AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0036550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036550 MtrunA17_Chr1g0199091 97.579 537 9 1 1 537 1 533 0.0 1086
Msa0036550 MtrunA17_Chr2g0280631 48.649 148 66 5 394 536 272 414 4.83e-31 125
Msa0036550 MtrunA17_Chr6g0486111 44.586 157 58 4 403 533 167 320 8.07e-31 122
Msa0036550 MtrunA17_Chr8g0361501 45.625 160 80 4 377 535 290 443 4.99e-30 122
Msa0036550 MtrunA17_Chr2g0318971 50.769 130 61 2 404 533 308 434 8.42e-30 121
Msa0036550 MtrunA17_Chr2g0331431 44.805 154 51 5 409 531 175 325 4.17e-28 114
Msa0036550 MtrunA17_Chr8g0390301 42.236 161 56 4 403 533 180 333 1.09e-27 114
Msa0036550 MtrunA17_Chr3g0141841 47.101 138 68 3 384 517 299 435 3.55e-27 114
Msa0036550 MtrunA17_Chr1g0207771 44.853 136 61 3 409 533 141 273 5.53e-27 110
Msa0036550 MtrunA17_Chr4g0045561 50.000 102 41 3 428 529 59 150 1.14e-21 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036550 AT1G31050.6 51.208 207 90 5 335 537 239 438 4.17e-52 184
Msa0036550 AT1G31050.1 51.208 207 86 6 335 537 239 434 1.25e-50 179
Msa0036550 AT1G31050.7 51.232 203 84 6 335 533 239 430 1.61e-48 174
Msa0036550 AT1G31050.8 43.961 207 79 7 335 537 239 412 2.39e-35 137
Msa0036550 AT3G19500.1 49.612 129 57 5 409 533 135 259 6.22e-27 110
Msa0036550 AT1G27660.1 49.565 115 53 2 402 513 311 423 8.92e-27 113
Msa0036550 AT3G20640.1 37.912 182 88 5 355 535 296 453 2.14e-26 112
Msa0036550 AT1G61660.7 42.775 173 84 5 377 537 224 393 2.45e-26 111
Msa0036550 AT1G61660.1 42.775 173 84 5 377 537 224 393 2.45e-26 111
Msa0036550 AT3G20640.4 37.912 182 88 5 355 535 234 391 2.53e-26 111
Msa0036550 AT4G29100.1 43.312 157 52 7 409 531 248 401 1.39e-25 109
Msa0036550 AT2G20100.1 42.308 156 54 5 409 531 205 357 2.08e-25 108
Msa0036550 AT1G61660.3 41.765 170 87 4 377 537 224 390 4.96e-25 107
Msa0036550 AT2G31730.2 50.485 103 41 3 428 530 42 134 1.43e-24 100
Msa0036550 AT2G31730.1 50.485 103 41 3 428 530 42 134 1.43e-24 100
Msa0036550 AT1G05710.6 43.651 126 56 3 405 530 14 124 4.00e-24 98.6
Msa0036550 AT1G05710.11 43.651 126 56 3 405 530 22 132 4.05e-24 99.0
Msa0036550 AT1G05710.5 43.651 126 56 3 405 530 22 132 4.05e-24 99.0
Msa0036550 AT1G05710.1 43.651 126 56 3 405 530 22 132 4.05e-24 99.0
Msa0036550 AT1G05710.14 43.651 126 56 3 405 530 22 132 4.05e-24 99.0
Msa0036550 AT1G05710.3 43.651 126 56 3 405 530 22 132 4.05e-24 99.0
Msa0036550 AT1G05710.4 43.651 126 56 3 405 530 22 132 4.05e-24 99.0
Msa0036550 AT1G05710.12 43.651 126 56 3 405 530 22 132 4.05e-24 99.0
Msa0036550 AT1G31050.5 47.445 137 65 3 335 470 239 369 6.99e-24 103
Msa0036550 AT1G31050.2 47.445 137 61 4 335 470 239 365 1.61e-22 99.8
Msa0036550 AT4G05170.3 46.970 132 50 4 398 511 23 152 1.80e-21 92.4
Msa0036550 AT4G05170.2 36.797 231 113 9 309 511 45 270 2.21e-21 95.1
Msa0036550 AT4G05170.1 36.957 230 112 9 309 510 63 287 2.30e-21 95.5
Msa0036550 AT4G05170.5 45.588 136 54 4 393 510 111 244 6.71e-21 93.2
Msa0036550 AT4G05170.7 40.437 183 87 7 309 474 45 222 1.73e-20 91.3
Msa0036550 AT1G05710.9 37.838 148 55 4 405 530 14 146 5.89e-20 87.4
Msa0036550 AT1G05710.8 37.838 148 55 4 405 530 14 146 5.89e-20 87.4
Msa0036550 AT1G05710.13 37.838 148 55 4 405 530 22 154 6.34e-20 87.8
Msa0036550 AT1G05710.2 37.838 148 55 4 405 530 22 154 6.34e-20 87.8
Msa0036550 AT1G05710.10 37.838 148 55 4 405 530 22 154 6.34e-20 87.8
Msa0036550 AT1G05710.7 37.838 148 55 4 405 530 22 154 6.34e-20 87.8
Msa0036550 AT4G21340.1 43.609 133 57 5 397 514 157 286 1.14e-19 90.1
Msa0036550 AT1G49830.2 48.454 97 46 2 435 531 133 225 9.83e-19 86.3
Msa0036550 AT1G49830.1 48.454 97 46 2 435 531 134 226 1.04e-18 86.3
Msa0036550 AT4G05170.6 39.011 182 89 7 309 473 45 221 2.68e-18 84.3
Msa0036550 AT4G05170.4 39.011 182 89 7 309 473 45 221 2.68e-18 84.3
Msa0036550 AT1G61660.6 47.748 111 46 3 377 477 224 332 7.59e-18 85.5
Msa0036550 AT1G61660.2 47.748 111 46 3 377 477 224 332 7.59e-18 85.5
Msa0036550 AT3G20640.3 39.683 126 54 3 355 480 296 399 5.92e-17 83.6
Msa0036550 AT3G19500.2 52.113 71 31 1 409 476 135 205 9.17e-17 80.1
Msa0036550 AT4G29100.2 46.939 98 44 3 385 476 219 314 3.06e-16 80.9
Msa0036550 AT2G20100.4 57.353 68 27 1 409 476 205 270 7.48e-16 79.0
Msa0036550 AT2G20100.2 57.353 68 27 1 409 476 205 270 7.48e-16 79.0
Msa0036550 AT1G61660.4 36.527 167 81 6 377 537 224 371 9.67e-16 79.3
Msa0036550 AT2G20100.3 57.353 68 27 1 409 476 205 270 2.49e-15 78.6
