| AACCGTCGCTATAGAGTTGA+AGG | 0.495505 | 7_2:+80962221 | None:intergenic |
| GAAATTTGAAGTTGTTAGAA+CGG | 0.506659 | 7_2:+80962191 | None:intergenic |
| AGATTCAATGTTTGTTCTGG+AGG | 0.507064 | 7_2:+80961635 | None:intergenic |
| TGATCTCTACTCTCTCCAAC+AGG | 0.510331 | 7_2:+80959648 | None:intergenic |
| TGGTGGTTGCACCGGACTAC+CGG | 0.511979 | 7_2:-80961946 | Msa1081170:CDS |
| AAGCTGTGAGGTGGCTTCAA+AGG | 0.513473 | 7_2:-80961877 | Msa1081170:CDS |
| TCAAGCACTGGTGGTTGCAC+CGG | 0.513886 | 7_2:-80961954 | Msa1081170:CDS |
| TGAGGTGGCTTCAAAGGCAG+GGG | 0.515102 | 7_2:-80961871 | Msa1081170:CDS |
| TGACTTTAATTAATTTACTT+GGG | 0.518018 | 7_2:+80959346 | None:intergenic |
| GAGTTTGAGGGGTGTGAACA+TGG | 0.521959 | 7_2:-80959468 | Msa1081170:CDS |
| CCATGAAGGAACACAATCAC+TGG | 0.524194 | 7_2:+80962049 | None:intergenic |
| AACTATGCAACAAGGTTGAA+AGG | 0.532635 | 7_2:-80959516 | Msa1081170:CDS |
| ATTGTGTTCCTTCATGGTGG+AGG | 0.533059 | 7_2:-80962043 | Msa1081170:CDS |
| CAATGAATTGCTTAAAGATA+GGG | 0.536108 | 7_2:-80959544 | Msa1081170:CDS |
| AATCCTCTACTACGTGGGGA+AGG | 0.539422 | 7_2:+80962254 | None:intergenic |
| GACGGTGCTCTGGTGCAAGC+CGG | 0.547439 | 7_2:+80961927 | None:intergenic |
| TTCCTTCAACTCTATAGCGA+CGG | 0.551743 | 7_2:-80962223 | Msa1081170:CDS |
| CGCTGGACTTCAAGCACTGG+TGG | 0.553404 | 7_2:-80961963 | Msa1081170:CDS |
| TTCCCTTCCCCACGTAGTAG+AGG | 0.554411 | 7_2:-80962257 | Msa1081170:CDS |
| TGAATCTTGACTTACTAGAC+AGG | 0.555572 | 7_2:-80961619 | Msa1081170:intron |
| ACAGCATCATCAATTGCCGC+TGG | 0.557842 | 7_2:+80961902 | None:intergenic |
| CAAAGGCAGGGGTTGAGCCA+TGG | 0.559944 | 7_2:-80961860 | Msa1081170:CDS |
| ACATAACCTCTTATTCTCAC+AGG | 0.560601 | 7_2:+80961710 | None:intergenic |
| ATCCAAACCGAACCGCGAGC+TGG | 0.561333 | 7_2:+80961753 | None:intergenic |
| TGTCCAAATGGATTCGCCAA+TGG | 0.564040 | 7_2:+80959624 | None:intergenic |
| CATCAATTGCCGCTGGAAGA+CGG | 0.566772 | 7_2:+80961909 | None:intergenic |
| GTGAGGTGGCTTCAAAGGCA+GGG | 0.568163 | 7_2:-80961872 | Msa1081170:CDS |
| AACAAAAGCCTCCACCATGA+AGG | 0.573822 | 7_2:+80962035 | None:intergenic |
| AGTTTGAGGGGTGTGAACAT+GGG | 0.575990 | 7_2:-80959467 | Msa1081170:CDS |
| TTATGGGTGACTCTTCTGGC+GGG | 0.581327 | 7_2:-80961787 | Msa1081170:CDS |
| TTCGAAAGAAATGATGGATG+AGG | 0.582762 | 7_2:+80962332 | None:intergenic |
| TGATGTTGTTTGGTTTGTAG+AGG | 0.582952 | 7_2:+80962092 | None:intergenic |
| CCACGTAGTAGAGGATTGCA+TGG | 0.583298 | 7_2:-80962248 | Msa1081170:CDS |
| ATCCTCTACTACGTGGGGAA+GGG | 0.583978 | 7_2:+80962255 | None:intergenic |
| AGCCGCTGGACTTCAAGCAC+TGG | 0.585205 | 7_2:-80961966 | Msa1081170:CDS |
| ACTGTCAAAGTCAACATCAC+TGG | 0.588550 | 7_2:+80961817 | None:intergenic |
| CATGCAATCCTCTACTACGT+GGG | 0.592592 | 7_2:+80962249 | None:intergenic |
| TGTTGTATGAGTCTAGCCGC+TGG | 0.594495 | 7_2:-80961980 | Msa1081170:CDS |
| TTAAATACATTGAGTTTGAG+GGG | 0.597234 | 7_2:-80959479 | Msa1081170:CDS |
| ATTATGGGTGACTCTTCTGG+CGG | 0.606698 | 7_2:-80961788 | Msa1081170:CDS |
| TCGGTTTGGATTGGATCGAA+CGG | 0.608973 | 7_2:-80961741 | Msa1081170:CDS |
| TGGAGGTTGTCAATGCCTGT+TGG | 0.608993 | 7_2:-80959663 | Msa1081170:CDS |
| TTGGCGAATCCATTTGGACA+TGG | 0.609677 | 7_2:-80959621 | Msa1081170:CDS |
| ATGCTGTCGAAGCTGTGAGG+TGG | 0.615332 | 7_2:-80961886 | Msa1081170:CDS |
