AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0344920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344920 MtrunA17_Chr4g0055031 91.667 48 4 0 1 48 464 511 2.69e-25 98.2
Msa0344920 MtrunA17_Chr8g0361791 77.551 49 10 1 1 48 460 508 2.38e-19 81.3
Msa0344920 MtrunA17_Chr3g0092501 75.510 49 11 1 1 48 457 505 8.60e-19 79.7
Msa0344920 MtrunA17_Chr5g0416991 71.429 49 13 1 1 48 459 507 1.70e-17 76.3
Msa0344920 MtrunA17_Chr3g0113981 66.667 48 16 0 1 48 537 584 1.46e-15 70.5
Msa0344920 MtrunA17_Chr3g0112341 66.000 50 15 1 1 48 527 576 3.28e-15 69.7
Msa0344920 MtrunA17_Chr8g0372471 64.583 48 17 0 1 48 755 802 1.08e-14 68.2
Msa0344920 MtrunA17_Chr3g0130381 62.500 48 18 0 1 48 641 688 1.68e-14 67.8
Msa0344920 MtrunA17_Chr8g0350351 62.500 48 18 0 1 48 455 502 2.46e-14 67.0
Msa0344920 MtrunA17_Chr7g0214551 67.347 49 15 1 1 48 428 476 3.58e-14 66.6
Msa0344920 MtrunA17_Chr8g0369481 60.417 48 19 0 1 48 450 497 4.45e-14 66.2
Msa0344920 MtrunA17_Chr5g0435751 64.000 50 16 1 1 48 479 528 6.33e-14 65.9
Msa0344920 MtrunA17_Chr5g0409411 56.250 48 21 0 1 48 452 499 1.32e-13 65.1
Msa0344920 MtrunA17_Chr8g0384431 60.417 48 19 0 1 48 671 718 2.08e-13 64.7
Msa0344920 MtrunA17_Chr5g0404761 62.500 48 18 0 1 48 139 186 4.53e-13 63.2
Msa0344920 MtrunA17_Chr1g0171781 43.902 82 41 3 1 80 461 539 5.48e-13 63.2
Msa0344920 MtrunA17_Chr5g0437501 56.250 48 21 0 1 48 474 521 8.02e-13 62.8
Msa0344920 MtrunA17_Chr1g0203741 61.224 49 18 1 1 48 477 525 8.28e-13 62.8
Msa0344920 MtrunA17_Chr7g0246681 58.333 48 20 0 1 48 442 489 1.07e-12 62.4
Msa0344920 MtrunA17_Chr8g0350391 61.224 49 18 1 1 48 490 538 2.32e-12 61.6
Msa0344920 MtrunA17_Chr1g0159741 56.000 50 20 1 1 48 516 565 2.67e-12 61.2
Msa0344920 MtrunA17_Chr7g0246701 59.184 49 19 1 1 48 485 533 3.60e-12 60.8
Msa0344920 MtrunA17_Chr8g0388881 61.224 49 18 1 1 48 480 528 4.96e-12 60.5
Msa0344920 MtrunA17_Chr6g0472571 59.184 49 19 1 1 48 486 534 8.31e-12 60.1
Msa0344920 MtrunA17_Chr1g0155141 52.083 48 23 0 1 48 563 610 9.32e-12 59.7
Msa0344920 MtrunA17_Chr3g0125511 58.000 50 19 1 1 48 605 654 1.70e-11 58.9
Msa0344920 MtrunA17_Chr1g0187601 56.250 48 21 0 1 48 471 518 1.76e-11 58.9
Msa0344920 MtrunA17_Chr2g0278931 72.973 37 10 0 60 96 178 214 4.40e-11 57.8
Msa0344920 MtrunA17_Chr1g0183721 52.083 48 23 0 1 48 442 489 5.46e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344920 AT1G26850.2 83.673 49 7 1 1 48 468 516 1.54e-21 88.2
Msa0344920 AT1G26850.1 83.673 49 7 1 1 48 468 516 1.54e-21 88.2
Msa0344920 AT4G18030.1 79.167 48 10 0 1 48 464 511 5.94e-21 86.3
Msa0344920 AT2G40280.1 64.583 48 17 0 1 48 450 497 2.52e-15 70.5
Msa0344920 AT3G56080.2 60.417 48 19 0 1 48 477 524 4.36e-15 69.7
Msa0344920 AT3G56080.1 60.417 48 19 0 1 48 477 524 4.40e-15 69.7
Msa0344920 AT2G34300.2 64.583 48 17 0 1 48 622 669 1.70e-14 68.2
Msa0344920 AT2G34300.3 64.583 48 17 0 1 48 622 669 1.70e-14 68.2
Msa0344920 AT2G34300.1 64.583 48 17 0 1 48 622 669 1.70e-14 68.2
Msa0344920 AT5G64030.1 62.500 48 18 0 1 48 681 728 2.60e-14 67.4
Msa0344920 AT4G19120.3 60.417 48 19 0 1 48 452 499 3.20e-14 67.0
Msa0344920 AT4G19120.1 60.417 48 19 0 1 48 452 499 3.26e-14 67.0
Msa0344920 AT4G19120.2 60.417 48 19 0 1 48 452 499 3.26e-14 67.0
Msa0344920 AT1G29470.1 62.500 48 18 0 1 48 622 669 5.52e-14 66.6
Msa0344920 AT1G29470.2 62.500 48 18 0 1 48 622 669 5.52e-14 66.6
Msa0344920 AT4G00740.1 62.500 48 18 0 1 48 448 495 6.77e-14 66.2
Msa0344920 AT4G00740.2 62.500 48 18 0 1 48 448 495 6.77e-14 66.2
Msa0344920 AT3G51070.2 60.417 48 19 0 1 48 754 801 8.11e-14 66.2
Msa0344920 AT3G51070.1 60.417 48 19 0 1 48 754 801 8.14e-14 66.2
Msa0344920 AT1G31850.1 56.250 48 21 0 1 48 458 505 4.79e-13 63.9
Msa0344920 AT1G31850.2 56.250 48 21 0 1 48 458 505 4.79e-13 63.9
Msa0344920 AT1G31850.4 56.250 48 21 0 1 48 458 505 4.79e-13 63.9
Msa0344920 AT1G31850.3 56.250 48 21 0 1 48 458 505 4.79e-13 63.9
Msa0344920 AT4G10440.1 63.265 49 17 1 1 48 476 524 7.02e-13 63.5
Msa0344920 AT1G19430.1 58.333 48 20 0 1 48 586 633 7.03e-13 63.5
Msa0344920 AT1G19430.3 58.333 48 20 0 1 48 586 633 7.03e-13 63.5
Msa0344920 AT5G06050.1 58.000 50 19 1 1 48 523 572 1.70e-12 62.4
Msa0344920 AT2G39750.1 58.000 50 19 1 1 48 551 600 2.17e-12 62.0
Msa0344920 AT1G33170.1 61.224 49 18 1 1 48 494 542 2.19e-12 62.0
Msa0344920 AT2G45750.1 63.265 49 17 1 1 48 475 523 2.44e-12 62.0
Msa0344920 AT4G00750.1 61.224 49 18 1 1 48 482 530 4.21e-12 61.2
Msa0344920 AT2G43200.2 59.184 49 19 1 1 48 471 519 6.31e-12 60.8
Msa0344920 AT2G43200.1 59.184 49 19 1 1 48 471 519 6.31e-12 60.8
Msa0344920 AT3G10200.1 56.250 48 21 0 1 48 444 491 1.01e-11 60.1
Msa0344920 AT3G10200.2 56.250 48 21 0 1 48 444 491 1.02e-11 60.1
Msa0344920 AT5G04060.1 56.250 48 21 0 1 48 455 502 1.07e-11 60.1
Msa0344920 AT1G04430.1 56.250 48 21 0 1 48 464 511 3.34e-11 58.5
Msa0344920 AT1G04430.3 56.250 48 21 0 1 48 464 511 3.34e-11 58.5
Msa0344920 AT1G04430.2 56.250 48 21 0 1 48 464 511 3.34e-11 58.5

Find 171 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCCAATTATTCACATTT+TGG 0.089991 3_1:+3848544 Msa0344920:five_prime_UTR
CTATTGCGGAAAATAATTTA+AGG 0.198938 3_1:+3848592 Msa0344920:five_prime_UTR
TTGATATTCTCAGAAGATTT+TGG 0.217136 3_1:+3850539 Msa0344920:five_prime_UTR
CTCTGGTGTGGTTCTTATAT+TGG 0.220904 3_1:-3851191 None:intergenic
CTTAGATCCAAAAGCTATAA+TGG 0.230033 3_1:+3854404 Msa0344920:three_prime_UTR
TATCCCAAAATGTGAATAAT+TGG 0.240375 3_1:-3848548 None:intergenic
AGCAATATGGTGAAAGAAAA+TGG 0.245087 3_1:+3849927 Msa0344920:five_prime_UTR
GGGCAGCCGCGGCAAATGTC+TGG 0.292074 3_1:-3851272 None:intergenic
TGCAAATTGAGGCTTATATA+TGG 0.292804 3_1:+3853352 Msa0344920:CDS
ATCAAGAGGACAATAAATTA+TGG 0.301162 3_1:+3852415 Msa0344920:five_prime_UTR
CTATCTCATGCTACCATTGT+TGG 0.308689 3_1:+3853612 Msa0344920:CDS
GAGATGCCATCATCTTTAAC+AGG 0.318490 3_1:+3849384 Msa0344920:five_prime_UTR
TTCTTCCACAAAGAAAATTT+CGG 0.327903 3_1:+3847355 Msa0344920:five_prime_UTR
ACAATTGCTGACAACACTTT+AGG 0.337595 3_1:+3852582 Msa0344920:CDS
TTAGATCCAAAAGCTATAAT+GGG 0.358188 3_1:+3854405 Msa0344920:three_prime_UTR
GAGGGGATACTTTGATGTTA+TGG 0.363563 3_1:+3847746 Msa0344920:five_prime_UTR
TCCTCTTCCCATTGAGTTTG+CGG 0.367574 3_1:+3849295 Msa0344920:five_prime_UTR
CAAATAGCTGAGAAGTTAGA+AGG 0.389483 3_1:+3849953 Msa0344920:five_prime_UTR
GCTGCCAATGCAGCTGCATT+GGG 0.390710 3_1:+3854468 Msa0344920:three_prime_UTR
TCCACACACCTCACATCAAT+TGG 0.394399 3_1:+3848466 Msa0344920:five_prime_UTR
ATGGACATGAATGCAGGCTT+TGG 0.394536 3_1:+3852504 Msa0344920:CDS
TCTTTAACAGGGACTTTGCT+TGG 0.396893 3_1:+3849396 Msa0344920:five_prime_UTR
TACAGGATCGATCACTATCT+TGG 0.401089 3_1:+3850425 Msa0344920:intron
CACTAGATATCGGAATATAA+TGG 0.406226 3_1:+3852485 Msa0344920:exon
TGCTGCCAATGCAGCTGCAT+TGG 0.407547 3_1:+3854467 Msa0344920:three_prime_UTR
