Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394660 | XP_013465233.1 | 84.615 | 143 | 20 | 1 | 76 | 216 | 79 | 221 | 3.34e-79 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394660 | sp|Q9LS08|BH032_ARATH | 37.097 | 124 | 69 | 2 | 83 | 202 | 161 | 279 | 5.04e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394660 | A0A072VCU0 | 84.615 | 143 | 20 | 1 | 76 | 216 | 79 | 221 | 1.60e-79 | 247 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0075880 | Msa0394660 | 0.804668 | 1.934333e-49 | -8.615850e-47 |
| Msa0194440 | Msa0394660 | 0.803898 | 2.797725e-49 | -8.615850e-47 |
| Msa0380850 | Msa0394660 | 0.808643 | 2.800851e-50 | -8.615850e-47 |
| Msa0394660 | Msa0538600 | 0.806049 | 9.934730e-50 | -8.615850e-47 |
| Msa0394660 | Msa0824390 | 0.804831 | 1.788581e-49 | -8.615850e-47 |
| Msa0394660 | Msa0860670 | 0.804290 | 2.319234e-49 | -8.615850e-47 |
| Msa0394660 | Msa0893130 | 0.833553 | 4.991033e-56 | -8.615850e-47 |
| Msa0394660 | Msa0925250 | 0.811757 | 5.968698e-51 | -8.615850e-47 |
| Msa0394660 | Msa0925290 | 0.825932 | 3.578677e-54 | -8.615850e-47 |
| Msa0394660 | Msa1054810 | 0.807660 | 4.535493e-50 | -8.615850e-47 |
| Msa0394660 | Msa1117530 | 0.806754 | 7.055953e-50 | -8.615850e-47 |
| Msa0394660 | Msa1362390 | 0.825092 | 5.660350e-54 | -8.615850e-47 |
| Msa0394660 | Msa1367850 | 0.808498 | 3.006766e-50 | -8.615850e-47 |
| Msa0394660 | Msa1420290 | 0.808264 | 3.373936e-50 | -8.615850e-47 |
| Msa0344920 | Msa0394660 | 0.813320 | 2.717013e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394660 | MtrunA17_Chr2g0325521 | 84.615 | 143 | 20 | 1 | 76 | 216 | 79 | 221 | 3.07e-83 | 247 |
| Msa0394660 | MtrunA17_Chr4g0041051 | 67.133 | 143 | 45 | 1 | 76 | 216 | 88 | 230 | 6.78e-64 | 198 |
| Msa0394660 | MtrunA17_Chr4g0049701 | 92.500 | 80 | 6 | 0 | 6 | 85 | 67 | 146 | 2.97e-50 | 166 |
| Msa0394660 | MtrunA17_Chr4g0049671 | 69.524 | 105 | 28 | 3 | 6 | 106 | 61 | 165 | 7.00e-40 | 144 |
| Msa0394660 | MtrunA17_Chr4g0049651 | 55.039 | 129 | 49 | 2 | 6 | 134 | 70 | 189 | 3.95e-37 | 135 |
| Msa0394660 | MtrunA17_Chr4g0045901 | 42.361 | 144 | 79 | 2 | 77 | 217 | 96 | 238 | 2.08e-30 | 113 |
| Msa0394660 | MtrunA17_Chr7g0255961 | 39.552 | 134 | 74 | 3 | 84 | 216 | 105 | 232 | 7.48e-20 | 84.7 |
| Msa0394660 | MtrunA17_Chr1g0198801 | 35.556 | 135 | 76 | 3 | 84 | 214 | 188 | 315 | 2.37e-18 | 82.0 |
| Msa0394660 | MtrunA17_Chr3g0113721 | 31.724 | 145 | 80 | 5 | 78 | 210 | 61 | 198 | 2.51e-16 | 74.7 |
| Msa0394660 | MtrunA17_Chr2g0283714 | 40.217 | 92 | 52 | 1 | 74 | 165 | 4 | 92 | 3.48e-16 | 72.4 |
| Msa0394660 | MtrunA17_Chr4g0060581 | 37.662 | 77 | 46 | 1 | 8 | 82 | 77 | 153 | 3.60e-12 | 62.4 |
