Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538600 | XP_003605354.2 | 95.677 | 347 | 11 | 2 | 1 | 344 | 55 | 400 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538600 | sp|Q6R567|RMA1_CAPAN | 42.857 | 112 | 55 | 2 | 60 | 162 | 21 | 132 | 1.61e-22 | 99.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538600 | G7JJK5 | 95.677 | 347 | 11 | 2 | 1 | 344 | 55 | 400 | 0.0 | 650 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002230 | Msa0538600 | 0.840235 | 9.822297e-58 | -8.615850e-47 |
| Msa0002240 | Msa0538600 | 0.805522 | 1.281868e-49 | -8.615850e-47 |
| Msa0006070 | Msa0538600 | 0.829325 | 5.483351e-55 | -8.615850e-47 |
| Msa0006110 | Msa0538600 | 0.856872 | 2.398317e-62 | -8.615850e-47 |
| Msa0006390 | Msa0538600 | 0.817178 | 3.772936e-52 | -8.615850e-47 |
| Msa0007440 | Msa0538600 | 0.805551 | 1.264108e-49 | -8.615850e-47 |
| Msa0009420 | Msa0538600 | 0.804595 | 2.003451e-49 | -8.615850e-47 |
| Msa0011170 | Msa0538600 | 0.832854 | 7.453079e-56 | -8.615850e-47 |
| Msa0014710 | Msa0538600 | 0.838830 | 2.278146e-57 | -8.615850e-47 |
| Msa0026910 | Msa0538600 | 0.801347 | 9.397162e-49 | -8.615850e-47 |
| Msa0036140 | Msa0538600 | 0.834561 | 2.791167e-56 | -8.615850e-47 |
| Msa0036920 | Msa0538600 | 0.801944 | 7.088326e-49 | -8.615850e-47 |
| Msa0068740 | Msa0538600 | -0.826061 | 3.335206e-54 | -8.615850e-47 |
| Msa0075880 | Msa0538600 | 0.831327 | 1.777957e-55 | -8.615850e-47 |
| Msa0079070 | Msa0538600 | 0.818541 | 1.857078e-52 | -8.615850e-47 |
| Msa0090100 | Msa0538600 | 0.808615 | 2.838914e-50 | -8.615850e-47 |
| Msa0095560 | Msa0538600 | 0.811663 | 6.255541e-51 | -8.615850e-47 |
| Msa0114060 | Msa0538600 | 0.811791 | 5.867494e-51 | -8.615850e-47 |
| Msa0114430 | Msa0538600 | 0.809070 | 2.269409e-50 | -8.615850e-47 |
| Msa0127650 | Msa0538600 | 0.829973 | 3.814283e-55 | -8.615850e-47 |
| Msa0130970 | Msa0538600 | 0.807291 | 5.431349e-50 | -8.615850e-47 |
| Msa0140390 | Msa0538600 | 0.804082 | 2.561866e-49 | -8.615850e-47 |
| Msa0145190 | Msa0538600 | 0.814400 | 1.570708e-51 | -8.615850e-47 |
| Msa0166870 | Msa0538600 | 0.814390 | 1.578991e-51 | -8.615850e-47 |
| Msa0188830 | Msa0538600 | 0.802725 | 4.896323e-49 | -8.615850e-47 |
| Msa0194440 | Msa0538600 | 0.813156 | 2.951834e-51 | -8.615850e-47 |
| Msa0201070 | Msa0538600 | 0.837508 | 4.986710e-57 | -8.615850e-47 |
| Msa0212990 | Msa0538600 | 0.829199 | 5.883289e-55 | -8.615850e-47 |
| Msa0218240 | Msa0538600 | 0.812332 | 4.472120e-51 | -8.615850e-47 |
| Msa0220580 | Msa0538600 | 0.832847 | 7.483116e-56 | -8.615850e-47 |
| Msa0220740 | Msa0538600 | 0.828990 | 6.612406e-55 | -8.615850e-47 |
| Msa0223010 | Msa0538600 | 0.818158 | 2.268163e-52 | -8.615850e-47 |
| Msa0223410 | Msa0538600 | -0.831139 | 1.976962e-55 | -8.615850e-47 |
| Msa0226890 | Msa0538600 | 0.803045 | 4.203917e-49 | -8.615850e-47 |
| Msa0233300 | Msa0538600 | 0.801448 | 8.959647e-49 | -8.615850e-47 |
| Msa0371730 | Msa0538600 | 0.818863 | 1.570009e-52 | -8.615850e-47 |
| Msa0373450 | Msa0538600 | 0.813286 | 2.764488e-51 | -8.615850e-47 |
| Msa0386580 | Msa0538600 | 0.807395 | 5.162743e-50 | -8.615850e-47 |
| Msa0390400 | Msa0538600 | -0.800528 | 1.381558e-48 | -8.615850e-47 |
| Msa0394660 | Msa0538600 | 0.806049 | 9.934730e-50 | -8.615850e-47 |
| Msa0402290 | Msa0538600 | 0.819380 | 1.197242e-52 | -8.615850e-47 |
| Msa0405370 | Msa0538600 | 0.805850 | 1.093983e-49 | -8.615850e-47 |
| Msa0416300 | Msa0538600 | 0.800560 | 1.361147e-48 | -8.615850e-47 |
| Msa0425790 | Msa0538600 | 0.839146 | 1.886973e-57 | -8.615850e-47 |
| Msa0433410 | Msa0538600 | -0.846152 | 2.598974e-59 | -8.615850e-47 |
| Msa0436760 | Msa0538600 | 0.803973 | 2.699049e-49 | -8.615850e-47 |
| Msa0440750 | Msa0538600 | 0.822739 | 2.016463e-53 | -8.615850e-47 |
| Msa0466120 | Msa0538600 | 0.809584 | 1.760106e-50 | -8.615850e-47 |
| Msa0469940 | Msa0538600 | -0.815722 | 7.991070e-52 | -8.615850e-47 |
| Msa0471550 | Msa0538600 | 0.806864 | 6.687738e-50 | -8.615850e-47 |
| Msa0477130 | Msa0538600 | -0.809022 | 2.323597e-50 | -8.615850e-47 |
| Msa0243710 | Msa0538600 | 0.820339 | 7.225832e-53 | -8.615850e-47 |
| Msa0258760 | Msa0538600 | 0.807495 | 4.916118e-50 | -8.615850e-47 |
| Msa0278110 | Msa0538600 | 0.801622 | 8.253854e-49 | -8.615850e-47 |
| Msa0281930 | Msa0538600 | 0.804580 | 2.018256e-49 | -8.615850e-47 |
| Msa0284520 | Msa0538600 | 0.813531 | 2.442189e-51 | -8.615850e-47 |
| Msa0288100 | Msa0538600 | 0.818263 | 2.147958e-52 | -8.615850e-47 |
| Msa0292930 | Msa0538600 | 0.811797 | 5.848409e-51 | -8.615850e-47 |
| Msa0305190 | Msa0538600 | 0.818274 | 2.134742e-52 | -8.615850e-47 |
| Msa0306210 | Msa0538600 | -0.817241 | 3.651882e-52 | -8.615850e-47 |
| Msa0328810 | Msa0538600 | 0.809699 | 1.663166e-50 | -8.615850e-47 |
| Msa0330340 | Msa0538600 | 0.820193 | 7.804965e-53 | -8.615850e-47 |
| Msa0331000 | Msa0538600 | 0.800583 | 1.346597e-48 | -8.615850e-47 |
| Msa0339620 | Msa0538600 | 0.816443 | 5.514825e-52 | -8.615850e-47 |
| Msa0340450 | Msa0538600 | 0.804539 | 2.058033e-49 | -8.615850e-47 |
| Msa0342750 | Msa0538600 | 0.810325 | 1.219237e-50 | -8.615850e-47 |
| Msa0344690 | Msa0538600 | -0.820383 | 7.061934e-53 | -8.615850e-47 |
| Msa0346180 | Msa0538600 | 0.801322 | 9.512420e-49 | -8.615850e-47 |
| Msa0350870 | Msa0538600 | 0.821622 | 3.660768e-53 | -8.615850e-47 |
| Msa0355220 | Msa0538600 | 0.826701 | 2.348577e-54 | -8.615850e-47 |