| ATACAACAATTGTGAATATG+GGG | 0.617658 | 7_2:+80961995 | None:intergenic |
| AGAGAGTAGAGATCATCCAT+TGG | 0.627428 | 7_2:-80959640 | Msa1081170:CDS |
| ACCAGAGCACCGTCTTCCAG+CGG | 0.628013 | 7_2:-80961918 | Msa1081170:CDS |
| CACCAGTGCTTGAAGTCCAG+CGG | 0.635664 | 7_2:+80961964 | None:intergenic |
| GCATTTGCAAATCAAACACA+CGG | 0.635740 | 7_2:-80962306 | Msa1081170:five_prime_UTR |
| GCCATGGTTATGGAGAGCCA+TGG | 0.645828 | 7_2:-80961844 | Msa1081170:CDS |
| GTGATTGTGTTCCTTCATGG+TGG | 0.647455 | 7_2:-80962046 | Msa1081170:CDS |
| ATGCAATCCTCTACTACGTG+GGG | 0.648507 | 7_2:+80962250 | None:intergenic |
| CCATGCAATCCTCTACTACG+TGG | 0.649967 | 7_2:+80962248 | None:intergenic |
| CACGTAGTAGAGGATTGCAT+GGG | 0.651059 | 7_2:-80962247 | Msa1081170:CDS |
| GGAAGTACGGACCAAATCTG+AGG | 0.652219 | 7_2:-80961663 | Msa1081170:CDS |
| GTACGGACCAAATCTGAGGA+AGG | 0.656456 | 7_2:-80961659 | Msa1081170:CDS |
| GAATATTGCTCACCAGCTCG+CGG | 0.656723 | 7_2:-80961765 | Msa1081170:CDS |
| TCAACATCACTGGTCAACCA+TGG | 0.667320 | 7_2:+80961827 | None:intergenic |
| ACCATGGCTCTCCATAACCA+TGG | 0.673171 | 7_2:+80961843 | None:intergenic |
| GGGCTGCAAACTATGCAACA+AGG | 0.691008 | 7_2:-80959524 | Msa1081170:CDS |
| ATGATGCTGTCGAAGCTGTG+AGG | 0.759020 | 7_2:-80961889 | Msa1081170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTATTATTTTTATAAA+GGG | + | chr7_2:80961611-80961630 | None:intergenic | 0.0% |
| !!! | TATTATTATTATTTTTATAA+AGG | + | chr7_2:80961612-80961631 | None:intergenic | 0.0% |
| !!! | AATTAGAATCAATTATTTTA+GGG | + | chr7_2:80959898-80959917 | None:intergenic | 10.0% |
| !!! | AAATTAGAATCAATTATTTT+AGG | + | chr7_2:80959899-80959918 | None:intergenic | 10.0% |
| !!! | TCTTTAAACATTTTAAATTA+GGG | + | chr7_2:80961166-80961185 | None:intergenic | 10.0% |
| !! | AAAATATTATTATCTCTAAT+CGG | - | chr7_2:80961215-80961234 | Msa1081170:intron | 10.0% |
| !! | AATAATATATTAAAATAGCA+AGG | - | chr7_2:80961512-80961531 | Msa1081170:intron | 10.0% |
| !! | ATAATATATTAAAATAGCAA+GGG | - | chr7_2:80961513-80961532 | Msa1081170:intron | 10.0% |
| !!! | ATATTTTGTTCTAAAATGTT+CGG | - | chr7_2:80959997-80960016 | Msa1081170:intron | 15.0% |
| !!! | TAAAAGAATCATTCATTTTT+AGG | + | chr7_2:80960126-80960145 | None:intergenic | 15.0% |
| !!! | TATCTTTCATTTTGTATTTA+TGG | - | chr7_2:80960257-80960276 | Msa1081170:intron | 15.0% |
| !! | ACAATATTACAATACAAATT+TGG | - | chr7_2:80960680-80960699 | Msa1081170:intron | 15.0% |
| !! | AATACTCTTTGTTAATTTAA+AGG | - | chr7_2:80960955-80960974 | Msa1081170:intron | 15.0% |
| !!! | CTCTTTAAACATTTTAAATT+AGG | + | chr7_2:80961167-80961186 | None:intergenic | 15.0% |
| !!! | GATTAGAGATAATAATATTT+TGG | + | chr7_2:80961216-80961235 | None:intergenic | 15.0% |
| !!! | TTTTAATCTTTAACAACTTT+AGG | - | chr7_2:80961325-80961344 | Msa1081170:intron | 15.0% |
| !! | TGACTTTAATTAATTTACTT+GGG | + | chr7_2:80962113-80962132 | None:intergenic | 15.0% |
| !! | TTTAATATAGGCTAAAAATA+TGG | + | chr7_2:80962162-80962181 | None:intergenic | 15.0% |
| !!! | AGAATTTCTCATCTAATTTT+CGG | - | chr7_2:80959951-80959970 | Msa1081170:intron | 20.0% |
| !! | ATGTAAGTATTATATATCAG+AGG | + | chr7_2:80960185-80960204 | None:intergenic | 20.0% |
| !!! | AATTTTGCACTTTTTTTTAG+AGG | - | chr7_2:80960325-80960344 | Msa1081170:intron | 20.0% |