| Msa0394660 | MtrunA17_Chr5g0412371 | 31.387 | 137 | 77 | 5 | 56 | 181 | 44 | 174 | 5.19e-12 | 62.8 |
| Msa0394660 | MtrunA17_Chr5g0427361 | 30.597 | 134 | 65 | 3 | 77 | 183 | 58 | 190 | 8.57e-12 | 62.8 |
| Msa0394660 | MtrunA17_Chr5g0416561 | 37.363 | 91 | 46 | 4 | 8 | 88 | 131 | 220 | 2.21e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394660 | AT3G25710.1 | 37.097 | 124 | 69 | 2 | 83 | 202 | 161 | 279 | 5.12e-18 | 81.6 |
| Msa0394660 | AT1G68810.1 | 35.338 | 133 | 81 | 3 | 84 | 214 | 204 | 333 | 1.18e-17 | 80.9 |
| Msa0394660 | AT3G56770.1 | 35.043 | 117 | 71 | 3 | 78 | 190 | 67 | 182 | 6.66e-14 | 68.6 |
| Msa0394660 | AT2G40200.1 | 31.724 | 145 | 87 | 4 | 78 | 215 | 85 | 224 | 3.87e-13 | 67.0 |
| Msa0394660 | AT2G41130.1 | 32.593 | 135 | 83 | 3 | 84 | 216 | 97 | 225 | 3.91e-13 | 67.0 |
Find 31 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCTCATCATACCGGATTT+TGG | 0.172853 | 3_2:-9707387 | Msa0394660:CDS |
| CTTATCTCATGATTGTCTTT+TGG | 0.225833 | 3_2:+9706622 | None:intergenic |
| TCACAAGAAGGTGGATTAAA+TGG | 0.236239 | 3_2:-9706592 | Msa0394660:CDS |
| AGTGATGCTCTAATTGAATA+AGG | 0.252736 | 3_2:+9706565 | None:intergenic |
| TGTGACTATTTGTGGTTTCA+TGG | 0.344896 | 3_2:+9707329 | None:intergenic |
| TTAAGCTAATGATCATCTTA+TGG | 0.364943 | 3_2:-9707407 | Msa0394660:CDS |
| AACCTCCATGTGACTATTTG+TGG | 0.367739 | 3_2:+9707321 | None:intergenic |
| TGTAATAACTTCAGCTAGTA+AGG | 0.369694 | 3_2:+9706699 | None:intergenic |
| GTGGTTTCATGGAGCGAATA+AGG | 0.404640 | 3_2:+9707340 | None:intergenic |
| AAGGGCAGAGAATGCAACTT+TGG | 0.427512 | 3_2:-9706470 | Msa0394660:CDS |
| GCTAGCAATGAGTTTCTGTA+AGG | 0.438556 | 3_2:+9707212 | None:intergenic |
| AGGGCAGAGAATGCAACTTT+GGG | 0.451743 | 3_2:-9706469 | Msa0394660:CDS |
| GTGATGCTCTAATTGAATAA+GGG | 0.459428 | 3_2:+9706566 | None:intergenic |
| TCATTACCATGTCTGACATC+AGG | 0.466569 | 3_2:-9707449 | None:intergenic |
| TAAGAAGTTCGTCCAAAATC+CGG | 0.469589 | 3_2:+9707375 | None:intergenic |
| GAGAGATATATGAAAGAGAA+TGG | 0.473137 | 3_2:-9707243 | Msa0394660:CDS |
| CATGGAGGTTAAATAGCTAC+TGG | 0.492701 | 3_2:-9707308 | Msa0394660:CDS |
| CATCTTATGGCTCATCATAC+CGG | 0.498653 | 3_2:-9707394 | Msa0394660:CDS |
| CTGACATCAGGTTTCAGCTC+TGG | 0.505719 | 3_2:-9707437 | Msa0394660:CDS |
| CTTATATCAGACAACAAACC+TGG | 0.520795 | 3_2:+9706526 | None:intergenic |
| CTATGTTGTGAACACAAACC+AGG | 0.553984 | 3_2:-9706544 | Msa0394660:CDS |
| ATGATCATTAGCTTAATGTA+CGG | 0.579305 | 3_2:+9707414 | None:intergenic |
| AATGCAGCACAAGCAAGTGA+AGG | 0.583141 | 3_2:-9706655 | Msa0394660:CDS |