Msa0036550 AT1G31050.3 43.478 115 58 3 335 448 239 347 2.53e-14 75.1
Msa0036550 AT1G31050.4 43.478 115 54 4 335 448 239 343 6.64e-13 70.9
Msa0036550 AT3G20640.2 37.931 116 50 3 355 470 296 389 9.64e-13 70.5

Find 129 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTCTCTTTCTTCAAAT+TGG 0.120203 1_1:+65144737 Msa0036550:CDS
TCACAAGAAGAGGAAGAATT+TGG 0.217219 1_1:-65144799 None:intergenic
AGAAATTCTCTCCAATTTCT+TGG 0.226035 1_1:-65145613 None:intergenic
TGAAGATACCACCAGTTTAA+TGG 0.227878 1_1:-65144712 None:intergenic
CCTTCCAAGCCTACTATTAA+AGG 0.229635 1_1:-65146281 None:intergenic
GGTAGTTTGAAATGACAATT+AGG 0.230715 1_1:-65145980 None:intergenic
TTGTTAGTGATTCCTTTAAT+TGG 0.238465 1_1:-65144605 None:intergenic
GAGCTTCACTGTACCCATTT+AGG 0.248704 1_1:-65145775 None:intergenic
TTGTCTCCTAGCTTGACTTT+AGG 0.249029 1_1:-65147094 None:intergenic
TGTTCTCTCTATAAACTATA+GGG 0.281744 1_1:-65148581 None:intergenic
TCCCTCTCCTCTTCCATTAG+TGG 0.281990 1_1:-65146826 None:intergenic
TGTCATTTCAAACTACCTTT+TGG 0.288080 1_1:+65145986 Msa0036550:CDS
TTGCACAACAACCAAGAAAT+TGG 0.289698 1_1:+65145602 Msa0036550:CDS
AAGTTTGAGTATCTCATATT+AGG 0.290538 1_1:-65146331 None:intergenic
TTGTTCTCTCTATAAACTAT+AGG 0.291074 1_1:-65148582 None:intergenic
AGATCCATTCCACCAATTAA+AGG 0.292296 1_1:+65144593 Msa0036550:five_prime_UTR
AAGAATTTGGATTATTCATT+TGG 0.300698 1_1:-65144786 None:intergenic
CAACAAATTGTGTCTCCATT+TGG 0.320532 1_1:+65147130 Msa0036550:CDS
TAATTCTAATTCCTCCAATA+TGG 0.332844 1_1:+65145928 Msa0036550:CDS
AGAAATTGGAGAGAATTTCT+TGG 0.337223 1_1:+65145616 Msa0036550:CDS
ATGTTATATCCTTTAATAGT+AGG 0.338011 1_1:+65146272 Msa0036550:CDS
AATCCAAATGGATTTCTTGA+TGG 0.341712 1_1:+65146157 Msa0036550:CDS
ACTATAATTTGCTAGAATCT+TGG 0.352861 1_1:+65148711 Msa0036550:three_prime_UTR
ACCTTCCTCCAACGACTTCA+TGG 0.368605 1_1:+65144927 Msa0036550:CDS
AGAACAATGGACCAGATTAC+TGG 0.373771 1_1:+65148598 Msa0036550:CDS
TGTGAATTTGCCTTCAAGTA+AGG 0.376170 1_1:-65148344 None:intergenic
TCAAAGTGGCTACTAACTTC+AGG 0.382319 1_1:-65145869 None:intergenic
AAAATAATTTATAGAGGTGT+TGG 0.384583 1_1:+65145566 Msa0036550:intron
TTGGTGCATGGTGAAATATT+TGG 0.392516 1_1:-65146238 None:intergenic
TTAATTGGTGGAATGGATCT+AGG 0.393658 1_1:-65144590 None:intergenic
AACCCATCAAGAAATCCATT+TGG 0.394816 1_1:-65146160 None:intergenic
TATAGAGGTGTTGGATCAAA+TGG 0.395514 1_1:+65145575 Msa0036550:intron
GTTGTTGAAGTATCTTGCTT+AGG 0.402645 1_1:-65146909 None:intergenic
ATGCTTCGGATAACCAACTA+TGG 0.408893 1_1:+65144956 Msa0036550:CDS
AGAAAATCACTTAATCCAAA+TGG 0.413099 1_1:+65146145 Msa0036550:CDS
TGATATTCAAGACATGAATA+AGG 0.417390 1_1:+65146069 Msa0036550:CDS
AGACCAAGTGCTTACAAGAT+TGG 0.417683 1_1:-65145831 None:intergenic
GTAGTTTGAAATGACAATTA+GGG 0.422857 1_1:-65145979 None:intergenic
TACGCTGGTGTCCAGTAATC+TGG 0.425230 1_1:-65148609 None:intergenic
CGTATAGAGGATGTATGTAT+AGG 0.435878 1_1:+65148628 Msa0036550:CDS
CCTCTACTACTCCATTAAAC+TGG 0.438226 1_1:+65144701 Msa0036550:CDS
CTTCATGGCCGAACATGCTT+CGG 0.438443 1_1:+65144942 Msa0036550:CDS
TTGGTTATCCGAAGCATGTT+CGG 0.438578 1_1:-65144950 None:intergenic
ATTCAACAGTGAGGCTTGAA+TGG 0.438689 1_1:-65144870 None:intergenic
TATCTCATATTAGGCCTTTG+TGG 0.439058 1_1:-65146322 None:intergenic
ACTGAGCAACCCTTACTTGA+AGG 0.440093 1_1:+65148334 Msa0036550:CDS
ATCCAAATGGATTTCTTGAT+GGG 0.447532 1_1:+65146158 Msa0036550:CDS
TGTGGATGGATTCCAACAAC+TGG 0.457135 1_1:-65146304 None:intergenic
TTAGTGATTCCTTTAATTGG+TGG 0.459239 1_1:-65144602 None:intergenic
TGTGATCTCCCACTGAGTTA+AGG 0.459782 1_1:-65146192 None:intergenic
GATTCCTTTAATTGGTGGAA+TGG 0.462105 1_1:-65144597 None:intergenic
CTATCGAAGTAGCTTCCCCT+TGG 0.464932 1_1:-65148489 None:intergenic
TATTCATGTCTTGAATATCA+TGG 0.469820 1_1:-65146066 None:intergenic
ATGCAGATGAGAACCACTAA+TGG 0.471394 1_1:+65146813 Msa0036550:intron
ATATCCTTTAATAGTAGGCT+TGG 0.476406 1_1:+65146277 Msa0036550:CDS
TACTAACTTCAGGGTCAGGT+GGG 0.477199 1_1:-65145859 None:intergenic
AGGCTTGGAAGGCCAGTTGT+TGG 0.479456 1_1:+65146292 Msa0036550:CDS
AACAGTGAGGCTTGAATGGT+TGG 0.481356 1_1:-65144866 None:intergenic
GAAACTTGATACAACAAGTT+GGG 0.483370 1_1:+65145703 Msa0036550:CDS
TCTTGAATATCATGGCAACT+AGG 0.484654 1_1:-65146058 None:intergenic
TCATATTAGGCCTTTGTGGA+TGG 0.484833 1_1:-65146318 None:intergenic
ATGGAGACACAATTTGTTGA+AGG 0.484969 1_1:-65147126 None:intergenic
TCTGTGCTGTTTGAAGCAAT+AGG 0.485312 1_1:+65147313 Msa0036550:CDS