GATAAGAAAATTGTTGAAAC+TGG 0.410397 3_1:+3848505 Msa0344920:five_prime_UTR
GAAAATTTCGGCGGCGGTGG+TGG 0.410466 3_1:+3847367 Msa0344920:five_prime_UTR
ACTACATCCTCGAGTTTAAT+CGG 0.412521 3_1:-3851162 None:intergenic
ACCTTCATGGCTGCTTGAAA+TGG 0.413259 3_1:-3848701 None:intergenic
TTGCAATTGTCCCACCCCTT+TGG 0.416532 3_1:-3848945 None:intergenic
TTAATGCATGTTCATGTGAT+TGG 0.417004 3_1:-3849344 None:intergenic
GATGCACACGAAGATGAAAT+TGG 0.418146 3_1:-3854329 None:intergenic
CATCTAACATGTTAAATACT+AGG 0.419113 3_1:+3854348 Msa0344920:three_prime_UTR
CTTTAACAGGGACTTTGCTT+GGG 0.419659 3_1:+3849397 Msa0344920:five_prime_UTR
AAGAGAATCTCGGCGGCGGC+AGG 0.423359 3_1:+3847392 Msa0344920:five_prime_UTR
GGGAATGATAATGACATTGA+AGG 0.427964 3_1:+3854433 Msa0344920:three_prime_UTR
TCCAGCAACTTCACTTCTGC+TGG 0.428397 3_1:-3852308 None:intergenic
TCACTTCTGCTGGTTACCTC+AGG 0.428636 3_1:-3852298 None:intergenic
CATTGGGGAAGTAGTGATAA+TGG 0.434679 3_1:+3854484 Msa0344920:three_prime_UTR
TGCTGGTTACCTCAGGGATA+GGG 0.436916 3_1:-3852291 None:intergenic
GTCTGGGTTAAGCTGTCCTT+TGG 0.440910 3_1:-3851255 None:intergenic
CAACAATGGTAGCATGAGAT+AGG 0.448200 3_1:-3853611 None:intergenic
TTGATACGATTCAACTGTTA+CGG 0.449154 3_1:-3852397 None:intergenic
AGGTTACCTGCCACGTCCTT+CGG 0.449417 3_1:-3850564 None:intergenic
GTAATTCTGTACAATCTGAT+TGG 0.451846 3_1:+3848380 Msa0344920:intron
AGCTGAGAAGTTAGAAGGAA+GGG 0.452156 3_1:+3849958 Msa0344920:five_prime_UTR
CATCAATTGGAACAGCAGTT+AGG 0.454752 3_1:+3848479 Msa0344920:five_prime_UTR
CTTCCCCAATGCAGCTGCAT+TGG 0.458753 3_1:-3854472 None:intergenic
ATCTATGAAAGAGGTCTCAT+TGG 0.460262 3_1:+3852609 Msa0344920:CDS
ACGTCTTTAGCTATTCTAGC+AGG 0.462111 3_1:-3852370 None:intergenic
TGGATATGCAACACCTCCTC+TGG 0.463674 3_1:-3851208 None:intergenic
GAACAAATCACATACCTTCA+TGG 0.466673 3_1:-3848714 None:intergenic
ACCAGCAGAAGTGAAGTTGC+TGG 0.469933 3_1:+3852307 Msa0344920:five_prime_UTR
TTAGGTGTTATCTATGAAAG+AGG 0.473905 3_1:+3852600 Msa0344920:CDS
GCAATATGGTGAAAGAAAAT+GGG 0.474578 3_1:+3849928 Msa0344920:five_prime_UTR
GACATGAATGCAGGCTTTGG+AGG 0.475475 3_1:+3852507 Msa0344920:CDS
ATGATTAAAGGAAACTGATA+AGG 0.479594 3_1:+3849897 Msa0344920:intron
AAAGTCCCTGTTAAAGATGA+TGG 0.481757 3_1:-3849390 None:intergenic
TAAAGTGTTGTCAGCAATTG+TGG 0.482690 3_1:-3852580 None:intergenic
AACACAATCATCAGTCTCCT+TGG 0.485143 3_1:-3849055 None:intergenic
CTTTGCAGGAGTCACTCAAA+TGG 0.487638 3_1:+3853470 Msa0344920:intron
AAAGAAAATTTCGGCGGCGG+TGG 0.488570 3_1:+3847364 Msa0344920:five_prime_UTR
CTGCTGGTTACCTCAGGGAT+AGG 0.489415 3_1:-3852292 None:intergenic
TGATCGACACCACTAGATAT+CGG 0.489972 3_1:+3852475 Msa0344920:five_prime_UTR
ATAAGGTTGGTGAAGCAATA+TGG 0.490665 3_1:+3849914 Msa0344920:five_prime_UTR
TCATTGGTATTTATCATGAC+TGG 0.490759 3_1:+3852625 Msa0344920:CDS
CGGGGAGAAATGAAATTGAC+GGG 0.498235 3_1:+3847279 Msa0344920:five_prime_UTR
CTTCATAGATAATGCAAGAT+GGG 0.499428 3_1:+3851296 Msa0344920:five_prime_UTR
GTTCAAGCAACATGGTTGTA+AGG 0.502766 3_1:+3847773 Msa0344920:five_prime_UTR
AGAGAACGTAACAAATTGAC+GGG 0.504022 3_1:+3847221 Msa0344920:five_prime_UTR
TAATGTTAGCAGGTACCAAA+GGG 0.506277 3_1:+3848930 Msa0344920:intron
AAGTTAACTATTTACATGAC+AGG 0.508647 3_1:+3853658 Msa0344920:exon
GCATCTCCAAGACTCCTAGC+TGG 0.514709 3_1:-3849368 None:intergenic
ACCATTTCAAGCAGCCATGA+AGG 0.514906 3_1:+3848700 Msa0344920:five_prime_UTR
TAGATAATGCAAGATGGGAT+GGG 0.518772 3_1:+3851301 Msa0344920:five_prime_UTR
AGCAAAGTGTCAGTGCGTAA+TGG 0.520670 3_1:+3848973 Msa0344920:five_prime_UTR
GAGTTGAAGAAGCGCGTCTG+AGG 0.522997 3_1:+3847432 Msa0344920:five_prime_UTR
GGCAGCCGCGGCAAATGTCT+GGG 0.524804 3_1:-3851271 None:intergenic
AACGGTGGAACAAAATTGAC+GGG 0.528571 3_1:+3847260 Msa0344920:five_prime_UTR
TCATTTGCAGTTGCTACCAA+TGG 0.529211 3_1:+3854306 Msa0344920:intron
CTATCTTGGAAAAGAGCTTG+TGG 0.529498 3_1:+3850439 Msa0344920:five_prime_UTR
TACACTGCCACTTACTATTG+CGG 0.531677 3_1:+3848578 Msa0344920:five_prime_UTR
GAAATTGACGGGGAAAGAAA+AGG 0.531699 3_1:+3847290 Msa0344920:five_prime_UTR
TTAAAGGAAACTGATAAGGT+TGG 0.535969 3_1:+3849901 Msa0344920:intron
TTCAAGAGATAATTTGTCCA+AGG 0.536501 3_1:+3849038 Msa0344920:five_prime_UTR
ACGGGGAGAAATGAAATTGA+CGG 0.537328 3_1:+3847278 Msa0344920:five_prime_UTR
GGGAGGAAGGAGAAAGGAAA+CGG 0.537344 3_1:+3847242 Msa0344920:five_prime_UTR
GGAATGATAATGACATTGAA+GGG 0.537775 3_1:+3854434 Msa0344920:three_prime_UTR
TTGACGGGGAGGAAGGAGAA+AGG 0.539488 3_1:+3847236 Msa0344920:five_prime_UTR
AGAATTTAGATCATTCACTA+AGG 0.539887 3_1:+3848408 Msa0344920:five_prime_UTR
TAGCTGAGAAGTTAGAAGGA+AGG 0.540309 3_1:+3849957 Msa0344920:five_prime_UTR
CACAAAGAAAATTTCGGCGG+CGG 0.541757 3_1:+3847361 Msa0344920:five_prime_UTR
CTAATGTTAGCAGGTACCAA+AGG 0.542601 3_1:+3848929 Msa0344920:intron
ATTAACCCAGCTAGGAGTCT+TGG 0.544672 3_1:+3849362 Msa0344920:five_prime_UTR
GGAAAGAAAAGGAGGAATCA+AGG 0.548328 3_1:+3847301 Msa0344920:five_prime_UTR
ATAGATAATGCAAGATGGGA+TGG 0.550173 3_1:+3851300 Msa0344920:five_prime_UTR
ACTAAGGACATAGCTACCCT+TGG 0.552728 3_1:+3848424 Msa0344920:five_prime_UTR
AATATAATGGACATGAATGC+AGG 0.552897 3_1:+3852498 Msa0344920:exon
TCTCAAGCTCATTGTTGCAA+TGG 0.554056 3_1:+3849077 Msa0344920:five_prime_UTR
TTGGTACCGAAGGACGTGGC+AGG 0.554507 3_1:+3850558 Msa0344920:five_prime_UTR
AGTAGTGATAATGGCAATGA+GGG 0.555394 3_1:+3854493 Msa0344920:three_prime_UTR
GAGAAGTTAGAAGGAAGGGT+TGG 0.557009 3_1:+3849962 Msa0344920:five_prime_UTR
CAAAATGTGAATAATTGGCA+TGG 0.557216 3_1:-3848543 None:intergenic
TCTTCATAGATAATGCAAGA+TGG 0.568560 3_1:+3851295 Msa0344920:five_prime_UTR
ATGCAACACCTCCTCTGGTG+TGG 0.571539 3_1:-3851203 None:intergenic
CGTCTTTAGCTATTCTAGCA+GGG 0.573771 3_1:-3852369 None:intergenic
ATCTATGAAGAGGGCAGCCG+CGG 0.574298 3_1:-3851283 None:intergenic
GGGACTGCAAACAACCTAGC+AGG 0.575866 3_1:-3852349 None:intergenic
AGAGAATCTCGGCGGCGGCA+GGG 0.576739 3_1:+3847393 Msa0344920:five_prime_UTR
GGAGTCACTCAAATGGCACT+TGG 0.578405 3_1:+3853477 Msa0344920:intron
CACTTCTGCTGGTTACCTCA+GGG 0.578549 3_1:-3852297 None:intergenic
ACCGCAAACTCAATGGGAAG+AGG 0.580661 3_1:-3849296 None:intergenic
TGTTACTCTGTTGAACTCCA+AGG 0.584293 3_1:-3848441 None:intergenic
AATTGGAACAGCAGTTAGGA+AGG 0.585029 3_1:+3848483 Msa0344920:five_prime_UTR
CATTATATTCCGATATCTAG+TGG 0.586138 3_1:-3852484 None:intergenic
TCTGAGGATTGTGGTAATCA+TGG 0.586573 3_1:+3847448 Msa0344920:five_prime_UTR
AAACGGTGGAACAAAATTGA+CGG 0.586909 3_1:+3847259 Msa0344920:five_prime_UTR
TAACAAATTGACGGGGAGGA+AGG 0.587046 3_1:+3847229 Msa0344920:five_prime_UTR
CATCTCCAAGACTCCTAGCT+GGG 0.589057 3_1:-3849367 None:intergenic
TAATGACATTGAAGGGAGGA+AGG 0.589272 3_1:+3854441 Msa0344920:three_prime_UTR
GAGAGAACGTAACAAATTGA+CGG 0.590636 3_1:+3847220 Msa0344920:five_prime_UTR
CGGCGGCGGCAGGGATTGTG+CGG 0.594596 3_1:+3847402 Msa0344920:five_prime_UTR