| ACAGAAACTCATTGCTAGCA+AGG | 0.589154 | 3_2:-9707208 | Msa0394660:intron |
| ATGCAGCACAAGCAAGTGAA+GGG | 0.608119 | 3_2:-9706654 | Msa0394660:CDS |
| AGATTTGAATCACAAGAAGG+TGG | 0.613421 | 3_2:-9706601 | Msa0394660:CDS |
| ATAAGATTTGAATCACAAGA+AGG | 0.621854 | 3_2:-9706604 | Msa0394660:CDS |
| GCAGAGAATGCAACTTTGGG+AGG | 0.622770 | 3_2:-9706466 | Msa0394660:CDS |
| CTGAAACCTGATGTCAGACA+TGG | 0.638276 | 3_2:+9707443 | None:intergenic |
| TGAAACCACAAATAGTCACA+TGG | 0.694501 | 3_2:-9707326 | Msa0394660:CDS |
| AACCACAAATAGTCACATGG+AGG | 0.755899 | 3_2:-9707323 | Msa0394660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAGTAAAGAAATATTTA+AGG | - | chr3_2:9706786-9706805 | Msa0394660:intron | 10.0% |
| !! | TAATAGTAAAGAAATATTTA+AGG | - | chr3_2:9706786-9706805 | Msa0394660:intron | 10.0% |
| !! | TAACTTAAGAAGAATTATAT+AGG | - | chr3_2:9706621-9706640 | Msa0394660:CDS | 15.0% |
| !! | AACTTAAGAAGAATTATATA+GGG | - | chr3_2:9706622-9706641 | Msa0394660:CDS | 15.0% |
| !!! | AATATTTAAGGTAAAGTTTT+TGG | - | chr3_2:9706798-9706817 | Msa0394660:intron | 15.0% |
| !!! | ACTTCATTTTATGATAATAA+GGG | - | chr3_2:9707289-9707308 | Msa0394660:CDS | 15.0% |
| !! | TAACTTAAGAAGAATTATAT+AGG | - | chr3_2:9706621-9706640 | Msa0394660:CDS | 15.0% |
| !! | AACTTAAGAAGAATTATATA+GGG | - | chr3_2:9706622-9706641 | Msa0394660:CDS | 15.0% |
| !!! | AATATTTAAGGTAAAGTTTT+TGG | - | chr3_2:9706798-9706817 | Msa0394660:intron | 15.0% |
| !!! | ACTTCATTTTATGATAATAA+GGG | - | chr3_2:9707289-9707308 | Msa0394660:CDS | 15.0% |
| !! | TTTGTCAAACTAAGTTAAAA+AGG | + | chr3_2:9707054-9707073 | None:intergenic | 20.0% |
| !!! | CACTTCATTTTATGATAATA+AGG | - | chr3_2:9707288-9707307 | Msa0394660:CDS | 20.0% |
| !! | TTTGTCAAACTAAGTTAAAA+AGG | + | chr3_2:9707054-9707073 | None:intergenic | 20.0% |
| !!! | CACTTCATTTTATGATAATA+AGG | - | chr3_2:9707288-9707307 | Msa0394660:CDS | 20.0% |
| !! | ATGATCATTAGCTTAATGTA+CGG | + | chr3_2:9706366-9706385 | None:intergenic | 25.0% |
| ! | TTAAGCTAATGATCATCTTA+TGG | - | chr3_2:9706370-9706389 | Msa0394660:CDS | 25.0% |
| ! | TTCTTTACTATTAGTACCTA+TGG | + | chr3_2:9706779-9706798 | None:intergenic | 25.0% |
| ! | ATACAAAGACATCAAAGATT+TGG | - | chr3_2:9706962-9706981 | Msa0394660:intron | 25.0% |
| ! | TCTACACAAATATACAAACA+TGG | - | chr3_2:9706991-9707010 | Msa0394660:intron | 25.0% |
| ! | ATAAGATTTGAATCACAAGA+AGG | - | chr3_2:9707173-9707192 | Msa0394660:intron | 25.0% |
| !! | ATGATCATTAGCTTAATGTA+CGG | + | chr3_2:9706366-9706385 | None:intergenic | 25.0% |
| ! | TTAAGCTAATGATCATCTTA+TGG | - | chr3_2:9706370-9706389 | Msa0394660:CDS | 25.0% |
