AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1215540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1215540 MtrunA17_Chr4g0064601 98.288 292 5 0 1 292 1 292 0.0 589
Msa1215540 MtrunA17_Chr4g0034391 35.185 270 140 9 42 289 70 326 1.99e-32 125
Msa1215540 MtrunA17_Chr4g0009941 27.715 267 147 11 56 292 4 254 2.98e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1215540 AT2G34460.1 72.963 270 65 3 22 289 14 277 2.76e-141 399
Msa1215540 AT3G18890.1 33.453 278 149 11 41 292 62 329 4.64e-30 119
Msa1215540 AT2G37660.1 30.952 168 99 7 135 292 164 324 1.20e-12 67.8
Msa1215540 AT4G31530.1 31.746 315 158 17 8 286 25 318 8.29e-11 62.4

Find 96 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGCAGGTTGACAATTT+TGG 0.186826 8_1:-76818989 Msa1215540:intron
TGATATCACGATCCATATTT+AGG 0.198059 8_1:+76818150 None:intergenic
TGACGTGTTAAACCTAAATA+TGG 0.250892 8_1:-76818162 Msa1215540:three_prime_UTR
AGCGGCTCCATTGACTAAAA+TGG 0.269340 8_1:+76818904 None:intergenic
TCACAGTGGAAGAGCTTAAA+TGG 0.290715 8_1:-76820675 Msa1215540:exon
CACCTTAGTGGCAAAATTAC+AGG 0.310873 8_1:-76818831 Msa1215540:CDS
TGCAACTTGATCTCTGGATA+TGG 0.317263 8_1:+76818582 None:intergenic
CCACAGGCTTTCGGCCAGGC+TGG 0.324155 8_1:-76819788 Msa1215540:CDS
GTTGAGGAAGGGAAGAGATT+TGG 0.346298 8_1:+76820568 None:intergenic
CGCGCATACCATGATCTCTT+TGG 0.346559 8_1:-76818478 Msa1215540:CDS
CAGAGTTGTAGCGCCTTGTT+TGG 0.347380 8_1:-76820718 Msa1215540:five_prime_UTR
TATTCTATCTTCCCCGTTGA+AGG 0.359386 8_1:-76818258 Msa1215540:three_prime_UTR
TAGTTTGTGCCACAGGCTTT+CGG 0.360254 8_1:-76819797 Msa1215540:CDS
CAGATATTATCGCTGAACTA+TGG 0.361240 8_1:+76818453 None:intergenic
GAAAATCATATCAGGAAATC+TGG 0.374335 8_1:-76818806 Msa1215540:CDS
GATAAGCTAGCTGAAGCAAT+TGG 0.379075 8_1:-76819837 Msa1215540:CDS
ATTCTATACTAACCTTCAAC+GGG 0.387065 8_1:+76818246 None:intergenic
TGGATATGGAACCTTCATAA+AGG 0.390225 8_1:+76818596 None:intergenic
TACAGGCAGAAAATCATATC+AGG 0.402158 8_1:-76818814 Msa1215540:CDS
TCCTACTGGAAATGTTGTTA+TGG 0.413074 8_1:-76818738 Msa1215540:CDS
ATAGAATTTCAATACAAAAC+TGG 0.415520 8_1:-76818230 Msa1215540:three_prime_UTR
CACAGGCTTTCGGCCAGGCT+GGG 0.417213 8_1:-76819787 Msa1215540:CDS
GATATTTACTCACATTACTT+TGG 0.417773 8_1:+76818308 None:intergenic
AGGAAGAGGGAGCGGTGAAT+TGG 0.419663 8_1:+76820597 None:intergenic
ATAAGCTAGCTGAAGCAATT+GGG 0.423531 8_1:-76819836 Msa1215540:CDS
AGATTTGGTTCTGAAGGAAG+AGG 0.436139 8_1:+76820583 None:intergenic
GTAGGGTTTCTTGCAATAAG+AGG 0.436214 8_1:+76820647 None:intergenic
TGTGCCACAGGCTTTCGGCC+AGG 0.448901 8_1:-76819792 Msa1215540:CDS
AGCAAGAGATGATGGCATAA+TGG 0.456815 8_1:+76818201 None:intergenic
TTAGTCAATGGAGCCGCTAT+GGG 0.459534 8_1:-76818899 Msa1215540:CDS
GATAACATGAAAGGCATGCT+TGG 0.462729 8_1:+76818286 None:intergenic
TTTAGTCAATGGAGCCGCTA+TGG 0.462769 8_1:-76818900 Msa1215540:CDS
AATTCTATACTAACCTTCAA+CGG 0.463462 8_1:+76818245 None:intergenic