AACAACAAATTCATCTTCAA+AGG 0.487475 1_1:+65146926 Msa0036550:CDS
AAGCTAGACCTTCGAAGTAA+AGG 0.488325 1_1:+65148531 Msa0036550:CDS
CTACTAACTTCAGGGTCAGG+TGG 0.488776 1_1:-65145860 None:intergenic
AATAATTAATCCAGGATCCA+AGG 0.491479 1_1:+65148472 Msa0036550:intron
CTGTGCTGTTTGAAGCAATA+GGG 0.493656 1_1:+65147314 Msa0036550:CDS
CAAAGTGGCTACTAACTTCA+GGG 0.505301 1_1:-65145868 None:intergenic
TTCTTCAAATAGTCACAAGC+TGG 0.508018 1_1:-65145683 None:intergenic
TGGCTACTAACTTCAGGGTC+AGG 0.508130 1_1:-65145863 None:intergenic
TCTGTAGTAACCTTTCCAAA+TGG 0.515894 1_1:-65147145 None:intergenic
ATAAAACATGACTCCATAGT+TGG 0.516595 1_1:-65144969 None:intergenic
CCTTTAATAGTAGGCTTGGA+AGG 0.519150 1_1:+65146281 Msa0036550:CDS
ATTGGAGAGAATTTCTTGGA+TGG 0.521784 1_1:+65145620 Msa0036550:CDS
AGAAACTTGATACAACAAGT+TGG 0.527132 1_1:+65145702 Msa0036550:CDS
TACTGGACACCAGCGTATAG+AGG 0.530645 1_1:+65148615 Msa0036550:CDS
AACAAAGACCTTTACTTCGA+AGG 0.532863 1_1:-65148539 None:intergenic
AATTGTGTCTCCATTTGGAA+AGG 0.534925 1_1:+65147135 Msa0036550:CDS
AAATTCTTCCTCTTCTTGTG+AGG 0.543566 1_1:+65144801 Msa0036550:CDS
GTGAATTTGCCTTCAAGTAA+GGG 0.548202 1_1:-65148343 None:intergenic
ATCTTGATCCTCACAAGAAG+AGG 0.549474 1_1:-65144809 None:intergenic
GTATTGATGATGATCCATAT+TGG 0.550681 1_1:-65145942 None:intergenic
TATCCAATCTTGTAAGCACT+TGG 0.551774 1_1:+65145828 Msa0036550:CDS
GGAACGATGTTAAACATGCA+TGG 0.552356 1_1:+65144758 Msa0036550:CDS
ATGAGAACCACTAATGGAAG+AGG 0.557286 1_1:+65146819 Msa0036550:CDS
CCAGTTTAATGGAGTAGTAG+AGG 0.559707 1_1:-65144701 None:intergenic
AATAATAGCCTTAACTCAGT+GGG 0.563019 1_1:+65146184 Msa0036550:CDS
CTTGAATATCATGGCAACTA+GGG 0.564915 1_1:-65146057 None:intergenic
TGGAGACACAATTTGTTGAA+GGG 0.569835 1_1:-65147125 None:intergenic
CAAGCACCTAAAGTCAAGCT+AGG 0.570211 1_1:+65147088 Msa0036550:CDS
CATGATGTGGAATCTCCAAA+AGG 0.578793 1_1:-65146001 None:intergenic
TTCGGCCATGAAGTCGTTGG+AGG 0.581056 1_1:-65144932 None:intergenic
GTTCTCTCTATAAACTATAG+GGG 0.582129 1_1:-65148580 None:intergenic
ATAATTAATCCAGGATCCAA+GGG 0.583504 1_1:+65148473 Msa0036550:intron
TTGGAGGAAGGTGGTGCATG+CGG 0.587623 1_1:-65144916 None:intergenic
ACCACTAATGGAAGAGGAGA+GGG 0.589390 1_1:+65146825 Msa0036550:CDS
AGTTGGGAATATAATACTAG+TGG 0.594177 1_1:+65145719 Msa0036550:CDS
GCCATGAAGTCGTTGGAGGA+AGG 0.597276 1_1:-65144928 None:intergenic
CTTGAAGGCAAATTCACACA+AGG 0.597962 1_1:+65148349 Msa0036550:CDS
TTATCTGAGTCAAAGAAACA+AGG 0.598600 1_1:+65146352 Msa0036550:CDS
TTCTCTAATAGTGCATGATG+TGG 0.607686 1_1:-65146014 None:intergenic
ACATCATGCACTATTAGAGA+AGG 0.611496 1_1:+65146016 Msa0036550:CDS
ACTAACTTCAGGGTCAGGTG+GGG 0.612027 1_1:-65145858 None:intergenic
GTATCTTGAAGAGCAAGTCC+AGG 0.612197 1_1:+65147345 Msa0036550:CDS
CTACTTCGATAGAAAAGACA+AGG 0.620057 1_1:+65148500 Msa0036550:CDS
ATGAAGTCGTTGGAGGAAGG+TGG 0.620238 1_1:-65144925 None:intergenic
AACCACTAATGGAAGAGGAG+AGG 0.625336 1_1:+65146824 Msa0036550:CDS
TACATACATCCTCTATACGC+TGG 0.625600 1_1:-65148624 None:intergenic
CTACTACTCCATTAAACTGG+TGG 0.628507 1_1:+65144704 Msa0036550:CDS
CTCTTATTGAGAATAATGAA+AGG 0.630132 1_1:+65145795 Msa0036550:CDS
TGTTTGTTTGTGAATCAAAG+TGG 0.631378 1_1:-65145883 None:intergenic
TAATAATAGCCTTAACTCAG+TGG 0.633565 1_1:+65146183 Msa0036550:CDS
ATGTTCGGCCATGAAGTCGT+TGG 0.634214 1_1:-65144935 None:intergenic
ATCAAACATAGTGTTTGACA+TGG 0.644125 1_1:-65145657 None:intergenic
CTCGACGAACACTCTTCGAG+AGG 0.644553 1_1:-65144893 None:intergenic
TATCTGAGTCAAAGAAACAA+GGG 0.644946 1_1:+65146353 Msa0036550:CDS
ACTATAGGGGTACATGACGT+AGG 0.654815 1_1:-65148567 None:intergenic
CATGCAAGTGAAGTGATGCA+AGG 0.656888 1_1:+65146112 Msa0036550:CDS
TTGATGATGATCCATATTGG+AGG 0.673081 1_1:-65145939 None:intergenic
TGCACTATTAGAGAAGGAGT+AGG 0.675198 1_1:+65146022 Msa0036550:CDS
ATAGTTTATAGAGAGAACAA+TGG 0.682655 1_1:+65148585 Msa0036550:CDS
AACTCAGTGGGAGATCACAA+TGG 0.686157 1_1:+65146196 Msa0036550:CDS
ATAAAGATGAGTGAAGAATG+TGG 0.710534 1_1:+65144661 Msa0036550:exon
TTGTTGGAATCCATCCACAA+AGG 0.714376 1_1:+65146308 Msa0036550:CDS
TTCGAGAGGATTCAACAGTG+AGG 0.716670 1_1:-65144879 None:intergenic
TAATTAATCCAGGATCCAAG+GGG 0.729650 1_1:+65148474 Msa0036550:intron
CTTCGATAGAAAAGACAAGG+AGG 0.751104 1_1:+65148503 Msa0036550:CDS
AAGATGAGTGAAGAATGTGG+TGG 0.756172 1_1:+65144664 Msa0036550:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATTATTGAAATTAAC+TGG + chr1_1:65145138-65145157 Msa0036550:intron 10.0%