| ! | TTCTTTACTATTAGTACCTA+TGG | + | chr3_2:9706779-9706798 | None:intergenic | 25.0% |
| ! | ATACAAAGACATCAAAGATT+TGG | - | chr3_2:9706962-9706981 | Msa0394660:intron | 25.0% |
| ! | TCTACACAAATATACAAACA+TGG | - | chr3_2:9706991-9707010 | Msa0394660:intron | 25.0% |
| ! | ATAAGATTTGAATCACAAGA+AGG | - | chr3_2:9707173-9707192 | Msa0394660:intron | 25.0% |
| GAGAGATATATGAAAGAGAA+TGG | - | chr3_2:9706534-9706553 | Msa0394660:CDS | 30.0% | |
| TGATAACTCTATATCTGCAT+TGG | - | chr3_2:9706662-9706681 | Msa0394660:CDS | 30.0% | |
| ! | ACATTTAGAGTGCTTAATGA+GGG | - | chr3_2:9706901-9706920 | Msa0394660:intron | 30.0% |
| TGTAATAACTTCAGCTAGTA+AGG | + | chr3_2:9707081-9707100 | None:intergenic | 30.0% | |
| ! | CTTATCTCATGATTGTCTTT+TGG | + | chr3_2:9707158-9707177 | None:intergenic | 30.0% |
| GTGATGCTCTAATTGAATAA+GGG | + | chr3_2:9707214-9707233 | None:intergenic | 30.0% | |
| AGTGATGCTCTAATTGAATA+AGG | + | chr3_2:9707215-9707234 | None:intergenic | 30.0% | |
| GAGAGATATATGAAAGAGAA+TGG | - | chr3_2:9706534-9706553 | Msa0394660:CDS | 30.0% | |
| TGATAACTCTATATCTGCAT+TGG | - | chr3_2:9706662-9706681 | Msa0394660:CDS | 30.0% | |
| ! | ACATTTAGAGTGCTTAATGA+GGG | - | chr3_2:9706901-9706920 | Msa0394660:intron | 30.0% |
| TGTAATAACTTCAGCTAGTA+AGG | + | chr3_2:9707081-9707100 | None:intergenic | 30.0% | |
| ! | CTTATCTCATGATTGTCTTT+TGG | + | chr3_2:9707158-9707177 | None:intergenic | 30.0% |
| GTGATGCTCTAATTGAATAA+GGG | + | chr3_2:9707214-9707233 | None:intergenic | 30.0% | |
| AGTGATGCTCTAATTGAATA+AGG | + | chr3_2:9707215-9707234 | None:intergenic | 30.0% | |
| TAAGAAGTTCGTCCAAAATC+CGG | + | chr3_2:9706405-9706424 | None:intergenic | 35.0% | |
| TGTGACTATTTGTGGTTTCA+TGG | + | chr3_2:9706451-9706470 | None:intergenic | 35.0% | |
| TGAAACCACAAATAGTCACA+TGG | - | chr3_2:9706451-9706470 | Msa0394660:CDS | 35.0% | |
| ! | GACATTTAGAGTGCTTAATG+AGG | - | chr3_2:9706900-9706919 | Msa0394660:intron | 35.0% |
| CTTAATCCTGTGCAGAAAAA+TGG | - | chr3_2:9706926-9706945 | Msa0394660:intron | 35.0% | |
| CAAAGACATCAAAGATTTGG+AGG | - | chr3_2:9706965-9706984 | Msa0394660:intron | 35.0% | |
| AGATTTGAATCACAAGAAGG+TGG | - | chr3_2:9707176-9707195 | Msa0394660:intron | 35.0% | |
| !! | TCACAAGAAGGTGGATTAAA+TGG | - | chr3_2:9707185-9707204 | Msa0394660:intron | 35.0% |
| CTTATATCAGACAACAAACC+TGG | + | chr3_2:9707254-9707273 | None:intergenic | 35.0% | |
| AGCAAAAAACTGTCGATACT+CGG | + | chr3_2:9707393-9707412 | None:intergenic | 35.0% | |
| TAAGAAGTTCGTCCAAAATC+CGG | + | chr3_2:9706405-9706424 | None:intergenic | 35.0% | |
| TGTGACTATTTGTGGTTTCA+TGG | + | chr3_2:9706451-9706470 | None:intergenic | 35.0% | |
