AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380850 MtrunA17_Chr4g0055031 91.667 48 4 0 1 48 464 511 2.69e-25 98.2
Msa0380850 MtrunA17_Chr8g0361791 77.551 49 10 1 1 48 460 508 2.38e-19 81.3
Msa0380850 MtrunA17_Chr3g0092501 75.510 49 11 1 1 48 457 505 8.60e-19 79.7
Msa0380850 MtrunA17_Chr5g0416991 71.429 49 13 1 1 48 459 507 1.70e-17 76.3
Msa0380850 MtrunA17_Chr3g0113981 66.667 48 16 0 1 48 537 584 1.46e-15 70.5
Msa0380850 MtrunA17_Chr3g0112341 66.000 50 15 1 1 48 527 576 3.28e-15 69.7
Msa0380850 MtrunA17_Chr8g0372471 64.583 48 17 0 1 48 755 802 1.08e-14 68.2
Msa0380850 MtrunA17_Chr3g0130381 62.500 48 18 0 1 48 641 688 1.68e-14 67.8
Msa0380850 MtrunA17_Chr8g0350351 62.500 48 18 0 1 48 455 502 2.46e-14 67.0
Msa0380850 MtrunA17_Chr7g0214551 67.347 49 15 1 1 48 428 476 3.58e-14 66.6
Msa0380850 MtrunA17_Chr8g0369481 60.417 48 19 0 1 48 450 497 4.45e-14 66.2
Msa0380850 MtrunA17_Chr5g0435751 64.000 50 16 1 1 48 479 528 6.33e-14 65.9
Msa0380850 MtrunA17_Chr5g0409411 56.250 48 21 0 1 48 452 499 1.32e-13 65.1
Msa0380850 MtrunA17_Chr8g0384431 60.417 48 19 0 1 48 671 718 2.08e-13 64.7
Msa0380850 MtrunA17_Chr5g0404761 62.500 48 18 0 1 48 139 186 4.53e-13 63.2
Msa0380850 MtrunA17_Chr1g0171781 43.902 82 41 3 1 80 461 539 5.48e-13 63.2
Msa0380850 MtrunA17_Chr5g0437501 56.250 48 21 0 1 48 474 521 8.02e-13 62.8
Msa0380850 MtrunA17_Chr1g0203741 61.224 49 18 1 1 48 477 525 8.28e-13 62.8
Msa0380850 MtrunA17_Chr7g0246681 58.333 48 20 0 1 48 442 489 1.07e-12 62.4
Msa0380850 MtrunA17_Chr8g0350391 61.224 49 18 1 1 48 490 538 2.32e-12 61.6
Msa0380850 MtrunA17_Chr1g0159741 56.000 50 20 1 1 48 516 565 2.67e-12 61.2
Msa0380850 MtrunA17_Chr7g0246701 59.184 49 19 1 1 48 485 533 3.60e-12 60.8
Msa0380850 MtrunA17_Chr8g0388881 61.224 49 18 1 1 48 480 528 4.96e-12 60.5
Msa0380850 MtrunA17_Chr6g0472571 59.184 49 19 1 1 48 486 534 8.31e-12 60.1
Msa0380850 MtrunA17_Chr1g0155141 52.083 48 23 0 1 48 563 610 9.32e-12 59.7
Msa0380850 MtrunA17_Chr3g0125511 58.000 50 19 1 1 48 605 654 1.70e-11 58.9
Msa0380850 MtrunA17_Chr1g0187601 56.250 48 21 0 1 48 471 518 1.76e-11 58.9
Msa0380850 MtrunA17_Chr2g0278931 72.973 37 10 0 60 96 178 214 4.40e-11 57.8
Msa0380850 MtrunA17_Chr1g0183721 52.083 48 23 0 1 48 442 489 5.46e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380850 AT1G26850.2 83.673 49 7 1 1 48 468 516 1.54e-21 88.2
Msa0380850 AT1G26850.1 83.673 49 7 1 1 48 468 516 1.54e-21 88.2
Msa0380850 AT4G18030.1 79.167 48 10 0 1 48 464 511 5.94e-21 86.3
Msa0380850 AT2G40280.1 64.583 48 17 0 1 48 450 497 2.52e-15 70.5
Msa0380850 AT3G56080.2 60.417 48 19 0 1 48 477 524 4.36e-15 69.7
Msa0380850 AT3G56080.1 60.417 48 19 0 1 48 477 524 4.40e-15 69.7
Msa0380850 AT2G34300.2 64.583 48 17 0 1 48 622 669 1.70e-14 68.2
Msa0380850 AT2G34300.3 64.583 48 17 0 1 48 622 669 1.70e-14 68.2
Msa0380850 AT2G34300.1 64.583 48 17 0 1 48 622 669 1.70e-14 68.2
Msa0380850 AT5G64030.1 62.500 48 18 0 1 48 681 728 2.60e-14 67.4
Msa0380850 AT4G19120.3 60.417 48 19 0 1 48 452 499 3.20e-14 67.0
Msa0380850 AT4G19120.1 60.417 48 19 0 1 48 452 499 3.26e-14 67.0
Msa0380850 AT4G19120.2 60.417 48 19 0 1 48 452 499 3.26e-14 67.0
Msa0380850 AT1G29470.1 62.500 48 18 0 1 48 622 669 5.52e-14 66.6
Msa0380850 AT1G29470.2 62.500 48 18 0 1 48 622 669 5.52e-14 66.6
Msa0380850 AT4G00740.1 62.500 48 18 0 1 48 448 495 6.77e-14 66.2
Msa0380850 AT4G00740.2 62.500 48 18 0 1 48 448 495 6.77e-14 66.2
Msa0380850 AT3G51070.2 60.417 48 19 0 1 48 754 801 8.11e-14 66.2
Msa0380850 AT3G51070.1 60.417 48 19 0 1 48 754 801 8.14e-14 66.2
Msa0380850 AT1G31850.1 56.250 48 21 0 1 48 458 505 4.79e-13 63.9
Msa0380850 AT1G31850.2 56.250 48 21 0 1 48 458 505 4.79e-13 63.9
Msa0380850 AT1G31850.4 56.250 48 21 0 1 48 458 505 4.79e-13 63.9
Msa0380850 AT1G31850.3 56.250 48 21 0 1 48 458 505 4.79e-13 63.9
Msa0380850 AT4G10440.1 63.265 49 17 1 1 48 476 524 7.02e-13 63.5
Msa0380850 AT1G19430.1 58.333 48 20 0 1 48 586 633 7.03e-13 63.5
Msa0380850 AT1G19430.3 58.333 48 20 0 1 48 586 633 7.03e-13 63.5
Msa0380850 AT5G06050.1 58.000 50 19 1 1 48 523 572 1.70e-12 62.4
Msa0380850 AT2G39750.1 58.000 50 19 1 1 48 551 600 2.17e-12 62.0
Msa0380850 AT1G33170.1 61.224 49 18 1 1 48 494 542 2.19e-12 62.0
Msa0380850 AT2G45750.1 63.265 49 17 1 1 48 475 523 2.44e-12 62.0
Msa0380850 AT4G00750.1 61.224 49 18 1 1 48 482 530 4.21e-12 61.2
Msa0380850 AT2G43200.2 59.184 49 19 1 1 48 471 519 6.31e-12 60.8
Msa0380850 AT2G43200.1 59.184 49 19 1 1 48 471 519 6.31e-12 60.8
Msa0380850 AT3G10200.1 56.250 48 21 0 1 48 444 491 1.01e-11 60.1
Msa0380850 AT3G10200.2 56.250 48 21 0 1 48 444 491 1.02e-11 60.1
Msa0380850 AT5G04060.1 56.250 48 21 0 1 48 455 502 1.07e-11 60.1
Msa0380850 AT1G04430.1 56.250 48 21 0 1 48 464 511 3.34e-11 58.5
Msa0380850 AT1G04430.3 56.250 48 21 0 1 48 464 511 3.34e-11 58.5
Msa0380850 AT1G04430.2 56.250 48 21 0 1 48 464 511 3.34e-11 58.5

Find 171 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCCAATTATTCACATTT+TGG 0.089991 3_1:+82823989 Msa0380850:five_prime_UTR
CTATTGCGGAAAATAATTTA+AGG 0.198938 3_1:+82824037 Msa0380850:five_prime_UTR
TTGATATTCTCAGAAGATTT+TGG 0.217136 3_1:+82825985 Msa0380850:five_prime_UTR
CTCTGGTGTGGTTCTTATAT+TGG 0.220904 3_1:-82826637 None:intergenic
CTTAGATCCAAAAGCTATAA+TGG 0.230033 3_1:+82829850 Msa0380850:three_prime_UTR
TATCCCAAAATGTGAATAAT+TGG 0.240375 3_1:-82823993 None:intergenic
AGCAATATGGTGAAAGAAAA+TGG 0.245087 3_1:+82825373 Msa0380850:five_prime_UTR
GGGCAGCCGCGGCAAATGTC+TGG 0.292074 3_1:-82826718 None:intergenic
TGCAAATTGAGGCTTATATA+TGG 0.292804 3_1:+82828798 Msa0380850:CDS
ATCAAGAGGACAATAAATTA+TGG 0.301162 3_1:+82827861 Msa0380850:five_prime_UTR
CTATCTCATGCTACCATTGT+TGG 0.308689 3_1:+82829058 Msa0380850:CDS
GAGATGCCATCATCTTTAAC+AGG 0.318490 3_1:+82824829 Msa0380850:five_prime_UTR
TTCTTCCACAAAGAAAATTT+CGG 0.327903 3_1:+82822800 Msa0380850:five_prime_UTR
ACAATTGCTGACAACACTTT+AGG 0.337595 3_1:+82828028 Msa0380850:CDS
TTAGATCCAAAAGCTATAAT+GGG 0.358188 3_1:+82829851 Msa0380850:three_prime_UTR
GAGGGGATACTTTGATGTTA+TGG 0.363563 3_1:+82823191 Msa0380850:five_prime_UTR
TCCTCTTCCCATTGAGTTTG+CGG 0.367574 3_1:+82824740 Msa0380850:five_prime_UTR
CAAATAGCTGAGAAGTTAGA+AGG 0.389483 3_1:+82825399 Msa0380850:five_prime_UTR
GCTGCCAATGCAGCTGCATT+GGG 0.390710 3_1:+82829914 Msa0380850:three_prime_UTR
TCCACACACCTCACATCAAT+TGG 0.394399 3_1:+82823911 Msa0380850:five_prime_UTR
ATGGACATGAATGCAGGCTT+TGG 0.394536 3_1:+82827950 Msa0380850:CDS
TCTTTAACAGGGACTTTGCT+TGG 0.396893 3_1:+82824841 Msa0380850:five_prime_UTR
TACAGGATCGATCACTATCT+TGG 0.401089 3_1:+82825871 Msa0380850:intron
CACTAGATATCGGAATATAA+TGG 0.406226 3_1:+82827931 Msa0380850:exon
TGCTGCCAATGCAGCTGCAT+TGG 0.407547 3_1:+82829913 Msa0380850:three_prime_UTR
GATAAGAAAATTGTTGAAAC+TGG 0.410397 3_1:+82823950 Msa0380850:five_prime_UTR
GAAAATTTCGGCGGCGGTGG+TGG 0.410466 3_1:+82822812 Msa0380850:five_prime_UTR