AACAGTTGAATCGTATCAAG+AGG 0.599773 3_1:+3852401 Msa0344920:five_prime_UTR
AGATAATGCAAGATGGGATG+GGG 0.599941 3_1:+3851302 Msa0344920:five_prime_UTR
ATTGACGGGGAAAGAAAAGG+AGG 0.601079 3_1:+3847293 Msa0344920:five_prime_UTR
ATCTTGCATTATCTATGAAG+AGG 0.601254 3_1:-3851293 None:intergenic
TAATGGCAATGAGGGGTCGA+AGG 0.605324 3_1:+3854501 Msa0344920:three_prime_UTR
TGATGACAAAACTGTACCAA+AGG 0.605343 3_1:+3851239 Msa0344920:five_prime_UTR
TTGCGGAAAATAATTTAAGG+AGG 0.605859 3_1:+3848595 Msa0344920:five_prime_UTR
ACGAAGATGAAATTGGCCAT+TGG 0.607734 3_1:-3854322 None:intergenic
GGAGAAGAGAATCTCGGCGG+CGG 0.615480 3_1:+3847388 Msa0344920:five_prime_UTR
TCTTGCATTATCTATGAAGA+GGG 0.616374 3_1:-3851292 None:intergenic
GTTACTCTGTTGAACTCCAA+GGG 0.617553 3_1:-3848440 None:intergenic
GTTAGCAGGTACCAAAGGGG+TGG 0.618021 3_1:+3848934 Msa0344920:intron
GGTGGTGGAGAAGAGAATCT+CGG 0.623069 3_1:+3847382 Msa0344920:five_prime_UTR
TGATCTTGTTAAAGCAGCTG+AGG 0.629746 3_1:-3850022 None:intergenic
AAGTAGTGATAATGGCAATG+AGG 0.636419 3_1:+3854492 Msa0344920:three_prime_UTR
TCACAACTCGATGTCTCTCG+TGG 0.636462 3_1:+3848652 Msa0344920:five_prime_UTR
TATAAGAACCACACCAGAGG+AGG 0.636996 3_1:+3851195 Msa0344920:five_prime_UTR
TTAGCAGGTACCAAAGGGGT+GGG 0.638356 3_1:+3848935 Msa0344920:intron
ATGATAATGACATTGAAGGG+AGG 0.638674 3_1:+3854437 Msa0344920:three_prime_UTR
GAACATGCATTAACCCAGCT+AGG 0.642127 3_1:+3849354 Msa0344920:five_prime_UTR
AGAAGCGCGTCTGAGGATTG+TGG 0.648188 3_1:+3847439 Msa0344920:five_prime_UTR
TATGAGACCGATTAAACTCG+AGG 0.649881 3_1:+3851155 Msa0344920:five_prime_UTR
GCAAGCAGTGTAGAGAGCGA+TGG 0.650454 3_1:+3849984 Msa0344920:five_prime_UTR
TCCAATTGATGTGAGGTGTG+TGG 0.657683 3_1:-3848467 None:intergenic
TGATTGGAATGGTAGCTAAG+TGG 0.662300 3_1:-3849328 None:intergenic
TTCCACAAAGAAAATTTCGG+CGG 0.662432 3_1:+3847358 Msa0344920:five_prime_UTR
AGCAGAAGTGAAGTTGCTGG+AGG 0.665344 3_1:+3852310 Msa0344920:five_prime_UTR
GCATGTTCATGTGATTGGAA+TGG 0.665840 3_1:-3849339 None:intergenic
ATGGCTGAGTTCAAGCAACA+TGG 0.669427 3_1:+3847765 Msa0344920:five_prime_UTR
GGAAAGCATTACACACCAAG+AGG 0.670420 3_1:+3851346 Msa0344920:five_prime_UTR
CTGCTGTTCCAATTGATGTG+AGG 0.671345 3_1:-3848474 None:intergenic
ATGTATTGCCTCGACCACAA+AGG 0.674403 3_1:-3850503 None:intergenic
AACGTAACAAATTGACGGGG+AGG 0.675068 3_1:+3847225 Msa0344920:five_prime_UTR
AGATGCCATCATCTTTAACA+GGG 0.675085 3_1:+3849385 Msa0344920:five_prime_UTR
CAATATAAGAACCACACCAG+AGG 0.676256 3_1:+3851192 Msa0344920:five_prime_UTR
CTTAACCCAGACATTTGCCG+CGG 0.676329 3_1:+3851266 Msa0344920:five_prime_UTR
CTGCCAATGCAGCTGCATTG+GGG 0.678019 3_1:+3854469 Msa0344920:three_prime_UTR
TGCGTAATGGAAGTTGTCAG+TGG 0.682900 3_1:+3848986 Msa0344920:five_prime_UTR
GAAAAGGAGGAATCAAGGAA+CGG 0.684383 3_1:+3847306 Msa0344920:five_prime_UTR
AGGAAGGAGAAAGGAAACGG+TGG 0.688775 3_1:+3847245 Msa0344920:five_prime_UTR
TTGTGGAAGAACAGAGAACG+CGG 0.692429 3_1:-3847343 None:intergenic
ATTCAAGCAGTATCTGACTG+AGG 0.704574 3_1:+3850044 Msa0344920:five_prime_UTR
CTGCAAAATCCCTATCCCTG+AGG 0.730548 3_1:+3852282 Msa0344920:five_prime_UTR
GTAGTGATAATGGCAATGAG+GGG 0.736284 3_1:+3854494 Msa0344920:three_prime_UTR
GGGGAGAAATGAAATTGACG+GGG 0.748881 3_1:+3847280 Msa0344920:five_prime_UTR
AATGTTAGCAGGTACCAAAG+GGG 0.753582 3_1:+3848931 Msa0344920:intron
ACGGTGGAACAAAATTGACG+GGG 0.768970 3_1:+3847261 Msa0344920:five_prime_UTR
GAGAACGTAACAAATTGACG+GGG 0.776657 3_1:+3847222 Msa0344920:five_prime_UTR
GGTGGAGAAGAGAATCTCGG+CGG 0.777683 3_1:+3847385 Msa0344920:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAATACACTTTTTAAA+AGG - chr3_1:3847619-3847638 None:intergenic 10.0%
!!! TGTATTTATTTTTTGTTTAT+GGG + chr3_1:3847628-3847647 Msa0344920:intron 10.0%
!!! TTTTTTAAAAAACTTTTGTT+TGG + chr3_1:3849509-3849528 Msa0344920:intron 10.0%
!!! TTTTTAAAAAACTTTTGTTT+GGG + chr3_1:3849510-3849529 Msa0344920:intron 10.0%
!!! TGTTATTAATATGTTTTATT+TGG + chr3_1:3849870-3849889 Msa0344920:intron 10.0%
!!! AATTAATCATTTTTTAGTAT+AGG - chr3_1:3852719-3852738 None:intergenic 10.0%
!!! AATTTTTTTTATTACTTATG+TGG + chr3_1:3853964-3853983 Msa0344920:intron 10.0%
!!! TTTATACTTCAATTTTTTTT+TGG + chr3_1:3854022-3854041 Msa0344920:intron 10.0%
!!! TTATACTTCAATTTTTTTTT+GGG + chr3_1:3854023-3854042 Msa0344920:intron 10.0%
!!! GTGTATTTATTTTTTGTTTA+TGG + chr3_1:3847627-3847646 Msa0344920:intron 15.0%
!!! TTTGAATTTTTTGATGATTA+TGG + chr3_1:3847983-3848002 Msa0344920:intron 15.0%
!!! TTATATGTTTTCTTTGATTA+TGG + chr3_1:3848141-3848160 Msa0344920:intron 15.0%
!!! AATGTGTTTATTCTTTTTTT+GGG + chr3_1:3849256-3849275 Msa0344920:intron 15.0%
!!! TTTTGTTCTAATTATTTTTG+AGG + chr3_1:3849536-3849555 Msa0344920:intron 15.0%
!!! TTTTTTTTGAAGAAAAAAGA+GGG - chr3_1:3850732-3850751 None:intergenic 15.0%
!!! TTTTTTTTTGAAGAAAAAAG+AGG - chr3_1:3850733-3850752 None:intergenic 15.0%
!!! TGGTTATATACTTTTTTTAT+AGG + chr3_1:3850831-3850850 Msa0344920:intron 15.0%
!! TTTATAGGCAAATATTAATA+AGG + chr3_1:3850846-3850865 Msa0344920:intron 15.0%
!!! TGGTTATATACTTTTTTTAT+AGG + chr3_1:3850831-3850850 Msa0344920:intron 15.0%
!!! ATTTAAAACAGATGAATTTA+AGG - chr3_1:3851075-3851094 None:intergenic 15.0%
!!! TTCTTATTTTATATCAAATG+AGG - chr3_1:3851617-3851636 None:intergenic 15.0%
!! TTATCTAAATCACATAAATT+GGG - chr3_1:3852058-3852077 None:intergenic 15.0%
!! ATTATCTAAATCACATAAAT+TGG - chr3_1:3852059-3852078 None:intergenic 15.0%
!!! AAACTGATGATTATTTTAAA+TGG + chr3_1:3852743-3852762 Msa0344920:intron 15.0%
!!! TTTATGATATAGAAAGTTTT+TGG + chr3_1:3852812-3852831 Msa0344920:intron 15.0%
!!! ATAGAAAGTTTTTTGATTAT+AGG + chr3_1:3852903-3852922 Msa0344920:intron 15.0%
!!! GATGAATTTTATGTATTAAT+TGG + chr3_1:3852937-3852956 Msa0344920:intron 15.0%
!!! AATTAATTTTTTTGATAAGC+AGG - chr3_1:3853259-3853278 None:intergenic 15.0%
!!! TTATACAAAATGGTTTATTT+TGG + chr3_1:3853277-3853296 Msa0344920:intron 15.0%
!!! ATTTTTTTTCTTCATTTTTC+AGG + chr3_1:3853568-3853587 Msa0344920:intron 15.0%
!! TATATATATATACTTCGATT+TGG - chr3_1:3854548-3854567 None:intergenic 15.0%
!! TATTAATTTAGTGATGTTGT+TGG + chr3_1:3847704-3847723 Msa0344920:intron 20.0%
!!! ATATAAACCCTAATTTTCAT+GGG - chr3_1:3847871-3847890 None:intergenic 20.0%
!!! GAATTATATGTCTAATTTGT+TGG + chr3_1:3847919-3847938 Msa0344920:intron 20.0%
!! ATAGAATCTTATGATATTCA+TGG + chr3_1:3848087-3848106 Msa0344920:intron 20.0%
!!! CAACAAATTTTCTATATCAT+TGG - chr3_1:3848192-3848211 None:intergenic 20.0%
!! CAATGATATAGAAAATTTGT+TGG + chr3_1:3848190-3848209 Msa0344920:intron 20.0%
!!! TATAGAAAATTTGTTGGTTT+TGG + chr3_1:3848196-3848215 Msa0344920:intron 20.0%
!!! TTAATTGTTTTTTTTACTGC+AGG + chr3_1:3848760-3848779 Msa0344920:intron 20.0%
!!! ATTTCAAACATAAAAGCATT+TGG - chr3_1:3848846-3848865 None:intergenic 20.0%
!!! ATACTTTTGCATAATCTATA+TGG + chr3_1:3849013-3849032 Msa0344920:five_prime_UTR 20.0%