AAACTTACAAATTGAAGAGA+TGG 0.465083 8_1:+76820278 None:intergenic
TACTTCTGCAACTTGATCTC+TGG 0.466748 8_1:+76818576 None:intergenic
TTGGTTGCAGATTAGCAAAT+CGG 0.469195 8_1:-76818420 Msa1215540:three_prime_UTR
GCTGGAGCTACTGGTAGTAC+TGG 0.469225 8_1:-76820395 Msa1215540:CDS
GATGGGAAAGTGTGGAATGT+AGG 0.469287 8_1:+76820629 None:intergenic
CAGCGATAATATCTGAGATT+CGG 0.474779 8_1:-76818445 Msa1215540:exon
GGGAAGAGATTTGGTTCTGA+AGG 0.477299 8_1:+76820577 None:intergenic
GGATTTGCTTGCCCCATGGA+AGG 0.484251 8_1:-76819766 Msa1215540:intron
AGATCATGGTATGCGCGCTT+AGG 0.484675 8_1:+76818484 None:intergenic
ATGGGAAAGTGTGGAATGTA+GGG 0.487437 8_1:+76820630 None:intergenic
GGATATGGAACCTTCATAAA+GGG 0.488764 8_1:+76818597 None:intergenic
TAAAGCTGGGGTTAGAGACT+TGG 0.490510 8_1:-76820330 Msa1215540:CDS
CTATGGAACCAAAGAGATCA+TGG 0.496271 8_1:+76818470 None:intergenic
GAAGCAGTAGTTTGTGCCAC+AGG 0.496380 8_1:-76819804 Msa1215540:CDS
TACAAATTGAAGAGATGGGT+TGG 0.504301 8_1:+76820283 None:intergenic
GCTGGGATTTGCTTGCCCCA+TGG 0.510222 8_1:-76819770 Msa1215540:CDS
GTGGAACAGTTACTTGCAAA+GGG 0.511281 8_1:-76820362 Msa1215540:CDS
TGTCAGGACACCCTTTATGA+AGG 0.512820 8_1:-76818607 Msa1215540:intron
TAGAAGAAAGCAAGAGATGA+TGG 0.513897 8_1:+76818193 None:intergenic
AAAATTAACAAACCTTCCAT+GGG 0.515977 8_1:+76819754 None:intergenic
CGTGGAACAGTTACTTGCAA+AGG 0.522560 8_1:-76820363 Msa1215540:CDS
CTTTCCTGCATGCTTCAACA+AGG 0.527070 8_1:+76818957 None:intergenic
ACAACTTTGTAAGATGCCTC+AGG 0.530129 8_1:+76818532 None:intergenic
TAAACCTTGTTGAAGCATGC+AGG 0.536699 8_1:-76818961 Msa1215540:CDS
GTGAATTGGCGAGTGTGGGA+TGG 0.545645 8_1:+76820611 None:intergenic
GAGCGGTGAATTGGCGAGTG+TGG 0.546264 8_1:+76820606 None:intergenic
TGAATTGGCGAGTGTGGGAT+GGG 0.547232 8_1:+76820612 None:intergenic
TAATATCTGAGATTCGGACT+TGG 0.548694 8_1:-76818439 Msa1215540:three_prime_UTR
AACTTACAAATTGAAGAGAT+GGG 0.550774 8_1:+76820279 None:intergenic
GGGGCAAGCAAATCCCAGCC+TGG 0.552735 8_1:+76819774 None:intergenic
TACCTTTGCGAAGTTGAGGA+AGG 0.555784 8_1:+76820556 None:intergenic
AGCGGTGAATTGGCGAGTGT+GGG 0.558367 8_1:+76820607 None:intergenic
GTGTTACCTTTGCGAAGTTG+AGG 0.563021 8_1:+76820552 None:intergenic
CTGGAGCTACTGGTAGTACT+GGG 0.565656 8_1:-76820394 Msa1215540:CDS
TGAGGCATCTTACAAAGTTG+TGG 0.567286 8_1:-76818530 Msa1215540:CDS
TATGGGGCAGCTACTCAATC+CGG 0.569169 8_1:-76818882 Msa1215540:CDS
AGAAGTAGCTGTGGAATCGT+TGG 0.570182 8_1:-76818560 Msa1215540:CDS
AATAGAAATGATAACATGAA+AGG 0.571321 8_1:+76818277 None:intergenic
GGTTCTGAAGGAAGAGGGAG+CGG 0.573272 8_1:+76820589 None:intergenic
GATTTGGTTCTGAAGGAAGA+GGG 0.577302 8_1:+76820584 None:intergenic
ACCTTTGCGAAGTTGAGGAA+GGG 0.578834 8_1:+76820557 None:intergenic
CCAGCCTGGCCGAAAGCCTG+TGG 0.586862 8_1:+76819788 None:intergenic
ATAACAACATTTCCAGTAGG+AGG 0.590217 8_1:+76818740 None:intergenic
ACGTTGAGAAAGATGTAAGC+CGG 0.592173 8_1:+76818863 None:intergenic
TCCCTTCCTCAACTTCGCAA+AGG 0.592473 8_1:-76820558 Msa1215540:intron