ACTACATCCTCGAGTTTAAT+CGG 0.412521 3_1:-82826608 None:intergenic
ACCTTCATGGCTGCTTGAAA+TGG 0.413259 3_1:-82824146 None:intergenic
TTGCAATTGTCCCACCCCTT+TGG 0.416532 3_1:-82824390 None:intergenic
TTAATGCATGTTCATGTGAT+TGG 0.417004 3_1:-82824789 None:intergenic
GATGCACACGAAGATGAAAT+TGG 0.418146 3_1:-82829775 None:intergenic
CATCTAACATGTTAAATACT+AGG 0.419113 3_1:+82829794 Msa0380850:three_prime_UTR
CTTTAACAGGGACTTTGCTT+GGG 0.419659 3_1:+82824842 Msa0380850:five_prime_UTR
AAGAGAATCTCGGCGGCGGC+AGG 0.423359 3_1:+82822837 Msa0380850:five_prime_UTR
GGGAATGATAATGACATTGA+AGG 0.427964 3_1:+82829879 Msa0380850:three_prime_UTR
TCCAGCAACTTCACTTCTGC+TGG 0.428397 3_1:-82827754 None:intergenic
TCACTTCTGCTGGTTACCTC+AGG 0.428636 3_1:-82827744 None:intergenic
CATTGGGGAAGTAGTGATAA+TGG 0.434679 3_1:+82829930 Msa0380850:three_prime_UTR
TGCTGGTTACCTCAGGGATA+GGG 0.436916 3_1:-82827737 None:intergenic
GTCTGGGTTAAGCTGTCCTT+TGG 0.440910 3_1:-82826701 None:intergenic
CAACAATGGTAGCATGAGAT+AGG 0.448200 3_1:-82829057 None:intergenic
TTGATACGATTCAACTGTTA+CGG 0.449154 3_1:-82827843 None:intergenic
AGGTTACCTGCCACGTCCTT+CGG 0.449417 3_1:-82826010 None:intergenic
GTAATTCTGTACAATCTGAT+TGG 0.451846 3_1:+82823825 Msa0380850:intron
AGCTGAGAAGTTAGAAGGAA+GGG 0.452156 3_1:+82825404 Msa0380850:five_prime_UTR
CATCAATTGGAACAGCAGTT+AGG 0.454752 3_1:+82823924 Msa0380850:five_prime_UTR
CTTCCCCAATGCAGCTGCAT+TGG 0.458753 3_1:-82829918 None:intergenic
ATCTATGAAAGAGGTCTCAT+TGG 0.460262 3_1:+82828055 Msa0380850:CDS
ACGTCTTTAGCTATTCTAGC+AGG 0.462111 3_1:-82827816 None:intergenic
TGGATATGCAACACCTCCTC+TGG 0.463674 3_1:-82826654 None:intergenic
GAACAAATCACATACCTTCA+TGG 0.466673 3_1:-82824159 None:intergenic
ACCAGCAGAAGTGAAGTTGC+TGG 0.469933 3_1:+82827753 Msa0380850:five_prime_UTR
TTAGGTGTTATCTATGAAAG+AGG 0.473905 3_1:+82828046 Msa0380850:CDS
GCAATATGGTGAAAGAAAAT+GGG 0.474578 3_1:+82825374 Msa0380850:five_prime_UTR
GACATGAATGCAGGCTTTGG+AGG 0.475475 3_1:+82827953 Msa0380850:CDS
ATGATTAAAGGAAACTGATA+AGG 0.479594 3_1:+82825343 Msa0380850:intron
AAAGTCCCTGTTAAAGATGA+TGG 0.481757 3_1:-82824835 None:intergenic
TAAAGTGTTGTCAGCAATTG+TGG 0.482690 3_1:-82828026 None:intergenic
AACACAATCATCAGTCTCCT+TGG 0.485143 3_1:-82824500 None:intergenic
CTTTGCAGGAGTCACTCAAA+TGG 0.487638 3_1:+82828916 Msa0380850:intron
AAAGAAAATTTCGGCGGCGG+TGG 0.488570 3_1:+82822809 Msa0380850:five_prime_UTR
CTGCTGGTTACCTCAGGGAT+AGG 0.489415 3_1:-82827738 None:intergenic
TGATCGACACCACTAGATAT+CGG 0.489972 3_1:+82827921 Msa0380850:five_prime_UTR
ATAAGGTTGGTGAAGCAATA+TGG 0.490665 3_1:+82825360 Msa0380850:five_prime_UTR
TCATTGGTATTTATCATGAC+TGG 0.490759 3_1:+82828071 Msa0380850:CDS
CGGGGAGAAATGAAATTGAC+GGG 0.498235 3_1:+82822724 Msa0380850:five_prime_UTR
CTTCATAGATAATGCAAGAT+GGG 0.499428 3_1:+82826742 Msa0380850:five_prime_UTR
GTTCAAGCAACATGGTTGTA+AGG 0.502766 3_1:+82823218 Msa0380850:five_prime_UTR
AGAGAACGTAACAAATTGAC+GGG 0.504022 3_1:+82822666 Msa0380850:five_prime_UTR
TAATGTTAGCAGGTACCAAA+GGG 0.506277 3_1:+82824375 Msa0380850:intron
AAGTTAACTATTTACATGAC+AGG 0.508647 3_1:+82829104 Msa0380850:exon
GCATCTCCAAGACTCCTAGC+TGG 0.514709 3_1:-82824813 None:intergenic
ACCATTTCAAGCAGCCATGA+AGG 0.514906 3_1:+82824145 Msa0380850:five_prime_UTR
TAGATAATGCAAGATGGGAT+GGG 0.518772 3_1:+82826747 Msa0380850:five_prime_UTR
AGCAAAGTGTCAGTGCGTAA+TGG 0.520670 3_1:+82824418 Msa0380850:five_prime_UTR
GAGTTGAAGAAGCGCGTCTG+AGG 0.522997 3_1:+82822877 Msa0380850:five_prime_UTR
GGCAGCCGCGGCAAATGTCT+GGG 0.524804 3_1:-82826717 None:intergenic
AACGGTGGAACAAAATTGAC+GGG 0.528571 3_1:+82822705 Msa0380850:five_prime_UTR
TCATTTGCAGTTGCTACCAA+TGG 0.529211 3_1:+82829752 Msa0380850:intron
CTATCTTGGAAAAGAGCTTG+TGG 0.529498 3_1:+82825885 Msa0380850:five_prime_UTR
TACACTGCCACTTACTATTG+CGG 0.531677 3_1:+82824023 Msa0380850:five_prime_UTR
GAAATTGACGGGGAAAGAAA+AGG 0.531699 3_1:+82822735 Msa0380850:five_prime_UTR
TTAAAGGAAACTGATAAGGT+TGG 0.535969 3_1:+82825347 Msa0380850:intron
TTCAAGAGATAATTTGTCCA+AGG 0.536501 3_1:+82824483 Msa0380850:five_prime_UTR
ACGGGGAGAAATGAAATTGA+CGG 0.537328 3_1:+82822723 Msa0380850:five_prime_UTR
GGGAGGAAGGAGAAAGGAAA+CGG 0.537344 3_1:+82822687 Msa0380850:five_prime_UTR
GGAATGATAATGACATTGAA+GGG 0.537775 3_1:+82829880 Msa0380850:three_prime_UTR
TTGACGGGGAGGAAGGAGAA+AGG 0.539488 3_1:+82822681 Msa0380850:five_prime_UTR
AGAATTTAGATCATTCACTA+AGG 0.539887 3_1:+82823853 Msa0380850:five_prime_UTR
TAGCTGAGAAGTTAGAAGGA+AGG 0.540309 3_1:+82825403 Msa0380850:five_prime_UTR
CACAAAGAAAATTTCGGCGG+CGG 0.541757 3_1:+82822806 Msa0380850:five_prime_UTR
CTAATGTTAGCAGGTACCAA+AGG 0.542601 3_1:+82824374 Msa0380850:intron
ATTAACCCAGCTAGGAGTCT+TGG 0.544672 3_1:+82824807 Msa0380850:five_prime_UTR
GGAAAGAAAAGGAGGAATCA+AGG 0.548328 3_1:+82822746 Msa0380850:five_prime_UTR
ATAGATAATGCAAGATGGGA+TGG 0.550173 3_1:+82826746 Msa0380850:five_prime_UTR
ACTAAGGACATAGCTACCCT+TGG 0.552728 3_1:+82823869 Msa0380850:five_prime_UTR
AATATAATGGACATGAATGC+AGG 0.552897 3_1:+82827944 Msa0380850:exon
TCTCAAGCTCATTGTTGCAA+TGG 0.554056 3_1:+82824522 Msa0380850:five_prime_UTR
TTGGTACCGAAGGACGTGGC+AGG 0.554507 3_1:+82826004 Msa0380850:five_prime_UTR
AGTAGTGATAATGGCAATGA+GGG 0.555394 3_1:+82829939 Msa0380850:three_prime_UTR
GAGAAGTTAGAAGGAAGGGT+TGG 0.557009 3_1:+82825408 Msa0380850:five_prime_UTR
CAAAATGTGAATAATTGGCA+TGG 0.557216 3_1:-82823988 None:intergenic
TCTTCATAGATAATGCAAGA+TGG 0.568560 3_1:+82826741 Msa0380850:five_prime_UTR
ATGCAACACCTCCTCTGGTG+TGG 0.571539 3_1:-82826649 None:intergenic
CGTCTTTAGCTATTCTAGCA+GGG 0.573771 3_1:-82827815 None:intergenic
ATCTATGAAGAGGGCAGCCG+CGG 0.574298 3_1:-82826729 None:intergenic
GGGACTGCAAACAACCTAGC+AGG 0.575866 3_1:-82827795 None:intergenic
AGAGAATCTCGGCGGCGGCA+GGG 0.576739 3_1:+82822838 Msa0380850:five_prime_UTR
GGAGTCACTCAAATGGCACT+TGG 0.578405 3_1:+82828923 Msa0380850:intron
CACTTCTGCTGGTTACCTCA+GGG 0.578549 3_1:-82827743 None:intergenic
ACCGCAAACTCAATGGGAAG+AGG 0.580661 3_1:-82824741 None:intergenic
TGTTACTCTGTTGAACTCCA+AGG 0.584293 3_1:-82823886 None:intergenic
AATTGGAACAGCAGTTAGGA+AGG 0.585029 3_1:+82823928 Msa0380850:five_prime_UTR
CATTATATTCCGATATCTAG+TGG 0.586138 3_1:-82827930 None:intergenic
TCTGAGGATTGTGGTAATCA+TGG 0.586573 3_1:+82822893 Msa0380850:five_prime_UTR
AAACGGTGGAACAAAATTGA+CGG 0.586909 3_1:+82822704 Msa0380850:five_prime_UTR
TAACAAATTGACGGGGAGGA+AGG 0.587046 3_1:+82822674 Msa0380850:five_prime_UTR
CATCTCCAAGACTCCTAGCT+GGG 0.589057 3_1:-82824812 None:intergenic
TAATGACATTGAAGGGAGGA+AGG 0.589272 3_1:+82829887 Msa0380850:three_prime_UTR
GAGAGAACGTAACAAATTGA+CGG 0.590636 3_1:+82822665 Msa0380850:five_prime_UTR
CGGCGGCGGCAGGGATTGTG+CGG 0.594596 3_1:+82822847 Msa0380850:five_prime_UTR
AACAGTTGAATCGTATCAAG+AGG 0.599773 3_1:+82827847 Msa0380850:five_prime_UTR
AGATAATGCAAGATGGGATG+GGG 0.599941 3_1:+82826748 Msa0380850:five_prime_UTR
ATTGACGGGGAAAGAAAAGG+AGG 0.601079 3_1:+82822738 Msa0380850:five_prime_UTR