| Msa0483150 | Msa0538600 | 0.802867 | 4.576752e-49 | -8.615850e-47 |
| Msa0484780 | Msa0538600 | 0.820147 | 7.996224e-53 | -8.615850e-47 |
| Msa0519000 | Msa0538600 | 0.810697 | 1.013094e-50 | -8.615850e-47 |
| Msa0523940 | Msa0538600 | 0.809700 | 1.662514e-50 | -8.615850e-47 |
| Msa0530400 | Msa0538600 | 0.806757 | 7.046027e-50 | -8.615850e-47 |
| Msa0538600 | Msa0542520 | 0.814025 | 1.900246e-51 | -8.615850e-47 |
| Msa0538600 | Msa0562440 | 0.803658 | 3.138958e-49 | -8.615850e-47 |
| Msa0538600 | Msa0579130 | 0.811194 | 7.910508e-51 | -8.615850e-47 |
| Msa0538600 | Msa0585230 | 0.825633 | 4.213339e-54 | -8.615850e-47 |
| Msa0538600 | Msa0598160 | 0.801651 | 8.143087e-49 | -8.615850e-47 |
| Msa0538600 | Msa0602390 | 0.800514 | 1.390980e-48 | -8.615850e-47 |
| Msa0538600 | Msa0651270 | 0.803760 | 2.988697e-49 | -8.615850e-47 |
| Msa0538600 | Msa0652940 | 0.809295 | 2.030726e-50 | -8.615850e-47 |
| Msa0538600 | Msa0657970 | 0.814544 | 1.459914e-51 | -8.615850e-47 |
| Msa0538600 | Msa0663240 | 0.840060 | 1.091496e-57 | -8.615850e-47 |
| Msa0538600 | Msa0663380 | 0.823092 | 1.667951e-53 | -8.615850e-47 |
| Msa0538600 | Msa0665170 | 0.803948 | 2.731564e-49 | -8.615850e-47 |
| Msa0538600 | Msa0672690 | 0.814661 | 1.375080e-51 | -8.615850e-47 |
| Msa0538600 | Msa0673460 | 0.803061 | 4.172135e-49 | -8.615850e-47 |
| Msa0538600 | Msa0681250 | 0.804647 | 1.954327e-49 | -8.615850e-47 |
| Msa0538600 | Msa0681270 | 0.806422 | 8.291105e-50 | -8.615850e-47 |
| Msa0538600 | Msa0688070 | 0.813523 | 2.452334e-51 | -8.615850e-47 |
| Msa0538600 | Msa0688270 | 0.801936 | 7.117925e-49 | -8.615850e-47 |
| Msa0538600 | Msa0688480 | 0.825994 | 3.460481e-54 | -8.615850e-47 |
| Msa0538600 | Msa0692040 | -0.812065 | 5.112650e-51 | -8.615850e-47 |
| Msa0538600 | Msa0703050 | 0.804364 | 2.238494e-49 | -8.615850e-47 |
| Msa0538600 | Msa0711790 | 0.804038 | 2.616907e-49 | -8.615850e-47 |
| Msa0538600 | Msa0731940 | 0.804483 | 2.114346e-49 | -8.615850e-47 |
| Msa0538600 | Msa0739280 | 0.823619 | 1.256685e-53 | -8.615850e-47 |
| Msa0538600 | Msa0740510 | 0.822358 | 2.472735e-53 | -8.615850e-47 |
| Msa0538600 | Msa0756460 | 0.803105 | 4.086143e-49 | -8.615850e-47 |
| Msa0538600 | Msa0760130 | 0.817918 | 2.570143e-52 | -8.615850e-47 |
| Msa0538600 | Msa0761910 | 0.811137 | 8.136511e-51 | -8.615850e-47 |
| Msa0538600 | Msa0766090 | 0.801453 | 8.938380e-49 | -8.615850e-47 |
| Msa0538600 | Msa0766630 | 0.810791 | 9.668079e-51 | -8.615850e-47 |
| Msa0538600 | Msa0768290 | 0.824254 | 8.915494e-54 | -8.615850e-47 |
| Msa0538600 | Msa0768370 | 0.816859 | 4.450099e-52 | -8.615850e-47 |
| Msa0538600 | Msa0775190 | 0.817378 | 3.401789e-52 | -8.615850e-47 |
| Msa0538600 | Msa0777230 | 0.844290 | 8.284793e-59 | -8.615850e-47 |
| Msa0538600 | Msa0794510 | -0.800004 | 1.766544e-48 | -8.615850e-47 |
| Msa0538600 | Msa0802830 | 0.806704 | 7.228972e-50 | -8.615850e-47 |
| Msa0538600 | Msa0810220 | 0.811633 | 6.350224e-51 | -8.615850e-47 |
| Msa0538600 | Msa0820770 | 0.829475 | 5.042335e-55 | -8.615850e-47 |
| Msa0538600 | Msa0820850 | 0.824077 | 9.815201e-54 | -8.615850e-47 |
| Msa0538600 | Msa0824390 | 0.807656 | 4.543909e-50 | -8.615850e-47 |
| Msa0538600 | Msa0828850 | 0.802192 | 6.302714e-49 | -8.615850e-47 |
| Msa0538600 | Msa0832340 | 0.843395 | 1.439064e-58 | -8.615850e-47 |
| Msa0538600 | Msa0835800 | 0.826637 | 2.432482e-54 | -8.615850e-47 |
| Msa0538600 | Msa0844490 | 0.816216 | 6.199794e-52 | -8.615850e-47 |
| Msa0538600 | Msa0845000 | 0.811239 | 7.733644e-51 | -8.615850e-47 |
| Msa0538600 | Msa0861090 | 0.824800 | 6.631168e-54 | -8.615850e-47 |
| Msa0538600 | Msa0861130 | 0.813778 | 2.154015e-51 | -8.615850e-47 |
| Msa0538600 | Msa0861540 | 0.802805 | 4.712268e-49 | -8.615850e-47 |
| Msa0538600 | Msa0876580 | 0.818368 | 2.033529e-52 | -8.615850e-47 |
| Msa0538600 | Msa0888130 | 0.804719 | 1.887474e-49 | -8.615850e-47 |
| Msa0538600 | Msa0893710 | 0.816630 | 5.008003e-52 | -8.615850e-47 |
| Msa0538600 | Msa0893950 | 0.805389 | 1.367127e-49 | -8.615850e-47 |
| Msa0538600 | Msa0899450 | 0.808207 | 3.468518e-50 | -8.615850e-47 |
| Msa0538600 | Msa0925250 | 0.851359 | 9.346126e-61 | -8.615850e-47 |
| Msa0538600 | Msa0925290 | 0.880798 | 4.079880e-70 | -8.615850e-47 |
| Msa0538600 | Msa0927380 | 0.817747 | 2.808491e-52 | -8.615850e-47 |
| Msa0538600 | Msa0933100 | 0.848490 | 5.928691e-60 | -8.615850e-47 |
| Msa0538600 | Msa0933230 | 0.805043 | 1.614761e-49 | -8.615850e-47 |
| Msa0538600 | Msa0964900 | 0.801034 | 1.089155e-48 | -8.615850e-47 |
| Msa0538600 | Msa0966090 | 0.820965 | 5.190746e-53 | -8.615850e-47 |
| Msa0538600 | Msa0967580 | 0.816435 | 5.539477e-52 | -8.615850e-47 |
| Msa0538600 | Msa0969520 | 0.808019 | 3.803773e-50 | -8.615850e-47 |
| Msa0538600 | Msa0974070 | 0.819916 | 9.035108e-53 | -8.615850e-47 |
| Msa0538600 | Msa0976670 | 0.818118 | 2.315547e-52 | -8.615850e-47 |
| Msa0538600 | Msa0998690 | 0.805028 | 1.626752e-49 | -8.615850e-47 |
| Msa0538600 | Msa1000880 | 0.821850 | 3.242750e-53 | -8.615850e-47 |
| Msa0538600 | Msa1014540 | 0.822848 | 1.901804e-53 | -8.615850e-47 |
| Msa0538600 | Msa1021530 | 0.809966 | 1.456841e-50 | -8.615850e-47 |
| Msa0538600 | Msa1038740 | 0.810520 | 1.106386e-50 | -8.615850e-47 |
| Msa0538600 | Msa1042690 | 0.801922 | 7.164880e-49 | -8.615850e-47 |
| Msa0538600 | Msa1043390 | 0.801709 | 7.921807e-49 | -8.615850e-47 |
| Msa0538600 | Msa1054810 | 0.803497 | 3.389575e-49 | -8.615850e-47 |