TAAGCTAGCTGAAGCAATTG+GGG 0.593302 8_1:-76819835 Msa1215540:CDS
TGAAATCACTCAGCAAGCAG+TGG 0.616011 8_1:-76820453 Msa1215540:CDS
CACGTTGGCAAGTGAATACG+TGG 0.616116 8_1:-76820741 None:intergenic
GAGTGTGGGATGGGAAAGTG+TGG 0.617968 8_1:+76820621 None:intergenic
GTTAAAGTTGATGTCACAGA+GGG 0.630073 8_1:-76819864 Msa1215540:CDS
TCAAGTTGCAGAAGTAGCTG+TGG 0.632803 8_1:-76818569 Msa1215540:CDS
ATTGAGTAGCTGCCCCATAG+CGG 0.638328 8_1:+76818886 None:intergenic
AATTACACAATCATAAGACC+TGG 0.643894 8_1:-76818779 Msa1215540:CDS
TAGTCAATGGAGCCGCTATG+GGG 0.647798 8_1:-76818898 Msa1215540:CDS
TACACAATCATAAGACCTGG+AGG 0.652611 8_1:-76818776 Msa1215540:CDS
TCCATAACAACATTTCCAGT+AGG 0.656385 8_1:+76818737 None:intergenic
GGAATCGTTGGCTTATCCTG+AGG 0.676950 8_1:-76818548 Msa1215540:CDS
TAGTACTGGGAAAAGAATCG+TGG 0.683015 8_1:-76820381 Msa1215540:CDS
ACACAATCATAAGACCTGGA+GGG 0.693729 8_1:-76818775 Msa1215540:CDS
AAATGTTGTTATGGAGCCAG+AGG 0.716025 8_1:-76818729 Msa1215540:intron
TTCTATACTAACCTTCAACG+GGG 0.739473 8_1:+76818247 None:intergenic
AAATTAACAAACCTTCCATG+GGG 0.740909 8_1:+76819755 None:intergenic
GGTTAAAGTTGATGTCACAG+AGG 0.749642 8_1:-76819865 Msa1215540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTATTTTTATGTTAGTA+TGG - chr8_1:76819207-76819226 Msa1215540:intron 10.0%
!!! TTTTTTTTCTTTTTGTTAGA+TGG - chr8_1:76818401-76818420 Msa1215540:three_prime_UTR 15.0%
!! TATAACAAAATATTGTATAC+TGG + chr8_1:76819863-76819882 None:intergenic 15.0%
!!! ACAATATTTTGTTATAACAA+AGG - chr8_1:76819867-76819886 Msa1215540:CDS 15.0%
!!! CAATATTTTGTTATAACAAA+GGG - chr8_1:76819868-76819887 Msa1215540:intron 15.0%
!!! ATAGTCCAATTTAAGATTAT+TGG - chr8_1:76818656-76818675 Msa1215540:intron 20.0%
!!! TAGTCCAATTTAAGATTATT+GGG - chr8_1:76818657-76818676 Msa1215540:intron 20.0%
!! TTTAAATCTAAACCAAGTTA+AGG + chr8_1:76819271-76819290 None:intergenic 20.0%
!!! TATAATCTGATGCTATTTAA+AGG + chr8_1:76819754-76819773 None:intergenic 20.0%
!!! CTCAATTTTTTATATGTTTG+TGG - chr8_1:76820224-76820243 Msa1215540:intron 20.0%
!!! AATTTAATTTTCTATGTGTC+AGG - chr8_1:76820261-76820280 Msa1215540:intron 20.0%
!! AATAGAAATGATAACATGAA+AGG + chr8_1:76820610-76820629 None:intergenic 20.0%
!! ATAGAATTTCAATACAAAAC+TGG - chr8_1:76820654-76820673 Msa1215540:CDS 20.0%
! AAAAAATGCTAGTATTAACG+CGG + chr8_1:76818386-76818405 None:intergenic 25.0%
!! TTTTCTTTTTGTTAGATGGA+AGG - chr8_1:76818405-76818424 Msa1215540:three_prime_UTR 25.0%
! AACTTACAAATTGAAGAGAT+GGG + chr8_1:76818608-76818627 None:intergenic 25.0%
! AAACTTACAAATTGAAGAGA+TGG + chr8_1:76818609-76818628 None:intergenic 25.0%
!! GGACTATTTTGCAATATAAT+GGG + chr8_1:76818643-76818662 None:intergenic 25.0%
!! TGGACTATTTTGCAATATAA+TGG + chr8_1:76818644-76818663 None:intergenic 25.0%
! TCAAATAAACCAATTCAAAC+AGG - chr8_1:76818932-76818951 Msa1215540:CDS 25.0%
! CAAATAAACCAATTCAAACA+GGG - chr8_1:76818933-76818952 Msa1215540:CDS 25.0%