| !! | TGTAAAATAGTCAAATGAAT+TGG | - | chr7_2:80960371-80960390 | Msa1081170:intron | 20.0% |
| !! | ACGACATTCTTTATTATATT+TGG | + | chr7_2:80960718-80960737 | None:intergenic | 20.0% |
| !! | AATATAATAAAGAATGTCGT+TGG | - | chr7_2:80960718-80960737 | Msa1081170:intron | 20.0% |
| !!! | GGTAAGATTTTATTAAAAAG+TGG | - | chr7_2:80961025-80961044 | Msa1081170:intron | 20.0% |
| !! | AGTTGTTAAAGATTAAAAGA+GGG | + | chr7_2:80961323-80961342 | None:intergenic | 20.0% |
| !! | AAGTTGTTAAAGATTAAAAG+AGG | + | chr7_2:80961324-80961343 | None:intergenic | 20.0% |
| !! | TTAGCACATATATGTAAAAT+TGG | + | chr7_2:80961732-80961751 | None:intergenic | 20.0% |
| !!! | ATTTCCAATTTTTCAGATTT+TGG | - | chr7_2:80961773-80961792 | Msa1081170:CDS | 20.0% |
| !! | ATTAAATACATTGAGTTTGA+GGG | - | chr7_2:80961976-80961995 | Msa1081170:CDS | 20.0% |
| !! | TAATTTACTTGGGATAATAT+TGG | + | chr7_2:80962103-80962122 | None:intergenic | 20.0% |
| !! | GTGACTTTAATTAATTTACT+TGG | + | chr7_2:80962114-80962133 | None:intergenic | 20.0% |
| !! | GATAAATAAGTCATTGTTAT+CGG | - | chr7_2:80962202-80962221 | Msa1081170:CDS | 20.0% |
| !!! | AATTTTAGTAATTTGTGTTG+TGG | - | chr7_2:80962260-80962279 | Msa1081170:CDS | 20.0% |
| !! | GAAATTTGAAGTTGTTAGAA+CGG | + | chr7_2:80959268-80959287 | None:intergenic | 25.0% |
| ! | ATACAACAATTGTGAATATG+GGG | + | chr7_2:80959464-80959483 | None:intergenic | 25.0% |
| ! | CATACAACAATTGTGAATAT+GGG | + | chr7_2:80959465-80959484 | None:intergenic | 25.0% |
| ! | TCATACAACAATTGTGAATA+TGG | + | chr7_2:80959466-80959485 | None:intergenic | 25.0% |
| ! | TTTGACAGTGTGTTTATTAT+GGG | - | chr7_2:80959653-80959672 | Msa1081170:CDS | 25.0% |
| !! | AATAAGAGGTTATGTTTTGT+TGG | - | chr7_2:80959754-80959773 | Msa1081170:intron | 25.0% |
| ! | AGAGCTTGAATTTGATATAT+AGG | + | chr7_2:80960054-80960073 | None:intergenic | 25.0% |
| ! | ACTTCAACGAAGAAATAATT+TGG | + | chr7_2:80960077-80960096 | None:intergenic | 25.0% |
| !! | CTCATTATTTTCAAAGAAGT+TGG | + | chr7_2:80960521-80960540 | None:intergenic | 25.0% |
| !! | CAACTTCTTTGAAAATAATG+AGG | - | chr7_2:80960519-80960538 | Msa1081170:intron | 25.0% |
| ! | TAAAACTAAAACAAGTGAAG+TGG | + | chr7_2:80960619-80960638 | None:intergenic | 25.0% |
| !!! | TTTTAGTTTTAGCCTTATCT+GGG | - | chr7_2:80960628-80960647 | Msa1081170:intron | 25.0% |
| ! | TGTCATGGAAATTGAATATT+TGG | + | chr7_2:80960800-80960819 | None:intergenic | 25.0% |
| ! | AATTTCCATGACATCATATT+AGG | - | chr7_2:80960807-80960826 | Msa1081170:intron | 25.0% |
| ! | ACACAAAGTCAACTAAATAT+TGG | + | chr7_2:80960869-80960888 | None:intergenic | 25.0% |
| ! | AAAGTGGTGTAATAATTAGT+TGG | - | chr7_2:80961041-80961060 | Msa1081170:intron | 25.0% |
| !!! | CTTGCTAACAAGTTTTTTTA+AGG | + | chr7_2:80961191-80961210 | None:intergenic | 25.0% |
| !!! | GATGGTTGTTATTTAAAGTT+AGG | - | chr7_2:80961253-80961272 | Msa1081170:intron | 25.0% |
| ! | TAATCTTTAACAACTTTAGG+TGG | - | chr7_2:80961328-80961347 | Msa1081170:intron | 25.0% |
| ! | ACTTGTGGTTCATTAAATTA+TGG | - | chr7_2:80961385-80961404 | Msa1081170:intron | 25.0% |
| !!! | TCATCAACTTTTTCCAATAT+AGG | - | chr7_2:80961428-80961447 | Msa1081170:intron | 25.0% |
| ! | TACAAGTAATATTTACCACA+TGG | + | chr7_2:80961485-80961504 | None:intergenic | 25.0% |
| ! | AAGATTGAAAATCTTTACAC+TGG | + | chr7_2:80961569-80961588 | None:intergenic | 25.0% |