| Msa0538600 | Msa1075220 | -0.829657 | 4.552499e-55 | -8.615850e-47 |
| Msa0538600 | Msa1075650 | 0.816475 | 5.426328e-52 | -8.615850e-47 |
| Msa0538600 | Msa1081590 | 0.832195 | 1.085808e-55 | -8.615850e-47 |
| Msa0538600 | Msa1082500 | 0.828706 | 7.746125e-55 | -8.615850e-47 |
| Msa0538600 | Msa1085300 | 0.809537 | 1.802089e-50 | -8.615850e-47 |
| Msa0538600 | Msa1088950 | 0.802053 | 6.734132e-49 | -8.615850e-47 |
| Msa0538600 | Msa1090260 | 0.800120 | 1.673091e-48 | -8.615850e-47 |
| Msa0538600 | Msa1104090 | 0.804644 | 1.956380e-49 | -8.615850e-47 |
| Msa0538600 | Msa1114030 | 0.813026 | 3.152842e-51 | -8.615850e-47 |
| Msa0538600 | Msa1117560 | 0.810471 | 1.133802e-50 | -8.615850e-47 |
| Msa0538600 | Msa1121450 | -0.802485 | 5.487250e-49 | -8.615850e-47 |
| Msa0538600 | Msa1121480 | 0.805080 | 1.586155e-49 | -8.615850e-47 |
| Msa0538600 | Msa1121490 | 0.835802 | 1.357458e-56 | -8.615850e-47 |
| Msa0538600 | Msa1124540 | -0.816312 | 5.900161e-52 | -8.615850e-47 |
| Msa0538600 | Msa1132970 | 0.810753 | 9.854332e-51 | -8.615850e-47 |
| Msa0538600 | Msa1137570 | 0.809998 | 1.434408e-50 | -8.615850e-47 |
| Msa0538600 | Msa1139000 | -0.806483 | 8.046323e-50 | -8.615850e-47 |
| Msa0538600 | Msa1154280 | 0.806895 | 6.585474e-50 | -8.615850e-47 |
| Msa0538600 | Msa1162550 | -0.826745 | 2.291913e-54 | -8.615850e-47 |
| Msa0538600 | Msa1171910 | 0.801988 | 6.943249e-49 | -8.615850e-47 |
| Msa0538600 | Msa1183100 | -0.807956 | 3.923748e-50 | -8.615850e-47 |
| Msa0538600 | Msa1186060 | 0.812437 | 4.241336e-51 | -8.615850e-47 |
| Msa0538600 | Msa1202770 | -0.806486 | 8.036485e-50 | -8.615850e-47 |
| Msa0538600 | Msa1224480 | 0.815257 | 1.013991e-51 | -8.615850e-47 |
| Msa0538600 | Msa1228590 | 0.817307 | 3.529013e-52 | -8.615850e-47 |
| Msa0538600 | Msa1233500 | 0.802454 | 5.567947e-49 | -8.615850e-47 |
| Msa0538600 | Msa1233890 | 0.823350 | 1.452197e-53 | -8.615850e-47 |
| Msa0538600 | Msa1273430 | 0.806534 | 7.851204e-50 | -8.615850e-47 |
| Msa0538600 | Msa1277660 | 0.821184 | 4.621766e-53 | -8.615850e-47 |
| Msa0538600 | Msa1281510 | 0.831031 | 2.101518e-55 | -8.615850e-47 |
| Msa0538600 | Msa1284680 | 0.829986 | 3.786531e-55 | -8.615850e-47 |
| Msa0538600 | Msa1291660 | 0.815768 | 7.807259e-52 | -8.615850e-47 |
| Msa0538600 | Msa1305810 | 0.811984 | 5.325389e-51 | -8.615850e-47 |
| Msa0538600 | Msa1306850 | 0.814018 | 1.907714e-51 | -8.615850e-47 |
| Msa0538600 | Msa1318990 | 0.807729 | 4.384314e-50 | -8.615850e-47 |
| Msa0538600 | Msa1325860 | -0.828967 | 6.697976e-55 | -8.615850e-47 |
| Msa0538600 | Msa1353470 | 0.810617 | 1.054478e-50 | -8.615850e-47 |
| Msa0538600 | Msa1359040 | 0.807400 | 5.149713e-50 | -8.615850e-47 |
| Msa0538600 | Msa1367850 | 0.803344 | 3.645450e-49 | -8.615850e-47 |
| Msa0538600 | Msa1373030 | 0.808989 | 2.361217e-50 | -8.615850e-47 |
| Msa0538600 | Msa1374470 | 0.813021 | 3.160745e-51 | -8.615850e-47 |
| Msa0538600 | Msa1390050 | 0.803705 | 3.069216e-49 | -8.615850e-47 |
| Msa0538600 | Msa1392260 | 0.813596 | 2.363259e-51 | -8.615850e-47 |
| Msa0538600 | Msa1397860 | 0.823628 | 1.250265e-53 | -8.615850e-47 |
| Msa0538600 | Msa1403480 | 0.831173 | 1.939985e-55 | -8.615850e-47 |
| Msa0538600 | Msa1407060 | 0.802306 | 5.971274e-49 | -8.615850e-47 |
| Msa0538600 | Msa1411020 | 0.823059 | 1.698020e-53 | -8.615850e-47 |
| Msa0538600 | Msa1419960 | 0.809429 | 1.900951e-50 | -8.615850e-47 |
| Msa0538600 | Msa1420290 | 0.842595 | 2.349011e-58 | -8.615850e-47 |
| Msa0538600 | Msa1420490 | 0.808875 | 2.498595e-50 | -8.615850e-47 |
| Msa0538600 | Msa1423390 | 0.811580 | 6.521362e-51 | -8.615850e-47 |
| Msa0538600 | Msa1424290 | 0.819286 | 1.257949e-52 | -8.615850e-47 |
| Msa0538600 | Msa1424680 | 0.809357 | 1.969532e-50 | -8.615850e-47 |
| Msa0538600 | Msa1427230 | 0.808675 | 2.756432e-50 | -8.615850e-47 |
| Msa0538600 | Msa1434350 | 0.822892 | 1.857131e-53 | -8.615850e-47 |
| Msa0538600 | Msa1436480 | 0.802928 | 4.444931e-49 | -8.615850e-47 |
| Msa0538600 | Msa1439320 | 0.822999 | 1.753448e-53 | -8.615850e-47 |
| Msa0538600 | Msa1440370 | 0.812213 | 4.746463e-51 | -8.615850e-47 |
| Msa0538600 | Msa1440810 | 0.814674 | 1.366278e-51 | -8.615850e-47 |
| Msa0538600 | Msa1443060 | 0.819768 | 9.763756e-53 | -8.615850e-47 |
| Msa0538600 | Msa1451620 | -0.805038 | 1.619174e-49 | -8.615850e-47 |
| Msa0538600 | Msa1453560 | 0.804925 | 1.708959e-49 | -8.615850e-47 |
| Msa0538600 | Msa1460830 | 0.809441 | 1.888945e-50 | -8.615850e-47 |
| Msa0538600 | Msa1462070 | 0.806932 | 6.468900e-50 | -8.615850e-47 |
| Msa0538600 | Msa1464940 | 0.806242 | 9.044736e-50 | -8.615850e-47 |
| Msa0538600 | Msa1466540 | 0.810177 | 1.312043e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538600 | MtrunA17_Chr4g0013301 | 85.014 | 347 | 11 | 3 | 1 | 344 | 55 | 363 | 0.0 | 541 |
| Msa0538600 | MtrunA17_Chr2g0308681 | 51.000 | 200 | 91 | 5 | 8 | 206 | 39 | 232 | 7.54e-53 | 176 |
| Msa0538600 | MtrunA17_Chr7g0258821 | 34.254 | 362 | 186 | 10 | 1 | 326 | 93 | 438 | 2.74e-48 | 171 |
| Msa0538600 | MtrunA17_Chr1g0175641 | 56.818 | 88 | 36 | 2 | 73 | 159 | 71 | 157 | 7.82e-30 | 114 |
| Msa0538600 | MtrunA17_Chr1g0175571 | 52.381 | 105 | 42 | 4 | 63 | 164 | 109 | 208 | 1.16e-28 | 112 |
| Msa0538600 | MtrunA17_Chr1g0175871 | 45.926 | 135 | 48 | 7 | 71 | 185 | 45 | 174 | 1.56e-28 | 111 |
| Msa0538600 | MtrunA17_Chr2g0324291 | 46.667 | 90 | 44 | 1 | 76 | 161 | 28 | 117 | 6.68e-26 | 102 |