! AAAATTAACAAACCTTCCAT+GGG + chr8_1:76819133-76819152 None:intergenic 25.0%
! AAAAATTAACAAACCTTCCA+TGG + chr8_1:76819134-76819153 None:intergenic 25.0%
! ATGGTAGTAGAATATTAGAA+TGG - chr8_1:76819164-76819183 Msa1215540:intron 25.0%
!!! AAAATGATCTCTAGAACTTA+CGG - chr8_1:76819296-76819315 Msa1215540:intron 25.0%
! ACTGTAACACTAATATAATC+AGG - chr8_1:76819480-76819499 Msa1215540:intron 25.0%
! TTTAGATTCTTCACTAGTAA+AGG - chr8_1:76819684-76819703 Msa1215540:intron 25.0%
! TTAGATTCTTCACTAGTAAA+GGG - chr8_1:76819685-76819704 Msa1215540:intron 25.0%
!!! ACAATTGTGTTTTGATTCAT+TGG + chr8_1:76819808-76819827 None:intergenic 25.0%
! ATGAATCAAAACACAATTGT+TGG - chr8_1:76819808-76819827 Msa1215540:CDS 25.0%
!!! ATAAGTTCCATTTTAGTCAA+TGG - chr8_1:76819973-76819992 Msa1215540:intron 25.0%
! GATATTTACTCACATTACTT+TGG + chr8_1:76820579-76820598 None:intergenic 25.0%
! AATTCTATACTAACCTTCAA+CGG + chr8_1:76820642-76820661 None:intergenic 25.0%
! GTTTTCTTGTAATCCAAACA+AGG + chr8_1:76818182-76818201 None:intergenic 30.0%
! AAGAAGAAAGTTTTTGTTGC+TGG - chr8_1:76818471-76818490 Msa1215540:CDS 30.0%
CAGACCCAATAATCTTAAAT+TGG + chr8_1:76818664-76818683 None:intergenic 30.0%
TATAAACAATTTGCCCTGTT+TGG - chr8_1:76818684-76818703 Msa1215540:intron 30.0%
! TTAAGTTGTTGATCCAAACA+GGG + chr8_1:76818700-76818719 None:intergenic 30.0%
! ATTAAGTTGTTGATCCAAAC+AGG + chr8_1:76818701-76818720 None:intergenic 30.0%
GAATGACATGATGTGTAATT+TGG - chr8_1:76818972-76818991 Msa1215540:CDS 30.0%
AAATTAACAAACCTTCCATG+GGG + chr8_1:76819132-76819151 None:intergenic 30.0%
TAGAACTTACGGTGATTATT+GGG - chr8_1:76819307-76819326 Msa1215540:intron 30.0%
GTACAAGTTCTGTAAAAGTT+TGG - chr8_1:76819365-76819384 Msa1215540:intron 30.0%
!!! GTGTTTGATACTTTTGAAGT+AGG - chr8_1:76819387-76819406 Msa1215540:intron 30.0%
AGTAGGCTACATTATATACA+TGG - chr8_1:76819404-76819423 Msa1215540:intron 30.0%
ACTCTATCTAATATCCAGAA+TGG + chr8_1:76819570-76819589 None:intergenic 30.0%
ACTAGTGAAGAATCTAAACT+TGG + chr8_1:76819682-76819701 None:intergenic 30.0%
ATCAAAACACAATTGTTGGT+TGG - chr8_1:76819812-76819831 Msa1215540:CDS 30.0%
! TCAAAACACAATTGTTGGTT+GGG - chr8_1:76819813-76819832 Msa1215540:CDS 30.0%
AACAAAGGGATATATTATGC+AGG - chr8_1:76819882-76819901 Msa1215540:intron 30.0%
!! ATTATGCAGGTTGACAATTT+TGG - chr8_1:76819895-76819914 Msa1215540:intron 30.0%
! TACATCTTTCTCAACGTTTT+CGG - chr8_1:76820027-76820046 Msa1215540:intron 30.0%
GAAAATCATATCAGGAAATC+TGG - chr8_1:76820078-76820097 Msa1215540:intron 30.0%
AATTACACAATCATAAGACC+TGG - chr8_1:76820105-76820124 Msa1215540:intron 30.0%
CCAAAAATCCAAGAAAAACA+AGG + chr8_1:76820493-76820512 None:intergenic 30.0%
!!! CCTTGTTTTTCTTGGATTTT+TGG - chr8_1:76820490-76820509 Msa1215540:intron 30.0%
ATTCTATACTAACCTTCAAC+GGG + chr8_1:76820641-76820660 None:intergenic 30.0%
TGACGTGTTAAACCTAAATA+TGG - chr8_1:76820722-76820741 Msa1215540:five_prime_UTR 30.0%
TGATATCACGATCCATATTT+AGG + chr8_1:76820737-76820756 None:intergenic 30.0%