| ! | TTATAAAGGGTTCTATGATT+TGG | + | chr7_2:80961598-80961617 | None:intergenic | 25.0% |
| ! | CAATGAATTGCTTAAAGATA+GGG | - | chr7_2:80961912-80961931 | Msa1081170:CDS | 25.0% |
| ! | CATTAAATACATTGAGTTTG+AGG | - | chr7_2:80961975-80961994 | Msa1081170:CDS | 25.0% |
| ! | TTAAATACATTGAGTTTGAG+GGG | - | chr7_2:80961977-80961996 | Msa1081170:CDS | 25.0% |
| TGCAAATTCGAAAGAAATGA+TGG | + | chr7_2:80959133-80959152 | None:intergenic | 30.0% | |
| !! | TTCTTGTTGTTGATGTTGTT+TGG | + | chr7_2:80959377-80959396 | None:intergenic | 30.0% |
| CTTTGACAGTGTGTTTATTA+TGG | - | chr7_2:80959652-80959671 | Msa1081170:CDS | 30.0% | |
| TCAAGATTCAATGTTTGTTC+TGG | + | chr7_2:80959827-80959846 | None:intergenic | 30.0% | |
| AATACTTACATCGTTCATTC+TGG | - | chr7_2:80960194-80960213 | Msa1081170:intron | 30.0% | |
| GAGCCACATTATAATATTGT+GGG | + | chr7_2:80960432-80960451 | None:intergenic | 30.0% | |
| AGAGCCACATTATAATATTG+TGG | + | chr7_2:80960433-80960452 | None:intergenic | 30.0% | |
| ! | CTTTGAAAATAATGAGGCAT+TGG | - | chr7_2:80960525-80960544 | Msa1081170:intron | 30.0% |
| !!! | GTTTTAGTTTTAGCCTTATC+TGG | - | chr7_2:80960627-80960646 | Msa1081170:intron | 30.0% |
| TTTCACCTAATATGATGTCA+TGG | + | chr7_2:80960815-80960834 | None:intergenic | 30.0% | |
| ! | ACTTTGTGTAGCAAGTTTTT+AGG | - | chr7_2:80960880-80960899 | Msa1081170:intron | 30.0% |
| ! | CTTTGTGTAGCAAGTTTTTA+GGG | - | chr7_2:80960881-80960900 | Msa1081170:intron | 30.0% |
| CAAAAGTAGAAAAGTTGTCT+TGG | + | chr7_2:80961089-80961108 | None:intergenic | 30.0% | |
| TCTCTAATCGGACAATATTA+TGG | - | chr7_2:80961227-80961246 | Msa1081170:intron | 30.0% | |
| AAAGCAATGGAAACCTATAT+TGG | + | chr7_2:80961444-80961463 | None:intergenic | 30.0% | |
| !! | TACGATTAGTTTGAAAGCAA+TGG | + | chr7_2:80961457-80961476 | None:intergenic | 30.0% |
| ATTGCTTTCAAACTAATCGT+AGG | - | chr7_2:80961456-80961475 | Msa1081170:intron | 30.0% | |
| !! | TCCAATTTTTCAGATTTTGG+AGG | - | chr7_2:80961776-80961795 | Msa1081170:CDS | 30.0% |
| ACCTCCAAAATCTGAAAAAT+TGG | + | chr7_2:80961780-80961799 | None:intergenic | 30.0% | |
| AGCTTCATTTGTTCAAGATT+TGG | + | chr7_2:80961865-80961884 | None:intergenic | 30.0% | |
| GCAATGAATTGCTTAAAGAT+AGG | - | chr7_2:80961911-80961930 | Msa1081170:CDS | 30.0% | |
| ATATTCAGAAACTGCAAAAG+AGG | - | chr7_2:80962029-80962048 | Msa1081170:CDS | 30.0% | |
| ! | TTTGAAGCATGAACTGTTTA+AGG | + | chr7_2:80962065-80962084 | None:intergenic | 30.0% |
| CCTACAAACTGCTTTAATAT+AGG | + | chr7_2:80962174-80962193 | None:intergenic | 30.0% | |
| CCTATATTAAAGCAGTTTGT+AGG | - | chr7_2:80962171-80962190 | Msa1081170:CDS | 30.0% | |
| TAAAGCAGTTTGTAGGATTA+AGG | - | chr7_2:80962178-80962197 | Msa1081170:CDS | 30.0% | |
| !! | TTCGAAAGAAATGATGGATG+AGG | + | chr7_2:80959127-80959146 | None:intergenic | 35.0% |
| GCATTTGCAAATCAAACACA+CGG | - | chr7_2:80959150-80959169 | Msa1081170:three_prime_UTR | 35.0% | |
| ACTGAGTTGTCTTCTATTGT+GGG | + | chr7_2:80959296-80959315 | None:intergenic | 35.0% | |
| TACTGAGTTGTCTTCTATTG+TGG | + | chr7_2:80959297-80959316 | None:intergenic | 35.0% | |
| !! | TGATGTTGTTTGGTTTGTAG+AGG | + | chr7_2:80959367-80959386 | None:intergenic | 35.0% |
| TTTATTATGGGTGACTCTTC+TGG | - | chr7_2:80959665-80959684 | Msa1081170:CDS | 35.0% | |