ATCTTGCATTATCTATGAAG+AGG 0.601254 3_1:-82826739 None:intergenic
TAATGGCAATGAGGGGTCGA+AGG 0.605324 3_1:+82829947 Msa0380850:three_prime_UTR
TGATGACAAAACTGTACCAA+AGG 0.605343 3_1:+82826685 Msa0380850:five_prime_UTR
TTGCGGAAAATAATTTAAGG+AGG 0.605859 3_1:+82824040 Msa0380850:five_prime_UTR
ACGAAGATGAAATTGGCCAT+TGG 0.607734 3_1:-82829768 None:intergenic
GGAGAAGAGAATCTCGGCGG+CGG 0.615480 3_1:+82822833 Msa0380850:five_prime_UTR
TCTTGCATTATCTATGAAGA+GGG 0.616374 3_1:-82826738 None:intergenic
GTTACTCTGTTGAACTCCAA+GGG 0.617553 3_1:-82823885 None:intergenic
GTTAGCAGGTACCAAAGGGG+TGG 0.618021 3_1:+82824379 Msa0380850:intron
GGTGGTGGAGAAGAGAATCT+CGG 0.623069 3_1:+82822827 Msa0380850:five_prime_UTR
TGATCTTGTTAAAGCAGCTG+AGG 0.629746 3_1:-82825468 None:intergenic
AAGTAGTGATAATGGCAATG+AGG 0.636419 3_1:+82829938 Msa0380850:three_prime_UTR
TCACAACTCGATGTCTCTCG+TGG 0.636462 3_1:+82824097 Msa0380850:five_prime_UTR
TATAAGAACCACACCAGAGG+AGG 0.636996 3_1:+82826641 Msa0380850:five_prime_UTR
TTAGCAGGTACCAAAGGGGT+GGG 0.638356 3_1:+82824380 Msa0380850:intron
ATGATAATGACATTGAAGGG+AGG 0.638674 3_1:+82829883 Msa0380850:three_prime_UTR
GAACATGCATTAACCCAGCT+AGG 0.642127 3_1:+82824799 Msa0380850:five_prime_UTR
AGAAGCGCGTCTGAGGATTG+TGG 0.648188 3_1:+82822884 Msa0380850:five_prime_UTR
TATGAGACCGATTAAACTCG+AGG 0.649881 3_1:+82826601 Msa0380850:five_prime_UTR
GCAAGCAGTGTAGAGAGCGA+TGG 0.650454 3_1:+82825430 Msa0380850:five_prime_UTR
TCCAATTGATGTGAGGTGTG+TGG 0.657683 3_1:-82823912 None:intergenic
TGATTGGAATGGTAGCTAAG+TGG 0.662300 3_1:-82824773 None:intergenic
TTCCACAAAGAAAATTTCGG+CGG 0.662432 3_1:+82822803 Msa0380850:five_prime_UTR
AGCAGAAGTGAAGTTGCTGG+AGG 0.665344 3_1:+82827756 Msa0380850:five_prime_UTR
GCATGTTCATGTGATTGGAA+TGG 0.665840 3_1:-82824784 None:intergenic
ATGGCTGAGTTCAAGCAACA+TGG 0.669427 3_1:+82823210 Msa0380850:five_prime_UTR
GGAAAGCATTACACACCAAG+AGG 0.670420 3_1:+82826792 Msa0380850:five_prime_UTR
CTGCTGTTCCAATTGATGTG+AGG 0.671345 3_1:-82823919 None:intergenic
ATGTATTGCCTCGACCACAA+AGG 0.674403 3_1:-82825949 None:intergenic
AACGTAACAAATTGACGGGG+AGG 0.675068 3_1:+82822670 Msa0380850:five_prime_UTR
AGATGCCATCATCTTTAACA+GGG 0.675085 3_1:+82824830 Msa0380850:five_prime_UTR
CAATATAAGAACCACACCAG+AGG 0.676256 3_1:+82826638 Msa0380850:five_prime_UTR
CTTAACCCAGACATTTGCCG+CGG 0.676329 3_1:+82826712 Msa0380850:five_prime_UTR
CTGCCAATGCAGCTGCATTG+GGG 0.678019 3_1:+82829915 Msa0380850:three_prime_UTR
TGCGTAATGGAAGTTGTCAG+TGG 0.682900 3_1:+82824431 Msa0380850:five_prime_UTR
GAAAAGGAGGAATCAAGGAA+CGG 0.684383 3_1:+82822751 Msa0380850:five_prime_UTR
AGGAAGGAGAAAGGAAACGG+TGG 0.688775 3_1:+82822690 Msa0380850:five_prime_UTR
TTGTGGAAGAACAGAGAACG+CGG 0.692429 3_1:-82822788 None:intergenic
ATTCAAGCAGTATCTGACTG+AGG 0.704574 3_1:+82825490 Msa0380850:five_prime_UTR
CTGCAAAATCCCTATCCCTG+AGG 0.730548 3_1:+82827728 Msa0380850:five_prime_UTR
GTAGTGATAATGGCAATGAG+GGG 0.736284 3_1:+82829940 Msa0380850:three_prime_UTR
GGGGAGAAATGAAATTGACG+GGG 0.748881 3_1:+82822725 Msa0380850:five_prime_UTR
AATGTTAGCAGGTACCAAAG+GGG 0.753582 3_1:+82824376 Msa0380850:intron
ACGGTGGAACAAAATTGACG+GGG 0.768970 3_1:+82822706 Msa0380850:five_prime_UTR
GAGAACGTAACAAATTGACG+GGG 0.776657 3_1:+82822667 Msa0380850:five_prime_UTR
GGTGGAGAAGAGAATCTCGG+CGG 0.777683 3_1:+82822830 Msa0380850:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAATACACTTTTTAAA+AGG - chr3_1:82823064-82823083 None:intergenic 10.0%
!!! TGTATTTATTTTTTGTTTAT+GGG + chr3_1:82823073-82823092 Msa0380850:intron 10.0%
!!! TTTTTTAAAAAACTTTTGTT+TGG + chr3_1:82824955-82824974 Msa0380850:intron 10.0%
!!! TTTTTAAAAAACTTTTGTTT+GGG + chr3_1:82824956-82824975 Msa0380850:intron 10.0%
!!! TGTTATTAATATGTTTTATT+TGG + chr3_1:82825316-82825335 Msa0380850:intron 10.0%
!!! AATTAATCATTTTTTAGTAT+AGG - chr3_1:82828165-82828184 None:intergenic 10.0%
!!! AATTTTTTTTATTACTTATG+TGG + chr3_1:82829410-82829429 Msa0380850:intron 10.0%
!!! TTTATACTTCAATTTTTTTT+TGG + chr3_1:82829468-82829487 Msa0380850:intron 10.0%
!!! TTATACTTCAATTTTTTTTT+GGG + chr3_1:82829469-82829488 Msa0380850:intron 10.0%
!!! GTGTATTTATTTTTTGTTTA+TGG + chr3_1:82823072-82823091 Msa0380850:intron 15.0%
!!! TTTGAATTTTTTGATGATTA+TGG + chr3_1:82823428-82823447 Msa0380850:intron 15.0%
!!! TTATATGTTTTCTTTGATTA+TGG + chr3_1:82823586-82823605 Msa0380850:intron 15.0%
!!! AATGTGTTTATTCTTTTTTT+GGG + chr3_1:82824701-82824720 Msa0380850:intron 15.0%
!!! TTTTGTTCTAATTATTTTTG+AGG + chr3_1:82824982-82825001 Msa0380850:intron 15.0%
!!! TTTTTTTTGAAGAAAAAAGA+GGG - chr3_1:82826178-82826197 None:intergenic 15.0%
!!! TTTTTTTTTGAAGAAAAAAG+AGG - chr3_1:82826179-82826198 None:intergenic 15.0%
!!! TGGTTATATACTTTTTTTAT+AGG + chr3_1:82826277-82826296 Msa0380850:intron 15.0%
!! TTTATAGGCAAATATTAATA+AGG + chr3_1:82826292-82826311 Msa0380850:intron 15.0%
!!! TGGTTATATACTTTTTTTAT+AGG + chr3_1:82826277-82826296 Msa0380850:intron 15.0%
!!! ATTTAAAACAGATGAATTTA+AGG - chr3_1:82826521-82826540 None:intergenic 15.0%
!!! TTCTTATTTTATATCAAATG+AGG - chr3_1:82827063-82827082 None:intergenic 15.0%
!! TTATCTAAATCACATAAATT+GGG - chr3_1:82827504-82827523 None:intergenic 15.0%
!! ATTATCTAAATCACATAAAT+TGG - chr3_1:82827505-82827524 None:intergenic 15.0%
!!! AAACTGATGATTATTTTAAA+TGG + chr3_1:82828189-82828208 Msa0380850:intron 15.0%
!!! TTTATGATATAGAAAGTTTT+TGG + chr3_1:82828258-82828277 Msa0380850:intron 15.0%
!!! ATAGAAAGTTTTTTGATTAT+AGG + chr3_1:82828349-82828368 Msa0380850:intron 15.0%
!!! GATGAATTTTATGTATTAAT+TGG + chr3_1:82828383-82828402 Msa0380850:intron 15.0%
!!! AATTAATTTTTTTGATAAGC+AGG - chr3_1:82828705-82828724 None:intergenic 15.0%
!!! TTATACAAAATGGTTTATTT+TGG + chr3_1:82828723-82828742 Msa0380850:intron 15.0%
!!! ATTTTTTTTCTTCATTTTTC+AGG + chr3_1:82829014-82829033 Msa0380850:intron 15.0%
!! TATATATATATACTTCGATT+TGG - chr3_1:82829994-82830013 None:intergenic 15.0%
!! TATTAATTTAGTGATGTTGT+TGG + chr3_1:82823149-82823168 Msa0380850:intron 20.0%
!!! ATATAAACCCTAATTTTCAT+GGG - chr3_1:82823316-82823335 None:intergenic 20.0%
!!! GAATTATATGTCTAATTTGT+TGG + chr3_1:82823364-82823383 Msa0380850:intron 20.0%
!! ATAGAATCTTATGATATTCA+TGG + chr3_1:82823532-82823551 Msa0380850:intron 20.0%
!!! CAACAAATTTTCTATATCAT+TGG - chr3_1:82823637-82823656 None:intergenic 20.0%
!! CAATGATATAGAAAATTTGT+TGG + chr3_1:82823635-82823654 Msa0380850:intron 20.0%
!!! TATAGAAAATTTGTTGGTTT+TGG + chr3_1:82823641-82823660 Msa0380850:intron 20.0%
!!! TTAATTGTTTTTTTTACTGC+AGG + chr3_1:82824205-82824224 Msa0380850:intron 20.0%
!!! ATTTCAAACATAAAAGCATT+TGG - chr3_1:82824291-82824310 None:intergenic 20.0%
!!! ATACTTTTGCATAATCTATA+TGG + chr3_1:82824458-82824477 Msa0380850:five_prime_UTR 20.0%
!!! CAATGTGTTTATTCTTTTTT+TGG + chr3_1:82824700-82824719 Msa0380850:intron 20.0%
!! ATAGAAAACATAAACATACA+TGG - chr3_1:82824872-82824891 None:intergenic 20.0%
!!! TTATTTTTGTGTTTTGATCA+AGG + chr3_1:82825216-82825235 Msa0380850:intron 20.0%