!!! TATTTTTTCTTTTTCTTTTA+TGG + chr1_1:65146400-65146419 Msa0036550:intron 10.0%
!!! ATTTTTTCTTTTTCTTTTAT+GGG + chr1_1:65146401-65146420 Msa0036550:intron 10.0%
!!! TTTGTCATTTAAAAAAAATA+TGG - chr1_1:65146513-65146532 None:intergenic 10.0%
!! ATTATTTATACAAAAAAGAT+AGG - chr1_1:65147206-65147225 None:intergenic 10.0%
!!! TTAGTTTATTCATTTTTATA+AGG - chr1_1:65147476-65147495 None:intergenic 10.0%
!!! TTTAGAGTTAATTAAATAAA+TGG - chr1_1:65147846-65147865 None:intergenic 10.0%
!!! TATAAGTTAAAAAGTATATA+TGG - chr1_1:65148012-65148031 None:intergenic 10.0%
!! CTTATGAAAATAATTTATAG+AGG + chr1_1:65145560-65145579 Msa0036550:intron 15.0%
!! TCAAAATATAGGTATAAAAA+TGG - chr1_1:65146485-65146504 None:intergenic 15.0%
!!! TTGTCTAATATATATTTTAC+CGG - chr1_1:65146576-65146595 None:intergenic 15.0%
!!! TTCATTTAACTATTTTAGTA+TGG + chr1_1:65146705-65146724 Msa0036550:intron 15.0%
!! TAAATTGATTATTATGAAGT+AGG - chr1_1:65147255-65147274 None:intergenic 15.0%
!! AAATGATCCATATAAATATT+CGG + chr1_1:65147621-65147640 Msa0036550:intron 15.0%
!! ATAATAATTAAGAACGTAAA+AGG - chr1_1:65148308-65148327 None:intergenic 15.0%
!! AAGAATTTGGATTATTCATT+TGG - chr1_1:65144789-65144808 None:intergenic 20.0%
!! AACATCAAATATATAGCATA+TGG - chr1_1:65145110-65145129 None:intergenic 20.0%
!!! TAGAAATTTTGTGAAGTTTA+AGG + chr1_1:65145201-65145220 Msa0036550:intron 20.0%
!!! AGAAATTTTGTGAAGTTTAA+GGG + chr1_1:65145202-65145221 Msa0036550:intron 20.0%
!!! TGTTTTAAGTTAGGTATATA+GGG + chr1_1:65145225-65145244 Msa0036550:intron 20.0%
!! TGAGTAAATAATATTCTTCT+AGG + chr1_1:65145276-65145295 Msa0036550:intron 20.0%
!!! AAAATAATTTATAGAGGTGT+TGG + chr1_1:65145566-65145585 Msa0036550:intron 20.0%
!!! TATAACATCAGAGAAATTTT+TGG - chr1_1:65146260-65146279 None:intergenic 20.0%
!! ATGTTATATCCTTTAATAGT+AGG + chr1_1:65146272-65146291 Msa0036550:CDS 20.0%
!! AAAGAAAAAATAACTCACAT+GGG - chr1_1:65146392-65146411 None:intergenic 20.0%
!! AAAAGAAAAAATAACTCACA+TGG - chr1_1:65146393-65146412 None:intergenic 20.0%
!!! TTTTATACCTATATTTTGAG+AGG + chr1_1:65146486-65146505 Msa0036550:intron 20.0%
!!! CGCTAATTCATATATTTTTT+TGG - chr1_1:65146601-65146620 None:intergenic 20.0%
!! TGTAAAAAAGTCATATAAAG+TGG + chr1_1:65147000-65147019 Msa0036550:intron 20.0%
!! GTAAAAAAGTCATATAAAGT+GGG + chr1_1:65147001-65147020 Msa0036550:intron 20.0%
!! TAAAAAAGTCATATAAAGTG+GGG + chr1_1:65147002-65147021 Msa0036550:intron 20.0%
!!! ACTTCTATTGATTGTTTAAA+AGG + chr1_1:65147063-65147082 Msa0036550:intron 20.0%
!! AAAAAAGATAGGAATGAAAA+GGG - chr1_1:65147195-65147214 None:intergenic 20.0%
!! ACATATAATGCATAATGAAT+GGG - chr1_1:65147393-65147412 None:intergenic 20.0%
!! TACATATAATGCATAATGAA+TGG - chr1_1:65147394-65147413 None:intergenic 20.0%
!! TATAAGGAACTAATAATCAT+AGG - chr1_1:65147460-65147479 None:intergenic 20.0%
!!! ATTAACCCTAGATTTTAATT+AGG - chr1_1:65147596-65147615 None:intergenic 20.0%
!! ACGAAATTGTCATTATTTAT+AGG + chr1_1:65147818-65147837 Msa0036550:intron 20.0%
!! CGAAATTGTCATTATTTATA+GGG + chr1_1:65147819-65147838 Msa0036550:intron 20.0%
!! ATTGACATAATAATTAATCC+AGG + chr1_1:65148464-65148483 Msa0036550:intron 20.0%
! TTGTTAGTGATTCCTTTAAT+TGG - chr1_1:65144608-65144627 None:intergenic 25.0%
! CAAATTCTCTTTCTTCAAAT+TGG + chr1_1:65144737-65144756 Msa0036550:CDS 25.0%
!!! GACAAATCTTTTAGAGTTTT+AGG + chr1_1:65145177-65145196 Msa0036550:intron 25.0%
!!! GTGTTTTAAGTTAGGTATAT+AGG + chr1_1:65145224-65145243 Msa0036550:intron 25.0%
!!! TTATAGATAGTGGAAAACAA+AGG - chr1_1:65145302-65145321 None:intergenic 25.0%
! CTCTTATTGAGAATAATGAA+AGG + chr1_1:65145795-65145814 Msa0036550:CDS 25.0%
! TAATTCTAATTCCTCCAATA+TGG + chr1_1:65145928-65145947 Msa0036550:CDS 25.0%
!! GTAGTTTGAAATGACAATTA+GGG - chr1_1:65145982-65146001 None:intergenic 25.0%
! TATTCATGTCTTGAATATCA+TGG - chr1_1:65146069-65146088 None:intergenic 25.0%
! TGATATTCAAGACATGAATA+AGG + chr1_1:65146069-65146088 Msa0036550:CDS 25.0%
! AGAAAATCACTTAATCCAAA+TGG + chr1_1:65146145-65146164 Msa0036550:CDS 25.0%
!! ACAATGGCAAATTTTATGAA+GGG + chr1_1:65146212-65146231 Msa0036550:CDS 25.0%
! AAGTTTGAGTATCTCATATT+AGG - chr1_1:65146334-65146353 None:intergenic 25.0%
! TTGTCTCTATAAATTAGACA+TGG + chr1_1:65146650-65146669 Msa0036550:intron 25.0%
! AACAACAAATTCATCTTCAA+AGG + chr1_1:65146926-65146945 Msa0036550:CDS 25.0%
! AAAAAGATAGGAATGAAAAG+GGG - chr1_1:65147194-65147213 None:intergenic 25.0%