| TGAAACCACAAATAGTCACA+TGG | - | chr3_2:9706451-9706470 | Msa0394660:CDS | 35.0% | |
| ! | GACATTTAGAGTGCTTAATG+AGG | - | chr3_2:9706900-9706919 | Msa0394660:intron | 35.0% |
| CTTAATCCTGTGCAGAAAAA+TGG | - | chr3_2:9706926-9706945 | Msa0394660:intron | 35.0% | |
| CAAAGACATCAAAGATTTGG+AGG | - | chr3_2:9706965-9706984 | Msa0394660:intron | 35.0% | |
| AGATTTGAATCACAAGAAGG+TGG | - | chr3_2:9707176-9707195 | Msa0394660:intron | 35.0% | |
| !! | TCACAAGAAGGTGGATTAAA+TGG | - | chr3_2:9707185-9707204 | Msa0394660:intron | 35.0% |
| CTTATATCAGACAACAAACC+TGG | + | chr3_2:9707254-9707273 | None:intergenic | 35.0% | |
| AGCAAAAAACTGTCGATACT+CGG | + | chr3_2:9707393-9707412 | None:intergenic | 35.0% | |
| CATCTTATGGCTCATCATAC+CGG | - | chr3_2:9706383-9706402 | Msa0394660:CDS | 40.0% | |
| AACCACAAATAGTCACATGG+AGG | - | chr3_2:9706454-9706473 | Msa0394660:CDS | 40.0% | |
| AACCTCCATGTGACTATTTG+TGG | + | chr3_2:9706459-9706478 | None:intergenic | 40.0% | |
| CATGGAGGTTAAATAGCTAC+TGG | - | chr3_2:9706469-9706488 | Msa0394660:CDS | 40.0% | |
| GCTAGCAATGAGTTTCTGTA+AGG | + | chr3_2:9706568-9706587 | None:intergenic | 40.0% | |
| ACAGAAACTCATTGCTAGCA+AGG | - | chr3_2:9706569-9706588 | Msa0394660:CDS | 40.0% | |
| TTCTACCTGTCTTAGTCTCA+TGG | - | chr3_2:9706876-9706895 | Msa0394660:intron | 40.0% | |
| !! | GTTTCTCCATTTTTCTGCAC+AGG | + | chr3_2:9706935-9706954 | None:intergenic | 40.0% |
| CTATGTTGTGAACACAAACC+AGG | - | chr3_2:9707233-9707252 | Msa0394660:CDS | 40.0% | |
| !!! | GAGTATCGACAGTTTTTTGC+TGG | - | chr3_2:9707392-9707411 | Msa0394660:CDS | 40.0% |
| CATCTTATGGCTCATCATAC+CGG | - | chr3_2:9706383-9706402 | Msa0394660:CDS | 40.0% | |
| AACCACAAATAGTCACATGG+AGG | - | chr3_2:9706454-9706473 | Msa0394660:CDS | 40.0% | |
| AACCTCCATGTGACTATTTG+TGG | + | chr3_2:9706459-9706478 | None:intergenic | 40.0% | |
| CATGGAGGTTAAATAGCTAC+TGG | - | chr3_2:9706469-9706488 | Msa0394660:CDS | 40.0% | |
| GCTAGCAATGAGTTTCTGTA+AGG | + | chr3_2:9706568-9706587 | None:intergenic | 40.0% | |
| ACAGAAACTCATTGCTAGCA+AGG | - | chr3_2:9706569-9706588 | Msa0394660:CDS | 40.0% | |
| TTCTACCTGTCTTAGTCTCA+TGG | - | chr3_2:9706876-9706895 | Msa0394660:intron | 40.0% | |
| !! | GTTTCTCCATTTTTCTGCAC+AGG | + | chr3_2:9706935-9706954 | None:intergenic | 40.0% |
| CTATGTTGTGAACACAAACC+AGG | - | chr3_2:9707233-9707252 | Msa0394660:CDS | 40.0% | |
| !!! | GAGTATCGACAGTTTTTTGC+TGG | - | chr3_2:9707392-9707411 | Msa0394660:CDS | 40.0% |
| ! | TGGCTCATCATACCGGATTT+TGG | - | chr3_2:9706390-9706409 | Msa0394660:CDS | 45.0% |
| GTGGTTTCATGGAGCGAATA+AGG | + | chr3_2:9706440-9706459 | None:intergenic | 45.0% | |