!! TTATTTGGTATGATGATTAA+AGG + chr3_1:82825331-82825350 Msa0380850:intron 20.0%
!!! TCTATTTTCATAAGCTATAT+TGG + chr3_1:82825662-82825681 Msa0380850:intron 20.0%
!!! GTAAAGTGCTTTATTTAAAA+TGG + chr3_1:82825839-82825858 Msa0380850:intron 20.0%
!! TAAAATGGAAAACATTATAC+AGG + chr3_1:82825854-82825873 Msa0380850:intron 20.0%
!! CAAAAATTAGATTTGAGAAT+CGG - chr3_1:82825927-82825946 None:intergenic 20.0%
!!! CACTTTTTATGATCTTAAAA+TGG + chr3_1:82826053-82826072 Msa0380850:intron 20.0%
!!! TTTCTACTTATATTTAAGGT+CGG - chr3_1:82826376-82826395 None:intergenic 20.0%
!! AACCTTTCTACTTATATTTA+AGG - chr3_1:82826380-82826399 None:intergenic 20.0%
!!! GATACTTTATTTAGTACAAA+GGG - chr3_1:82826937-82826956 None:intergenic 20.0%
!!! AGATTTTTAAGTATTTGAGA+TGG + chr3_1:82827235-82827254 Msa0380850:intron 20.0%
!!! TTTTTTTTTGCTAAAGTAGA+CGG + chr3_1:82827374-82827393 Msa0380850:intron 20.0%
!! GATCTAGAAAACAATATTAT+CGG + chr3_1:82827408-82827427 Msa0380850:intron 20.0%
!!! TATAATCATTTGTTGTTAGA+CGG + chr3_1:82827592-82827611 Msa0380850:intron 20.0%
!! TCATGCTAAAAAATTTGTAA+TGG + chr3_1:82827684-82827703 Msa0380850:intron 20.0%
!! AAGAACCTAATATGATAAAT+TGG + chr3_1:82828543-82828562 Msa0380850:intron 20.0%
!! TGTATCCAATTTATCATATT+AGG - chr3_1:82828551-82828570 None:intergenic 20.0%
!!! AACAAAATGAGTGTTATTAA+AGG + chr3_1:82829242-82829261 Msa0380850:intron 20.0%
!!! ACAAAATGAGTGTTATTAAA+GGG + chr3_1:82829243-82829262 Msa0380850:intron 20.0%
!! TTCTTTATTCTTCAAATGAA+TGG + chr3_1:82829296-82829315 Msa0380850:intron 20.0%
!! TAATAATTAAGATGCTTAAG+TGG - chr3_1:82829529-82829548 None:intergenic 20.0%
!!! TCATTGGTAACATTTTTAAT+TGG + chr3_1:82829654-82829673 Msa0380850:intron 20.0%
! TTCTTCCACAAAGAAAATTT+CGG + chr3_1:82822800-82822819 Msa0380850:five_prime_UTR 25.0%
!! GTAATTGATGTGAATTTTTC+AGG + chr3_1:82823016-82823035 Msa0380850:five_prime_UTR 25.0%
!!! TTATGGGTTTTGTTTTAGAA+AGG + chr3_1:82823089-82823108 Msa0380850:intron 25.0%
!!! TATGGGTTTTGTTTTAGAAA+GGG + chr3_1:82823090-82823109 Msa0380850:intron 25.0%
!! CATATAAACCCTAATTTTCA+TGG - chr3_1:82823317-82823336 None:intergenic 25.0%
! AAATTAGGGTTTATATGAGT+TGG + chr3_1:82823320-82823339 Msa0380850:intron 25.0%
!! GTTGGATTCAATATATCTTT+TGG + chr3_1:82823338-82823357 Msa0380850:intron 25.0%
!! GATTCAATATATCTTTTGGT+TGG + chr3_1:82823342-82823361 Msa0380850:intron 25.0%
! AAAATTCAAAACCATCAATC+CGG - chr3_1:82823418-82823437 None:intergenic 25.0%
! AGAATTTAGATCATTCACTA+AGG + chr3_1:82823853-82823872 Msa0380850:five_prime_UTR 25.0%
! GATAAGAAAATTGTTGAAAC+TGG + chr3_1:82823950-82823969 Msa0380850:five_prime_UTR 25.0%
!! ATGCCAATTATTCACATTTT+GGG + chr3_1:82823990-82824009 Msa0380850:five_prime_UTR 25.0%
! TATCCCAAAATGTGAATAAT+TGG - chr3_1:82823996-82824015 None:intergenic 25.0%
! CTATTGCGGAAAATAATTTA+AGG + chr3_1:82824037-82824056 Msa0380850:five_prime_UTR 25.0%
!!! AAAAAGACAGTTTTCTAGAA+AGG - chr3_1:82824186-82824205 None:intergenic 25.0%
!!! CACCAGATTTTTTTATAACA+GGG - chr3_1:82824251-82824270 None:intergenic 25.0%
!!! ACACCAGATTTTTTTATAAC+AGG - chr3_1:82824252-82824271 None:intergenic 25.0%
! TTCTGTTACTAGAAATAGAA+AGG + chr3_1:82824316-82824335 Msa0380850:intron 25.0%
! TCTGTTACTAGAAATAGAAA+GGG + chr3_1:82824317-82824336 Msa0380850:intron 25.0%
! AATTGAATTCTAATGTTAGC+AGG + chr3_1:82824365-82824384 Msa0380850:intron 25.0%
! CTAATAAAGTTAACAGCAAA+AGG - chr3_1:82824588-82824607 None:intergenic 25.0%
!!! TCAAAAATATGGGTTGTTTT+CGG - chr3_1:82825068-82825087 None:intergenic 25.0%
! ATCAGAAACCTCAAAAATAT+GGG - chr3_1:82825078-82825097 None:intergenic 25.0%
! AGAACAAAATATGAAATCCA+AGG - chr3_1:82825144-82825163 None:intergenic 25.0%
! ATGATTAAAGGAAACTGATA+AGG + chr3_1:82825343-82825362 Msa0380850:intron 25.0%
! ACTTATATGATAAGTGTGAA+TGG - chr3_1:82825575-82825594 None:intergenic 25.0%
!!! AACAATCTTAGAAGTGTTTA+TGG + chr3_1:82825753-82825772 Msa0380850:intron 25.0%
!! ATCTAATTTTTGAACCTTTG+TGG + chr3_1:82825935-82825954 Msa0380850:five_prime_UTR 25.0%
!! TTGATATTCTCAGAAGATTT+TGG + chr3_1:82825985-82826004 Msa0380850:five_prime_UTR 25.0%
! TGTATGTACTTTGACAATTA+TGG + chr3_1:82826108-82826127 Msa0380850:intron 25.0%
! CAAATATTAATAAGGTCTCA+TGG + chr3_1:82826300-82826319 Msa0380850:intron 25.0%
! GACCTTAAATATAAGTAGAA+AGG + chr3_1:82826375-82826394 Msa0380850:intron 25.0%
!! ACAAATACATGTACCTTTTT+CGG + chr3_1:82826412-82826431 Msa0380850:intron 25.0%
!!! ACCTTTTTCGGTTAAATATA+AGG + chr3_1:82826424-82826443 Msa0380850:intron 25.0%
!! CGATACTTTATTTAGTACAA+AGG - chr3_1:82826938-82826957 None:intergenic 25.0%
!! ATACCTACTATTGACTATAT+TGG - chr3_1:82826961-82826980 None:intergenic 25.0%
!! TCTCAATGACTACAAAATTT+TGG + chr3_1:82827024-82827043 Msa0380850:intron 25.0%
!! CAATATTATCGGCATTTTTA+TGG + chr3_1:82827419-82827438 Msa0380850:intron 25.0%
! GATTATAAGTATAAAGATCC+AGG - chr3_1:82827579-82827598 None:intergenic 25.0%
! TTCTTATAATTCCACGATTT+CGG + chr3_1:82827632-82827651 Msa0380850:intron 25.0%
! GCTAAAAAATTTGTAATGGT+AGG + chr3_1:82827688-82827707 Msa0380850:intron 25.0%
! TAATGGTAGGTACAAAAAAA+TGG + chr3_1:82827701-82827720 Msa0380850:intron 25.0%
! ATCAAGAGGACAATAAATTA+TGG + chr3_1:82827861-82827880 Msa0380850:five_prime_UTR 25.0%
!!! AAAGTTTTTGGATCATAGTA+AGG + chr3_1:82828270-82828289 Msa0380850:intron 25.0%
! TTATGTATTAATTGGTGAGA+CGG + chr3_1:82828391-82828410 Msa0380850:intron 25.0%
! TCTGAGAAAATTAGTGAAAT+TGG - chr3_1:82828468-82828487 None:intergenic 25.0%
!! TCACTAATTTTCTCAGAATT+TGG + chr3_1:82828471-82828490 Msa0380850:intron 25.0%
!! TTCAAATATTTTTCCTCTCA+AGG - chr3_1:82828524-82828543 None:intergenic 25.0%
! AAGTTAACTATTTACATGAC+AGG + chr3_1:82829104-82829123 Msa0380850:exon 25.0%
! CTACACTTAAATTATCTCTT+TGG - chr3_1:82829165-82829184 None:intergenic 25.0%
! AAGAGATAATTTAAGTGTAG+TGG + chr3_1:82829165-82829184 Msa0380850:intron 25.0%
! TTTATTCTTCAAATGAATGG+TGG + chr3_1:82829299-82829318 Msa0380850:intron 25.0%
! AACAATGTTCATCACAATAA+TGG - chr3_1:82829499-82829518 None:intergenic 25.0%
! TGCATTTAATGAACATTGTT+TGG + chr3_1:82829691-82829710 Msa0380850:intron 25.0%
! CATCTAACATGTTAAATACT+AGG + chr3_1:82829794-82829813 Msa0380850:three_prime_UTR 25.0%
! TTAGATCCAAAAGCTATAAT+GGG + chr3_1:82829851-82829870 Msa0380850:three_prime_UTR 25.0%
!!! AAAAGCTATAATGGGTTTTT+GGG + chr3_1:82829859-82829878 Msa0380850:three_prime_UTR 25.0%
! CATCATGCATGTTAATTTTG+AGG + chr3_1:82822927-82822946 Msa0380850:five_prime_UTR 30.0%
CTAAAAAAAACTGAAGAAGC+TGG - chr3_1:82822983-82823002 None:intergenic 30.0%
!!! CAGCTTCTTCAGTTTTTTTT+AGG + chr3_1:82822981-82823000 Msa0380850:five_prime_UTR 30.0%
TGACAATTCCCATGAAAATT+AGG + chr3_1:82823305-82823324 Msa0380850:intron 30.0%
GACAATTCCCATGAAAATTA+GGG + chr3_1:82823306-82823325 Msa0380850:intron 30.0%
!! AATTTGTTGGCTTTCTCATT+TGG + chr3_1:82823377-82823396 Msa0380850:intron 30.0%
! TTCATGGTTCATGTGTATTT+TGG + chr3_1:82823548-82823567 Msa0380850:intron 30.0%
AGATTGTACAGAATTACTGA+TGG - chr3_1:82823822-82823841 None:intergenic 30.0%