| ATTGAACCTGTGAGAATAAG+AGG | - | chr7_2:80959740-80959759 | Msa1081170:intron | 35.0% | |
| ACATAACCTCTTATTCTCAC+AGG | + | chr7_2:80959749-80959768 | None:intergenic | 35.0% | |
| AGATTCAATGTTTGTTCTGG+AGG | + | chr7_2:80959824-80959843 | None:intergenic | 35.0% | |
| TGAATCTTGACTTACTAGAC+AGG | - | chr7_2:80959837-80959856 | Msa1081170:intron | 35.0% | |
| CGGTAGAATCATGAATTGAA+TGG | - | chr7_2:80959971-80959990 | Msa1081170:intron | 35.0% | |
| CCACATTATAATATTGTGGG+TGG | + | chr7_2:80960429-80960448 | None:intergenic | 35.0% | |
| CCACCCACAATATTATAATG+TGG | - | chr7_2:80960426-80960445 | Msa1081170:intron | 35.0% | |
| !!! | TGTGGCTCTTTTTTTACAGT+AGG | - | chr7_2:80960444-80960463 | Msa1081170:intron | 35.0% |
| !! | GGCATTGGTATAAAGTTATC+TGG | - | chr7_2:80960540-80960559 | Msa1081170:intron | 35.0% |
| CATTTAATTACCTACGTCCA+TGG | + | chr7_2:80960579-80960598 | None:intergenic | 35.0% | |
| CATGGACGTAGGTAATTAAA+TGG | - | chr7_2:80960577-80960596 | Msa1081170:intron | 35.0% | |
| TGAAGTGGTTGTGTTTATTG+GGG | + | chr7_2:80960604-80960623 | None:intergenic | 35.0% | |
| GTGAAGTGGTTGTGTTTATT+GGG | + | chr7_2:80960605-80960624 | None:intergenic | 35.0% | |
| AGTGAAGTGGTTGTGTTTAT+TGG | + | chr7_2:80960606-80960625 | None:intergenic | 35.0% | |
| ATTGGTTAAGCAGCTAAAAG+AGG | - | chr7_2:80961004-80961023 | Msa1081170:intron | 35.0% | |
| CGGACAATATTATGGAATGA+TGG | - | chr7_2:80961235-80961254 | Msa1081170:intron | 35.0% | |
| ! | AATGAAGCTTGATCCCATTT+TGG | - | chr7_2:80961876-80961895 | Msa1081170:CDS | 35.0% |
| AACTATGCAACAAGGTTGAA+AGG | - | chr7_2:80961940-80961959 | Msa1081170:CDS | 35.0% | |
| !! | AAGTCATTGTTATCGGTTTG+TGG | - | chr7_2:80962209-80962228 | Msa1081170:CDS | 35.0% |
| !!! | TATCGGTTTGTGGTTTTTAG+TGG | - | chr7_2:80962219-80962238 | Msa1081170:CDS | 35.0% |
| TTCCTTCAACTCTATAGCGA+CGG | - | chr7_2:80959233-80959252 | Msa1081170:three_prime_UTR | 40.0% | |
| GAAGTTGTTAGAACGGCAAA+TGG | + | chr7_2:80959261-80959280 | None:intergenic | 40.0% | |
| GTCGAAAAGACAGTCTTTGA+AGG | + | chr7_2:80959321-80959340 | None:intergenic | 40.0% | |
| ACTGTCAAAGTCAACATCAC+TGG | + | chr7_2:80959642-80959661 | None:intergenic | 40.0% | |
| TTGTGGGTGGAAATTGTGAA+CGG | + | chr7_2:80960416-80960435 | None:intergenic | 40.0% | |
| GGTATAAAGTTATCTGGCCA+AGG | - | chr7_2:80960546-80960565 | Msa1081170:intron | 40.0% | |
| ACTAATCGTAGGTTTCCATG+TGG | - | chr7_2:80961467-80961486 | Msa1081170:intron | 40.0% | |
| AGAGAGTAGAGATCATCCAT+TGG | - | chr7_2:80961816-80961835 | Msa1081170:CDS | 40.0% | |
| TTTGGACTTCCATGTCCAAA+TGG | + | chr7_2:80961847-80961866 | None:intergenic | 40.0% | |
| !! | GATCCCATTTTGGTGATAGT+TGG | - | chr7_2:80961886-80961905 | Msa1081170:CDS | 40.0% |
| CCACCAACTATCACCAAAAT+GGG | + | chr7_2:80961892-80961911 | None:intergenic | 40.0% | |
| GCAACAAGGTTGAAAGGAAT+AGG | - | chr7_2:80961946-80961965 | Msa1081170:CDS | 40.0% | |
| ATGCAATCCTCTACTACGTG+GGG | + | chr7_2:80959209-80959228 | None:intergenic | 45.0% | |
| CATGCAATCCTCTACTACGT+GGG | + | chr7_2:80959210-80959229 | None:intergenic | 45.0% | |
| CACGTAGTAGAGGATTGCAT+GGG | - | chr7_2:80959209-80959228 | Msa1081170:three_prime_UTR | 45.0% | |
| AACCGTCGCTATAGAGTTGA+AGG | + | chr7_2:80959238-80959257 | None:intergenic | 45.0% | |