! AGAAAACTCAGTTTTCACAG+TGG - chr8_1:76818195-76818214 Msa1215540:three_prime_UTR 35.0%
TACAAATTGAAGAGATGGGT+TGG + chr8_1:76818604-76818623 None:intergenic 35.0%
AAGCTATCATGTAGAGCTTA+TGG - chr8_1:76818830-76818849 Msa1215540:CDS 35.0%
ATATGTGTGAGTTCATATGC+AGG - chr8_1:76818998-76819017 Msa1215540:intron 35.0%
!! GTTAAAGTTGATGTCACAGA+GGG - chr8_1:76819020-76819039 Msa1215540:intron 35.0%
ATAAGCTAGCTGAAGCAATT+GGG - chr8_1:76819048-76819067 Msa1215540:intron 35.0%
CTAGAACTTACGGTGATTAT+TGG - chr8_1:76819306-76819325 Msa1215540:intron 35.0%
! TGGGTGCAACATATTTTCAT+TGG - chr8_1:76819326-76819345 Msa1215540:intron 35.0%
GGTTACTAAAACAAGAACCA+CGG + chr8_1:76819543-76819562 None:intergenic 35.0%
CTGGATATTAGATAGAGTTG+AGG - chr8_1:76819572-76819591 Msa1215540:intron 35.0%
TACAGGCAGAAAATCATATC+AGG - chr8_1:76820070-76820089 Msa1215540:intron 35.0%
ATAACAACATTTCCAGTAGG+AGG + chr8_1:76820147-76820166 None:intergenic 35.0%
TCCTACTGGAAATGTTGTTA+TGG - chr8_1:76820146-76820165 Msa1215540:intron 35.0%
TCCATAACAACATTTCCAGT+AGG + chr8_1:76820150-76820169 None:intergenic 35.0%
GAAATTTAAGCAAACACCTC+TGG + chr8_1:76820174-76820193 None:intergenic 35.0%
GGATATGGAACCTTCATAAA+GGG + chr8_1:76820290-76820309 None:intergenic 35.0%
TGGATATGGAACCTTCATAA+AGG + chr8_1:76820291-76820310 None:intergenic 35.0%
CAGATATTATCGCTGAACTA+TGG + chr8_1:76820434-76820453 None:intergenic 35.0%
! CAGCGATAATATCTGAGATT+CGG - chr8_1:76820439-76820458 Msa1215540:CDS 35.0%
! TAATATCTGAGATTCGGACT+TGG - chr8_1:76820445-76820464 Msa1215540:CDS 35.0%
TTGGTTGCAGATTAGCAAAT+CGG - chr8_1:76820464-76820483 Msa1215540:CDS 35.0%
!!! ATCGGTTTCCTTGTTTTTCT+TGG - chr8_1:76820482-76820501 Msa1215540:intron 35.0%
TTCTATACTAACCTTCAACG+GGG + chr8_1:76820640-76820659 None:intergenic 35.0%
TAGAAGAAAGCAAGAGATGA+TGG + chr8_1:76820694-76820713 None:intergenic 35.0%
TCACAGTGGAAGAGCTTAAA+TGG - chr8_1:76818209-76818228 Msa1215540:three_prime_UTR 40.0%
GTAGGGTTTCTTGCAATAAG+AGG + chr8_1:76818240-76818259 None:intergenic 40.0%
! ATGGGAAAGTGTGGAATGTA+GGG + chr8_1:76818257-76818276 None:intergenic 40.0%
!! GATTTGGTTCTGAAGGAAGA+GGG + chr8_1:76818303-76818322 None:intergenic 40.0%
!! AGATTTGGTTCTGAAGGAAG+AGG + chr8_1:76818304-76818323 None:intergenic 40.0%
! TAGTACTGGGAAAAGAATCG+TGG - chr8_1:76818503-76818522 Msa1215540:CDS 40.0%
GTGGAACAGTTACTTGCAAA+GGG - chr8_1:76818522-76818541 Msa1215540:CDS 40.0%
!!! AAGGGTTTTGCTGTTAAAGC+TGG - chr8_1:76818540-76818559 Msa1215540:CDS 40.0%
!!! AGGGTTTTGCTGTTAAAGCT+GGG - chr8_1:76818541-76818560 Msa1215540:CDS 40.0%
!! CAAGTACTTCTGAGACTCTA+TGG + chr8_1:76818897-76818916 None:intergenic 40.0%
!! GGTTAAAGTTGATGTCACAG+AGG - chr8_1:76819019-76819038 Msa1215540:intron 40.0%
GATAAGCTAGCTGAAGCAAT+TGG - chr8_1:76819047-76819066 Msa1215540:intron 40.0%
TAAGCTAGCTGAAGCAATTG+GGG - chr8_1:76819049-76819068 Msa1215540:intron 40.0%