GTAATTCTGTACAATCTGAT+TGG + chr3_1:82823825-82823844 Msa0380850:intron 30.0%
CAAAATGTGAATAATTGGCA+TGG - chr3_1:82823991-82824010 None:intergenic 30.0%
! CATGCCAATTATTCACATTT+TGG + chr3_1:82823989-82824008 Msa0380850:five_prime_UTR 30.0%
! TTATTTTCCGCAATAGTAAG+TGG - chr3_1:82824033-82824052 None:intergenic 30.0%
TTGCGGAAAATAATTTAAGG+AGG + chr3_1:82824040-82824059 Msa0380850:five_prime_UTR 30.0%
GTCCCTGTTATAAAAAAATC+TGG + chr3_1:82824246-82824265 Msa0380850:intron 30.0%
! TTCAAGAGATAATTTGTCCA+AGG + chr3_1:82824483-82824502 Msa0380850:five_prime_UTR 30.0%
!! TTTTTGGGAACTATAGATCT+TGG + chr3_1:82824716-82824735 Msa0380850:intron 30.0%
TTAATGCATGTTCATGTGAT+TGG - chr3_1:82824792-82824811 None:intergenic 30.0%
CTGTCTACATCATGAAAATA+AGG - chr3_1:82824897-82824916 None:intergenic 30.0%
!! GAAAACAACCCATATTTTTG+AGG + chr3_1:82825067-82825086 Msa0380850:intron 30.0%
CATCAGAAACCTCAAAAATA+TGG - chr3_1:82825079-82825098 None:intergenic 30.0%
TTTCACTTATTTGAAAGCCT+TGG + chr3_1:82825124-82825143 Msa0380850:intron 30.0%
!! TCTTTGCAATTCTGTTGTTT+TGG + chr3_1:82825161-82825180 Msa0380850:intron 30.0%
!!! ATTCTGTTGTTTTGGTCATT+TGG + chr3_1:82825169-82825188 Msa0380850:intron 30.0%
!!! TTGGTCATTTGGTTTTGTAT+TGG + chr3_1:82825180-82825199 Msa0380850:intron 30.0%
!!! TTGTGTTTTGATCAAGGTTT+TGG + chr3_1:82825222-82825241 Msa0380850:intron 30.0%
!!! TGTGTTTTGATCAAGGTTTT+GGG + chr3_1:82825223-82825242 Msa0380850:intron 30.0%
TTAAAGGAAACTGATAAGGT+TGG + chr3_1:82825347-82825366 Msa0380850:intron 30.0%
AGCAATATGGTGAAAGAAAA+TGG + chr3_1:82825373-82825392 Msa0380850:five_prime_UTR 30.0%
GCAATATGGTGAAAGAAAAT+GGG + chr3_1:82825374-82825393 Msa0380850:five_prime_UTR 30.0%
TGACTGTGTTTGGATATAAT+AGG + chr3_1:82825541-82825560 Msa0380850:intron 30.0%
TAATTAGACCATGTTTGGAT+TGG - chr3_1:82825800-82825819 None:intergenic 30.0%
ACAGATAATTAGACCATGTT+TGG - chr3_1:82825805-82825824 None:intergenic 30.0%
! AAAAAGTGTAAATGCTGCAA+AGG - chr3_1:82826041-82826060 None:intergenic 30.0%
ATTGTCAAAGTACATACACA+TGG - chr3_1:82826106-82826125 None:intergenic 30.0%
AGAGGACATTAGAAATGAAA+AGG + chr3_1:82826247-82826266 Msa0380850:intron 30.0%
AGAAATGAAAAGGTCTCATA+TGG + chr3_1:82826257-82826276 Msa0380850:intron 30.0%
! TACTTATATTTAAGGTCGGA+GGG - chr3_1:82826372-82826391 None:intergenic 30.0%
GCCTTATATTTAACCGAAAA+AGG - chr3_1:82826428-82826447 None:intergenic 30.0%
CATGACTTTCAATTGCTTAA+TGG + chr3_1:82826554-82826573 Msa0380850:intron 30.0%
!! TACAGTTTTGTCATCAATGT+AGG - chr3_1:82826681-82826700 None:intergenic 30.0%
TCTTGCATTATCTATGAAGA+GGG - chr3_1:82826741-82826760 None:intergenic 30.0%
ATCTTGCATTATCTATGAAG+AGG - chr3_1:82826742-82826761 None:intergenic 30.0%
TCTTCATAGATAATGCAAGA+TGG + chr3_1:82826741-82826760 Msa0380850:five_prime_UTR 30.0%
CTTCATAGATAATGCAAGAT+GGG + chr3_1:82826742-82826761 Msa0380850:five_prime_UTR 30.0%
!!! TACCTTTTTTTATGAAGGCT+GGG + chr3_1:82826771-82826790 Msa0380850:five_prime_UTR 30.0%
TGTATTCTGTATTGTGACAT+TGG - chr3_1:82827003-82827022 None:intergenic 30.0%
!! CTTGTTATTATGCATCAGAT+AGG - chr3_1:82827205-82827224 None:intergenic 30.0%
TAACCAAGAAACACTTATTC+TGG - chr3_1:82827347-82827366 None:intergenic 30.0%
! TAGATAATGCTGATGATGTT+TGG + chr3_1:82827517-82827536 Msa0380850:intron 30.0%
AATTGAAAAAGTTTCCTGCT+AGG + chr3_1:82827781-82827800 Msa0380850:five_prime_UTR 30.0%
TTGATACGATTCAACTGTTA+CGG - chr3_1:82827846-82827865 None:intergenic 30.0%
CATTATATTCCGATATCTAG+TGG - chr3_1:82827933-82827952 None:intergenic 30.0%
CACTAGATATCGGAATATAA+TGG + chr3_1:82827931-82827950 Msa0380850:exon 30.0%
!! AATATAATGGACATGAATGC+AGG + chr3_1:82827944-82827963 Msa0380850:exon 30.0%
! CCAAGATTTTTGTGATTCAA+GGG - chr3_1:82827990-82828009 None:intergenic 30.0%
CCTTGAATCACAAAAATCTT+GGG + chr3_1:82827988-82828007 Msa0380850:CDS 30.0%
! TTAGGTGTTATCTATGAAAG+AGG + chr3_1:82828046-82828065 Msa0380850:CDS 30.0%
TCATTGGTATTTATCATGAC+TGG + chr3_1:82828071-82828090 Msa0380850:CDS 30.0%
! TTTTGAACAATTCCAGTACA+AGG + chr3_1:82828221-82828240 Msa0380850:intron 30.0%
CAAATATATGTACCTTGTAC+TGG - chr3_1:82828236-82828255 None:intergenic 30.0%
TTCAATAACACAAAGTTAGC+TGG - chr3_1:82828620-82828639 None:intergenic 30.0%
! GTGTTATTGAATGCCTAATA+TGG + chr3_1:82828629-82828648 Msa0380850:intron 30.0%
ATTATGCAACTCACCATATT+AGG - chr3_1:82828645-82828664 None:intergenic 30.0%
!!! CAAAATGGTTTATTTTGGCT+TGG + chr3_1:82828728-82828747 Msa0380850:intron 30.0%
AATTTGGATGCTTAATTACC+AGG + chr3_1:82828766-82828785 Msa0380850:intron 30.0%
!! CAATTTGCAATCATTTTTCC+TGG - chr3_1:82828787-82828806 None:intergenic 30.0%
GGAAAAATGATTGCAAATTG+AGG + chr3_1:82828787-82828806 Msa0380850:intron 30.0%
TGCAAATTGAGGCTTATATA+TGG + chr3_1:82828798-82828817 Msa0380850:CDS 30.0%
!!! GTTTTAAGGTAAACTACCAT+TGG + chr3_1:82828947-82828966 Msa0380850:intron 30.0%
!!! TTTTCTTCATTTTTCAGGCT+TGG + chr3_1:82829019-82829038 Msa0380850:intron 30.0%
ATTAAGATGCTTAAGTGGTT+TGG - chr3_1:82829524-82829543 None:intergenic 30.0%
!!! ATCACTTCTTTTTTGCTCAT+TGG + chr3_1:82829638-82829657 Msa0380850:intron 30.0%
! CATTATAGCTTTTGGATCTA+AGG - chr3_1:82829852-82829871 None:intergenic 30.0%
CTTAGATCCAAAAGCTATAA+TGG + chr3_1:82829850-82829869 Msa0380850:three_prime_UTR 30.0%
! CAAAAACCCATTATAGCTTT+TGG - chr3_1:82829860-82829879 None:intergenic 30.0%
!!! CAAAAGCTATAATGGGTTTT+TGG + chr3_1:82829858-82829877 Msa0380850:three_prime_UTR 30.0%
! GGAATGATAATGACATTGAA+GGG + chr3_1:82829880-82829899 Msa0380850:three_prime_UTR 30.0%
GAGAGAACGTAACAAATTGA+CGG + chr3_1:82822665-82822684 Msa0380850:five_prime_UTR 35.0%
AGAGAACGTAACAAATTGAC+GGG + chr3_1:82822666-82822685 Msa0380850:five_prime_UTR 35.0%
AAACGGTGGAACAAAATTGA+CGG + chr3_1:82822704-82822723 Msa0380850:five_prime_UTR 35.0%
TTCCACAAAGAAAATTTCGG+CGG + chr3_1:82822803-82822822 Msa0380850:five_prime_UTR 35.0%
!! AGTTTTGTGCAGAAATGAAG+AGG + chr3_1:82823172-82823191 Msa0380850:intron 35.0%
! GTTTTGTGCAGAAATGAAGA+GGG + chr3_1:82823173-82823192 Msa0380850:intron 35.0%
! TTTTGTGCAGAAATGAAGAG+GGG + chr3_1:82823174-82823193 Msa0380850:intron 35.0%
!!! TCATGTGTATTTTGGTGAGT+TGG + chr3_1:82823556-82823575 Msa0380850:intron 35.0%
GAACAAATCACATACCTTCA+TGG - chr3_1:82824162-82824181 None:intergenic 35.0%
TAATGTTAGCAGGTACCAAA+GGG + chr3_1:82824375-82824394 Msa0380850:intron 35.0%
AAAAACACCGCAAACTCAAT+GGG - chr3_1:82824750-82824769 None:intergenic 35.0%
AGATGCCATCATCTTTAACA+GGG + chr3_1:82824830-82824849 Msa0380850:five_prime_UTR 35.0%
AAAGTCCCTGTTAAAGATGA+TGG - chr3_1:82824838-82824857 None:intergenic 35.0%
!! ATAAGGTTGGTGAAGCAATA+TGG + chr3_1:82825360-82825379 Msa0380850:five_prime_UTR 35.0%
CAAATAGCTGAGAAGTTAGA+AGG + chr3_1:82825399-82825418 Msa0380850:five_prime_UTR 35.0%
! TGACTGAGGATCAAATTTTC+AGG + chr3_1:82825504-82825523 Msa0380850:five_prime_UTR 35.0%
ATATCCAAACACAGTCAAAG+TGG - chr3_1:82825538-82825557 None:intergenic 35.0%