!!! CAATGTGTTTATTCTTTTTT+TGG + chr3_1:3849255-3849274 Msa0344920:intron 20.0%
!! ATAGAAAACATAAACATACA+TGG - chr3_1:3849427-3849446 None:intergenic 20.0%
!!! TTATTTTTGTGTTTTGATCA+AGG + chr3_1:3849770-3849789 Msa0344920:intron 20.0%
!! TTATTTGGTATGATGATTAA+AGG + chr3_1:3849885-3849904 Msa0344920:intron 20.0%
!!! TCTATTTTCATAAGCTATAT+TGG + chr3_1:3850216-3850235 Msa0344920:intron 20.0%
!!! GTAAAGTGCTTTATTTAAAA+TGG + chr3_1:3850393-3850412 Msa0344920:intron 20.0%
!! TAAAATGGAAAACATTATAC+AGG + chr3_1:3850408-3850427 Msa0344920:intron 20.0%
!! CAAAAATTAGATTTGAGAAT+CGG - chr3_1:3850481-3850500 None:intergenic 20.0%
!!! CACTTTTTATGATCTTAAAA+TGG + chr3_1:3850607-3850626 Msa0344920:intron 20.0%
!!! TTTCTACTTATATTTAAGGT+CGG - chr3_1:3850930-3850949 None:intergenic 20.0%
!! AACCTTTCTACTTATATTTA+AGG - chr3_1:3850934-3850953 None:intergenic 20.0%
!!! GATACTTTATTTAGTACAAA+GGG - chr3_1:3851491-3851510 None:intergenic 20.0%
!!! AGATTTTTAAGTATTTGAGA+TGG + chr3_1:3851789-3851808 Msa0344920:intron 20.0%
!!! TTTTTTTTTGCTAAAGTAGA+CGG + chr3_1:3851928-3851947 Msa0344920:intron 20.0%
!! GATCTAGAAAACAATATTAT+CGG + chr3_1:3851962-3851981 Msa0344920:intron 20.0%
!!! TATAATCATTTGTTGTTAGA+CGG + chr3_1:3852146-3852165 Msa0344920:intron 20.0%
!! TCATGCTAAAAAATTTGTAA+TGG + chr3_1:3852238-3852257 Msa0344920:intron 20.0%
!! AAGAACCTAATATGATAAAT+TGG + chr3_1:3853097-3853116 Msa0344920:intron 20.0%
!! TGTATCCAATTTATCATATT+AGG - chr3_1:3853105-3853124 None:intergenic 20.0%
!!! AACAAAATGAGTGTTATTAA+AGG + chr3_1:3853796-3853815 Msa0344920:intron 20.0%
!!! ACAAAATGAGTGTTATTAAA+GGG + chr3_1:3853797-3853816 Msa0344920:intron 20.0%
!! TTCTTTATTCTTCAAATGAA+TGG + chr3_1:3853850-3853869 Msa0344920:intron 20.0%
!! TAATAATTAAGATGCTTAAG+TGG - chr3_1:3854083-3854102 None:intergenic 20.0%
!!! TCATTGGTAACATTTTTAAT+TGG + chr3_1:3854208-3854227 Msa0344920:intron 20.0%
! TTCTTCCACAAAGAAAATTT+CGG + chr3_1:3847355-3847374 Msa0344920:five_prime_UTR 25.0%
!! GTAATTGATGTGAATTTTTC+AGG + chr3_1:3847571-3847590 Msa0344920:five_prime_UTR 25.0%
!!! TTATGGGTTTTGTTTTAGAA+AGG + chr3_1:3847644-3847663 Msa0344920:intron 25.0%
!!! TATGGGTTTTGTTTTAGAAA+GGG + chr3_1:3847645-3847664 Msa0344920:intron 25.0%
!! CATATAAACCCTAATTTTCA+TGG - chr3_1:3847872-3847891 None:intergenic 25.0%
! AAATTAGGGTTTATATGAGT+TGG + chr3_1:3847875-3847894 Msa0344920:intron 25.0%
!! GTTGGATTCAATATATCTTT+TGG + chr3_1:3847893-3847912 Msa0344920:intron 25.0%
!! GATTCAATATATCTTTTGGT+TGG + chr3_1:3847897-3847916 Msa0344920:intron 25.0%
! AAAATTCAAAACCATCAATC+CGG - chr3_1:3847973-3847992 None:intergenic 25.0%
! AGAATTTAGATCATTCACTA+AGG + chr3_1:3848408-3848427 Msa0344920:five_prime_UTR 25.0%
! GATAAGAAAATTGTTGAAAC+TGG + chr3_1:3848505-3848524 Msa0344920:five_prime_UTR 25.0%
!! ATGCCAATTATTCACATTTT+GGG + chr3_1:3848545-3848564 Msa0344920:five_prime_UTR 25.0%
! TATCCCAAAATGTGAATAAT+TGG - chr3_1:3848551-3848570 None:intergenic 25.0%
! CTATTGCGGAAAATAATTTA+AGG + chr3_1:3848592-3848611 Msa0344920:five_prime_UTR 25.0%
!!! AAAAAGACAGTTTTCTAGAA+AGG - chr3_1:3848741-3848760 None:intergenic 25.0%
!!! CACCAGATTTTTTTATAACA+GGG - chr3_1:3848806-3848825 None:intergenic 25.0%
!!! ACACCAGATTTTTTTATAAC+AGG - chr3_1:3848807-3848826 None:intergenic 25.0%
! TTCTGTTACTAGAAATAGAA+AGG + chr3_1:3848871-3848890 Msa0344920:intron 25.0%
! TCTGTTACTAGAAATAGAAA+GGG + chr3_1:3848872-3848891 Msa0344920:intron 25.0%
! AATTGAATTCTAATGTTAGC+AGG + chr3_1:3848920-3848939 Msa0344920:intron 25.0%
! CTAATAAAGTTAACAGCAAA+AGG - chr3_1:3849143-3849162 None:intergenic 25.0%
!!! TCAAAAATATGGGTTGTTTT+CGG - chr3_1:3849622-3849641 None:intergenic 25.0%
! ATCAGAAACCTCAAAAATAT+GGG - chr3_1:3849632-3849651 None:intergenic 25.0%
! AGAACAAAATATGAAATCCA+AGG - chr3_1:3849698-3849717 None:intergenic 25.0%
! ATGATTAAAGGAAACTGATA+AGG + chr3_1:3849897-3849916 Msa0344920:intron 25.0%
! ACTTATATGATAAGTGTGAA+TGG - chr3_1:3850129-3850148 None:intergenic 25.0%
!!! AACAATCTTAGAAGTGTTTA+TGG + chr3_1:3850307-3850326 Msa0344920:intron 25.0%
!! ATCTAATTTTTGAACCTTTG+TGG + chr3_1:3850489-3850508 Msa0344920:five_prime_UTR 25.0%
!! TTGATATTCTCAGAAGATTT+TGG + chr3_1:3850539-3850558 Msa0344920:five_prime_UTR 25.0%
! TGTATGTACTTTGACAATTA+TGG + chr3_1:3850662-3850681 Msa0344920:intron 25.0%
! CAAATATTAATAAGGTCTCA+TGG + chr3_1:3850854-3850873 Msa0344920:intron 25.0%
! GACCTTAAATATAAGTAGAA+AGG + chr3_1:3850929-3850948 Msa0344920:intron 25.0%
!! ACAAATACATGTACCTTTTT+CGG + chr3_1:3850966-3850985 Msa0344920:intron 25.0%
!!! ACCTTTTTCGGTTAAATATA+AGG + chr3_1:3850978-3850997 Msa0344920:intron 25.0%
!! CGATACTTTATTTAGTACAA+AGG - chr3_1:3851492-3851511 None:intergenic 25.0%
!! ATACCTACTATTGACTATAT+TGG - chr3_1:3851515-3851534 None:intergenic 25.0%
!! TCTCAATGACTACAAAATTT+TGG + chr3_1:3851578-3851597 Msa0344920:intron 25.0%
!! CAATATTATCGGCATTTTTA+TGG + chr3_1:3851973-3851992 Msa0344920:intron 25.0%
! GATTATAAGTATAAAGATCC+AGG - chr3_1:3852133-3852152 None:intergenic 25.0%
! TTCTTATAATTCCACGATTT+CGG + chr3_1:3852186-3852205 Msa0344920:intron 25.0%
! GCTAAAAAATTTGTAATGGT+AGG + chr3_1:3852242-3852261 Msa0344920:intron 25.0%
! TAATGGTAGGTACAAAAAAA+TGG + chr3_1:3852255-3852274 Msa0344920:intron 25.0%
! ATCAAGAGGACAATAAATTA+TGG + chr3_1:3852415-3852434 Msa0344920:five_prime_UTR 25.0%
!!! AAAGTTTTTGGATCATAGTA+AGG + chr3_1:3852824-3852843 Msa0344920:intron 25.0%
! TTATGTATTAATTGGTGAGA+CGG + chr3_1:3852945-3852964 Msa0344920:intron 25.0%
! TCTGAGAAAATTAGTGAAAT+TGG - chr3_1:3853022-3853041 None:intergenic 25.0%
!! TCACTAATTTTCTCAGAATT+TGG + chr3_1:3853025-3853044 Msa0344920:intron 25.0%
!! TTCAAATATTTTTCCTCTCA+AGG - chr3_1:3853078-3853097 None:intergenic 25.0%
! AAGTTAACTATTTACATGAC+AGG + chr3_1:3853658-3853677 Msa0344920:exon 25.0%
! CTACACTTAAATTATCTCTT+TGG - chr3_1:3853719-3853738 None:intergenic 25.0%
! AAGAGATAATTTAAGTGTAG+TGG + chr3_1:3853719-3853738 Msa0344920:intron 25.0%
! TTTATTCTTCAAATGAATGG+TGG + chr3_1:3853853-3853872 Msa0344920:intron 25.0%
! AACAATGTTCATCACAATAA+TGG - chr3_1:3854053-3854072 None:intergenic 25.0%
! TGCATTTAATGAACATTGTT+TGG + chr3_1:3854245-3854264 Msa0344920:intron 25.0%
! CATCTAACATGTTAAATACT+AGG + chr3_1:3854348-3854367 Msa0344920:three_prime_UTR 25.0%
! TTAGATCCAAAAGCTATAAT+GGG + chr3_1:3854405-3854424 Msa0344920:three_prime_UTR 25.0%
!!! AAAAGCTATAATGGGTTTTT+GGG + chr3_1:3854413-3854432 Msa0344920:three_prime_UTR 25.0%
! CATCATGCATGTTAATTTTG+AGG + chr3_1:3847482-3847501 Msa0344920:five_prime_UTR 30.0%
CTAAAAAAAACTGAAGAAGC+TGG - chr3_1:3847538-3847557 None:intergenic 30.0%
!!! CAGCTTCTTCAGTTTTTTTT+AGG + chr3_1:3847536-3847555 Msa0344920:five_prime_UTR 30.0%
TGACAATTCCCATGAAAATT+AGG + chr3_1:3847860-3847879 Msa0344920:intron 30.0%
GACAATTCCCATGAAAATTA+GGG + chr3_1:3847861-3847880 Msa0344920:intron 30.0%