! CAAAAAAGATAGGAATGAAA+AGG - chr1_1:65147196-65147215 None:intergenic 25.0%
! AGATGACCTAATTAAAATCT+AGG + chr1_1:65147587-65147606 Msa0036550:intron 25.0%
! GATGACCTAATTAAAATCTA+GGG + chr1_1:65147588-65147607 Msa0036550:intron 25.0%
! CGAAATTCCGAATATTTATA+TGG - chr1_1:65147631-65147650 None:intergenic 25.0%
!!! AAGTGCACTTTTATTTTGTA+GGG - chr1_1:65147662-65147681 None:intergenic 25.0%
!!! AAAGTGCACTTTTATTTTGT+AGG - chr1_1:65147663-65147682 None:intergenic 25.0%
!! AAAAATTCTATGAGCACTTT+TGG + chr1_1:65147727-65147746 Msa0036550:intron 25.0%
! AAGCTAACAAAAAATGTTAC+TGG + chr1_1:65147758-65147777 Msa0036550:intron 25.0%
! AGCTAACAAAAAATGTTACT+GGG + chr1_1:65147759-65147778 Msa0036550:intron 25.0%
!!! TGCAATTTTGTAATTTGTAG+CGG - chr1_1:65147921-65147940 None:intergenic 25.0%
! TGATCATTTCAGTCATAATT+TGG + chr1_1:65148155-65148174 Msa0036550:intron 25.0%
! TGTTCTCTCTATAAACTATA+GGG - chr1_1:65148584-65148603 None:intergenic 25.0%
! TTGTTCTCTCTATAAACTAT+AGG - chr1_1:65148585-65148604 None:intergenic 25.0%
! ATAGTTTATAGAGAGAACAA+TGG + chr1_1:65148585-65148604 Msa0036550:CDS 25.0%
!! ATACAACCACATACTATTTT+TGG - chr1_1:65148683-65148702 None:intergenic 25.0%
!!! ACTATAATTTGCTAGAATCT+TGG + chr1_1:65148711-65148730 Msa0036550:three_prime_UTR 25.0%
TTAGTGATTCCTTTAATTGG+TGG - chr1_1:65144605-65144624 None:intergenic 30.0%
ATAAAGATGAGTGAAGAATG+TGG + chr1_1:65144661-65144680 Msa0036550:exon 30.0%
ATAAAACATGACTCCATAGT+TGG - chr1_1:65144972-65144991 None:intergenic 30.0%
!!! GTTTAAGGGTGTTTTAAGTT+AGG + chr1_1:65145216-65145235 Msa0036550:intron 30.0%
AAGTTAGGTATATAGGGTTA+AGG + chr1_1:65145231-65145250 Msa0036550:intron 30.0%
TGTTAGCATGTTATAGATAG+TGG - chr1_1:65145312-65145331 None:intergenic 30.0%
ATATCTAACAGAATCCAAGA+GGG - chr1_1:65145434-65145453 None:intergenic 30.0%
TATATCTAACAGAATCCAAG+AGG - chr1_1:65145435-65145454 None:intergenic 30.0%
AGAAATTCTCTCCAATTTCT+TGG - chr1_1:65145616-65145635 None:intergenic 30.0%
AGAAATTGGAGAGAATTTCT+TGG + chr1_1:65145616-65145635 Msa0036550:CDS 30.0%
ATCAAACATAGTGTTTGACA+TGG - chr1_1:65145660-65145679 None:intergenic 30.0%
AGAAACTTGATACAACAAGT+TGG + chr1_1:65145702-65145721 Msa0036550:CDS 30.0%
GAAACTTGATACAACAAGTT+GGG + chr1_1:65145703-65145722 Msa0036550:CDS 30.0%
AGTTGGGAATATAATACTAG+TGG + chr1_1:65145719-65145738 Msa0036550:CDS 30.0%
!!! AATTTTGAGAAGCACCTAAA+TGG + chr1_1:65145761-65145780 Msa0036550:CDS 30.0%
!!! ATTTTGAGAAGCACCTAAAT+GGG + chr1_1:65145762-65145781 Msa0036550:CDS 30.0%
TGTTTGTTTGTGAATCAAAG+TGG - chr1_1:65145886-65145905 None:intergenic 30.0%
!! GTATTGATGATGATCCATAT+TGG - chr1_1:65145945-65145964 None:intergenic 30.0%
! GGTAGTTTGAAATGACAATT+AGG - chr1_1:65145983-65146002 None:intergenic 30.0%
!! TGTCATTTCAAACTACCTTT+TGG + chr1_1:65145986-65146005 Msa0036550:CDS 30.0%
! AATCCAAATGGATTTCTTGA+TGG + chr1_1:65146157-65146176 Msa0036550:CDS 30.0%
! ATCCAAATGGATTTCTTGAT+GGG + chr1_1:65146158-65146177 Msa0036550:CDS 30.0%
! TAATAATAGCCTTAACTCAG+TGG + chr1_1:65146183-65146202 Msa0036550:CDS 30.0%
! AATAATAGCCTTAACTCAGT+GGG + chr1_1:65146184-65146203 Msa0036550:CDS 30.0%
! CACAATGGCAAATTTTATGA+AGG + chr1_1:65146211-65146230 Msa0036550:CDS 30.0%
ATATCCTTTAATAGTAGGCT+TGG + chr1_1:65146277-65146296 Msa0036550:CDS 30.0%
TTATCTGAGTCAAAGAAACA+AGG + chr1_1:65146352-65146371 Msa0036550:CDS 30.0%
TATCTGAGTCAAAGAAACAA+GGG + chr1_1:65146353-65146372 Msa0036550:CDS 30.0%
AAAAAATAACTCACATGGGA+TGG - chr1_1:65146388-65146407 None:intergenic 30.0%
ATATGGACCTCTCAAAATAT+AGG - chr1_1:65146496-65146515 None:intergenic 30.0%
! GCTCATAGAATTTTTGTTAC+AGG - chr1_1:65147722-65147741 None:intergenic 30.0%
GGTCCAAATATAGATTATCA+AGG - chr1_1:65148096-65148115 None:intergenic 30.0%
CATCTTTACTACCAATAGTT+TGG - chr1_1:65148193-65148212 None:intergenic 30.0%
TGAATTGTTTGTGTTTGAAG+CGG - chr1_1:65148216-65148235 None:intergenic 30.0%
AATAATTAATCCAGGATCCA+AGG + chr1_1:65148472-65148491 Msa0036550:intron 30.0%
ATAATTAATCCAGGATCCAA+GGG + chr1_1:65148473-65148492 Msa0036550:intron 30.0%
GTTCTCTCTATAAACTATAG+GGG - chr1_1:65148583-65148602 None:intergenic 30.0%
CTTATGCCAAAAATAGTATG+TGG + chr1_1:65148674-65148693 Msa0036550:three_prime_UTR 30.0%
TTAATTGGTGGAATGGATCT+AGG - chr1_1:65144593-65144612 None:intergenic 35.0%
AGATCCATTCCACCAATTAA+AGG + chr1_1:65144593-65144612 Msa0036550:five_prime_UTR 35.0%
GATTCCTTTAATTGGTGGAA+TGG - chr1_1:65144600-65144619 None:intergenic 35.0%