CAAACAATCCAATCCAAACA+TGG + chr3_1:82825789-82825808 Msa0380850:intron 35.0%
! CTACTTATATTTAAGGTCGG+AGG - chr3_1:82826373-82826392 None:intergenic 35.0%
! TCAATTGCTTAATGGATGTC+AGG + chr3_1:82826562-82826581 Msa0380850:intron 35.0%
ACTACATCCTCGAGTTTAAT+CGG - chr3_1:82826611-82826630 None:intergenic 35.0%
! AAACTCGAGGATGTAGTTTT+AGG + chr3_1:82826614-82826633 Msa0380850:five_prime_UTR 35.0%
TGATGACAAAACTGTACCAA+AGG + chr3_1:82826685-82826704 Msa0380850:five_prime_UTR 35.0%
ATAGATAATGCAAGATGGGA+TGG + chr3_1:82826746-82826765 Msa0380850:five_prime_UTR 35.0%
TAGATAATGCAAGATGGGAT+GGG + chr3_1:82826747-82826766 Msa0380850:five_prime_UTR 35.0%
!!! TGGGGTACCTTTTTTTATGA+AGG + chr3_1:82826766-82826785 Msa0380850:five_prime_UTR 35.0%
!!! GTACCTTTTTTTATGAAGGC+TGG + chr3_1:82826770-82826789 Msa0380850:five_prime_UTR 35.0%
TTCCCAGCCTTCATAAAAAA+AGG - chr3_1:82826776-82826795 None:intergenic 35.0%
TATTCCTTTCACTTACCTCT+TGG - chr3_1:82826810-82826829 None:intergenic 35.0%
TAGCAGATCGTGAAAATTTG+CGG + chr3_1:82826851-82826870 Msa0380850:intron 35.0%
TCGCCAATATAGTCAATAGT+AGG + chr3_1:82826955-82826974 Msa0380850:intron 35.0%
!! TTGTGACATTGGTTTGATGT+TGG - chr3_1:82826992-82827011 None:intergenic 35.0%
GATCTCAGCTTAAAAGAGAT+GGG - chr3_1:82827297-82827316 None:intergenic 35.0%
TGATCTCAGCTTAAAAGAGA+TGG - chr3_1:82827298-82827317 None:intergenic 35.0%
! TCTCTTTTAAGCTGAGATCA+AGG + chr3_1:82827298-82827317 Msa0380850:intron 35.0%
! CTCTTTTAAGCTGAGATCAA+GGG + chr3_1:82827299-82827318 Msa0380850:intron 35.0%
ATGCCAGAATAAGTGTTTCT+TGG + chr3_1:82827341-82827360 Msa0380850:intron 35.0%
GACGTGTGTAAAAATGATCA+TGG - chr3_1:82827547-82827566 None:intergenic 35.0%
TGGTAGGTACAAAAAAATGG+AGG + chr3_1:82827704-82827723 Msa0380850:intron 35.0%
AACAGTTGAATCGTATCAAG+AGG + chr3_1:82827847-82827866 Msa0380850:five_prime_UTR 35.0%
CCCTTGAATCACAAAAATCT+TGG + chr3_1:82827987-82828006 Msa0380850:CDS 35.0%
! CCCAAGATTTTTGTGATTCA+AGG - chr3_1:82827991-82828010 None:intergenic 35.0%
AATCACAAAAATCTTGGGTG+AGG + chr3_1:82827993-82828012 Msa0380850:CDS 35.0%
!! TAAAGTGTTGTCAGCAATTG+TGG - chr3_1:82828029-82828048 None:intergenic 35.0%
ACAATTGCTGACAACACTTT+AGG + chr3_1:82828028-82828047 Msa0380850:CDS 35.0%
ATCTATGAAAGAGGTCTCAT+TGG + chr3_1:82828055-82828074 Msa0380850:CDS 35.0%
!!! GATTGCCTCTTTTTGAAATG+TGG + chr3_1:82828427-82828446 Msa0380850:intron 35.0%
! ACATTTTGCTAAACCTTGAG+AGG + chr3_1:82828508-82828527 Msa0380850:intron 35.0%
GCTGATTACGATAGAGAATT+TGG + chr3_1:82828750-82828769 Msa0380850:intron 35.0%
!!! GTACATGAGTCTTATTTTGC+AGG + chr3_1:82828834-82828853 Msa0380850:CDS 35.0%
!!! ATGAGTCTTATTTTGCAGGT+AGG + chr3_1:82828838-82828857 Msa0380850:intron 35.0%
!! AAAGCAAGAGAAAGGTATTC+AGG - chr3_1:82828884-82828903 None:intergenic 35.0%
TTTACTGCCAATTTCTTTGC+AGG + chr3_1:82828902-82828921 Msa0380850:intron 35.0%
! AAATGGCACTTGGAGTTTTA+AGG + chr3_1:82828933-82828952 Msa0380850:CDS 35.0%
AAGGTAAACTACCATTGGAT+TGG + chr3_1:82828952-82828971 Msa0380850:intron 35.0%
! CATGCATTTTACCAATCCAA+TGG - chr3_1:82828966-82828985 None:intergenic 35.0%
!! CATTGGATTGGTAAAATGCA+TGG + chr3_1:82828964-82828983 Msa0380850:intron 35.0%
! TGAGTGTTATTAAAGGGTGT+TGG + chr3_1:82829249-82829268 Msa0380850:intron 35.0%
!! TTATTAAAGGGTGTTGGTCT+TGG + chr3_1:82829255-82829274 Msa0380850:intron 35.0%
! CAAATGAATGGTGGAATGAT+TGG + chr3_1:82829308-82829327 Msa0380850:intron 35.0%
AGCCTATATTTGACACTTCT+AGG + chr3_1:82829569-82829588 Msa0380850:intron 35.0%
!! CTCCTAGAAGTGTCAAATAT+AGG - chr3_1:82829574-82829593 None:intergenic 35.0%
! GGGAATGATAATGACATTGA+AGG + chr3_1:82829879-82829898 Msa0380850:three_prime_UTR 35.0%
! ATGATAATGACATTGAAGGG+AGG + chr3_1:82829883-82829902 Msa0380850:three_prime_UTR 35.0%
!! AAGTAGTGATAATGGCAATG+AGG + chr3_1:82829938-82829957 Msa0380850:three_prime_UTR 35.0%
!! AGTAGTGATAATGGCAATGA+GGG + chr3_1:82829939-82829958 Msa0380850:three_prime_UTR 35.0%
GAGAACGTAACAAATTGACG+GGG + chr3_1:82822667-82822686 Msa0380850:five_prime_UTR 40.0%
AACGGTGGAACAAAATTGAC+GGG + chr3_1:82822705-82822724 Msa0380850:five_prime_UTR 40.0%
ACGGGGAGAAATGAAATTGA+CGG + chr3_1:82822723-82822742 Msa0380850:five_prime_UTR 40.0%
GAAATTGACGGGGAAAGAAA+AGG + chr3_1:82822735-82822754 Msa0380850:five_prime_UTR 40.0%
GGAAAGAAAAGGAGGAATCA+AGG + chr3_1:82822746-82822765 Msa0380850:five_prime_UTR 40.0%
GAAAAGGAGGAATCAAGGAA+CGG + chr3_1:82822751-82822770 Msa0380850:five_prime_UTR 40.0%
TCTGAGGATTGTGGTAATCA+TGG + chr3_1:82822893-82822912 Msa0380850:five_prime_UTR 40.0%
GAGGGGATACTTTGATGTTA+TGG + chr3_1:82823191-82823210 Msa0380850:five_prime_UTR 40.0%
GTTCAAGCAACATGGTTGTA+AGG + chr3_1:82823218-82823237 Msa0380850:five_prime_UTR 40.0%
TTGGTGCATCAAAATGCTTC+CGG + chr3_1:82823396-82823415 Msa0380850:intron 40.0%
TCAAAATGCTTCCGGATTGA+TGG + chr3_1:82823404-82823423 Msa0380850:intron 40.0%
TTGCTGTATCGAAATGCTTC+AGG + chr3_1:82823668-82823687 Msa0380850:intron 40.0%
! TCGAAATGCTTCAGGTTTGA+TGG + chr3_1:82823676-82823695 Msa0380850:intron 40.0%
GTTACTCTGTTGAACTCCAA+GGG - chr3_1:82823888-82823907 None:intergenic 40.0%
TGTTACTCTGTTGAACTCCA+AGG - chr3_1:82823889-82823908 None:intergenic 40.0%
CATCAATTGGAACAGCAGTT+AGG + chr3_1:82823924-82823943 Msa0380850:five_prime_UTR 40.0%
AATTGGAACAGCAGTTAGGA+AGG + chr3_1:82823928-82823947 Msa0380850:five_prime_UTR 40.0%
! TACACTGCCACTTACTATTG+CGG + chr3_1:82824023-82824042 Msa0380850:five_prime_UTR 40.0%
CTAATGTTAGCAGGTACCAA+AGG + chr3_1:82824374-82824393 Msa0380850:intron 40.0%
AATGTTAGCAGGTACCAAAG+GGG + chr3_1:82824376-82824395 Msa0380850:intron 40.0%
AACACAATCATCAGTCTCCT+TGG - chr3_1:82824503-82824522 None:intergenic 40.0%
TCTCAAGCTCATTGTTGCAA+TGG + chr3_1:82824522-82824541 Msa0380850:five_prime_UTR 40.0%
TAAATGATACCGCACTGAAG+AGG + chr3_1:82824637-82824656 Msa0380850:intron 40.0%
CAAAAACACCGCAAACTCAA+TGG - chr3_1:82824751-82824770 None:intergenic 40.0%
! CATTGAGTTTGCGGTGTTTT+TGG + chr3_1:82824749-82824768 Msa0380850:five_prime_UTR 40.0%
TGATTGGAATGGTAGCTAAG+TGG - chr3_1:82824776-82824795 None:intergenic 40.0%
GCATGTTCATGTGATTGGAA+TGG - chr3_1:82824787-82824806 None:intergenic 40.0%
GAGATGCCATCATCTTTAAC+AGG + chr3_1:82824829-82824848 Msa0380850:five_prime_UTR 40.0%
TCTTTAACAGGGACTTTGCT+TGG + chr3_1:82824841-82824860 Msa0380850:five_prime_UTR 40.0%
CTTTAACAGGGACTTTGCTT+GGG + chr3_1:82824842-82824861 Msa0380850:five_prime_UTR 40.0%
TAGCTGAGAAGTTAGAAGGA+AGG + chr3_1:82825403-82825422 Msa0380850:five_prime_UTR 40.0%
AGCTGAGAAGTTAGAAGGAA+GGG + chr3_1:82825404-82825423 Msa0380850:five_prime_UTR 40.0%
TGATCTTGTTAAAGCAGCTG+AGG - chr3_1:82825471-82825490 None:intergenic 40.0%
ATTCAAGCAGTATCTGACTG+AGG + chr3_1:82825490-82825509 Msa0380850:five_prime_UTR 40.0%
CTAACCACTTTGACTGTGTT+TGG + chr3_1:82825531-82825550 Msa0380850:intron 40.0%
!! AGATTGTTTGAAAGCGCTCA+TGG - chr3_1:82825741-82825760 None:intergenic 40.0%
!! CTTAGAAGTGTTTATGGCAG+TGG + chr3_1:82825759-82825778 Msa0380850:intron 40.0%