!! AATTTGTTGGCTTTCTCATT+TGG + chr3_1:3847932-3847951 Msa0344920:intron 30.0%
! TTCATGGTTCATGTGTATTT+TGG + chr3_1:3848103-3848122 Msa0344920:intron 30.0%
AGATTGTACAGAATTACTGA+TGG - chr3_1:3848377-3848396 None:intergenic 30.0%
GTAATTCTGTACAATCTGAT+TGG + chr3_1:3848380-3848399 Msa0344920:intron 30.0%
CAAAATGTGAATAATTGGCA+TGG - chr3_1:3848546-3848565 None:intergenic 30.0%
! CATGCCAATTATTCACATTT+TGG + chr3_1:3848544-3848563 Msa0344920:five_prime_UTR 30.0%
! TTATTTTCCGCAATAGTAAG+TGG - chr3_1:3848588-3848607 None:intergenic 30.0%
TTGCGGAAAATAATTTAAGG+AGG + chr3_1:3848595-3848614 Msa0344920:five_prime_UTR 30.0%
GTCCCTGTTATAAAAAAATC+TGG + chr3_1:3848801-3848820 Msa0344920:intron 30.0%
! TTCAAGAGATAATTTGTCCA+AGG + chr3_1:3849038-3849057 Msa0344920:five_prime_UTR 30.0%
!! TTTTTGGGAACTATAGATCT+TGG + chr3_1:3849271-3849290 Msa0344920:intron 30.0%
TTAATGCATGTTCATGTGAT+TGG - chr3_1:3849347-3849366 None:intergenic 30.0%
CTGTCTACATCATGAAAATA+AGG - chr3_1:3849452-3849471 None:intergenic 30.0%
!! GAAAACAACCCATATTTTTG+AGG + chr3_1:3849621-3849640 Msa0344920:intron 30.0%
CATCAGAAACCTCAAAAATA+TGG - chr3_1:3849633-3849652 None:intergenic 30.0%
TTTCACTTATTTGAAAGCCT+TGG + chr3_1:3849678-3849697 Msa0344920:intron 30.0%
!! TCTTTGCAATTCTGTTGTTT+TGG + chr3_1:3849715-3849734 Msa0344920:intron 30.0%
!!! ATTCTGTTGTTTTGGTCATT+TGG + chr3_1:3849723-3849742 Msa0344920:intron 30.0%
!!! TTGGTCATTTGGTTTTGTAT+TGG + chr3_1:3849734-3849753 Msa0344920:intron 30.0%
!!! TTGTGTTTTGATCAAGGTTT+TGG + chr3_1:3849776-3849795 Msa0344920:intron 30.0%
!!! TGTGTTTTGATCAAGGTTTT+GGG + chr3_1:3849777-3849796 Msa0344920:intron 30.0%
TTAAAGGAAACTGATAAGGT+TGG + chr3_1:3849901-3849920 Msa0344920:intron 30.0%
AGCAATATGGTGAAAGAAAA+TGG + chr3_1:3849927-3849946 Msa0344920:five_prime_UTR 30.0%
GCAATATGGTGAAAGAAAAT+GGG + chr3_1:3849928-3849947 Msa0344920:five_prime_UTR 30.0%
TGACTGTGTTTGGATATAAT+AGG + chr3_1:3850095-3850114 Msa0344920:intron 30.0%
TAATTAGACCATGTTTGGAT+TGG - chr3_1:3850354-3850373 None:intergenic 30.0%
ACAGATAATTAGACCATGTT+TGG - chr3_1:3850359-3850378 None:intergenic 30.0%
! AAAAAGTGTAAATGCTGCAA+AGG - chr3_1:3850595-3850614 None:intergenic 30.0%
ATTGTCAAAGTACATACACA+TGG - chr3_1:3850660-3850679 None:intergenic 30.0%
AGAGGACATTAGAAATGAAA+AGG + chr3_1:3850801-3850820 Msa0344920:intron 30.0%
AGAAATGAAAAGGTCTCATA+TGG + chr3_1:3850811-3850830 Msa0344920:intron 30.0%
! TACTTATATTTAAGGTCGGA+GGG - chr3_1:3850926-3850945 None:intergenic 30.0%
GCCTTATATTTAACCGAAAA+AGG - chr3_1:3850982-3851001 None:intergenic 30.0%
CATGACTTTCAATTGCTTAA+TGG + chr3_1:3851108-3851127 Msa0344920:intron 30.0%
!! TACAGTTTTGTCATCAATGT+AGG - chr3_1:3851235-3851254 None:intergenic 30.0%
TCTTGCATTATCTATGAAGA+GGG - chr3_1:3851295-3851314 None:intergenic 30.0%
ATCTTGCATTATCTATGAAG+AGG - chr3_1:3851296-3851315 None:intergenic 30.0%
TCTTCATAGATAATGCAAGA+TGG + chr3_1:3851295-3851314 Msa0344920:five_prime_UTR 30.0%
CTTCATAGATAATGCAAGAT+GGG + chr3_1:3851296-3851315 Msa0344920:five_prime_UTR 30.0%
!!! TACCTTTTTTTATGAAGGCT+GGG + chr3_1:3851325-3851344 Msa0344920:five_prime_UTR 30.0%
TGTATTCTGTATTGTGACAT+TGG - chr3_1:3851557-3851576 None:intergenic 30.0%
!! CTTGTTATTATGCATCAGAT+AGG - chr3_1:3851759-3851778 None:intergenic 30.0%
TAACCAAGAAACACTTATTC+TGG - chr3_1:3851901-3851920 None:intergenic 30.0%
! TAGATAATGCTGATGATGTT+TGG + chr3_1:3852071-3852090 Msa0344920:intron 30.0%
AATTGAAAAAGTTTCCTGCT+AGG + chr3_1:3852335-3852354 Msa0344920:five_prime_UTR 30.0%
TTGATACGATTCAACTGTTA+CGG - chr3_1:3852400-3852419 None:intergenic 30.0%
CATTATATTCCGATATCTAG+TGG - chr3_1:3852487-3852506 None:intergenic 30.0%
CACTAGATATCGGAATATAA+TGG + chr3_1:3852485-3852504 Msa0344920:exon 30.0%
!! AATATAATGGACATGAATGC+AGG + chr3_1:3852498-3852517 Msa0344920:exon 30.0%
! CCAAGATTTTTGTGATTCAA+GGG - chr3_1:3852544-3852563 None:intergenic 30.0%
CCTTGAATCACAAAAATCTT+GGG + chr3_1:3852542-3852561 Msa0344920:CDS 30.0%
! TTAGGTGTTATCTATGAAAG+AGG + chr3_1:3852600-3852619 Msa0344920:CDS 30.0%
TCATTGGTATTTATCATGAC+TGG + chr3_1:3852625-3852644 Msa0344920:CDS 30.0%
! TTTTGAACAATTCCAGTACA+AGG + chr3_1:3852775-3852794 Msa0344920:intron 30.0%
CAAATATATGTACCTTGTAC+TGG - chr3_1:3852790-3852809 None:intergenic 30.0%
TTCAATAACACAAAGTTAGC+TGG - chr3_1:3853174-3853193 None:intergenic 30.0%
! GTGTTATTGAATGCCTAATA+TGG + chr3_1:3853183-3853202 Msa0344920:intron 30.0%
ATTATGCAACTCACCATATT+AGG - chr3_1:3853199-3853218 None:intergenic 30.0%
!!! CAAAATGGTTTATTTTGGCT+TGG + chr3_1:3853282-3853301 Msa0344920:intron 30.0%
AATTTGGATGCTTAATTACC+AGG + chr3_1:3853320-3853339 Msa0344920:intron 30.0%
!! CAATTTGCAATCATTTTTCC+TGG - chr3_1:3853341-3853360 None:intergenic 30.0%
GGAAAAATGATTGCAAATTG+AGG + chr3_1:3853341-3853360 Msa0344920:intron 30.0%
TGCAAATTGAGGCTTATATA+TGG + chr3_1:3853352-3853371 Msa0344920:CDS 30.0%
!!! GTTTTAAGGTAAACTACCAT+TGG + chr3_1:3853501-3853520 Msa0344920:intron 30.0%
!!! TTTTCTTCATTTTTCAGGCT+TGG + chr3_1:3853573-3853592 Msa0344920:intron 30.0%
ATTAAGATGCTTAAGTGGTT+TGG - chr3_1:3854078-3854097 None:intergenic 30.0%
!!! ATCACTTCTTTTTTGCTCAT+TGG + chr3_1:3854192-3854211 Msa0344920:intron 30.0%
! CATTATAGCTTTTGGATCTA+AGG - chr3_1:3854406-3854425 None:intergenic 30.0%
CTTAGATCCAAAAGCTATAA+TGG + chr3_1:3854404-3854423 Msa0344920:three_prime_UTR 30.0%
! CAAAAACCCATTATAGCTTT+TGG - chr3_1:3854414-3854433 None:intergenic 30.0%
!!! CAAAAGCTATAATGGGTTTT+TGG + chr3_1:3854412-3854431 Msa0344920:three_prime_UTR 30.0%
! GGAATGATAATGACATTGAA+GGG + chr3_1:3854434-3854453 Msa0344920:three_prime_UTR 30.0%
GAGAGAACGTAACAAATTGA+CGG + chr3_1:3847220-3847239 Msa0344920:five_prime_UTR 35.0%
AGAGAACGTAACAAATTGAC+GGG + chr3_1:3847221-3847240 Msa0344920:five_prime_UTR 35.0%
AAACGGTGGAACAAAATTGA+CGG + chr3_1:3847259-3847278 Msa0344920:five_prime_UTR 35.0%
TTCCACAAAGAAAATTTCGG+CGG + chr3_1:3847358-3847377 Msa0344920:five_prime_UTR 35.0%
!! AGTTTTGTGCAGAAATGAAG+AGG + chr3_1:3847727-3847746 Msa0344920:intron 35.0%
! GTTTTGTGCAGAAATGAAGA+GGG + chr3_1:3847728-3847747 Msa0344920:intron 35.0%
! TTTTGTGCAGAAATGAAGAG+GGG + chr3_1:3847729-3847748 Msa0344920:intron 35.0%
!!! TCATGTGTATTTTGGTGAGT+TGG + chr3_1:3848111-3848130 Msa0344920:intron 35.0%
GAACAAATCACATACCTTCA+TGG - chr3_1:3848717-3848736 None:intergenic 35.0%
TAATGTTAGCAGGTACCAAA+GGG + chr3_1:3848930-3848949 Msa0344920:intron 35.0%
AAAAACACCGCAAACTCAAT+GGG - chr3_1:3849305-3849324 None:intergenic 35.0%
AGATGCCATCATCTTTAACA+GGG + chr3_1:3849385-3849404 Msa0344920:five_prime_UTR 35.0%
AAAGTCCCTGTTAAAGATGA+TGG - chr3_1:3849393-3849412 None:intergenic 35.0%
!! ATAAGGTTGGTGAAGCAATA+TGG + chr3_1:3849914-3849933 Msa0344920:five_prime_UTR 35.0%
CAAATAGCTGAGAAGTTAGA+AGG + chr3_1:3849953-3849972 Msa0344920:five_prime_UTR 35.0%
! TGACTGAGGATCAAATTTTC+AGG + chr3_1:3850058-3850077 Msa0344920:five_prime_UTR 35.0%