! GTTAATGAGTGGCCTTAACT+TGG - chr8_1:76819256-76819275 Msa1215540:intron 40.0%
! TTGATTCCACATTTTCCCTC+CGG - chr8_1:76819443-76819462 Msa1215540:intron 40.0%
ACAGTTTAACACGCAGAAAC+CGG + chr8_1:76819465-76819484 None:intergenic 40.0%
TTTAGTAACCAACGCCATTC+TGG - chr8_1:76819553-76819572 Msa1215540:intron 40.0%
TCTAATATCCAGAATGGCGT+TGG + chr8_1:76819564-76819583 None:intergenic 40.0%
TAAACCTTGTTGAAGCATGC+AGG - chr8_1:76819923-76819942 Msa1215540:intron 40.0%
ACGTTGAGAAAGATGTAAGC+CGG + chr8_1:76820024-76820043 None:intergenic 40.0%
CACCTTAGTGGCAAAATTAC+AGG - chr8_1:76820053-76820072 Msa1215540:intron 40.0%
! TGCCTGTAATTTTGCCACTA+AGG + chr8_1:76820058-76820077 None:intergenic 40.0%
TACACAATCATAAGACCTGG+AGG - chr8_1:76820108-76820127 Msa1215540:intron 40.0%
ACACAATCATAAGACCTGGA+GGG - chr8_1:76820109-76820128 Msa1215540:intron 40.0%
TTGAAAAACGATCCTCCTAC+TGG - chr8_1:76820132-76820151 Msa1215540:intron 40.0%
AAATGTTGTTATGGAGCCAG+AGG - chr8_1:76820155-76820174 Msa1215540:intron 40.0%
TGCAACTTGATCTCTGGATA+TGG + chr8_1:76820305-76820324 None:intergenic 40.0%
TACTTCTGCAACTTGATCTC+TGG + chr8_1:76820311-76820330 None:intergenic 40.0%
ACAACTTTGTAAGATGCCTC+AGG + chr8_1:76820355-76820374 None:intergenic 40.0%
! TGAGGCATCTTACAAAGTTG+TGG - chr8_1:76820354-76820373 Msa1215540:CDS 40.0%
CTATGGAACCAAAGAGATCA+TGG + chr8_1:76820417-76820436 None:intergenic 40.0%
! GATAACATGAAAGGCATGCT+TGG + chr8_1:76820601-76820620 None:intergenic 40.0%
TATTCTATCTTCCCCGTTGA+AGG - chr8_1:76820626-76820645 Msa1215540:CDS 40.0%
! AGCAAGAGATGATGGCATAA+TGG + chr8_1:76820686-76820705 None:intergenic 40.0%
! GATGGGAAAGTGTGGAATGT+AGG + chr8_1:76818258-76818277 None:intergenic 45.0%
!! GGGAAGAGATTTGGTTCTGA+AGG + chr8_1:76818310-76818329 None:intergenic 45.0%
GTTGAGGAAGGGAAGAGATT+TGG + chr8_1:76818319-76818338 None:intergenic 45.0%
ACCTTTGCGAAGTTGAGGAA+GGG + chr8_1:76818330-76818349 None:intergenic 45.0%
TACCTTTGCGAAGTTGAGGA+AGG + chr8_1:76818331-76818350 None:intergenic 45.0%
GTGTTACCTTTGCGAAGTTG+AGG + chr8_1:76818335-76818354 None:intergenic 45.0%
TGAAATCACTCAGCAAGCAG+TGG - chr8_1:76818431-76818450 Msa1215540:three_prime_UTR 45.0%
! GTTTTTGTTGCTGGAGCTAC+TGG - chr8_1:76818480-76818499 Msa1215540:CDS 45.0%
CGTGGAACAGTTACTTGCAA+AGG - chr8_1:76818521-76818540 Msa1215540:CDS 45.0%
!!! GGGTTTTGCTGTTAAAGCTG+GGG - chr8_1:76818542-76818561 Msa1215540:CDS 45.0%
TAAAGCTGGGGTTAGAGACT+TGG - chr8_1:76818554-76818573 Msa1215540:CDS 45.0%
ACACACAGCCCTGTTTGAAT+TGG + chr8_1:76818944-76818963 None:intergenic 45.0%
! TAGTTTGTGCCACAGGCTTT+CGG - chr8_1:76819087-76819106 Msa1215540:intron 45.0%
!! GTTTTGATATCAGCTGCCAC+TGG - chr8_1:76819234-76819253 Msa1215540:intron 45.0%
TAAGGCCACTCATTAACCAG+TGG + chr8_1:76819253-76819272 None:intergenic 45.0%
TTTAACACGCAGAAACCGGA+GGG + chr8_1:76819461-76819480 None:intergenic 45.0%
GATAGCTTTCATTCATGCCG+TGG - chr8_1:76819523-76819542 Msa1215540:intron 45.0%