| CCATGAAGGAACACAATCAC+TGG | + | chr7_2:80959410-80959429 | None:intergenic | 45.0% | |
| CCAGTGATTGTGTTCCTTCA+TGG | - | chr7_2:80959407-80959426 | Msa1081170:CDS | 45.0% | |
| GTGATTGTGTTCCTTCATGG+TGG | - | chr7_2:80959410-80959429 | Msa1081170:CDS | 45.0% | |
| ATTGTGTTCCTTCATGGTGG+AGG | - | chr7_2:80959413-80959432 | Msa1081170:CDS | 45.0% | |
| AACAAAAGCCTCCACCATGA+AGG | + | chr7_2:80959424-80959443 | None:intergenic | 45.0% | |
| !! | CATGGTGGAGGCTTTTGTTT+CGG | - | chr7_2:80959425-80959444 | Msa1081170:CDS | 45.0% |
| TGTGAATATGGGGCCATGTA+CGG | + | chr7_2:80959454-80959473 | None:intergenic | 45.0% | |
| TCAACATCACTGGTCAACCA+TGG | + | chr7_2:80959632-80959651 | None:intergenic | 45.0% | |
| ATTATGGGTGACTCTTCTGG+CGG | - | chr7_2:80959668-80959687 | Msa1081170:CDS | 45.0% | |
| !! | TCGGTTTGGATTGGATCGAA+CGG | - | chr7_2:80959715-80959734 | Msa1081170:intron | 45.0% |
| !!! | GTTTTGTTGGCGCCGTTTTT+TGG | - | chr7_2:80959767-80959786 | Msa1081170:intron | 45.0% |
| CTTGACTTACTAGACAGGTG+AGG | - | chr7_2:80959842-80959861 | Msa1081170:intron | 45.0% | |
| TTACCTACGTCCATGGCTAT+TGG | + | chr7_2:80960572-80960591 | None:intergenic | 45.0% | |
| ! | AACAACTTTAGGTGGTGCCA+TGG | - | chr7_2:80961336-80961355 | Msa1081170:intron | 45.0% |
| GCGACATCATGAGAAACTTG+TGG | - | chr7_2:80961370-80961389 | Msa1081170:intron | 45.0% | |
| TGATCTCTACTCTCTCCAAC+AGG | + | chr7_2:80961811-80961830 | None:intergenic | 45.0% | |
| CATCCATTGGCGAATCCATT+TGG | - | chr7_2:80961829-80961848 | Msa1081170:CDS | 45.0% | |
| ! | TGTCCAAATGGATTCGCCAA+TGG | + | chr7_2:80961835-80961854 | None:intergenic | 45.0% |
| TTGGCGAATCCATTTGGACA+TGG | - | chr7_2:80961835-80961854 | Msa1081170:CDS | 45.0% | |
| !! | CCCATTTTGGTGATAGTTGG+TGG | - | chr7_2:80961889-80961908 | Msa1081170:CDS | 45.0% |
| GCCACCAACTATCACCAAAA+TGG | + | chr7_2:80961893-80961912 | None:intergenic | 45.0% | |
| ! | AGTTTGAGGGGTGTGAACAT+GGG | - | chr7_2:80961989-80962008 | Msa1081170:CDS | 45.0% |
| !! | ATACAATAATATATATAATA+TGG | - | chr7_2:80959175-80959194 | Msa1081170:three_prime_UTR | 5.0% |
| !! | TACAATAATATATATAATAT+GGG | - | chr7_2:80959176-80959195 | Msa1081170:three_prime_UTR | 5.0% |
| ATCCTCTACTACGTGGGGAA+GGG | + | chr7_2:80959204-80959223 | None:intergenic | 50.0% | |
| AATCCTCTACTACGTGGGGA+AGG | + | chr7_2:80959205-80959224 | None:intergenic | 50.0% | |
| CCATGCAATCCTCTACTACG+TGG | + | chr7_2:80959211-80959230 | None:intergenic | 50.0% | |
| CCACGTAGTAGAGGATTGCA+TGG | - | chr7_2:80959208-80959227 | Msa1081170:three_prime_UTR | 50.0% | |
| TTTGTTTCGGCTCCCGTACA+TGG | - | chr7_2:80959438-80959457 | Msa1081170:CDS | 50.0% | |
| GTGAATATGGGGCCATGTAC+GGG | + | chr7_2:80959453-80959472 | None:intergenic | 50.0% | |
| TGTTGTATGAGTCTAGCCGC+TGG | - | chr7_2:80959476-80959495 | Msa1081170:CDS | 50.0% | |
| CATCAATTGCCGCTGGAAGA+CGG | + | chr7_2:80959550-80959569 | None:intergenic | 50.0% | |
| ACAGCATCATCAATTGCCGC+TGG | + | chr7_2:80959557-80959576 | None:intergenic | 50.0% | |
| ATGATGCTGTCGAAGCTGTG+AGG | - | chr7_2:80959567-80959586 | Msa1081170:CDS | 50.0% | |
| AAGCTGTGAGGTGGCTTCAA+AGG | - | chr7_2:80959579-80959598 | Msa1081170:CDS | 50.0% | |
| ACCATGGCTCTCCATAACCA+TGG | + | chr7_2:80959616-80959635 | None:intergenic | 50.0% | |
| TTATGGGTGACTCTTCTGGC+GGG | - | chr7_2:80959669-80959688 | Msa1081170:CDS | 50.0% | |