| Msa0538600 | MtrunA17_Chr5g0403521 | 45.977 | 87 | 46 | 1 | 78 | 164 | 35 | 120 | 1.03e-23 | 99.0 |
| Msa0538600 | MtrunA17_Chr2g0324281 | 46.988 | 83 | 38 | 1 | 78 | 160 | 18 | 94 | 1.63e-23 | 97.4 |
| Msa0538600 | MtrunA17_Chr1g0154561 | 45.055 | 91 | 48 | 2 | 74 | 164 | 29 | 117 | 2.22e-23 | 98.2 |
| Msa0538600 | MtrunA17_Chr4g0021321 | 45.652 | 92 | 42 | 2 | 78 | 161 | 44 | 135 | 2.34e-22 | 95.5 |
| Msa0538600 | MtrunA17_Chr2g0324261 | 38.462 | 130 | 65 | 4 | 38 | 160 | 8 | 129 | 5.86e-22 | 94.4 |
| Msa0538600 | MtrunA17_Chr8g0360011 | 43.182 | 88 | 44 | 1 | 76 | 157 | 33 | 120 | 6.11e-21 | 91.7 |
| Msa0538600 | MtrunA17_Chr4g0047371 | 38.679 | 106 | 56 | 2 | 71 | 167 | 25 | 130 | 7.68e-21 | 90.1 |
| Msa0538600 | MtrunA17_Chr2g0282171 | 39.091 | 110 | 50 | 3 | 62 | 159 | 11 | 115 | 2.59e-20 | 89.4 |
| Msa0538600 | MtrunA17_Chr4g0047381 | 35.514 | 107 | 59 | 2 | 69 | 165 | 22 | 128 | 6.54e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538600 | AT2G44410.1 | 48.684 | 152 | 67 | 3 | 45 | 191 | 96 | 241 | 1.28e-44 | 160 |
| Msa0538600 | AT3G58030.4 | 50.365 | 137 | 57 | 6 | 59 | 190 | 114 | 244 | 1.08e-35 | 137 |
| Msa0538600 | AT3G58030.2 | 50.365 | 137 | 57 | 6 | 59 | 190 | 114 | 244 | 1.08e-35 | 137 |
| Msa0538600 | AT3G58030.1 | 50.365 | 137 | 57 | 6 | 59 | 190 | 114 | 244 | 1.08e-35 | 137 |
| Msa0538600 | AT3G58030.3 | 50.365 | 137 | 57 | 6 | 59 | 190 | 114 | 244 | 1.08e-35 | 137 |
| Msa0538600 | AT1G74990.1 | 45.794 | 107 | 57 | 1 | 71 | 177 | 10 | 115 | 6.19e-30 | 113 |
| Msa0538600 | AT2G42030.1 | 31.190 | 311 | 171 | 10 | 39 | 319 | 100 | 397 | 2.34e-29 | 119 |
| Msa0538600 | AT1G19310.1 | 48.276 | 87 | 44 | 1 | 78 | 164 | 21 | 106 | 1.91e-24 | 101 |
| Msa0538600 | AT2G23780.3 | 45.977 | 87 | 46 | 1 | 78 | 164 | 26 | 111 | 2.38e-23 | 98.2 |
| Msa0538600 | AT2G23780.2 | 45.977 | 87 | 46 | 1 | 78 | 164 | 26 | 111 | 2.38e-23 | 98.2 |
| Msa0538600 | AT2G23780.1 | 45.977 | 87 | 46 | 1 | 78 | 164 | 26 | 111 | 2.38e-23 | 98.2 |
| Msa0538600 | AT4G28270.1 | 46.000 | 100 | 34 | 3 | 74 | 160 | 15 | 107 | 1.07e-22 | 95.5 |
| Msa0538600 | AT4G27470.1 | 35.200 | 125 | 64 | 3 | 78 | 189 | 42 | 162 | 5.61e-19 | 86.3 |
| Msa0538600 | AT4G03510.3 | 43.956 | 91 | 38 | 3 | 78 | 160 | 46 | 131 | 1.14e-18 | 85.5 |
| Msa0538600 | AT4G03510.1 | 43.956 | 91 | 38 | 3 | 78 | 160 | 46 | 131 | 1.14e-18 | 85.5 |
| Msa0538600 | AT4G03510.2 | 43.956 | 91 | 38 | 3 | 78 | 160 | 46 | 131 | 1.14e-18 | 85.5 |
| Msa0538600 | AT4G03510.4 | 43.956 | 91 | 38 | 3 | 78 | 160 | 46 | 131 | 1.14e-18 | 85.5 |
Find 109 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGGTATTATTCCAATTTA+TGG | 0.104536 | 4_1:-18050948 | Msa0538600:CDS |
| CTTATTCTCATAAGCTCTTT+TGG | 0.191630 | 4_1:-18048432 | Msa0538600:three_prime_UTR |
| CCATTTCCATGTCCATAAAT+TGG | 0.194274 | 4_1:+18050936 | None:intergenic |
| TTATCAACATTCCTACTTAA+AGG | 0.205288 | 4_1:+18050369 | None:intergenic |
| CTATCAGGTGTGGTACTATT+AGG | 0.241873 | 4_1:+18050723 | None:intergenic |
| GTCGATAATGTTGCTGTTAT+AGG | 0.252556 | 4_1:-18048851 | Msa0538600:CDS |
| TGTAAGGATATTTGCATGTT+TGG | 0.275252 | 4_1:-18048552 | Msa0538600:three_prime_UTR |
| CATAACCGAATTGGTGGATT+TGG | 0.278139 | 4_1:-18050768 | Msa0538600:CDS |
| CTTCTGTGTCTCTGTTAAAT+AGG | 0.287511 | 4_1:-18048877 | Msa0538600:CDS |
| TGACTGTTTGATATAACTTA+TGG | 0.289048 | 4_1:-18048490 | Msa0538600:three_prime_UTR |
| GTTGATAATGTTGCTGTTGC+AGG | 0.300831 | 4_1:-18050354 | Msa0538600:CDS |
| TATCAGGTGTGGTACTATTA+GGG | 0.315528 | 4_1:+18050724 | None:intergenic |
| CTTCTATTGTCCAAAGTATT+CGG | 0.320027 | 4_1:-18050797 | Msa0538600:CDS |
| GGCAAACCATTGTTTCTATC+AGG | 0.323588 | 4_1:+18050708 | None:intergenic |
| TCATGCACTACTTTCATTCT+CGG | 0.338771 | 4_1:-18048625 | Msa0538600:three_prime_UTR |
| AGCTGCTGCAGCTACATAAT+TGG | 0.343155 | 4_1:+18050401 | None:intergenic |
| CTTTGATTGTAATATTTGTT+TGG | 0.349272 | 4_1:-18051096 | Msa0538600:CDS |
| TATGAAACCGCCGAATACTT+TGG | 0.373232 | 4_1:+18050787 | None:intergenic |
| ATTCAGATAACCAATGTTAC+AGG | 0.375175 | 4_1:-18051305 | Msa0538600:CDS |
| CGGCGGTTTCATAACCGAAT+TGG | 0.383576 | 4_1:-18050777 | Msa0538600:CDS |
| CCAATTTATGGACATGGAAA+TGG | 0.384021 | 4_1:-18050936 | Msa0538600:CDS |
| TTCTGCCGAAAGATTAGTTC+AGG | 0.390256 | 4_1:-18050562 | Msa0538600:CDS |
| GACCTTGAATCATATATTAA+TGG | 0.393749 | 4_1:-18050540 | Msa0538600:CDS |
| GGAGCGGAACGATGCTGATC+AGG | 0.412122 | 4_1:-18051237 | Msa0538600:CDS |
| TGAACATGGTGGTTCTCAAC+AGG | 0.413573 | 4_1:-18050655 | Msa0538600:CDS |
| GACCATTAATATATGATTCA+AGG | 0.415979 | 4_1:+18050538 | None:intergenic |
| TGCAGTTTCTCCTGTAACAT+TGG | 0.419434 | 4_1:+18051295 | None:intergenic |
| CTTCTTCTACCGTTTGATGA+AGG | 0.424965 | 4_1:+18048779 | None:intergenic |
| CTTCTGTTTCTCCTTTAAGT+AGG | 0.427847 | 4_1:-18050380 | Msa0538600:CDS |
| GTGGTTCTCAACAGGTTTCA+AGG | 0.428291 | 4_1:-18050647 | Msa0538600:CDS |
| TATATTAATGGTCACAATAC+AGG | 0.430809 | 4_1:-18050528 | Msa0538600:CDS |
| ATCTGAATCCGAGAGGAGTT+CGG | 0.434023 | 4_1:+18051320 | None:intergenic |
| GTTACCTCCCCTTTACAAAC+AGG | 0.438464 | 4_1:+18050975 | None:intergenic |
| GTCTGCGTGCGAGACTGAAC+AGG | 0.444476 | 4_1:+18050687 | None:intergenic |
| GGGATGGAAGAGATTGATAA+TGG | 0.448635 | 4_1:-18051146 | Msa0538600:CDS |
| GTTCTCCAAATCCACCAATT+CGG | 0.449571 | 4_1:+18050763 | None:intergenic |
| AGGAATGTCCTGTTTGTAAA+GGG | 0.451056 | 4_1:-18050983 | Msa0538600:CDS |