TGAAGATACCACCAGTTTAA+TGG - chr1_1:65144715-65144734 None:intergenic 35.0%
TCACAAGAAGAGGAAGAATT+TGG - chr1_1:65144802-65144821 None:intergenic 35.0%
AAATTCTTCCTCTTCTTGTG+AGG + chr1_1:65144801-65144820 Msa0036550:CDS 35.0%
!! TCCTTTGTTCTGAAATTCTG+AGG - chr1_1:65145078-65145097 None:intergenic 35.0%
! GGTTTTTATTGGTATGTGGA+TGG - chr1_1:65145413-65145432 None:intergenic 35.0%
! AGAGGGTTTTTATTGGTATG+TGG - chr1_1:65145417-65145436 None:intergenic 35.0%
CATACCAATAAAAACCCTCT+TGG + chr1_1:65145417-65145436 Msa0036550:intron 35.0%
! GAATCCAAGAGGGTTTTTAT+TGG - chr1_1:65145424-65145443 None:intergenic 35.0%
!! TATAGAGGTGTTGGATCAAA+TGG + chr1_1:65145575-65145594 Msa0036550:intron 35.0%
TTGCACAACAACCAAGAAAT+TGG + chr1_1:65145602-65145621 Msa0036550:CDS 35.0%
ATTGGAGAGAATTTCTTGGA+TGG + chr1_1:65145620-65145639 Msa0036550:CDS 35.0%
TTCTTCAAATAGTCACAAGC+TGG - chr1_1:65145686-65145705 None:intergenic 35.0%
TATCCAATCTTGTAAGCACT+TGG + chr1_1:65145828-65145847 Msa0036550:CDS 35.0%
!! TTGATGATGATCCATATTGG+AGG - chr1_1:65145942-65145961 None:intergenic 35.0%
TTCTCTAATAGTGCATGATG+TGG - chr1_1:65146017-65146036 None:intergenic 35.0%
ACATCATGCACTATTAGAGA+AGG + chr1_1:65146016-65146035 Msa0036550:CDS 35.0%
CTTGAATATCATGGCAACTA+GGG - chr1_1:65146060-65146079 None:intergenic 35.0%
TCTTGAATATCATGGCAACT+AGG - chr1_1:65146061-65146080 None:intergenic 35.0%
AACCCATCAAGAAATCCATT+TGG - chr1_1:65146163-65146182 None:intergenic 35.0%
TTGGTGCATGGTGAAATATT+TGG - chr1_1:65146241-65146260 None:intergenic 35.0%
!!! TCAGAGAAATTTTTGGTGCA+TGG - chr1_1:65146253-65146272 None:intergenic 35.0%
TATCTCATATTAGGCCTTTG+TGG - chr1_1:65146325-65146344 None:intergenic 35.0%
AATAGTAAAGTCTCTACACC+AGG + chr1_1:65146540-65146559 Msa0036550:intron 35.0%
! GTTGTTGAAGTATCTTGCTT+AGG - chr1_1:65146912-65146931 None:intergenic 35.0%
!! TGGAGACACAATTTGTTGAA+GGG - chr1_1:65147128-65147147 None:intergenic 35.0%
!! ATGGAGACACAATTTGTTGA+AGG - chr1_1:65147129-65147148 None:intergenic 35.0%
CAACAAATTGTGTCTCCATT+TGG + chr1_1:65147130-65147149 Msa0036550:CDS 35.0%
AATTGTGTCTCCATTTGGAA+AGG + chr1_1:65147135-65147154 Msa0036550:CDS 35.0%
TCTGTAGTAACCTTTCCAAA+TGG - chr1_1:65147148-65147167 None:intergenic 35.0%
TGAAGCTCATGAGATATTCA+TGG - chr1_1:65147531-65147550 None:intergenic 35.0%
TAAGATTAACATACAGGCAG+GGG - chr1_1:65147897-65147916 None:intergenic 35.0%
CTAAGATTAACATACAGGCA+GGG - chr1_1:65147898-65147917 None:intergenic 35.0%
! CGGCCTTGATAATCTATATT+TGG + chr1_1:65148090-65148109 Msa0036550:intron 35.0%
!! GTCAGACTTTACTTGCTTTT+CGG - chr1_1:65148117-65148136 None:intergenic 35.0%
TTCAGTCATAATTTGGACCA+AGG + chr1_1:65148162-65148181 Msa0036550:intron 35.0%
GTGAATTTGCCTTCAAGTAA+GGG - chr1_1:65148346-65148365 None:intergenic 35.0%
TGTGAATTTGCCTTCAAGTA+AGG - chr1_1:65148347-65148366 None:intergenic 35.0%
TAATTAATCCAGGATCCAAG+GGG + chr1_1:65148474-65148493 Msa0036550:intron 35.0%
CTACTTCGATAGAAAAGACA+AGG + chr1_1:65148500-65148519 Msa0036550:CDS 35.0%
AACAAAGACCTTTACTTCGA+AGG - chr1_1:65148542-65148561 None:intergenic 35.0%
CGTATAGAGGATGTATGTAT+AGG + chr1_1:65148628-65148647 Msa0036550:CDS 35.0%
AAGATGAGTGAAGAATGTGG+TGG + chr1_1:65144664-65144683 Msa0036550:exon 40.0%
CCAGTTTAATGGAGTAGTAG+AGG - chr1_1:65144704-65144723 None:intergenic 40.0%
CCTCTACTACTCCATTAAAC+TGG + chr1_1:65144701-65144720 Msa0036550:CDS 40.0%
CTACTACTCCATTAAACTGG+TGG + chr1_1:65144704-65144723 Msa0036550:CDS 40.0%
GGAACGATGTTAAACATGCA+TGG + chr1_1:65144758-65144777 Msa0036550:CDS 40.0%
ATCTTGATCCTCACAAGAAG+AGG - chr1_1:65144812-65144831 None:intergenic 40.0%
ATTCAACAGTGAGGCTTGAA+TGG - chr1_1:65144873-65144892 None:intergenic 40.0%
TTGGTTATCCGAAGCATGTT+CGG - chr1_1:65144953-65144972 None:intergenic 40.0%
ATGCTTCGGATAACCAACTA+TGG + chr1_1:65144956-65144975 Msa0036550:CDS 40.0%
GCCTCAGAATTTCAGAACAA+AGG + chr1_1:65145074-65145093 Msa0036550:intron 40.0%
GGTATGTGGATGGATATACA+TGG - chr1_1:65145403-65145422 None:intergenic 40.0%
AGACCAAGTGCTTACAAGAT+TGG - chr1_1:65145834-65145853 None:intergenic 40.0%
CAAAGTGGCTACTAACTTCA+GGG - chr1_1:65145871-65145890 None:intergenic 40.0%
TCAAAGTGGCTACTAACTTC+AGG - chr1_1:65145872-65145891 None:intergenic 40.0%
CATGATGTGGAATCTCCAAA+AGG - chr1_1:65146004-65146023 None:intergenic 40.0%
TGCACTATTAGAGAAGGAGT+AGG + chr1_1:65146022-65146041 Msa0036550:CDS 40.0%
CCTTCCAAGCCTACTATTAA+AGG - chr1_1:65146284-65146303 None:intergenic 40.0%