| GAATATTGCTCACCAGCTCG+CGG | - | chr7_2:80959691-80959710 | Msa1081170:intron | 50.0% | |
| !!! | TTGTTGGCGCCGTTTTTTGG+CGG | - | chr7_2:80959770-80959789 | Msa1081170:intron | 50.0% |
| CGTACTTCCCCGCCAAAAAA+CGG | + | chr7_2:80959782-80959801 | None:intergenic | 50.0% | |
| !!! | CGTTTTTTGGCGGGGAAGTA+CGG | - | chr7_2:80959780-80959799 | Msa1081170:intron | 50.0% |
| ! | GGAAGTACGGACCAAATCTG+AGG | - | chr7_2:80959793-80959812 | Msa1081170:intron | 50.0% |
| GTACGGACCAAATCTGAGGA+AGG | - | chr7_2:80959797-80959816 | Msa1081170:intron | 50.0% | |
| TGGAGGACCTTCCTCAGATT+TGG | + | chr7_2:80959807-80959826 | None:intergenic | 50.0% | |
| AGAATGTTAACCAGTGCCCC+TGG | - | chr7_2:80960978-80960997 | Msa1081170:intron | 50.0% | |
| GAATGTTAACCAGTGCCCCT+GGG | - | chr7_2:80960979-80960998 | Msa1081170:intron | 50.0% | |
| CTGCTTAACCAATGTCCCAG+GGG | + | chr7_2:80960997-80961016 | None:intergenic | 50.0% | |
| GCTGCTTAACCAATGTCCCA+GGG | + | chr7_2:80960998-80961017 | None:intergenic | 50.0% | |
| AGCTGCTTAACCAATGTCCC+AGG | + | chr7_2:80960999-80961018 | None:intergenic | 50.0% | |
| GTTTCTCATGATGTCGCGTG+TGG | + | chr7_2:80961367-80961386 | None:intergenic | 50.0% | |
| TGGAGGTTGTCAATGCCTGT+TGG | - | chr7_2:80961793-80961812 | Msa1081170:CDS | 50.0% | |
| GGGCTGCAAACTATGCAACA+AGG | - | chr7_2:80961932-80961951 | Msa1081170:CDS | 50.0% | |
| ! | GAGTTTGAGGGGTGTGAACA+TGG | - | chr7_2:80961988-80962007 | Msa1081170:CDS | 50.0% |
| TTCCCTTCCCCACGTAGTAG+AGG | - | chr7_2:80959199-80959218 | Msa1081170:three_prime_UTR | 55.0% | |
| CACCAGTGCTTGAAGTCCAG+CGG | + | chr7_2:80959495-80959514 | None:intergenic | 55.0% | |
| !! | TCAAGCACTGGTGGTTGCAC+CGG | - | chr7_2:80959502-80959521 | Msa1081170:CDS | 55.0% |
| ATGCTGTCGAAGCTGTGAGG+TGG | - | chr7_2:80959570-80959589 | Msa1081170:CDS | 55.0% | |
| TGTGAGGTGGCTTCAAAGGC+AGG | - | chr7_2:80959583-80959602 | Msa1081170:CDS | 55.0% | |
| GTGAGGTGGCTTCAAAGGCA+GGG | - | chr7_2:80959584-80959603 | Msa1081170:CDS | 55.0% | |
| TGAGGTGGCTTCAAAGGCAG+GGG | - | chr7_2:80959585-80959604 | Msa1081170:CDS | 55.0% | |
| CAGGGGTTGAGCCATGGTTA+TGG | - | chr7_2:80959602-80959621 | Msa1081170:CDS | 55.0% | |
| GCCATGGTTATGGAGAGCCA+TGG | - | chr7_2:80959612-80959631 | Msa1081170:CDS | 55.0% | |
| !!! | TGTTGGCGCCGTTTTTTGGC+GGG | - | chr7_2:80959771-80959790 | Msa1081170:intron | 55.0% |
| ! | ACGTCCATGGCTATTGGCCT+TGG | + | chr7_2:80960566-80960585 | None:intergenic | 55.0% |
| AGGCCAATAGCCATGGACGT+AGG | - | chr7_2:80960566-80960585 | Msa1081170:intron | 55.0% | |
| GCACGTCACTCTCCCAGATA+AGG | + | chr7_2:80960643-80960662 | None:intergenic | 55.0% | |
| !! | TGGTTACGGGGCACTGGTTA+AGG | + | chr7_2:80961116-80961135 | None:intergenic | 55.0% |
| TCTTGTTAACCAGTGCCCCC+GGG | + | chr7_2:80961143-80961162 | None:intergenic | 55.0% | |
| ! | GTCTTGTTAACCAGTGCCCC+CGG | + | chr7_2:80961144-80961163 | None:intergenic | 55.0% |
| TCTCATGATGTCGCGTGTGG+TGG | + | chr7_2:80961364-80961383 | None:intergenic | 55.0% | |
| AGCCGCTGGACTTCAAGCAC+TGG | - | chr7_2:80959490-80959509 | Msa1081170:CDS | 60.0% | |
| !! | CGCTGGACTTCAAGCACTGG+TGG | - | chr7_2:80959493-80959512 | Msa1081170:CDS | 60.0% |
| TGGTGGTTGCACCGGACTAC+CGG | - | chr7_2:80959510-80959529 | Msa1081170:CDS | 60.0% | |