| AGTCATTTCGATATTCTTGT+TGG | 0.454214 | 4_1:+18048725 | None:intergenic |
| TAGAAGAAGAAGATGCTCCT+TGG | 0.455800 | 4_1:+18050814 | None:intergenic |
| TAAAGGGGAGGTAACTGAAT+CGG | 0.458742 | 4_1:-18050967 | Msa0538600:CDS |
| TTCTTCTACCGTTTGATGAA+GGG | 0.463767 | 4_1:+18048780 | None:intergenic |
| CTCTCAACTCTAGGTGCCTT+AGG | 0.467180 | 4_1:+18050858 | None:intergenic |
| AGAAGAAGAAGATGCTCCTT+GGG | 0.474601 | 4_1:+18050815 | None:intergenic |
| TGACCGCAACATGTCAAAAC+AGG | 0.474643 | 4_1:+18051059 | None:intergenic |
| GGTAAAGTGGAGGAGAGTAG+TGG | 0.474653 | 4_1:-18051125 | Msa0538600:CDS |
| CGGTTTCATAACCGAATTGG+TGG | 0.476371 | 4_1:-18050774 | Msa0538600:CDS |
| AATCTTATTCAATAGATGTA+AGG | 0.478243 | 4_1:-18048568 | Msa0538600:three_prime_UTR |
| TCAAACGGTAGAAGAAGAAA+TGG | 0.486110 | 4_1:-18048773 | Msa0538600:CDS |
| GGTTGCCGCCGAACTCCTCT+CGG | 0.492462 | 4_1:-18051328 | Msa0538600:CDS |
| AGAGATTGATAATGGTAAAG+TGG | 0.493881 | 4_1:-18051138 | Msa0538600:CDS |
| CTTCTACCTCTAGATGAAGA+AGG | 0.495035 | 4_1:+18050282 | None:intergenic |
| AAGGTCCTGAACTAATCTTT+CGG | 0.496077 | 4_1:+18050557 | None:intergenic |
| CATTTGATAGCAAAAGCTCT+AGG | 0.498838 | 4_1:-18051167 | Msa0538600:CDS |
| GAGAGTTCCTCCTCGACCTA+AGG | 0.502667 | 4_1:-18050874 | Msa0538600:CDS |
| AAGGAATGTCCTGTTTGTAA+AGG | 0.503450 | 4_1:-18050984 | Msa0538600:CDS |
| GTTGAATTTCTAGTAACAGC+AGG | 0.509806 | 4_1:+18050483 | None:intergenic |
| CTGTTAGACCCTTCATCAAA+CGG | 0.512392 | 4_1:-18048788 | Msa0538600:CDS |
| ATCAGCATTAAATTCTGCAA+TGG | 0.517331 | 4_1:-18050586 | Msa0538600:CDS |
| AAAGGGGAGGTAACTGAATC+GGG | 0.517863 | 4_1:-18050966 | Msa0538600:CDS |
| GCGAAGAACGGAGGGAGGAG+CGG | 0.521333 | 4_1:-18051253 | Msa0538600:CDS |
| ATTATTCCAATTTATGGACA+TGG | 0.526065 | 4_1:-18050942 | Msa0538600:CDS |
| AACGATGCTGATCAGGAGGA+AGG | 0.533514 | 4_1:-18051230 | Msa0538600:CDS |
| GTAAAGTGGAGGAGAGTAGT+GGG | 0.535109 | 4_1:-18051124 | Msa0538600:CDS |
| TACAACTGATAGAAATGTAC+AGG | 0.535539 | 4_1:-18050319 | Msa0538600:CDS |
| GCAACAGCAGGTGATGTTCA+AGG | 0.537071 | 4_1:-18051275 | Msa0538600:CDS |
| TCGAGGAGGAACTCTCAAAC+CGG | 0.538001 | 4_1:+18050881 | None:intergenic |
| ACTCTAGGTGCCTTAGGTCG+AGG | 0.546117 | 4_1:+18050864 | None:intergenic |
| CAGATGGAAATGAAAGAAGC+CGG | 0.547924 | 4_1:-18050900 | Msa0538600:CDS |
| TGTCTAATACTCTCAACTCT+AGG | 0.555708 | 4_1:+18050849 | None:intergenic |
| CTAGACCCTTCTTCATCTAG+AGG | 0.556545 | 4_1:-18050288 | Msa0538600:intron |
| GGATAGTTGAAAGTGTGAAA+GGG | 0.557671 | 4_1:-18051208 | Msa0538600:CDS |
| GTTTCAAGGTTGCTAGAGCA+AGG | 0.560862 | 4_1:-18050633 | Msa0538600:CDS |
| GATAGTTGAAAGTGTGAAAG+GGG | 0.566431 | 4_1:-18051207 | Msa0538600:CDS |
| ACAGGAGAAACTGCAACAGC+AGG | 0.572374 | 4_1:-18051287 | Msa0538600:CDS |
| GTGATGTTCAAGGCGAAGAA+CGG | 0.575661 | 4_1:-18051265 | Msa0538600:CDS |
| GGGATAGTTGAAAGTGTGAA+AGG | 0.577330 | 4_1:-18051209 | Msa0538600:CDS |
| TAGTTGAAAGTGTGAAAGGG+GGG | 0.581279 | 4_1:-18051205 | Msa0538600:CDS |
| ATTTGATAGCAAAAGCTCTA+GGG | 0.584132 | 4_1:-18051166 | Msa0538600:CDS |
| TTCTACCTCTAGATGAAGAA+GGG | 0.590516 | 4_1:+18050283 | None:intergenic |
| GATTGATAATGGTAAAGTGG+AGG | 0.594410 | 4_1:-18051135 | Msa0538600:CDS |
| ACCATTGTTTCTATCAGGTG+TGG | 0.595045 | 4_1:+18050713 | None:intergenic |
| GAATTTCTAGTAACAGCAGG+AGG | 0.597165 | 4_1:+18050486 | None:intergenic |
| TATGGACATGGAAATGGCGG+CGG | 0.603447 | 4_1:-18050930 | Msa0538600:CDS |
| TGGCGGCGGTGATTGTCAGA+TGG | 0.606714 | 4_1:-18050916 | Msa0538600:CDS |
| ACGATGCTGATCAGGAGGAA+GGG | 0.611332 | 4_1:-18051229 | Msa0538600:CDS |
| GATAGCAAAAGCTCTAGGGA+TGG | 0.616270 | 4_1:-18051162 | Msa0538600:CDS |
| ATGTTCAAGGCGAAGAACGG+AGG | 0.619140 | 4_1:-18051262 | Msa0538600:CDS |
| TGTTCAAGGCGAAGAACGGA+GGG | 0.630328 | 4_1:-18051261 | Msa0538600:CDS |
| GCGGAACGATGCTGATCAGG+AGG | 0.630441 | 4_1:-18051234 | Msa0538600:CDS |
| ATAGTTGAAAGTGTGAAAGG+GGG | 0.631256 | 4_1:-18051206 | Msa0538600:CDS |
| AGACAGAGGTTGCTAACCCA+AGG | 0.632250 | 4_1:-18050831 | Msa0538600:CDS |
| CAGACAGACAATAATGAACA+TGG | 0.634072 | 4_1:-18050669 | Msa0538600:CDS |
| ACCACACCTGATAGAAACAA+TGG | 0.638268 | 4_1:-18050714 | Msa0538600:CDS |
| TGCAGCTGTAGAATCAGTCA+CGG | 0.640246 | 4_1:+18048904 | None:intergenic |
| ATGTCCTGTTTGTAAAGGGG+AGG | 0.641102 | 4_1:-18050979 | Msa0538600:CDS |
| ATTTATGGACATGGAAATGG+CGG | 0.647005 | 4_1:-18050933 | Msa0538600:CDS |
| GAGTTGAGAGTATTAGACAG+AGG | 0.654945 | 4_1:-18050845 | Msa0538600:CDS |
| GGAATGTCCTGTTTGTAAAG+GGG | 0.658869 | 4_1:-18050982 | Msa0538600:CDS |
| CTATTGTCCAAAGTATTCGG+CGG | 0.665724 | 4_1:-18050794 | Msa0538600:CDS |
| TCAAGGCGAAGAACGGAGGG+AGG | 0.671112 | 4_1:-18051258 | Msa0538600:CDS |
| ATTAATGGTCACAATACAGG+AGG | 0.672550 | 4_1:-18050525 | Msa0538600:CDS |
| AGGCTCAGAAATTCAGACAA+CGG | 0.673554 | 4_1:-18048831 | Msa0538600:CDS |
| CTAGGTGCCTTAGGTCGAGG+AGG | 0.679868 | 4_1:+18050867 | None:intergenic |
| GTATGCGTATTCGAAAGCAA+AGG | 0.694045 | 4_1:-18051003 | Msa0538600:CDS |
| AGTATGCATGCAAGTAAACG+AGG | 0.704101 | 4_1:+18048660 | None:intergenic |
| TACGATAACTGATAGAAACA+CGG | 0.706100 | 4_1:+18051023 | None:intergenic |
| TGAATCCGAGAGGAGTTCGG+CGG | 0.720440 | 4_1:+18051323 | None:intergenic |
| ATTGGTTATCTGAATCCGAG+AGG | 0.732391 | 4_1:+18051313 | None:intergenic |
| ACAGACAATAATGAACATGG+TGG | 0.774155 | 4_1:-18050666 | Msa0538600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAAAATTAATTTAAAATGA+AGG | - | chr4_1:18050622-18050641 | Msa0538600:CDS | 10.0% |