ATATCCAAACACAGTCAAAG+TGG - chr3_1:3850092-3850111 None:intergenic 35.0%
CAAACAATCCAATCCAAACA+TGG + chr3_1:3850343-3850362 Msa0344920:intron 35.0%
! CTACTTATATTTAAGGTCGG+AGG - chr3_1:3850927-3850946 None:intergenic 35.0%
! TCAATTGCTTAATGGATGTC+AGG + chr3_1:3851116-3851135 Msa0344920:intron 35.0%
ACTACATCCTCGAGTTTAAT+CGG - chr3_1:3851165-3851184 None:intergenic 35.0%
! AAACTCGAGGATGTAGTTTT+AGG + chr3_1:3851168-3851187 Msa0344920:five_prime_UTR 35.0%
TGATGACAAAACTGTACCAA+AGG + chr3_1:3851239-3851258 Msa0344920:five_prime_UTR 35.0%
ATAGATAATGCAAGATGGGA+TGG + chr3_1:3851300-3851319 Msa0344920:five_prime_UTR 35.0%
TAGATAATGCAAGATGGGAT+GGG + chr3_1:3851301-3851320 Msa0344920:five_prime_UTR 35.0%
!!! TGGGGTACCTTTTTTTATGA+AGG + chr3_1:3851320-3851339 Msa0344920:five_prime_UTR 35.0%
!!! GTACCTTTTTTTATGAAGGC+TGG + chr3_1:3851324-3851343 Msa0344920:five_prime_UTR 35.0%
TTCCCAGCCTTCATAAAAAA+AGG - chr3_1:3851330-3851349 None:intergenic 35.0%
TATTCCTTTCACTTACCTCT+TGG - chr3_1:3851364-3851383 None:intergenic 35.0%
TAGCAGATCGTGAAAATTTG+CGG + chr3_1:3851405-3851424 Msa0344920:intron 35.0%
TCGCCAATATAGTCAATAGT+AGG + chr3_1:3851509-3851528 Msa0344920:intron 35.0%
!! TTGTGACATTGGTTTGATGT+TGG - chr3_1:3851546-3851565 None:intergenic 35.0%
GATCTCAGCTTAAAAGAGAT+GGG - chr3_1:3851851-3851870 None:intergenic 35.0%
TGATCTCAGCTTAAAAGAGA+TGG - chr3_1:3851852-3851871 None:intergenic 35.0%
! TCTCTTTTAAGCTGAGATCA+AGG + chr3_1:3851852-3851871 Msa0344920:intron 35.0%
! CTCTTTTAAGCTGAGATCAA+GGG + chr3_1:3851853-3851872 Msa0344920:intron 35.0%
ATGCCAGAATAAGTGTTTCT+TGG + chr3_1:3851895-3851914 Msa0344920:intron 35.0%
GACGTGTGTAAAAATGATCA+TGG - chr3_1:3852101-3852120 None:intergenic 35.0%
TGGTAGGTACAAAAAAATGG+AGG + chr3_1:3852258-3852277 Msa0344920:intron 35.0%
AACAGTTGAATCGTATCAAG+AGG + chr3_1:3852401-3852420 Msa0344920:five_prime_UTR 35.0%
CCCTTGAATCACAAAAATCT+TGG + chr3_1:3852541-3852560 Msa0344920:CDS 35.0%
! CCCAAGATTTTTGTGATTCA+AGG - chr3_1:3852545-3852564 None:intergenic 35.0%
AATCACAAAAATCTTGGGTG+AGG + chr3_1:3852547-3852566 Msa0344920:CDS 35.0%
!! TAAAGTGTTGTCAGCAATTG+TGG - chr3_1:3852583-3852602 None:intergenic 35.0%
ACAATTGCTGACAACACTTT+AGG + chr3_1:3852582-3852601 Msa0344920:CDS 35.0%
ATCTATGAAAGAGGTCTCAT+TGG + chr3_1:3852609-3852628 Msa0344920:CDS 35.0%
!!! GATTGCCTCTTTTTGAAATG+TGG + chr3_1:3852981-3853000 Msa0344920:intron 35.0%
! ACATTTTGCTAAACCTTGAG+AGG + chr3_1:3853062-3853081 Msa0344920:intron 35.0%
GCTGATTACGATAGAGAATT+TGG + chr3_1:3853304-3853323 Msa0344920:intron 35.0%
!!! GTACATGAGTCTTATTTTGC+AGG + chr3_1:3853388-3853407 Msa0344920:CDS 35.0%
!!! ATGAGTCTTATTTTGCAGGT+AGG + chr3_1:3853392-3853411 Msa0344920:intron 35.0%
!! AAAGCAAGAGAAAGGTATTC+AGG - chr3_1:3853438-3853457 None:intergenic 35.0%
TTTACTGCCAATTTCTTTGC+AGG + chr3_1:3853456-3853475 Msa0344920:intron 35.0%
! AAATGGCACTTGGAGTTTTA+AGG + chr3_1:3853487-3853506 Msa0344920:CDS 35.0%
AAGGTAAACTACCATTGGAT+TGG + chr3_1:3853506-3853525 Msa0344920:intron 35.0%
! CATGCATTTTACCAATCCAA+TGG - chr3_1:3853520-3853539 None:intergenic 35.0%
!! CATTGGATTGGTAAAATGCA+TGG + chr3_1:3853518-3853537 Msa0344920:intron 35.0%
! TGAGTGTTATTAAAGGGTGT+TGG + chr3_1:3853803-3853822 Msa0344920:intron 35.0%
!! TTATTAAAGGGTGTTGGTCT+TGG + chr3_1:3853809-3853828 Msa0344920:intron 35.0%
! CAAATGAATGGTGGAATGAT+TGG + chr3_1:3853862-3853881 Msa0344920:intron 35.0%
AGCCTATATTTGACACTTCT+AGG + chr3_1:3854123-3854142 Msa0344920:intron 35.0%
!! CTCCTAGAAGTGTCAAATAT+AGG - chr3_1:3854128-3854147 None:intergenic 35.0%
! GGGAATGATAATGACATTGA+AGG + chr3_1:3854433-3854452 Msa0344920:three_prime_UTR 35.0%
! ATGATAATGACATTGAAGGG+AGG + chr3_1:3854437-3854456 Msa0344920:three_prime_UTR 35.0%
!! AAGTAGTGATAATGGCAATG+AGG + chr3_1:3854492-3854511 Msa0344920:three_prime_UTR 35.0%
!! AGTAGTGATAATGGCAATGA+GGG + chr3_1:3854493-3854512 Msa0344920:three_prime_UTR 35.0%
GAGAACGTAACAAATTGACG+GGG + chr3_1:3847222-3847241 Msa0344920:five_prime_UTR 40.0%
AACGGTGGAACAAAATTGAC+GGG + chr3_1:3847260-3847279 Msa0344920:five_prime_UTR 40.0%
ACGGGGAGAAATGAAATTGA+CGG + chr3_1:3847278-3847297 Msa0344920:five_prime_UTR 40.0%
GAAATTGACGGGGAAAGAAA+AGG + chr3_1:3847290-3847309 Msa0344920:five_prime_UTR 40.0%
GGAAAGAAAAGGAGGAATCA+AGG + chr3_1:3847301-3847320 Msa0344920:five_prime_UTR 40.0%
GAAAAGGAGGAATCAAGGAA+CGG + chr3_1:3847306-3847325 Msa0344920:five_prime_UTR 40.0%
TCTGAGGATTGTGGTAATCA+TGG + chr3_1:3847448-3847467 Msa0344920:five_prime_UTR 40.0%
GAGGGGATACTTTGATGTTA+TGG + chr3_1:3847746-3847765 Msa0344920:five_prime_UTR 40.0%
GTTCAAGCAACATGGTTGTA+AGG + chr3_1:3847773-3847792 Msa0344920:five_prime_UTR 40.0%
TTGGTGCATCAAAATGCTTC+CGG + chr3_1:3847951-3847970 Msa0344920:intron 40.0%
TCAAAATGCTTCCGGATTGA+TGG + chr3_1:3847959-3847978 Msa0344920:intron 40.0%
TTGCTGTATCGAAATGCTTC+AGG + chr3_1:3848223-3848242 Msa0344920:intron 40.0%
! TCGAAATGCTTCAGGTTTGA+TGG + chr3_1:3848231-3848250 Msa0344920:intron 40.0%
GTTACTCTGTTGAACTCCAA+GGG - chr3_1:3848443-3848462 None:intergenic 40.0%
TGTTACTCTGTTGAACTCCA+AGG - chr3_1:3848444-3848463 None:intergenic 40.0%
CATCAATTGGAACAGCAGTT+AGG + chr3_1:3848479-3848498 Msa0344920:five_prime_UTR 40.0%
AATTGGAACAGCAGTTAGGA+AGG + chr3_1:3848483-3848502 Msa0344920:five_prime_UTR 40.0%
! TACACTGCCACTTACTATTG+CGG + chr3_1:3848578-3848597 Msa0344920:five_prime_UTR 40.0%
CTAATGTTAGCAGGTACCAA+AGG + chr3_1:3848929-3848948 Msa0344920:intron 40.0%
AATGTTAGCAGGTACCAAAG+GGG + chr3_1:3848931-3848950 Msa0344920:intron 40.0%
AACACAATCATCAGTCTCCT+TGG - chr3_1:3849058-3849077 None:intergenic 40.0%
TCTCAAGCTCATTGTTGCAA+TGG + chr3_1:3849077-3849096 Msa0344920:five_prime_UTR 40.0%
TAAATGATACCGCACTGAAG+AGG + chr3_1:3849192-3849211 Msa0344920:intron 40.0%
CAAAAACACCGCAAACTCAA+TGG - chr3_1:3849306-3849325 None:intergenic 40.0%
! CATTGAGTTTGCGGTGTTTT+TGG + chr3_1:3849304-3849323 Msa0344920:five_prime_UTR 40.0%
TGATTGGAATGGTAGCTAAG+TGG - chr3_1:3849331-3849350 None:intergenic 40.0%
GCATGTTCATGTGATTGGAA+TGG - chr3_1:3849342-3849361 None:intergenic 40.0%
GAGATGCCATCATCTTTAAC+AGG + chr3_1:3849384-3849403 Msa0344920:five_prime_UTR 40.0%
TCTTTAACAGGGACTTTGCT+TGG + chr3_1:3849396-3849415 Msa0344920:five_prime_UTR 40.0%
CTTTAACAGGGACTTTGCTT+GGG + chr3_1:3849397-3849416 Msa0344920:five_prime_UTR 40.0%
TAGCTGAGAAGTTAGAAGGA+AGG + chr3_1:3849957-3849976 Msa0344920:five_prime_UTR 40.0%
AGCTGAGAAGTTAGAAGGAA+GGG + chr3_1:3849958-3849977 Msa0344920:five_prime_UTR 40.0%
TGATCTTGTTAAAGCAGCTG+AGG - chr3_1:3850025-3850044 None:intergenic 40.0%
ATTCAAGCAGTATCTGACTG+AGG + chr3_1:3850044-3850063 Msa0344920:five_prime_UTR 40.0%
CTAACCACTTTGACTGTGTT+TGG + chr3_1:3850085-3850104 Msa0344920:intron 40.0%
!! AGATTGTTTGAAAGCGCTCA+TGG - chr3_1:3850295-3850314 None:intergenic 40.0%