| TCTGGTGCAAGCCGGTAGTC+CGG | + | chr7_2:80959524-80959543 | None:intergenic | 60.0% | |
| !! | ACCAGAGCACCGTCTTCCAG+CGG | - | chr7_2:80959538-80959557 | Msa1081170:CDS | 60.0% |
| CAAAGGCAGGGGTTGAGCCA+TGG | - | chr7_2:80959596-80959615 | Msa1081170:CDS | 60.0% | |
| TTGCTCACCAGCTCGCGGTT+CGG | - | chr7_2:80959696-80959715 | Msa1081170:intron | 60.0% | |
| ATCCAAACCGAACCGCGAGC+TGG | + | chr7_2:80959706-80959725 | None:intergenic | 60.0% | |
| !! | GCTCGCGGTTCGGTTTGGAT+TGG | - | chr7_2:80959706-80959725 | Msa1081170:intron | 60.0% |
| !!! | GTTGGCGCCGTTTTTTGGCG+GGG | - | chr7_2:80959772-80959791 | Msa1081170:intron | 60.0% |
| CTGGCCAAGGCCAATAGCCA+TGG | - | chr7_2:80960559-80960578 | Msa1081170:intron | 60.0% | |
| AACCAGTGCCCCTGGGACAT+TGG | - | chr7_2:80960986-80961005 | Msa1081170:intron | 60.0% | |
| ! | AACCAATGTCCCAGGGGCAC+TGG | + | chr7_2:80960991-80961010 | None:intergenic | 60.0% |
| CTTGTTAACCAGTGCCCCCG+GGG | + | chr7_2:80961142-80961161 | None:intergenic | 60.0% | |
| GACGGTGCTCTGGTGCAAGC+CGG | + | chr7_2:80959532-80959551 | None:intergenic | 65.0% | |
| !! | CACCAGCTCGCGGTTCGGTT+TGG | - | chr7_2:80959701-80959720 | Msa1081170:intron | 65.0% |
| ! | TGTCGCGTGTGGTGGTGCCA+TGG | + | chr7_2:80961356-80961375 | None:intergenic | 65.0% |
| GCCGCTGGAAGACGGTGCTC+TGG | + | chr7_2:80959542-80959561 | None:intergenic | 70.0% | |
| !! | GGGCACTGGTTACGGGGCAC+TGG | + | chr7_2:80961122-80961141 | None:intergenic | 70.0% |
| GTGCCCCGTAACCAGTGCCC+CGG | - | chr7_2:80961122-80961141 | Msa1081170:intron | 70.0% | |
| TGCCCCGTAACCAGTGCCCC+GGG | - | chr7_2:80961123-80961142 | Msa1081170:intron | 70.0% | |
| !! | TGCCCCCGGGGCACTGGTTA+CGG | + | chr7_2:80961130-80961149 | None:intergenic | 70.0% |
| GCCCCGTAACCAGTGCCCCG+GGG | - | chr7_2:80961124-80961143 | Msa1081170:intron | 75.0% | |
| !! | CCCCCGGGGCACTGGTTACG+GGG | + | chr7_2:80961128-80961147 | None:intergenic | 75.0% |
| CCCCGTAACCAGTGCCCCGG+GGG | - | chr7_2:80961125-80961144 | Msa1081170:intron | 75.0% | |
| !! | GCCCCCGGGGCACTGGTTAC+GGG | + | chr7_2:80961129-80961148 | None:intergenic | 75.0% |
| ! | AACCAGTGCCCCGGGGGCAC+TGG | - | chr7_2:80961131-80961150 | Msa1081170:intron | 75.0% |
| AACCAGTGCCCCCGGGGCAC+TGG | + | chr7_2:80961136-80961155 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 80959123 | 80962355 | 80959123 | ID=Msa1081170;Name=Msa1081170 |
| chr7_2 | mRNA | 80959123 | 80962355 | 80959123 | ID=Msa1081170-mRNA-1;Parent=Msa1081170;Name=Msa1081170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=71|1|1|1|1|1|2|260|323 |
| chr7_2 | exon | 80959123 | 80959689 | 80959123 | ID=Msa1081170-mRNA-1:exon:20611;Parent=Msa1081170-mRNA-1 |
| chr7_2 | exon | 80961620 | 80962355 | 80961620 | ID=Msa1081170-mRNA-1:exon:20610;Parent=Msa1081170-mRNA-1 |
| chr7_2 | five_prime_UTR | 80962285 | 80962355 | 80962285 | ID=Msa1081170-mRNA-1:five_prime_utr;Parent=Msa1081170-mRNA-1 |
| chr7_2 | CDS | 80961620 | 80962284 | 80961620 | ID=Msa1081170-mRNA-1:cds;Parent=Msa1081170-mRNA-1 |
| chr7_2 | CDS | 80959383 | 80959689 | 80959383 | ID=Msa1081170-mRNA-1:cds;Parent=Msa1081170-mRNA-1 |
| chr7_2 | three_prime_UTR | 80959123 | 80959382 | 80959123 | ID=Msa1081170-mRNA-1:three_prime_utr;Parent=Msa1081170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