| !! | CTTTGATTGTAATATTTGTT+TGG | - | chr4_1:18048625-18048644 | Msa0538600:three_prime_UTR | 20.0% |
| !! | AACATATTTGATATTTGTCT+TGG | + | chr4_1:18049629-18049648 | None:intergenic | 20.0% |
| !!! | AGTTTTATTCAATAGATGTA+AGG | - | chr4_1:18049676-18049695 | Msa0538600:intron | 20.0% |
| !! | TTAAACTGTTTATCCAAATA+GGG | - | chr4_1:18049935-18049954 | Msa0538600:intron | 20.0% |
| !! | TCTAATAAAGAACATGTAAA+GGG | + | chr4_1:18050045-18050064 | None:intergenic | 20.0% |
| !! | ATCTAATAAAGAACATGTAA+AGG | + | chr4_1:18050046-18050065 | None:intergenic | 20.0% |
| !!! | TCTTTTGAATATCTAGTTTT+TGG | - | chr4_1:18050075-18050094 | Msa0538600:intron | 20.0% |
| !!! | TATCATGATTGTTTCTTATA+AGG | - | chr4_1:18050278-18050297 | Msa0538600:intron | 20.0% |
| !!! | AGTTTGTTGTATATATCATA+TGG | + | chr4_1:18050336-18050355 | None:intergenic | 20.0% |
| !! | AATCTTATTCAATAGATGTA+AGG | - | chr4_1:18051153-18051172 | Msa0538600:CDS | 20.0% |
| ! | ATTATTCCAATTTATGGACA+TGG | - | chr4_1:18048779-18048798 | Msa0538600:CDS | 25.0% |
| ! | GACCTTGAATCATATATTAA+TGG | - | chr4_1:18049181-18049200 | Msa0538600:intron | 25.0% |
| ! | GACCATTAATATATGATTCA+AGG | + | chr4_1:18049186-18049205 | None:intergenic | 25.0% |
| ! | TATATTAATGGTCACAATAC+AGG | - | chr4_1:18049193-18049212 | Msa0538600:intron | 25.0% |
| ! | TTATCAACATTCCTACTTAA+AGG | + | chr4_1:18049355-18049374 | None:intergenic | 25.0% |
| !! | ATGATGATCTTTTATGTAAG+TGG | - | chr4_1:18049519-18049538 | Msa0538600:intron | 25.0% |
| !! | ACTTATTTGAGATTATCTAC+TGG | - | chr4_1:18049719-18049738 | Msa0538600:intron | 25.0% |
| ! | GTTAAACTGTTTATCCAAAT+AGG | - | chr4_1:18049934-18049953 | Msa0538600:intron | 25.0% |
| ! | GTTCTTTATTAGATCTATCT+TGG | - | chr4_1:18050052-18050071 | Msa0538600:intron | 25.0% |
| !!! | TATCTAGTTTTTGGATCTTT+TGG | - | chr4_1:18050084-18050103 | Msa0538600:intron | 25.0% |
| !! | CTTAAACTATAGAGTATTAG+AGG | + | chr4_1:18050204-18050223 | None:intergenic | 25.0% |
| ! | ACTCTAATGTTAAGCTAATT+AGG | + | chr4_1:18050436-18050455 | None:intergenic | 25.0% |
| !! | ACTTAAGTTTTCTGTCTTTA+TGG | + | chr4_1:18050598-18050617 | None:intergenic | 25.0% |
| ! | CAAAAAAAGATAGAGACTTA+TGG | - | chr4_1:18050737-18050756 | Msa0538600:CDS | 25.0% |
| ! | TGACTGTTTGATATAACTTA+TGG | - | chr4_1:18051231-18051250 | Msa0538600:CDS | 25.0% |
| ATTCAGATAACCAATGTTAC+AGG | - | chr4_1:18048416-18048435 | Msa0538600:three_prime_UTR | 30.0% | |
| ! | ATTTGATAGCAAAAGCTCTA+GGG | - | chr4_1:18048555-18048574 | Msa0538600:three_prime_UTR | 30.0% |
| !! | AGAGATTGATAATGGTAAAG+TGG | - | chr4_1:18048583-18048602 | Msa0538600:three_prime_UTR | 30.0% |
| TACGATAACTGATAGAAACA+CGG | + | chr4_1:18048701-18048720 | None:intergenic | 30.0% | |
| TCGGGTATTATTCCAATTTA+TGG | - | chr4_1:18048773-18048792 | Msa0538600:CDS | 30.0% | |
| ! | CTTCTATTGTCCAAAGTATT+CGG | - | chr4_1:18048924-18048943 | Msa0538600:CDS | 30.0% |
| ATCAGCATTAAATTCTGCAA+TGG | - | chr4_1:18049135-18049154 | Msa0538600:intron | 30.0% | |
| TACAACTGATAGAAATGTAC+AGG | - | chr4_1:18049402-18049421 | Msa0538600:intron | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | + | chr4_1:18049709-18049728 | None:intergenic | 30.0% | |
| CATACTGTAACAAACATAAG+AGG | + | chr4_1:18049979-18049998 | None:intergenic | 30.0% | |
| ! | CTCTTATGTTTGTTACAGTA+TGG | - | chr4_1:18049977-18049996 | Msa0538600:intron | 30.0% |
| ! | TTTTGGTCAGTATTCAGATT+GGG | - | chr4_1:18050101-18050120 | Msa0538600:intron | 30.0% |
| GATTACTTGAATACAACCTT+TGG | - | chr4_1:18050171-18050190 | Msa0538600:intron | 30.0% | |
| CATGCAACATGTTGTATTAT+CGG | - | chr4_1:18050246-18050265 | Msa0538600:intron | 30.0% | |
| AGTCATTTCGATATTCTTGT+TGG | + | chr4_1:18050999-18051018 | None:intergenic | 30.0% | |
| ! | AAATGACTGTCTTTTCTGTT+AGG | - | chr4_1:18051011-18051030 | Msa0538600:CDS | 30.0% |
| ! | AATGACTGTCTTTTCTGTTA+GGG | - | chr4_1:18051012-18051031 | Msa0538600:CDS | 30.0% |
| TGTAAGGATATTTGCATGTT+TGG | - | chr4_1:18051169-18051188 | Msa0538600:CDS | 30.0% | |
| ! | CTTATTCTCATAAGCTCTTT+TGG | - | chr4_1:18051289-18051308 | Msa0538600:CDS | 30.0% |
| ! | AAGCTCTTTTGGATAACTTA+TGG | - | chr4_1:18051300-18051319 | Msa0538600:CDS | 30.0% |
| ! | GGATAGTTGAAAGTGTGAAA+GGG | - | chr4_1:18048513-18048532 | Msa0538600:three_prime_UTR | 35.0% |
| ! | GATAGTTGAAAGTGTGAAAG+GGG | - | chr4_1:18048514-18048533 | Msa0538600:three_prime_UTR | 35.0% |
| ! | ATAGTTGAAAGTGTGAAAGG+GGG | - | chr4_1:18048515-18048534 | Msa0538600:three_prime_UTR | 35.0% |
| ! | CATTTGATAGCAAAAGCTCT+AGG | - | chr4_1:18048554-18048573 | Msa0538600:three_prime_UTR | 35.0% |
| !! | GATTGATAATGGTAAAGTGG+AGG | - | chr4_1:18048586-18048605 | Msa0538600:three_prime_UTR | 35.0% |
| AAGGAATGTCCTGTTTGTAA+AGG | - | chr4_1:18048737-18048756 | Msa0538600:CDS | 35.0% | |
| AGGAATGTCCTGTTTGTAAA+GGG | - | chr4_1:18048738-18048757 | Msa0538600:CDS | 35.0% | |
| CCATTTCCATGTCCATAAAT+TGG | + | chr4_1:18048788-18048807 | None:intergenic | 35.0% | |
| CCAATTTATGGACATGGAAA+TGG | - | chr4_1:18048785-18048804 | Msa0538600:CDS | 35.0% | |
| ATTTATGGACATGGAAATGG+CGG | - | chr4_1:18048788-18048807 | Msa0538600:CDS | 35.0% | |
| TGTCTAATACTCTCAACTCT+AGG | + | chr4_1:18048875-18048894 | None:intergenic | 35.0% | |
| TATCAGGTGTGGTACTATTA+GGG | + | chr4_1:18049000-18049019 | None:intergenic | 35.0% | |
| CAGACAGACAATAATGAACA+TGG | - | chr4_1:18049052-18049071 | Msa0538600:intron | 35.0% | |