CCTTTAATAGTAGGCTTGGA+AGG + chr1_1:65146281-65146300 Msa0036550:CDS 40.0%
TTGTTGGAATCCATCCACAA+AGG + chr1_1:65146308-65146327 Msa0036550:CDS 40.0%
TCATATTAGGCCTTTGTGGA+TGG - chr1_1:65146321-65146340 None:intergenic 40.0%
ATGCAGATGAGAACCACTAA+TGG + chr1_1:65146813-65146832 Msa0036550:intron 40.0%
ATGAGAACCACTAATGGAAG+AGG + chr1_1:65146819-65146838 Msa0036550:CDS 40.0%
TTGTCTCCTAGCTTGACTTT+AGG - chr1_1:65147097-65147116 None:intergenic 40.0%
ATAGGAATGAAAAGGGGAAG+AGG - chr1_1:65147188-65147207 None:intergenic 40.0%
!! TCTGTGCTGTTTGAAGCAAT+AGG + chr1_1:65147313-65147332 Msa0036550:CDS 40.0%
!! CTGTGCTGTTTGAAGCAATA+GGG + chr1_1:65147314-65147333 Msa0036550:CDS 40.0%
TTTCCATAATGATACGCACC+TGG - chr1_1:65147366-65147385 None:intergenic 40.0%
GCTAAGATTAACATACAGGC+AGG - chr1_1:65147899-65147918 None:intergenic 40.0%
AGCGGCTAAGATTAACATAC+AGG - chr1_1:65147903-65147922 None:intergenic 40.0%
! TTTCTAGGAACTGAAAGGGT+AGG - chr1_1:65148069-65148088 None:intergenic 40.0%
!! CCGTTTTCTAGGAACTGAAA+GGG - chr1_1:65148073-65148092 None:intergenic 40.0%
CCCTTTCAGTTCCTAGAAAA+CGG + chr1_1:65148070-65148089 Msa0036550:intron 40.0%
!! GATTATCAAGGCCGTTTTCT+AGG - chr1_1:65148084-65148103 None:intergenic 40.0%
CCAATAGTTTGGTAGAACCT+TGG - chr1_1:65148182-65148201 None:intergenic 40.0%
CCAAGGTTCTACCAAACTAT+TGG + chr1_1:65148179-65148198 Msa0036550:intron 40.0%
CTTGAAGGCAAATTCACACA+AGG + chr1_1:65148349-65148368 Msa0036550:CDS 40.0%
CTTCGATAGAAAAGACAAGG+AGG + chr1_1:65148503-65148522 Msa0036550:CDS 40.0%
AAGCTAGACCTTCGAAGTAA+AGG + chr1_1:65148531-65148550 Msa0036550:CDS 40.0%
AGAACAATGGACCAGATTAC+TGG + chr1_1:65148598-65148617 Msa0036550:CDS 40.0%
TACATACATCCTCTATACGC+TGG - chr1_1:65148627-65148646 None:intergenic 40.0%
AACAGTGAGGCTTGAATGGT+TGG - chr1_1:65144869-65144888 None:intergenic 45.0%
TTCGAGAGGATTCAACAGTG+AGG - chr1_1:65144882-65144901 None:intergenic 45.0%
GAGCTTCACTGTACCCATTT+AGG - chr1_1:65145778-65145797 None:intergenic 45.0%
TACTAACTTCAGGGTCAGGT+GGG - chr1_1:65145862-65145881 None:intergenic 45.0%
CATGCAAGTGAAGTGATGCA+AGG + chr1_1:65146112-65146131 Msa0036550:CDS 45.0%
TGTGATCTCCCACTGAGTTA+AGG - chr1_1:65146195-65146214 None:intergenic 45.0%
AACTCAGTGGGAGATCACAA+TGG + chr1_1:65146196-65146215 Msa0036550:CDS 45.0%
! TGTGGATGGATTCCAACAAC+TGG - chr1_1:65146307-65146326 None:intergenic 45.0%
TACACCAGGCAAATAGAGAC+CGG + chr1_1:65146554-65146573 Msa0036550:intron 45.0%
TTTACCGGTCTCTATTTGCC+TGG - chr1_1:65146561-65146580 None:intergenic 45.0%
AACCACTAATGGAAGAGGAG+AGG + chr1_1:65146824-65146843 Msa0036550:CDS 45.0%
ACCACTAATGGAAGAGGAGA+GGG + chr1_1:65146825-65146844 Msa0036550:CDS 45.0%
CAAGCACCTAAAGTCAAGCT+AGG + chr1_1:65147088-65147107 Msa0036550:CDS 45.0%
! ATGAAAAGGGGAAGAGGTGT+GGG - chr1_1:65147182-65147201 None:intergenic 45.0%
AATGAAAAGGGGAAGAGGTG+TGG - chr1_1:65147183-65147202 None:intergenic 45.0%
GTATCTTGAAGAGCAAGTCC+AGG + chr1_1:65147345-65147364 Msa0036550:CDS 45.0%
AGTCCAGGTGCGTATCATTA+TGG + chr1_1:65147360-65147379 Msa0036550:intron 45.0%
!! GCCGTTTTCTAGGAACTGAA+AGG - chr1_1:65148074-65148093 None:intergenic 45.0%
ACTGAGCAACCCTTACTTGA+AGG + chr1_1:65148334-65148353 Msa0036550:CDS 45.0%
! ACTATAGGGGTACATGACGT+AGG - chr1_1:65148570-65148589 None:intergenic 45.0%
!! ATTAATACAAAAAAATAAAA+AGG - chr1_1:65147031-65147050 None:intergenic 5.0%
ATGAAGTCGTTGGAGGAAGG+TGG - chr1_1:65144928-65144947 None:intergenic 50.0%
ACCTTCCTCCAACGACTTCA+TGG + chr1_1:65144927-65144946 Msa0036550:CDS 50.0%
ATGTTCGGCCATGAAGTCGT+TGG - chr1_1:65144938-65144957 None:intergenic 50.0%
CTTCATGGCCGAACATGCTT+CGG + chr1_1:65144942-65144961 Msa0036550:CDS 50.0%
ACTAACTTCAGGGTCAGGTG+GGG - chr1_1:65145861-65145880 None:intergenic 50.0%
CTACTAACTTCAGGGTCAGG+TGG - chr1_1:65145863-65145882 None:intergenic 50.0%
TGGCTACTAACTTCAGGGTC+AGG - chr1_1:65145866-65145885 None:intergenic 50.0%
TCCCTCTCCTCTTCCATTAG+TGG - chr1_1:65146829-65146848 None:intergenic 50.0%
! TGAAAAGGGGAAGAGGTGTG+GGG - chr1_1:65147181-65147200 None:intergenic 50.0%
CTATCGAAGTAGCTTCCCCT+TGG - chr1_1:65148492-65148511 None:intergenic 50.0%
TACGCTGGTGTCCAGTAATC+TGG - chr1_1:65148612-65148631 None:intergenic 50.0%
TACTGGACACCAGCGTATAG+AGG + chr1_1:65148615-65148634 Msa0036550:CDS 50.0%
CTCGACGAACACTCTTCGAG+AGG - chr1_1:65144896-65144915 None:intergenic 55.0%