TACAGGATCGATCACTATCT+TGG + chr3_1:82825871-82825890 Msa0380850:intron 40.0%
CTATCTTGGAAAAGAGCTTG+TGG + chr3_1:82825885-82825904 Msa0380850:five_prime_UTR 40.0%
! TTTTTGAACCTTTGTGGTCG+AGG + chr3_1:82825941-82825960 Msa0380850:five_prime_UTR 40.0%
!! TCAGAAGATTTTGGTACCGA+AGG + chr3_1:82825994-82826013 Msa0380850:five_prime_UTR 40.0%
TAAATGCTGCAAAGGAAGAG+AGG - chr3_1:82826033-82826052 None:intergenic 40.0%
AATACTAGCCCTCTTTGCAA+TGG + chr3_1:82826202-82826221 Msa0380850:intron 40.0%
AATGGAAACCCCTGTTAGTT+TGG + chr3_1:82826220-82826239 Msa0380850:intron 40.0%
TCGGTTAAATATAAGGCCAG+AGG + chr3_1:82826431-82826450 Msa0380850:intron 40.0%
CTTCTAGCATATACATCCTC+TGG - chr3_1:82826450-82826469 None:intergenic 40.0%
TATGAGACCGATTAAACTCG+AGG + chr3_1:82826601-82826620 Msa0380850:five_prime_UTR 40.0%
CTCTGGTGTGGTTCTTATAT+TGG - chr3_1:82826640-82826659 None:intergenic 40.0%
CAATATAAGAACCACACCAG+AGG + chr3_1:82826638-82826657 Msa0380850:five_prime_UTR 40.0%
! GTTTTGTCATCAATGTAGGC+TGG - chr3_1:82826677-82826696 None:intergenic 40.0%
AGATAATGCAAGATGGGATG+GGG + chr3_1:82826748-82826767 Msa0380850:five_prime_UTR 40.0%
CGTCTTTAGCTATTCTAGCA+GGG - chr3_1:82827818-82827837 None:intergenic 40.0%
ACGTCTTTAGCTATTCTAGC+AGG - chr3_1:82827819-82827838 None:intergenic 40.0%
TGATCGACACCACTAGATAT+CGG + chr3_1:82827921-82827940 Msa0380850:five_prime_UTR 40.0%
!! TATAGGAAGCTGACTTGCAA+GGG - chr3_1:82828148-82828167 None:intergenic 40.0%
CCAGTCCACATTTCAAAAAG+AGG - chr3_1:82828435-82828454 None:intergenic 40.0%
!!! CCTCTTTTTGAAATGTGGAC+TGG + chr3_1:82828432-82828451 Msa0380850:intron 40.0%
!! TGAAATGTGGACTGGAGATT+TGG + chr3_1:82828440-82828459 Msa0380850:intron 40.0%
TGGCAGTAAAAGCAAGAGAA+AGG - chr3_1:82828892-82828911 None:intergenic 40.0%
AGTGACTCCTGCAAAGAAAT+TGG - chr3_1:82828912-82828931 None:intergenic 40.0%
TCTTGTCTCTGTGTATGCTT+TGG + chr3_1:82828988-82829007 Msa0380850:intron 40.0%
CAACAATGGTAGCATGAGAT+AGG - chr3_1:82829060-82829079 None:intergenic 40.0%
CTATCTCATGCTACCATTGT+TGG + chr3_1:82829058-82829077 Msa0380850:CDS 40.0%
!!! GATGTGTCGTTTTCCAACAA+TGG - chr3_1:82829074-82829093 None:intergenic 40.0%
! GACTTGAGAGTATGACATTG+AGG + chr3_1:82829717-82829736 Msa0380850:intron 40.0%
TCATTTGCAGTTGCTACCAA+TGG + chr3_1:82829752-82829771 Msa0380850:intron 40.0%
ACGAAGATGAAATTGGCCAT+TGG - chr3_1:82829771-82829790 None:intergenic 40.0%
GATGCACACGAAGATGAAAT+TGG - chr3_1:82829778-82829797 None:intergenic 40.0%
TAATGACATTGAAGGGAGGA+AGG + chr3_1:82829887-82829906 Msa0380850:three_prime_UTR 40.0%
CATTGGGGAAGTAGTGATAA+TGG + chr3_1:82829930-82829949 Msa0380850:three_prime_UTR 40.0%
!! GTAGTGATAATGGCAATGAG+GGG + chr3_1:82829940-82829959 Msa0380850:three_prime_UTR 40.0%
AACGTAACAAATTGACGGGG+AGG + chr3_1:82822670-82822689 Msa0380850:five_prime_UTR 45.0%
TAACAAATTGACGGGGAGGA+AGG + chr3_1:82822674-82822693 Msa0380850:five_prime_UTR 45.0%
ACGGTGGAACAAAATTGACG+GGG + chr3_1:82822706-82822725 Msa0380850:five_prime_UTR 45.0%
CGGGGAGAAATGAAATTGAC+GGG + chr3_1:82822724-82822743 Msa0380850:five_prime_UTR 45.0%
GGGGAGAAATGAAATTGACG+GGG + chr3_1:82822725-82822744 Msa0380850:five_prime_UTR 45.0%
ATTGACGGGGAAAGAAAAGG+AGG + chr3_1:82822738-82822757 Msa0380850:five_prime_UTR 45.0%
TTGTGGAAGAACAGAGAACG+CGG - chr3_1:82822791-82822810 None:intergenic 45.0%
CACAAAGAAAATTTCGGCGG+CGG + chr3_1:82822806-82822825 Msa0380850:five_prime_UTR 45.0%
ATGGCTGAGTTCAAGCAACA+TGG + chr3_1:82823210-82823229 Msa0380850:five_prime_UTR 45.0%
ACTAAGGACATAGCTACCCT+TGG + chr3_1:82823869-82823888 Msa0380850:five_prime_UTR 45.0%
TCCACACACCTCACATCAAT+TGG + chr3_1:82823911-82823930 Msa0380850:five_prime_UTR 45.0%
TCCAATTGATGTGAGGTGTG+TGG - chr3_1:82823915-82823934 None:intergenic 45.0%
CTGCTGTTCCAATTGATGTG+AGG - chr3_1:82823922-82823941 None:intergenic 45.0%
ACCATTTCAAGCAGCCATGA+AGG + chr3_1:82824145-82824164 Msa0380850:five_prime_UTR 45.0%
ACCTTCATGGCTGCTTGAAA+TGG - chr3_1:82824149-82824168 None:intergenic 45.0%
! AGCAAAGTGTCAGTGCGTAA+TGG + chr3_1:82824418-82824437 Msa0380850:five_prime_UTR 45.0%
! TGCGTAATGGAAGTTGTCAG+TGG + chr3_1:82824431-82824450 Msa0380850:five_prime_UTR 45.0%
TCCTCTTCCCATTGAGTTTG+CGG + chr3_1:82824740-82824759 Msa0380850:five_prime_UTR 45.0%
GAACATGCATTAACCCAGCT+AGG + chr3_1:82824799-82824818 Msa0380850:five_prime_UTR 45.0%
ATTAACCCAGCTAGGAGTCT+TGG + chr3_1:82824807-82824826 Msa0380850:five_prime_UTR 45.0%
GAGAAGTTAGAAGGAAGGGT+TGG + chr3_1:82825408-82825427 Msa0380850:five_prime_UTR 45.0%
ATGTATTGCCTCGACCACAA+AGG - chr3_1:82825952-82825971 None:intergenic 45.0%
AGGGGTTTCCATTGCAAAGA+GGG - chr3_1:82826213-82826232 None:intergenic 45.0%
CTCTGCATCCAAACTAACAG+GGG - chr3_1:82826231-82826250 None:intergenic 45.0%
CCTCTGCATCCAAACTAACA+GGG - chr3_1:82826232-82826251 None:intergenic 45.0%
TCCTCTGCATCCAAACTAAC+AGG - chr3_1:82826233-82826252 None:intergenic 45.0%
GACTCAGAGACTCATGGTTA+TGG + chr3_1:82826494-82826513 Msa0380850:intron 45.0%
! GCTTAATGGATGTCAGGTCA+AGG + chr3_1:82826568-82826587 Msa0380850:intron 45.0%
TATAAGAACCACACCAGAGG+AGG + chr3_1:82826641-82826660 Msa0380850:five_prime_UTR 45.0%
!! GGAAAGCATTACACACCAAG+AGG + chr3_1:82826792-82826811 Msa0380850:five_prime_UTR 45.0%
CACACCAAGAGGTAAGTGAA+AGG + chr3_1:82826803-82826822 Msa0380850:intron 45.0%
GAAAGAGCGATATCGCTATC+TGG + chr3_1:82827441-82827460 Msa0380850:intron 45.0%
ACACACGTCATTCAAACACC+TGG + chr3_1:82827558-82827577 Msa0380850:intron 45.0%
ATGGACATGAATGCAGGCTT+TGG + chr3_1:82827950-82827969 Msa0380850:CDS 45.0%
!! GTATAGGAAGCTGACTTGCA+AGG - chr3_1:82828149-82828168 None:intergenic 45.0%
CTTTGCAGGAGTCACTCAAA+TGG + chr3_1:82828916-82828935 Msa0380850:intron 45.0%
!! AAAAAATTAATTATACAAAA+TGG + chr3_1:82828713-82828732 Msa0380850:intron 5.0%
GGGAGGAAGGAGAAAGGAAA+CGG + chr3_1:82822687-82822706 Msa0380850:five_prime_UTR 50.0%
AGGAAGGAGAAAGGAAACGG+TGG + chr3_1:82822690-82822709 Msa0380850:five_prime_UTR 50.0%
! CGCCGCCGAAATTTTCTTTG+TGG - chr3_1:82822808-82822827 None:intergenic 50.0%
AAAGAAAATTTCGGCGGCGG+TGG + chr3_1:82822809-82822828 Msa0380850:five_prime_UTR 50.0%
!! GGTGGTGGAGAAGAGAATCT+CGG + chr3_1:82822827-82822846 Msa0380850:five_prime_UTR 50.0%
TCACAACTCGATGTCTCTCG+TGG + chr3_1:82824097-82824116 Msa0380850:five_prime_UTR 50.0%
TTAGCAGGTACCAAAGGGGT+GGG + chr3_1:82824380-82824399 Msa0380850:intron 50.0%
TTGCAATTGTCCCACCCCTT+TGG - chr3_1:82824393-82824412 None:intergenic 50.0%
ACCGCAAACTCAATGGGAAG+AGG - chr3_1:82824744-82824763 None:intergenic 50.0%
CATCTCCAAGACTCCTAGCT+GGG - chr3_1:82824815-82824834 None:intergenic 50.0%
!! GATTTTGGTACCGAAGGACG+TGG + chr3_1:82826000-82826019 Msa0380850:five_prime_UTR 50.0%
CAGGGGTTTCCATTGCAAAG+AGG - chr3_1:82826214-82826233 None:intergenic 50.0%
! CCCTGTTAGTTTGGATGCAG+AGG + chr3_1:82826229-82826248 Msa0380850:intron 50.0%
TCTCTGAGTCGTAGCTCAAG+TGG - chr3_1:82826484-82826503 None:intergenic 50.0%
AGCTACGACTCAGAGACTCA+TGG + chr3_1:82826488-82826507 Msa0380850:intron 50.0%