| ACAGACAATAATGAACATGG+TGG | - | chr4_1:18049055-18049074 | Msa0538600:intron | 35.0% | |
| AAGGTCCTGAACTAATCTTT+CGG | + | chr4_1:18049167-18049186 | None:intergenic | 35.0% | |
| ATTAATGGTCACAATACAGG+AGG | - | chr4_1:18049196-18049215 | Msa0538600:intron | 35.0% | |
| !! | GTTGAATTTCTAGTAACAGC+AGG | + | chr4_1:18049241-18049260 | None:intergenic | 35.0% |
| ! | CTTCTGTTTCTCCTTTAAGT+AGG | - | chr4_1:18049341-18049360 | Msa0538600:intron | 35.0% |
| TTCTACCTCTAGATGAAGAA+GGG | + | chr4_1:18049441-18049460 | None:intergenic | 35.0% | |
| TGTAAGGATATTTGCCTGTT+TGG | - | chr4_1:18049692-18049711 | Msa0538600:intron | 35.0% | |
| AGAGGATATTGACAATTAGC+AGG | + | chr4_1:18049961-18049980 | None:intergenic | 35.0% | |
| ! | CTTTTGGTCAGTATTCAGAT+TGG | - | chr4_1:18050100-18050119 | Msa0538600:intron | 35.0% |
| TATTAGAGGCTCTTATCCAA+AGG | + | chr4_1:18050190-18050209 | None:intergenic | 35.0% | |
| GCAATGCACATGATCTTTAT+GGG | + | chr4_1:18050227-18050246 | None:intergenic | 35.0% | |
| TGCAATGCACATGATCTTTA+TGG | + | chr4_1:18050228-18050247 | None:intergenic | 35.0% | |
| ! | CAATGTGTCTTTATTTCGCA+TGG | + | chr4_1:18050392-18050411 | None:intergenic | 35.0% |
| TATTTCCACTCCTTCTGTAT+TGG | - | chr4_1:18050490-18050509 | Msa0538600:CDS | 35.0% | |
| ATCCTGTTGTTGCATGTAAT+AGG | - | chr4_1:18050771-18050790 | Msa0538600:CDS | 35.0% | |
| TCCTGTTGTTGCATGTAATA+GGG | - | chr4_1:18050772-18050791 | Msa0538600:CDS | 35.0% | |
| CTTCTGTGTCTCTGTTAAAT+AGG | - | chr4_1:18050844-18050863 | Msa0538600:CDS | 35.0% | |
| ! | GTCGATAATGTTGCTGTTAT+AGG | - | chr4_1:18050870-18050889 | Msa0538600:CDS | 35.0% |
| TTCTTCTACCGTTTGATGAA+GGG | + | chr4_1:18050944-18050963 | None:intergenic | 35.0% | |
| TCAAACGGTAGAAGAAGAAA+TGG | - | chr4_1:18050948-18050967 | Msa0538600:CDS | 35.0% | |
| TCATGCACTACTTTCATTCT+CGG | - | chr4_1:18051096-18051115 | Msa0538600:CDS | 35.0% | |
| ATTGGTTATCTGAATCCGAG+AGG | + | chr4_1:18048411-18048430 | None:intergenic | 40.0% | |
| TGCAGTTTCTCCTGTAACAT+TGG | + | chr4_1:18048429-18048448 | None:intergenic | 40.0% | |
| ! | GGGATAGTTGAAAGTGTGAA+AGG | - | chr4_1:18048512-18048531 | Msa0538600:three_prime_UTR | 40.0% |
| ! | TAGTTGAAAGTGTGAAAGGG+GGG | - | chr4_1:18048516-18048535 | Msa0538600:three_prime_UTR | 40.0% |
| GGGATGGAAGAGATTGATAA+TGG | - | chr4_1:18048575-18048594 | Msa0538600:three_prime_UTR | 40.0% | |
| !!! | GATCCTGTTTTGACATGTTG+CGG | - | chr4_1:18048659-18048678 | Msa0538600:three_prime_UTR | 40.0% |
| !!! | GTTGCGGTCATTTGTTTTGT+TGG | - | chr4_1:18048675-18048694 | Msa0538600:three_prime_UTR | 40.0% |
| GTATGCGTATTCGAAAGCAA+AGG | - | chr4_1:18048718-18048737 | Msa0538600:exon | 40.0% | |
| GGAATGTCCTGTTTGTAAAG+GGG | - | chr4_1:18048739-18048758 | Msa0538600:CDS | 40.0% | |
| TAAAGGGGAGGTAACTGAAT+CGG | - | chr4_1:18048754-18048773 | Msa0538600:CDS | 40.0% | |
| CAGATGGAAATGAAAGAAGC+CGG | - | chr4_1:18048821-18048840 | Msa0538600:CDS | 40.0% | |
| !! | GAGTTGAGAGTATTAGACAG+AGG | - | chr4_1:18048876-18048895 | Msa0538600:CDS | 40.0% |
| AGAAGAAGAAGATGCTCCTT+GGG | + | chr4_1:18048909-18048928 | None:intergenic | 40.0% | |
| TAGAAGAAGAAGATGCTCCT+TGG | + | chr4_1:18048910-18048929 | None:intergenic | 40.0% | |
| ! | CTATTGTCCAAAGTATTCGG+CGG | - | chr4_1:18048927-18048946 | Msa0538600:CDS | 40.0% |
| TATGAAACCGCCGAATACTT+TGG | + | chr4_1:18048937-18048956 | None:intergenic | 40.0% | |
| !! | CATAACCGAATTGGTGGATT+TGG | - | chr4_1:18048953-18048972 | Msa0538600:intron | 40.0% |
| GTTCTCCAAATCCACCAATT+CGG | + | chr4_1:18048961-18048980 | None:intergenic | 40.0% | |
| CTATCAGGTGTGGTACTATT+AGG | + | chr4_1:18049001-18049020 | None:intergenic | 40.0% | |
| ACCACACCTGATAGAAACAA+TGG | - | chr4_1:18049007-18049026 | Msa0538600:intron | 40.0% | |
| !! | ACCATTGTTTCTATCAGGTG+TGG | + | chr4_1:18049011-18049030 | None:intergenic | 40.0% |
| !! | GGCAAACCATTGTTTCTATC+AGG | + | chr4_1:18049016-18049035 | None:intergenic | 40.0% |
| ! | TTCTGCCGAAAGATTAGTTC+AGG | - | chr4_1:18049159-18049178 | Msa0538600:intron | 40.0% |
| !! | GAATTTCTAGTAACAGCAGG+AGG | + | chr4_1:18049238-18049257 | None:intergenic | 40.0% |
| !! | GTTGATAATGTTGCTGTTGC+AGG | - | chr4_1:18049367-18049386 | Msa0538600:intron | 40.0% |
| CTTCTACCTCTAGATGAAGA+AGG | + | chr4_1:18049442-18049461 | None:intergenic | 40.0% | |
| TCTTCATCTAGAGGTAGAAG+AGG | - | chr4_1:18049442-18049461 | Msa0538600:intron | 40.0% | |
| CGCAATCTTCTTCTTCTTCT+TGG | + | chr4_1:18049499-18049518 | None:intergenic | 40.0% | |
| AGTATGCATGCATGTAAACG+AGG | + | chr4_1:18049570-18049589 | None:intergenic | 40.0% | |
| TGTCTCACTTGAGTAAGTTG+AGG | - | chr4_1:18050000-18050019 | Msa0538600:intron | 40.0% | |
| ACATGCAACAACAGGATATC+TGG | + | chr4_1:18050768-18050787 | None:intergenic | 40.0% | |
| TCCCTATTACATGCAACAAC+AGG | + | chr4_1:18050776-18050795 | None:intergenic | 40.0% | |
| AGGCTCAGAAATTCAGACAA+CGG | - | chr4_1:18050890-18050909 | Msa0538600:CDS | 40.0% | |
| CTGTTAGACCCTTCATCAAA+CGG | - | chr4_1:18050933-18050952 | Msa0538600:CDS | 40.0% | |
| CTTCTTCTACCGTTTGATGA+AGG | + | chr4_1:18050945-18050964 | None:intergenic | 40.0% | |
| AGTATGCATGCAAGTAAACG+AGG | + | chr4_1:18051064-18051083 | None:intergenic | 40.0% | |
| ATCTGAATCCGAGAGGAGTT+CGG | + | chr4_1:18048404-18048423 | None:intergenic | 45.0% | |
| GTGATGTTCAAGGCGAAGAA+CGG | - | chr4_1:18048456-18048475 | Msa0538600:three_prime_UTR | 45.0% | |