! ATTGTTGGTTGGGACTTCAG+TGG - chr8_1:76819823-76819842 Msa1215540:CDS 45.0%
!! CTTCAGTGGATTATTCTCGC+TGG - chr8_1:76819837-76819856 Msa1215540:CDS 45.0%
CTTTCCTGCATGCTTCAACA+AGG + chr8_1:76819930-76819949 None:intergenic 45.0%
! AGCGGCTCCATTGACTAAAA+TGG + chr8_1:76819983-76820002 None:intergenic 45.0%
TTTAGTCAATGGAGCCGCTA+TGG - chr8_1:76819984-76820003 Msa1215540:intron 45.0%
TTAGTCAATGGAGCCGCTAT+GGG - chr8_1:76819985-76820004 Msa1215540:intron 45.0%
TGTCAGGACACCCTTTATGA+AGG - chr8_1:76820277-76820296 Msa1215540:intron 45.0%
! TCAAGTTGCAGAAGTAGCTG+TGG - chr8_1:76820315-76820334 Msa1215540:CDS 45.0%
AGAAGTAGCTGTGGAATCGT+TGG - chr8_1:76820324-76820343 Msa1215540:CDS 45.0%
!!! TTAATTTTTTGTTTATATTA+TGG - chr8_1:76819145-76819164 Msa1215540:intron 5.0%
! CAGAGTTGTAGCGCCTTGTT+TGG - chr8_1:76818166-76818185 Msa1215540:three_prime_UTR 50.0%
TGAATTGGCGAGTGTGGGAT+GGG + chr8_1:76818275-76818294 None:intergenic 50.0%
TCCCTTCCTCAACTTCGCAA+AGG - chr8_1:76818326-76818345 Msa1215540:three_prime_UTR 50.0%
CTGGAGCTACTGGTAGTACT+GGG - chr8_1:76818490-76818509 Msa1215540:CDS 50.0%
! GAAGCAGTAGTTTGTGCCAC+AGG - chr8_1:76819080-76819099 Msa1215540:intron 50.0%
! AGCTGCCACTGGTTAATGAG+TGG - chr8_1:76819245-76819264 Msa1215540:intron 50.0%
CAGAAACCGGAGGGAAAATG+TGG + chr8_1:76819452-76819471 None:intergenic 50.0%
GTTTAACACGCAGAAACCGG+AGG + chr8_1:76819462-76819481 None:intergenic 50.0%
TAGTCAATGGAGCCGCTATG+GGG - chr8_1:76819986-76820005 Msa1215540:intron 50.0%
ATTGAGTAGCTGCCCCATAG+CGG + chr8_1:76820001-76820020 None:intergenic 50.0%
TATGGGGCAGCTACTCAATC+CGG - chr8_1:76820002-76820021 Msa1215540:intron 50.0%
! CGTTTTCGGACTCACCTTAG+TGG - chr8_1:76820041-76820060 Msa1215540:intron 50.0%
!! GGATCGTTTTTCAACCCTCC+AGG + chr8_1:76820126-76820145 None:intergenic 50.0%
!! GGAATCGTTGGCTTATCCTG+AGG - chr8_1:76820336-76820355 Msa1215540:CDS 50.0%
AGATCATGGTATGCGCGCTT+AGG + chr8_1:76820403-76820422 None:intergenic 50.0%
CGCGCATACCATGATCTCTT+TGG - chr8_1:76820406-76820425 Msa1215540:CDS 50.0%
GAGTGTGGGATGGGAAAGTG+TGG + chr8_1:76818266-76818285 None:intergenic 55.0%
GTGAATTGGCGAGTGTGGGA+TGG + chr8_1:76818276-76818295 None:intergenic 55.0%
AGCGGTGAATTGGCGAGTGT+GGG + chr8_1:76818280-76818299 None:intergenic 55.0%
AGGAAGAGGGAGCGGTGAAT+TGG + chr8_1:76818290-76818309 None:intergenic 55.0%
!! GGTTCTGAAGGAAGAGGGAG+CGG + chr8_1:76818298-76818317 None:intergenic 55.0%
GCTGGAGCTACTGGTAGTAC+TGG - chr8_1:76818489-76818508 Msa1215540:CDS 55.0%
! GGATTTGCTTGCCCCATGGA+AGG - chr8_1:76819118-76819137 Msa1215540:intron 55.0%
!! TATGCGCGCTTAGGAGCATC+AGG + chr8_1:76820394-76820413 None:intergenic 55.0%
GAGCGGTGAATTGGCGAGTG+TGG + chr8_1:76818281-76818300 None:intergenic 60.0%
! GCTGGGATTTGCTTGCCCCA+TGG - chr8_1:76819114-76819133 Msa1215540:intron 60.0%
TGTGCCACAGGCTTTCGGCC+AGG - chr8_1:76819092-76819111 Msa1215540:intron 65.0%
CACAGGCTTTCGGCCAGGCT+GGG - chr8_1:76819097-76819116 Msa1215540:intron 65.0%