TGGATATGCAACACCTCCTC+TGG - chr3_1:82826657-82826676 None:intergenic 50.0%
GTCTGGGTTAAGCTGTCCTT+TGG - chr3_1:82826704-82826723 None:intergenic 50.0%
CTTAACCCAGACATTTGCCG+CGG + chr3_1:82826712-82826731 Msa0380850:five_prime_UTR 50.0%
AGAGCGATATCGCTATCTGG+AGG + chr3_1:82827444-82827463 Msa0380850:intron 50.0%
CTGCAAAATCCCTATCCCTG+AGG + chr3_1:82827728-82827747 Msa0380850:five_prime_UTR 50.0%
! TGCTGGTTACCTCAGGGATA+GGG - chr3_1:82827740-82827759 None:intergenic 50.0%
! CACTTCTGCTGGTTACCTCA+GGG - chr3_1:82827746-82827765 None:intergenic 50.0%
! TCACTTCTGCTGGTTACCTC+AGG - chr3_1:82827747-82827766 None:intergenic 50.0%
ACCAGCAGAAGTGAAGTTGC+TGG + chr3_1:82827753-82827772 Msa0380850:five_prime_UTR 50.0%
TCCAGCAACTTCACTTCTGC+TGG - chr3_1:82827757-82827776 None:intergenic 50.0%
AGCAGAAGTGAAGTTGCTGG+AGG + chr3_1:82827756-82827775 Msa0380850:five_prime_UTR 50.0%
! GACATGAATGCAGGCTTTGG+AGG + chr3_1:82827953-82827972 Msa0380850:CDS 50.0%
GGAGTCACTCAAATGGCACT+TGG + chr3_1:82828923-82828942 Msa0380850:intron 50.0%
!! GGGTGTTGGTCTTGGTTTAG+TGG + chr3_1:82829263-82829282 Msa0380850:intron 50.0%
TAATGGCAATGAGGGGTCGA+AGG + chr3_1:82829947-82829966 Msa0380850:three_prime_UTR 50.0%
TTGACGGGGAGGAAGGAGAA+AGG + chr3_1:82822681-82822700 Msa0380850:five_prime_UTR 55.0%
GGTGGAGAAGAGAATCTCGG+CGG + chr3_1:82822830-82822849 Msa0380850:five_prime_UTR 55.0%
! GAGTTGAAGAAGCGCGTCTG+AGG + chr3_1:82822877-82822896 Msa0380850:five_prime_UTR 55.0%
! AGAAGCGCGTCTGAGGATTG+TGG + chr3_1:82822884-82822903 Msa0380850:five_prime_UTR 55.0%
GTTAGCAGGTACCAAAGGGG+TGG + chr3_1:82824379-82824398 Msa0380850:intron 55.0%
GCATCTCCAAGACTCCTAGC+TGG - chr3_1:82824816-82824835 None:intergenic 55.0%
GCAAGCAGTGTAGAGAGCGA+TGG + chr3_1:82825430-82825449 Msa0380850:five_prime_UTR 55.0%
AGGTTACCTGCCACGTCCTT+CGG - chr3_1:82826013-82826032 None:intergenic 55.0%
ATGCAACACCTCCTCTGGTG+TGG - chr3_1:82826652-82826671 None:intergenic 55.0%
ATCTATGAAGAGGGCAGCCG+CGG - chr3_1:82826732-82826751 None:intergenic 55.0%
! CTGCTGGTTACCTCAGGGAT+AGG - chr3_1:82827741-82827760 None:intergenic 55.0%
GGGACTGCAAACAACCTAGC+AGG - chr3_1:82827798-82827817 None:intergenic 55.0%
TGCTGCCAATGCAGCTGCAT+TGG + chr3_1:82829913-82829932 Msa0380850:three_prime_UTR 55.0%
GCTGCCAATGCAGCTGCATT+GGG + chr3_1:82829914-82829933 Msa0380850:three_prime_UTR 55.0%
CTGCCAATGCAGCTGCATTG+GGG + chr3_1:82829915-82829934 Msa0380850:three_prime_UTR 55.0%
CTTCCCCAATGCAGCTGCAT+TGG - chr3_1:82829921-82829940 None:intergenic 55.0%
GAAAATTTCGGCGGCGGTGG+TGG + chr3_1:82822812-82822831 Msa0380850:five_prime_UTR 60.0%
GGAGAAGAGAATCTCGGCGG+CGG + chr3_1:82822833-82822852 Msa0380850:five_prime_UTR 60.0%
TACCGCACTGAAGAGGCTCG+AGG + chr3_1:82824644-82824663 Msa0380850:intron 60.0%
CTCCTCGAGCCTCTTCAGTG+CGG - chr3_1:82824649-82824668 None:intergenic 60.0%
! TTGGTACCGAAGGACGTGGC+AGG + chr3_1:82826004-82826023 Msa0380850:five_prime_UTR 60.0%
AAGAGAATCTCGGCGGCGGC+AGG + chr3_1:82822837-82822856 Msa0380850:five_prime_UTR 65.0%
AGAGAATCTCGGCGGCGGCA+GGG + chr3_1:82822838-82822857 Msa0380850:five_prime_UTR 65.0%
GGCAGCCGCGGCAAATGTCT+GGG - chr3_1:82826720-82826739 None:intergenic 65.0%
GGGCAGCCGCGGCAAATGTC+TGG - chr3_1:82826721-82826740 None:intergenic 70.0%
CGGCGGCGGCAGGGATTGTG+CGG + chr3_1:82822847-82822866 Msa0380850:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 82822662 82830040 82822662 ID=Msa0380850;Name=Msa0380850
chr3_1 mRNA 82822662 82830040 82822662 ID=Msa0380850-mRNA-1;Parent=Msa0380850;Name=Msa0380850-mRNA-1;_AED=0.24;_eAED=0.24;_QI=1864|0.83|0.84|0.92|0.41|0.30|13|299|103
chr3_1 exon 82822662 82823037 82822662 ID=Msa0380850-mRNA-1:exon:21172;Parent=Msa0380850-mRNA-1
chr3_1 exon 82823184 82823239 82823184 ID=Msa0380850-mRNA-1:exon:21173;Parent=Msa0380850-mRNA-1
chr3_1 exon 82823826 82824166 82823826 ID=Msa0380850-mRNA-1:exon:21174;Parent=Msa0380850-mRNA-1
chr3_1 exon 82824387 82824543 82824387 ID=Msa0380850-mRNA-1:exon:21175;Parent=Msa0380850-mRNA-1
chr3_1 exon 82824732 82824872 82824732 ID=Msa0380850-mRNA-1:exon:21176;Parent=Msa0380850-mRNA-1
chr3_1 exon 82825353 82825525 82825353 ID=Msa0380850-mRNA-1:exon:21177;Parent=Msa0380850-mRNA-1
chr3_1 exon 82825876 82826025 82825876 ID=Msa0380850-mRNA-1:exon:21178;Parent=Msa0380850-mRNA-1
chr3_1 exon 82826584 82826813 82826584 ID=Msa0380850-mRNA-1:exon:21179;Parent=Msa0380850-mRNA-1
chr3_1 exon 82827710 82828092 82827710 ID=Msa0380850-mRNA-1:exon:21180;Parent=Msa0380850-mRNA-1
chr3_1 exon 82828788 82828855 82828788 ID=Msa0380850-mRNA-1:exon:21181;Parent=Msa0380850-mRNA-1
chr3_1 exon 82828924 82828954 82828924 ID=Msa0380850-mRNA-1:exon:21182;Parent=Msa0380850-mRNA-1
chr3_1 exon 82829036 82829125 82829036 ID=Msa0380850-mRNA-1:exon:21183;Parent=Msa0380850-mRNA-1
chr3_1 exon 82829762 82830040 82829762 ID=Msa0380850-mRNA-1:exon:21184;Parent=Msa0380850-mRNA-1
chr3_1 five_prime_UTR 82822662 82823037 82822662 ID=Msa0380850-mRNA-1:five_prime_utr;Parent=Msa0380850-mRNA-1
chr3_1 five_prime_UTR 82823184 82823239 82823184 ID=Msa0380850-mRNA-1:five_prime_utr;Parent=Msa0380850-mRNA-1
chr3_1 five_prime_UTR 82823826 82824166 82823826 ID=Msa0380850-mRNA-1:five_prime_utr;Parent=Msa0380850-mRNA-1
chr3_1 five_prime_UTR 82824387 82824543 82824387 ID=Msa0380850-mRNA-1:five_prime_utr;Parent=Msa0380850-mRNA-1
chr3_1 five_prime_UTR 82824732 82824872 82824732 ID=Msa0380850-mRNA-1:five_prime_utr;Parent=Msa0380850-mRNA-1
chr3_1 five_prime_UTR 82825353 82825525 82825353 ID=Msa0380850-mRNA-1:five_prime_utr;Parent=Msa0380850-mRNA-1
chr3_1 five_prime_UTR 82825876 82826025 82825876 ID=Msa0380850-mRNA-1:five_prime_utr;Parent=Msa0380850-mRNA-1
chr3_1 five_prime_UTR 82826584 82826813 82826584 ID=Msa0380850-mRNA-1:five_prime_utr;Parent=Msa0380850-mRNA-1
chr3_1 five_prime_UTR 82827710 82827949 82827710 ID=Msa0380850-mRNA-1:five_prime_utr;Parent=Msa0380850-mRNA-1
chr3_1 CDS 82827950 82828092 82827950 ID=Msa0380850-mRNA-1:cds;Parent=Msa0380850-mRNA-1
chr3_1 CDS 82828788 82828855 82828788 ID=Msa0380850-mRNA-1:cds;Parent=Msa0380850-mRNA-1
chr3_1 CDS 82828924 82828954 82828924 ID=Msa0380850-mRNA-1:cds;Parent=Msa0380850-mRNA-1
chr3_1 CDS 82829036 82829105 82829036 ID=Msa0380850-mRNA-1:cds;Parent=Msa0380850-mRNA-1
chr3_1 three_prime_UTR 82829106 82829125 82829106 ID=Msa0380850-mRNA-1:three_prime_utr;Parent=Msa0380850-mRNA-1
chr3_1 three_prime_UTR 82829762 82830040 82829762 ID=Msa0380850-mRNA-1:three_prime_utr;Parent=Msa0380850-mRNA-1
Gene Sequence

>Msa0380850

ATGGACATGAATGCAGGCTTTGGAGGATTTGCAGCTGCCCTTGAATCACAAAAATCTTGGGTGAGGAATGATGTGTCCACAATTGCTGACAACACTTTAGGTGTTATCTATGAAAGAGGTCTCATTGGTATTTATCATGACTGGAAAAATGATTGCAAATTGAGGCTTATATATGGTTTTTCTCTGAATGTACATGAGTCTTATTTTGCAGGAGTCACTCAAATGGCACTTGGAGTTTTAAGGCTTGGTTTCTTGATTGACTTCCTATCTCATGCTACCATTGTTGGAAAACGACACATCGAAATAATATAA
Protein sequence

>Msa0380850

MDMNAGFGGFAAALESQKSWVRNDVSTIADNTLGVIYERGLIGIYHDWKNDCKLRLIYGFSLNVHESYFAGVTQMALGVLRLGFLIDFLSHATIVGKRHIEII*