| ! | TCCTTTGTCGCTTCTACATC+AGG | + | chr3_2:9706754-9706773 | None:intergenic | 45.0% |
| GAAGCGACAAAGGAAACCAT+AGG | - | chr3_2:9706760-9706779 | Msa0394660:intron | 45.0% | |
| TGTCACCATGAGACTAAGAC+AGG | + | chr3_2:9706884-9706903 | None:intergenic | 45.0% | |
| AATGCAGCACAAGCAAGTGA+AGG | - | chr3_2:9707122-9707141 | Msa0394660:intron | 45.0% | |
| ATGCAGCACAAGCAAGTGAA+GGG | - | chr3_2:9707123-9707142 | Msa0394660:intron | 45.0% | |
| AAGGGCAGAGAATGCAACTT+TGG | - | chr3_2:9707307-9707326 | Msa0394660:CDS | 45.0% | |
| AGGGCAGAGAATGCAACTTT+GGG | - | chr3_2:9707308-9707327 | Msa0394660:CDS | 45.0% | |
| ! | TGGCTCATCATACCGGATTT+TGG | - | chr3_2:9706390-9706409 | Msa0394660:CDS | 45.0% |
| GTGGTTTCATGGAGCGAATA+AGG | + | chr3_2:9706440-9706459 | None:intergenic | 45.0% | |
| ! | TCCTTTGTCGCTTCTACATC+AGG | + | chr3_2:9706754-9706773 | None:intergenic | 45.0% |
| GAAGCGACAAAGGAAACCAT+AGG | - | chr3_2:9706760-9706779 | Msa0394660:intron | 45.0% | |
| TGTCACCATGAGACTAAGAC+AGG | + | chr3_2:9706884-9706903 | None:intergenic | 45.0% | |
| AATGCAGCACAAGCAAGTGA+AGG | - | chr3_2:9707122-9707141 | Msa0394660:intron | 45.0% | |
| ATGCAGCACAAGCAAGTGAA+GGG | - | chr3_2:9707123-9707142 | Msa0394660:intron | 45.0% | |
| AAGGGCAGAGAATGCAACTT+TGG | - | chr3_2:9707307-9707326 | Msa0394660:CDS | 45.0% | |
| AGGGCAGAGAATGCAACTTT+GGG | - | chr3_2:9707308-9707327 | Msa0394660:CDS | 45.0% | |
| CTGACATCAGGTTTCAGCTC+TGG | - | chr3_2:9706340-9706359 | Msa0394660:CDS | 50.0% | |
| GCCTGATGTAGAAGCGACAA+AGG | - | chr3_2:9706750-9706769 | Msa0394660:intron | 50.0% | |
| GCAGAGAATGCAACTTTGGG+AGG | - | chr3_2:9707311-9707330 | Msa0394660:CDS | 50.0% | |
| CTGACATCAGGTTTCAGCTC+TGG | - | chr3_2:9706340-9706359 | Msa0394660:CDS | 50.0% | |
| GCCTGATGTAGAAGCGACAA+AGG | - | chr3_2:9706750-9706769 | Msa0394660:intron | 50.0% | |
| GCAGAGAATGCAACTTTGGG+AGG | - | chr3_2:9707311-9707330 | Msa0394660:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 9706336 | 9707463 | 9706336 | ID=Msa0394660;Name=Msa0394660 |
| chr3_2 | mRNA | 9706336 | 9707463 | 9706336 | ID=Msa0394660-mRNA-1;Parent=Msa0394660;Name=Msa0394660-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|1|2|0|217 |
| chr3_2 | exon | 9707209 | 9707463 | 9707209 | ID=Msa0394660-mRNA-1:exon:2541;Parent=Msa0394660-mRNA-1 |
| chr3_2 | exon | 9706336 | 9706734 | 9706336 | ID=Msa0394660-mRNA-1:exon:2540;Parent=Msa0394660-mRNA-1 |
| chr3_2 | CDS | 9707209 | 9707463 | 9707209 | ID=Msa0394660-mRNA-1:cds;Parent=Msa0394660-mRNA-1 |
| chr3_2 | CDS | 9706336 | 9706734 | 9706336 | ID=Msa0394660-mRNA-1:cds;Parent=Msa0394660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