| AAAGTGTGAAAGGGGGGAAA+AGG | - | chr4_1:18048522-18048541 | Msa0538600:three_prime_UTR | 45.0% | |
| !! | GATAGCAAAAGCTCTAGGGA+TGG | - | chr4_1:18048559-18048578 | Msa0538600:three_prime_UTR | 45.0% |
| GTAAAGTGGAGGAGAGTAGT+GGG | - | chr4_1:18048597-18048616 | Msa0538600:three_prime_UTR | 45.0% | |
| TGACCGCAACATGTCAAAAC+AGG | + | chr4_1:18048665-18048684 | None:intergenic | 45.0% | |
| ATGTCCTGTTTGTAAAGGGG+AGG | - | chr4_1:18048742-18048761 | Msa0538600:CDS | 45.0% | |
| GTTACCTCCCCTTTACAAAC+AGG | + | chr4_1:18048749-18048768 | None:intergenic | 45.0% | |
| AAAGGGGAGGTAACTGAATC+GGG | - | chr4_1:18048755-18048774 | Msa0538600:CDS | 45.0% | |
| CGGTTTCATAACCGAATTGG+TGG | - | chr4_1:18048947-18048966 | Msa0538600:intron | 45.0% | |
| TGAACATGGTGGTTCTCAAC+AGG | - | chr4_1:18049066-18049085 | Msa0538600:intron | 45.0% | |
| GTGGTTCTCAACAGGTTTCA+AGG | - | chr4_1:18049074-18049093 | Msa0538600:intron | 45.0% | |
| GTTTCAAGGTTGCTAGAGCA+AGG | - | chr4_1:18049088-18049107 | Msa0538600:intron | 45.0% | |
| AGCTGCTGCAGCTACATAAT+TGG | + | chr4_1:18049323-18049342 | None:intergenic | 45.0% | |
| CTAGACCCTTCTTCATCTAG+AGG | - | chr4_1:18049433-18049452 | Msa0538600:intron | 45.0% | |
| GACAATTAGCAGGCCCTATT+TGG | + | chr4_1:18049951-18049970 | None:intergenic | 45.0% | |
| ACCACAAACTGGAGTCAATG+AGG | + | chr4_1:18050135-18050154 | None:intergenic | 45.0% | |
| !! | TCATTGACTCCAGTTTGTGG+TGG | - | chr4_1:18050134-18050153 | Msa0538600:intron | 45.0% |
| TTGTGCCAATACAGAAGGAG+TGG | + | chr4_1:18050498-18050517 | None:intergenic | 45.0% | |
| ! | ACTCCTTCTGTATTGGCACA+AGG | - | chr4_1:18050497-18050516 | Msa0538600:CDS | 45.0% |
| ATCGTCATACGAGTTGCTGT+CGG | + | chr4_1:18050523-18050542 | None:intergenic | 45.0% | |
| TGCAGCTGTAGAATCAGTCA+CGG | + | chr4_1:18050820-18050839 | None:intergenic | 45.0% | |
| ACAGGAGAAACTGCAACAGC+AGG | - | chr4_1:18048434-18048453 | Msa0538600:three_prime_UTR | 50.0% | |
| GCAACAGCAGGTGATGTTCA+AGG | - | chr4_1:18048446-18048465 | Msa0538600:three_prime_UTR | 50.0% | |
| ATGTTCAAGGCGAAGAACGG+AGG | - | chr4_1:18048459-18048478 | Msa0538600:three_prime_UTR | 50.0% | |
| TGTTCAAGGCGAAGAACGGA+GGG | - | chr4_1:18048460-18048479 | Msa0538600:three_prime_UTR | 50.0% | |
| AACGATGCTGATCAGGAGGA+AGG | - | chr4_1:18048491-18048510 | Msa0538600:three_prime_UTR | 50.0% | |
| ACGATGCTGATCAGGAGGAA+GGG | - | chr4_1:18048492-18048511 | Msa0538600:three_prime_UTR | 50.0% | |
| GGTAAAGTGGAGGAGAGTAG+TGG | - | chr4_1:18048596-18048615 | Msa0538600:three_prime_UTR | 50.0% | |
| TATGGACATGGAAATGGCGG+CGG | - | chr4_1:18048791-18048810 | Msa0538600:CDS | 50.0% | |
| TCGAGGAGGAACTCTCAAAC+CGG | + | chr4_1:18048843-18048862 | None:intergenic | 50.0% | |
| CTCTCAACTCTAGGTGCCTT+AGG | + | chr4_1:18048866-18048885 | None:intergenic | 50.0% | |
| AGACAGAGGTTGCTAACCCA+AGG | - | chr4_1:18048890-18048909 | Msa0538600:CDS | 50.0% | |
| CGGCGGTTTCATAACCGAAT+TGG | - | chr4_1:18048944-18048963 | Msa0538600:intron | 50.0% | |
| !! | GCCTCATTGACTCCAGTTTG+TGG | - | chr4_1:18050131-18050150 | Msa0538600:intron | 50.0% |
| TTGACTCCAGTTTGTGGTGG+TGG | - | chr4_1:18050137-18050156 | Msa0538600:intron | 50.0% | |
| TGACTCCAGTTTGTGGTGGT+GGG | - | chr4_1:18050138-18050157 | Msa0538600:intron | 50.0% | |
| TGAATCCGAGAGGAGTTCGG+CGG | + | chr4_1:18048401-18048420 | None:intergenic | 55.0% | |
| GAGAGTTCCTCCTCGACCTA+AGG | - | chr4_1:18048847-18048866 | Msa0538600:CDS | 55.0% | |
| ACTCTAGGTGCCTTAGGTCG+AGG | + | chr4_1:18048860-18048879 | None:intergenic | 55.0% | |
| ! | GACTCCAGTTTGTGGTGGTG+GGG | - | chr4_1:18050139-18050158 | Msa0538600:intron | 55.0% |
| ATGACCCCACCACCACAAAC+TGG | + | chr4_1:18050146-18050165 | None:intergenic | 55.0% | |
| !! | AGTTTGTGGTGGTGGGGTCA+TGG | - | chr4_1:18050145-18050164 | Msa0538600:intron | 55.0% |
| ! | CGGCCTTGTGCCAATACAGA+AGG | + | chr4_1:18050503-18050522 | None:intergenic | 55.0% |
| TCAAGGCGAAGAACGGAGGG+AGG | - | chr4_1:18048463-18048482 | Msa0538600:three_prime_UTR | 60.0% | |
| GGAGCGGAACGATGCTGATC+AGG | - | chr4_1:18048484-18048503 | Msa0538600:three_prime_UTR | 60.0% | |
| GCGGAACGATGCTGATCAGG+AGG | - | chr4_1:18048487-18048506 | Msa0538600:three_prime_UTR | 60.0% | |
| TGGCGGCGGTGATTGTCAGA+TGG | - | chr4_1:18048805-18048824 | Msa0538600:CDS | 60.0% | |
| CTAGGTGCCTTAGGTCGAGG+AGG | + | chr4_1:18048857-18048876 | None:intergenic | 60.0% | |
| GTCTGCGTGCGAGACTGAAC+AGG | + | chr4_1:18049037-18049056 | None:intergenic | 60.0% | |
| GCGAAGAACGGAGGGAGGAG+CGG | - | chr4_1:18048468-18048487 | Msa0538600:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 18048395 | 18051348 | 18048395 | ID=Msa0538600;Name=Msa0538600 |
| chr4_1 | mRNA | 18048395 | 18051348 | 18048395 | ID=Msa0538600-mRNA-1;Parent=Msa0538600;Name=Msa0538600-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0.5|1|1|1|2|332|427 |
| chr4_1 | exon | 18048395 | 18048950 | 18048395 | ID=Msa0538600-mRNA-1:exon:5352;Parent=Msa0538600-mRNA-1 |
| chr4_1 | exon | 18050289 | 18051348 | 18050289 | ID=Msa0538600-mRNA-1:exon:5351;Parent=Msa0538600-mRNA-1 |
| chr4_1 | CDS | 18050289 | 18051348 | 18050289 | ID=Msa0538600-mRNA-1:cds;Parent=Msa0538600-mRNA-1 |
| chr4_1 | CDS | 18048727 | 18048950 | 18048727 | ID=Msa0538600-mRNA-1:cds;Parent=Msa0538600-mRNA-1 |
| chr4_1 | three_prime_UTR | 18048395 | 18048726 | 18048395 | ID=Msa0538600-mRNA-1:three_prime_utr;Parent=Msa0538600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