TTGGAGGAAGGTGGTGCATG+CGG - chr1_1:65144919-65144938 None:intergenic 55.0%
GCCATGAAGTCGTTGGAGGA+AGG - chr1_1:65144931-65144950 None:intergenic 55.0%
TTCGGCCATGAAGTCGTTGG+AGG - chr1_1:65144935-65144954 None:intergenic 55.0%
AGGCTTGGAAGGCCAGTTGT+TGG + chr1_1:65146292-65146311 Msa0036550:CDS 55.0%
AGTAGCTTCCCCTTGGATCC+TGG - chr1_1:65148485-65148504 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 65144590 65148769 65144590 ID=Msa0036550;Name=Msa0036550
chr1_1 mRNA 65144590 65148769 65144590 ID=Msa0036550-mRNA-1;Parent=Msa0036550;Name=Msa0036550-mRNA-1;_AED=0.05;_eAED=0.05;_QI=77|1|1|1|1|1|7|116|537
chr1_1 exon 65144590 65144992 65144590 ID=Msa0036550-mRNA-1:exon:20954;Parent=Msa0036550-mRNA-1
chr1_1 exon 65145580 65146393 65145580 ID=Msa0036550-mRNA-1:exon:20955;Parent=Msa0036550-mRNA-1
chr1_1 exon 65146819 65146947 65146819 ID=Msa0036550-mRNA-1:exon:20956;Parent=Msa0036550-mRNA-1
chr1_1 exon 65147085 65147156 65147085 ID=Msa0036550-mRNA-1:exon:20957;Parent=Msa0036550-mRNA-1
chr1_1 exon 65147301 65147366 65147301 ID=Msa0036550-mRNA-1:exon:20958;Parent=Msa0036550-mRNA-1
chr1_1 exon 65148332 65148370 65148332 ID=Msa0036550-mRNA-1:exon:20959;Parent=Msa0036550-mRNA-1
chr1_1 exon 65148486 65148769 65148486 ID=Msa0036550-mRNA-1:exon:20960;Parent=Msa0036550-mRNA-1
chr1_1 five_prime_UTR 65144590 65144666 65144590 ID=Msa0036550-mRNA-1:five_prime_utr;Parent=Msa0036550-mRNA-1
chr1_1 CDS 65144667 65144992 65144667 ID=Msa0036550-mRNA-1:cds;Parent=Msa0036550-mRNA-1
chr1_1 CDS 65145580 65146393 65145580 ID=Msa0036550-mRNA-1:cds;Parent=Msa0036550-mRNA-1
chr1_1 CDS 65146819 65146947 65146819 ID=Msa0036550-mRNA-1:cds;Parent=Msa0036550-mRNA-1
chr1_1 CDS 65147085 65147156 65147085 ID=Msa0036550-mRNA-1:cds;Parent=Msa0036550-mRNA-1
chr1_1 CDS 65147301 65147366 65147301 ID=Msa0036550-mRNA-1:cds;Parent=Msa0036550-mRNA-1
chr1_1 CDS 65148332 65148370 65148332 ID=Msa0036550-mRNA-1:cds;Parent=Msa0036550-mRNA-1
chr1_1 CDS 65148486 65148653 65148486 ID=Msa0036550-mRNA-1:cds;Parent=Msa0036550-mRNA-1
chr1_1 three_prime_UTR 65148654 65148769 65148654 ID=Msa0036550-mRNA-1:three_prime_utr;Parent=Msa0036550-mRNA-1
Gene Sequence

>Msa0036550

ATGAGTGAAGAATGTGGTGGAAACACTATTGCTACCTCTACTACTCCATTAAACTGGTGGTATCTTCAAGCAAATTCTCTTTCTTCAAATTGGAACGATGTTAAACATGCATGGAACAACCAAATGAATAATCCAAATTCTTCCTCTTCTTGTGAGGATCAAGATATATCTGTTTCTTCTACATCTTTCACTAATGCATCCAACCATTCAAGCCTCACTGTTGAATCCTCTCGAAGAGTGTTCGTCGAGCCGCATGCACCACCTTCCTCCAACGACTTCATGGCCGAACATGCTTCGGATAACCAACTATGGAGTCATGTTTTATCAGGTGTTGGATCAAATGGAGAGTTGCACAACAACCAAGAAATTGGAGAGAATTTCTTGGATGGACTATCATCAAAAACCATGTCAAACACTATGTTTGATCAACCAGCTTGTGACTATTTGAAGAAACTTGATACAACAAGTTGGGAATATAATACTAGTGGATCAACTTCATTCAATACTAATTTTGAGAAGCACCTAAATGGGTACAGTGAAGCTCTTATTGAGAATAATGAAAGGTTGACGAAGTTATCCAATCTTGTAAGCACTTGGTCTATTGCCCCACCTGACCCTGAAGTTAGTAGCCACTTTGATTCACAAACAAACAACAATTTGTCTACTAATTTGAATAATTCTAATTCCTCCAATATGGATCATCATCAATACACACATGATTCTGACCCTAATTGTCATTTCAAACTACCTTTTGGAGATTCCACATCATGCACTATTAGAGAAGGAGTAGGTAATAAAATGTTCCCTAGTTGCCATGATATTCAAGACATGAATAAGGTTAAACAAGAATATCATCATCATGCAAGTGAAGTGATGCAAGGAAATGTGTTTAGAAAATCACTTAATCCAAATGGATTTCTTGATGGGTTTAATAATAGCCTTAACTCAGTGGGAGATCACAATGGCAAATTTTATGAAGGGTTGCCAAATATTTCACCATGCACCAAAAATTTCTCTGATGTTATATCCTTTAATAGTAGGCTTGGAAGGCCAGTTGTTGGAATCCATCCACAAAGGCCTAATATGAGATACTCAAACTTATCTGAGTCAAAGAAACAAGGGCTTCAGACACCATCCCATATGAGAACCACTAATGGAAGAGGAGAGGGAACAACACGTGAAGTAAAGAAGAAAAGATCTGAAGAATCATCAGAAGCAAGTTTGAAGAAACCTAAGCAAGATACTTCAACAACAAATTCATCTTCAAAGGTGCAAGCACCTAAAGTCAAGCTAGGAGACAAGATCACAGCCCTTCAACAAATTGTGTCTCCATTTGGAAAGACTGATACAGCATCTGTGCTGTTTGAAGCAATAGGGTACATAAAGTATCTTGAAGAGCAAGTCCAGTTACTGAGCAACCCTTACTTGAAGGCAAATTCACACAAGGATCCAAGGGGAAGCTACTTCGATAGAAAAGACAAGGAGGATGCAAAGCTAGACCTTCGAAGTAAAGGTCTTTGTTTAGTTCCTACGTCATGTACCCCTATAGTTTATAGAGAGAACAATGGACCAGATTACTGGACACCAGCGTATAGAGGATGTATGTATAGGTGA

Protein sequence

>Msa0036550

MSEECGGNTIATSTTPLNWWYLQANSLSSNWNDVKHAWNNQMNNPNSSSSCEDQDISVSSTSFTNASNHSSLTVESSRRVFVEPHAPPSSNDFMAEHASDNQLWSHVLSGVGSNGELHNNQEIGENFLDGLSSKTMSNTMFDQPACDYLKKLDTTSWEYNTSGSTSFNTNFEKHLNGYSEALIENNERLTKLSNLVSTWSIAPPDPEVSSHFDSQTNNNLSTNLNNSNSSNMDHHQYTHDSDPNCHFKLPFGDSTSCTIREGVGNKMFPSCHDIQDMNKVKQEYHHHASEVMQGNVFRKSLNPNGFLDGFNNSLNSVGDHNGKFYEGLPNISPCTKNFSDVISFNSRLGRPVVGIHPQRPNMRYSNLSESKKQGLQTPSHMRTTNGRGEGTTREVKKKRSEESSEASLKKPKQDTSTTNSSSKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKYLEEQVQLLSNPYLKANSHKDPRGSYFDRKDKEDAKLDLRSKGLCLVPTSCTPIVYRENNGPDYWTPAYRGCMYR*