!! CTTAGAAGTGTTTATGGCAG+TGG + chr3_1:3850313-3850332 Msa0344920:intron 40.0%
TACAGGATCGATCACTATCT+TGG + chr3_1:3850425-3850444 Msa0344920:intron 40.0%
CTATCTTGGAAAAGAGCTTG+TGG + chr3_1:3850439-3850458 Msa0344920:five_prime_UTR 40.0%
! TTTTTGAACCTTTGTGGTCG+AGG + chr3_1:3850495-3850514 Msa0344920:five_prime_UTR 40.0%
!! TCAGAAGATTTTGGTACCGA+AGG + chr3_1:3850548-3850567 Msa0344920:five_prime_UTR 40.0%
TAAATGCTGCAAAGGAAGAG+AGG - chr3_1:3850587-3850606 None:intergenic 40.0%
AATACTAGCCCTCTTTGCAA+TGG + chr3_1:3850756-3850775 Msa0344920:intron 40.0%
AATGGAAACCCCTGTTAGTT+TGG + chr3_1:3850774-3850793 Msa0344920:intron 40.0%
TCGGTTAAATATAAGGCCAG+AGG + chr3_1:3850985-3851004 Msa0344920:intron 40.0%
CTTCTAGCATATACATCCTC+TGG - chr3_1:3851004-3851023 None:intergenic 40.0%
TATGAGACCGATTAAACTCG+AGG + chr3_1:3851155-3851174 Msa0344920:five_prime_UTR 40.0%
CTCTGGTGTGGTTCTTATAT+TGG - chr3_1:3851194-3851213 None:intergenic 40.0%
CAATATAAGAACCACACCAG+AGG + chr3_1:3851192-3851211 Msa0344920:five_prime_UTR 40.0%
! GTTTTGTCATCAATGTAGGC+TGG - chr3_1:3851231-3851250 None:intergenic 40.0%
AGATAATGCAAGATGGGATG+GGG + chr3_1:3851302-3851321 Msa0344920:five_prime_UTR 40.0%
CGTCTTTAGCTATTCTAGCA+GGG - chr3_1:3852372-3852391 None:intergenic 40.0%
ACGTCTTTAGCTATTCTAGC+AGG - chr3_1:3852373-3852392 None:intergenic 40.0%
TGATCGACACCACTAGATAT+CGG + chr3_1:3852475-3852494 Msa0344920:five_prime_UTR 40.0%
!! TATAGGAAGCTGACTTGCAA+GGG - chr3_1:3852702-3852721 None:intergenic 40.0%
CCAGTCCACATTTCAAAAAG+AGG - chr3_1:3852989-3853008 None:intergenic 40.0%
!!! CCTCTTTTTGAAATGTGGAC+TGG + chr3_1:3852986-3853005 Msa0344920:intron 40.0%
!! TGAAATGTGGACTGGAGATT+TGG + chr3_1:3852994-3853013 Msa0344920:intron 40.0%
TGGCAGTAAAAGCAAGAGAA+AGG - chr3_1:3853446-3853465 None:intergenic 40.0%
AGTGACTCCTGCAAAGAAAT+TGG - chr3_1:3853466-3853485 None:intergenic 40.0%
TCTTGTCTCTGTGTATGCTT+TGG + chr3_1:3853542-3853561 Msa0344920:intron 40.0%
CAACAATGGTAGCATGAGAT+AGG - chr3_1:3853614-3853633 None:intergenic 40.0%
CTATCTCATGCTACCATTGT+TGG + chr3_1:3853612-3853631 Msa0344920:CDS 40.0%
!!! GATGTGTCGTTTTCCAACAA+TGG - chr3_1:3853628-3853647 None:intergenic 40.0%
! GACTTGAGAGTATGACATTG+AGG + chr3_1:3854271-3854290 Msa0344920:intron 40.0%
TCATTTGCAGTTGCTACCAA+TGG + chr3_1:3854306-3854325 Msa0344920:intron 40.0%
ACGAAGATGAAATTGGCCAT+TGG - chr3_1:3854325-3854344 None:intergenic 40.0%
GATGCACACGAAGATGAAAT+TGG - chr3_1:3854332-3854351 None:intergenic 40.0%
TAATGACATTGAAGGGAGGA+AGG + chr3_1:3854441-3854460 Msa0344920:three_prime_UTR 40.0%
CATTGGGGAAGTAGTGATAA+TGG + chr3_1:3854484-3854503 Msa0344920:three_prime_UTR 40.0%
!! GTAGTGATAATGGCAATGAG+GGG + chr3_1:3854494-3854513 Msa0344920:three_prime_UTR 40.0%
AACGTAACAAATTGACGGGG+AGG + chr3_1:3847225-3847244 Msa0344920:five_prime_UTR 45.0%
TAACAAATTGACGGGGAGGA+AGG + chr3_1:3847229-3847248 Msa0344920:five_prime_UTR 45.0%
ACGGTGGAACAAAATTGACG+GGG + chr3_1:3847261-3847280 Msa0344920:five_prime_UTR 45.0%
CGGGGAGAAATGAAATTGAC+GGG + chr3_1:3847279-3847298 Msa0344920:five_prime_UTR 45.0%
GGGGAGAAATGAAATTGACG+GGG + chr3_1:3847280-3847299 Msa0344920:five_prime_UTR 45.0%
ATTGACGGGGAAAGAAAAGG+AGG + chr3_1:3847293-3847312 Msa0344920:five_prime_UTR 45.0%
TTGTGGAAGAACAGAGAACG+CGG - chr3_1:3847346-3847365 None:intergenic 45.0%
CACAAAGAAAATTTCGGCGG+CGG + chr3_1:3847361-3847380 Msa0344920:five_prime_UTR 45.0%
ATGGCTGAGTTCAAGCAACA+TGG + chr3_1:3847765-3847784 Msa0344920:five_prime_UTR 45.0%
ACTAAGGACATAGCTACCCT+TGG + chr3_1:3848424-3848443 Msa0344920:five_prime_UTR 45.0%
TCCACACACCTCACATCAAT+TGG + chr3_1:3848466-3848485 Msa0344920:five_prime_UTR 45.0%
TCCAATTGATGTGAGGTGTG+TGG - chr3_1:3848470-3848489 None:intergenic 45.0%
CTGCTGTTCCAATTGATGTG+AGG - chr3_1:3848477-3848496 None:intergenic 45.0%
ACCATTTCAAGCAGCCATGA+AGG + chr3_1:3848700-3848719 Msa0344920:five_prime_UTR 45.0%
ACCTTCATGGCTGCTTGAAA+TGG - chr3_1:3848704-3848723 None:intergenic 45.0%
! AGCAAAGTGTCAGTGCGTAA+TGG + chr3_1:3848973-3848992 Msa0344920:five_prime_UTR 45.0%
! TGCGTAATGGAAGTTGTCAG+TGG + chr3_1:3848986-3849005 Msa0344920:five_prime_UTR 45.0%
TCCTCTTCCCATTGAGTTTG+CGG + chr3_1:3849295-3849314 Msa0344920:five_prime_UTR 45.0%
GAACATGCATTAACCCAGCT+AGG + chr3_1:3849354-3849373 Msa0344920:five_prime_UTR 45.0%
ATTAACCCAGCTAGGAGTCT+TGG + chr3_1:3849362-3849381 Msa0344920:five_prime_UTR 45.0%
GAGAAGTTAGAAGGAAGGGT+TGG + chr3_1:3849962-3849981 Msa0344920:five_prime_UTR 45.0%
ATGTATTGCCTCGACCACAA+AGG - chr3_1:3850506-3850525 None:intergenic 45.0%
AGGGGTTTCCATTGCAAAGA+GGG - chr3_1:3850767-3850786 None:intergenic 45.0%
CTCTGCATCCAAACTAACAG+GGG - chr3_1:3850785-3850804 None:intergenic 45.0%
CCTCTGCATCCAAACTAACA+GGG - chr3_1:3850786-3850805 None:intergenic 45.0%
TCCTCTGCATCCAAACTAAC+AGG - chr3_1:3850787-3850806 None:intergenic 45.0%
GACTCAGAGACTCATGGTTA+TGG + chr3_1:3851048-3851067 Msa0344920:intron 45.0%
! GCTTAATGGATGTCAGGTCA+AGG + chr3_1:3851122-3851141 Msa0344920:intron 45.0%
TATAAGAACCACACCAGAGG+AGG + chr3_1:3851195-3851214 Msa0344920:five_prime_UTR 45.0%
!! GGAAAGCATTACACACCAAG+AGG + chr3_1:3851346-3851365 Msa0344920:five_prime_UTR 45.0%
CACACCAAGAGGTAAGTGAA+AGG + chr3_1:3851357-3851376 Msa0344920:intron 45.0%
GAAAGAGCGATATCGCTATC+TGG + chr3_1:3851995-3852014 Msa0344920:intron 45.0%
ACACACGTCATTCAAACACC+TGG + chr3_1:3852112-3852131 Msa0344920:intron 45.0%
ATGGACATGAATGCAGGCTT+TGG + chr3_1:3852504-3852523 Msa0344920:CDS 45.0%
!! GTATAGGAAGCTGACTTGCA+AGG - chr3_1:3852703-3852722 None:intergenic 45.0%
CTTTGCAGGAGTCACTCAAA+TGG + chr3_1:3853470-3853489 Msa0344920:intron 45.0%
!! AAAAAATTAATTATACAAAA+TGG + chr3_1:3853267-3853286 Msa0344920:intron 5.0%
GGGAGGAAGGAGAAAGGAAA+CGG + chr3_1:3847242-3847261 Msa0344920:five_prime_UTR 50.0%
AGGAAGGAGAAAGGAAACGG+TGG + chr3_1:3847245-3847264 Msa0344920:five_prime_UTR 50.0%
! CGCCGCCGAAATTTTCTTTG+TGG - chr3_1:3847363-3847382 None:intergenic 50.0%
AAAGAAAATTTCGGCGGCGG+TGG + chr3_1:3847364-3847383 Msa0344920:five_prime_UTR 50.0%
!! GGTGGTGGAGAAGAGAATCT+CGG + chr3_1:3847382-3847401 Msa0344920:five_prime_UTR 50.0%
TCACAACTCGATGTCTCTCG+TGG + chr3_1:3848652-3848671 Msa0344920:five_prime_UTR 50.0%
TTAGCAGGTACCAAAGGGGT+GGG + chr3_1:3848935-3848954 Msa0344920:intron 50.0%
TTGCAATTGTCCCACCCCTT+TGG - chr3_1:3848948-3848967 None:intergenic 50.0%
ACCGCAAACTCAATGGGAAG+AGG - chr3_1:3849299-3849318 None:intergenic 50.0%
CATCTCCAAGACTCCTAGCT+GGG - chr3_1:3849370-3849389 None:intergenic 50.0%
!! GATTTTGGTACCGAAGGACG+TGG + chr3_1:3850554-3850573 Msa0344920:five_prime_UTR 50.0%
CAGGGGTTTCCATTGCAAAG+AGG - chr3_1:3850768-3850787 None:intergenic 50.0%
! CCCTGTTAGTTTGGATGCAG+AGG + chr3_1:3850783-3850802 Msa0344920:intron 50.0%
TCTCTGAGTCGTAGCTCAAG+TGG - chr3_1:3851038-3851057 None:intergenic 50.0%