GGGGCAAGCAAATCCCAGCC+TGG + chr8_1:76819113-76819132 None:intergenic 65.0%
CCAGCCTGGCCGAAAGCCTG+TGG + chr8_1:76819099-76819118 None:intergenic 70.0%
CCACAGGCTTTCGGCCAGGC+TGG - chr8_1:76819096-76819115 Msa1215540:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 76818148 76820758 76818148 ID=Msa1215540;Name=Msa1215540
chr8_1 mRNA 76818148 76820758 76818148 ID=Msa1215540-mRNA-1;Parent=Msa1215540;Name=Msa1215540-mRNA-1;_AED=0.03;_eAED=0.03;_QI=80|1|1|1|1|1|5|311|292
chr8_1 exon 76818148 76818623 76818148 ID=Msa1215540-mRNA-1:exon:26459;Parent=Msa1215540-mRNA-1
chr8_1 exon 76818730 76819002 76818730 ID=Msa1215540-mRNA-1:exon:26458;Parent=Msa1215540-mRNA-1
chr8_1 exon 76819767 76819886 76819767 ID=Msa1215540-mRNA-1:exon:26457;Parent=Msa1215540-mRNA-1
chr8_1 exon 76820286 76820486 76820286 ID=Msa1215540-mRNA-1:exon:26456;Parent=Msa1215540-mRNA-1
chr8_1 exon 76820559 76820758 76820559 ID=Msa1215540-mRNA-1:exon:26455;Parent=Msa1215540-mRNA-1
chr8_1 five_prime_UTR 76820679 76820758 76820679 ID=Msa1215540-mRNA-1:five_prime_utr;Parent=Msa1215540-mRNA-1
chr8_1 CDS 76820559 76820678 76820559 ID=Msa1215540-mRNA-1:cds;Parent=Msa1215540-mRNA-1
chr8_1 CDS 76820286 76820486 76820286 ID=Msa1215540-mRNA-1:cds;Parent=Msa1215540-mRNA-1
chr8_1 CDS 76819767 76819886 76819767 ID=Msa1215540-mRNA-1:cds;Parent=Msa1215540-mRNA-1
chr8_1 CDS 76818730 76819002 76818730 ID=Msa1215540-mRNA-1:cds;Parent=Msa1215540-mRNA-1
chr8_1 CDS 76818459 76818623 76818459 ID=Msa1215540-mRNA-1:cds;Parent=Msa1215540-mRNA-1
chr8_1 three_prime_UTR 76818148 76818458 76818148 ID=Msa1215540-mRNA-1:three_prime_utr;Parent=Msa1215540-mRNA-1
Gene Sequence

>Msa1215540

ATGGCTTTTCCTCTTATTGCAAGAAACCCTACATTCCACACTTTCCCATCCCACACTCGCCAATTCACCGCTCCCTCTTCCTTCAGAACCAAATCTCTTCCCTTCCTCAACTTCGCAAAGATGGAAGGAAGTGAAATCACTCAGCAAGCAGTGGATGATGATTTGAGTTTGAAGAAGAAAGTTTTTGTTGCTGGAGCTACTGGTAGTACTGGGAAAAGAATCGTGGAACAGTTACTTGCAAAGGGTTTTGCTGTTAAAGCTGGGGTTAGAGACTTGGACAAAGCAAAAACTTCACTTTCTGCCAACCCATCTCTTCAATTTGTTAAAGTTGATGTCACAGAGGGTTCTGATAAGCTAGCTGAAGCAATTGGGGATGATACAGAAGCAGTAGTTTGTGCCACAGGCTTTCGGCCAGGCTGGGATTTGCTTGCCCCATGGAAGGTTGACAATTTTGGCACTGTAAACCTTGTTGAAGCATGCAGGAAAGTCAACGTTAACAGATTCATTCTTATAAGTTCCATTTTAGTCAATGGAGCCGCTATGGGGCAGCTACTCAATCCGGCTTACATCTTTCTCAACGTTTTCGGACTCACCTTAGTGGCAAAATTACAGGCAGAAAATCATATCAGGAAATCTGGTATAAATTACACAATCATAAGACCTGGAGGGTTGAAAAACGATCCTCCTACTGGAAATGTTGTTATGGAGCCAGAGGACACCCTTTATGAAGGTTCCATATCCAGAGATCAAGTTGCAGAAGTAGCTGTGGAATCGTTGGCTTATCCTGAGGCATCTTACAAAGTTGTGGAGATAGTCGCTCGACCTGATGCTCCTAAGCGCGCATACCATGATCTCTTTGGTTCCATAGTTCAGCGATAA

Protein sequence

>Msa1215540

MAFPLIARNPTFHTFPSHTRQFTAPSSFRTKSLPFLNFAKMEGSEITQQAVDDDLSLKKKVFVAGATGSTGKRIVEQLLAKGFAVKAGVRDLDKAKTSLSANPSLQFVKVDVTEGSDKLAEAIGDDTEAVVCATGFRPGWDLLAPWKVDNFGTVNLVEACRKVNVNRFILISSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAENHIRKSGINYTIIRPGGLKNDPPTGNVVMEPEDTLYEGSISRDQVAEVAVESLAYPEASYKVVEIVARPDAPKRAYHDLFGSIVQR*