AGCTACGACTCAGAGACTCA+TGG + chr3_1:3851042-3851061 Msa0344920:intron 50.0%
TGGATATGCAACACCTCCTC+TGG - chr3_1:3851211-3851230 None:intergenic 50.0%
GTCTGGGTTAAGCTGTCCTT+TGG - chr3_1:3851258-3851277 None:intergenic 50.0%
CTTAACCCAGACATTTGCCG+CGG + chr3_1:3851266-3851285 Msa0344920:five_prime_UTR 50.0%
AGAGCGATATCGCTATCTGG+AGG + chr3_1:3851998-3852017 Msa0344920:intron 50.0%
CTGCAAAATCCCTATCCCTG+AGG + chr3_1:3852282-3852301 Msa0344920:five_prime_UTR 50.0%
! TGCTGGTTACCTCAGGGATA+GGG - chr3_1:3852294-3852313 None:intergenic 50.0%
! CACTTCTGCTGGTTACCTCA+GGG - chr3_1:3852300-3852319 None:intergenic 50.0%
! TCACTTCTGCTGGTTACCTC+AGG - chr3_1:3852301-3852320 None:intergenic 50.0%
ACCAGCAGAAGTGAAGTTGC+TGG + chr3_1:3852307-3852326 Msa0344920:five_prime_UTR 50.0%
TCCAGCAACTTCACTTCTGC+TGG - chr3_1:3852311-3852330 None:intergenic 50.0%
AGCAGAAGTGAAGTTGCTGG+AGG + chr3_1:3852310-3852329 Msa0344920:five_prime_UTR 50.0%
! GACATGAATGCAGGCTTTGG+AGG + chr3_1:3852507-3852526 Msa0344920:CDS 50.0%
GGAGTCACTCAAATGGCACT+TGG + chr3_1:3853477-3853496 Msa0344920:intron 50.0%
!! GGGTGTTGGTCTTGGTTTAG+TGG + chr3_1:3853817-3853836 Msa0344920:intron 50.0%
TAATGGCAATGAGGGGTCGA+AGG + chr3_1:3854501-3854520 Msa0344920:three_prime_UTR 50.0%
TTGACGGGGAGGAAGGAGAA+AGG + chr3_1:3847236-3847255 Msa0344920:five_prime_UTR 55.0%
GGTGGAGAAGAGAATCTCGG+CGG + chr3_1:3847385-3847404 Msa0344920:five_prime_UTR 55.0%
! GAGTTGAAGAAGCGCGTCTG+AGG + chr3_1:3847432-3847451 Msa0344920:five_prime_UTR 55.0%
! AGAAGCGCGTCTGAGGATTG+TGG + chr3_1:3847439-3847458 Msa0344920:five_prime_UTR 55.0%
GTTAGCAGGTACCAAAGGGG+TGG + chr3_1:3848934-3848953 Msa0344920:intron 55.0%
GCATCTCCAAGACTCCTAGC+TGG - chr3_1:3849371-3849390 None:intergenic 55.0%
GCAAGCAGTGTAGAGAGCGA+TGG + chr3_1:3849984-3850003 Msa0344920:five_prime_UTR 55.0%
AGGTTACCTGCCACGTCCTT+CGG - chr3_1:3850567-3850586 None:intergenic 55.0%
ATGCAACACCTCCTCTGGTG+TGG - chr3_1:3851206-3851225 None:intergenic 55.0%
ATCTATGAAGAGGGCAGCCG+CGG - chr3_1:3851286-3851305 None:intergenic 55.0%
! CTGCTGGTTACCTCAGGGAT+AGG - chr3_1:3852295-3852314 None:intergenic 55.0%
GGGACTGCAAACAACCTAGC+AGG - chr3_1:3852352-3852371 None:intergenic 55.0%
TGCTGCCAATGCAGCTGCAT+TGG + chr3_1:3854467-3854486 Msa0344920:three_prime_UTR 55.0%
GCTGCCAATGCAGCTGCATT+GGG + chr3_1:3854468-3854487 Msa0344920:three_prime_UTR 55.0%
CTGCCAATGCAGCTGCATTG+GGG + chr3_1:3854469-3854488 Msa0344920:three_prime_UTR 55.0%
CTTCCCCAATGCAGCTGCAT+TGG - chr3_1:3854475-3854494 None:intergenic 55.0%
GAAAATTTCGGCGGCGGTGG+TGG + chr3_1:3847367-3847386 Msa0344920:five_prime_UTR 60.0%
GGAGAAGAGAATCTCGGCGG+CGG + chr3_1:3847388-3847407 Msa0344920:five_prime_UTR 60.0%
TACCGCACTGAAGAGGCTCG+AGG + chr3_1:3849199-3849218 Msa0344920:intron 60.0%
CTCCTCGAGCCTCTTCAGTG+CGG - chr3_1:3849204-3849223 None:intergenic 60.0%
! TTGGTACCGAAGGACGTGGC+AGG + chr3_1:3850558-3850577 Msa0344920:five_prime_UTR 60.0%
AAGAGAATCTCGGCGGCGGC+AGG + chr3_1:3847392-3847411 Msa0344920:five_prime_UTR 65.0%
AGAGAATCTCGGCGGCGGCA+GGG + chr3_1:3847393-3847412 Msa0344920:five_prime_UTR 65.0%
GGCAGCCGCGGCAAATGTCT+GGG - chr3_1:3851274-3851293 None:intergenic 65.0%
GGGCAGCCGCGGCAAATGTC+TGG - chr3_1:3851275-3851294 None:intergenic 70.0%
CGGCGGCGGCAGGGATTGTG+CGG + chr3_1:3847402-3847421 Msa0344920:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 3847217 3854610 3847217 ID=Msa0344920;Name=Msa0344920
chr3_1 mRNA 3847217 3854610 3847217 ID=Msa0344920-mRNA-1;Parent=Msa0344920;Name=Msa0344920-mRNA-1;_AED=0.24;_eAED=0.24;_QI=1864|0.83|0.84|0.92|0.41|0.30|13|315|103
chr3_1 exon 3847217 3847592 3847217 ID=Msa0344920-mRNA-1:exon:1209;Parent=Msa0344920-mRNA-1
chr3_1 exon 3847739 3847794 3847739 ID=Msa0344920-mRNA-1:exon:1210;Parent=Msa0344920-mRNA-1
chr3_1 exon 3848381 3848721 3848381 ID=Msa0344920-mRNA-1:exon:1211;Parent=Msa0344920-mRNA-1
chr3_1 exon 3848942 3849098 3848942 ID=Msa0344920-mRNA-1:exon:1212;Parent=Msa0344920-mRNA-1
chr3_1 exon 3849287 3849427 3849287 ID=Msa0344920-mRNA-1:exon:1213;Parent=Msa0344920-mRNA-1
chr3_1 exon 3849907 3850079 3849907 ID=Msa0344920-mRNA-1:exon:1214;Parent=Msa0344920-mRNA-1
chr3_1 exon 3850430 3850579 3850430 ID=Msa0344920-mRNA-1:exon:1215;Parent=Msa0344920-mRNA-1
chr3_1 exon 3851138 3851367 3851138 ID=Msa0344920-mRNA-1:exon:1216;Parent=Msa0344920-mRNA-1
chr3_1 exon 3852264 3852646 3852264 ID=Msa0344920-mRNA-1:exon:1217;Parent=Msa0344920-mRNA-1
chr3_1 exon 3853342 3853409 3853342 ID=Msa0344920-mRNA-1:exon:1218;Parent=Msa0344920-mRNA-1
chr3_1 exon 3853478 3853508 3853478 ID=Msa0344920-mRNA-1:exon:1219;Parent=Msa0344920-mRNA-1
chr3_1 exon 3853590 3853679 3853590 ID=Msa0344920-mRNA-1:exon:1220;Parent=Msa0344920-mRNA-1
chr3_1 exon 3854316 3854610 3854316 ID=Msa0344920-mRNA-1:exon:1221;Parent=Msa0344920-mRNA-1
chr3_1 five_prime_UTR 3847217 3847592 3847217 ID=Msa0344920-mRNA-1:five_prime_utr;Parent=Msa0344920-mRNA-1
chr3_1 five_prime_UTR 3847739 3847794 3847739 ID=Msa0344920-mRNA-1:five_prime_utr;Parent=Msa0344920-mRNA-1
chr3_1 five_prime_UTR 3848381 3848721 3848381 ID=Msa0344920-mRNA-1:five_prime_utr;Parent=Msa0344920-mRNA-1
chr3_1 five_prime_UTR 3848942 3849098 3848942 ID=Msa0344920-mRNA-1:five_prime_utr;Parent=Msa0344920-mRNA-1
chr3_1 five_prime_UTR 3849287 3849427 3849287 ID=Msa0344920-mRNA-1:five_prime_utr;Parent=Msa0344920-mRNA-1
chr3_1 five_prime_UTR 3849907 3850079 3849907 ID=Msa0344920-mRNA-1:five_prime_utr;Parent=Msa0344920-mRNA-1
chr3_1 five_prime_UTR 3850430 3850579 3850430 ID=Msa0344920-mRNA-1:five_prime_utr;Parent=Msa0344920-mRNA-1
chr3_1 five_prime_UTR 3851138 3851367 3851138 ID=Msa0344920-mRNA-1:five_prime_utr;Parent=Msa0344920-mRNA-1
chr3_1 five_prime_UTR 3852264 3852503 3852264 ID=Msa0344920-mRNA-1:five_prime_utr;Parent=Msa0344920-mRNA-1
chr3_1 CDS 3852504 3852646 3852504 ID=Msa0344920-mRNA-1:cds;Parent=Msa0344920-mRNA-1
chr3_1 CDS 3853342 3853409 3853342 ID=Msa0344920-mRNA-1:cds;Parent=Msa0344920-mRNA-1
chr3_1 CDS 3853478 3853508 3853478 ID=Msa0344920-mRNA-1:cds;Parent=Msa0344920-mRNA-1
chr3_1 CDS 3853590 3853659 3853590 ID=Msa0344920-mRNA-1:cds;Parent=Msa0344920-mRNA-1
chr3_1 three_prime_UTR 3853660 3853679 3853660 ID=Msa0344920-mRNA-1:three_prime_utr;Parent=Msa0344920-mRNA-1
chr3_1 three_prime_UTR 3854316 3854610 3854316 ID=Msa0344920-mRNA-1:three_prime_utr;Parent=Msa0344920-mRNA-1
Gene Sequence

>Msa0344920

ATGGACATGAATGCAGGCTTTGGAGGATTTGCAGCTGCCCTTGAATCACAAAAATCTTGGGTGAGGAATGATGTGTCCACAATTGCTGACAACACTTTAGGTGTTATCTATGAAAGAGGTCTCATTGGTATTTATCATGACTGGAAAAATGATTGCAAATTGAGGCTTATATATGGTTTTTCTCTGAATGTACATGAGTCTTATTTTGCAGGAGTCACTCAAATGGCACTTGGAGTTTTAAGGCTTGGTTTCTTGATTGACTTCCTATCTCATGCTACCATTGTTGGAAAACGACACATCGAAATAATATAA
Protein sequence

>Msa0344920

MDMNAGFGGFAAALESQKSWVRNDVSTIADNTLGVIYERGLIGIYHDWKNDCKLRLIYGFSLNVHESYFAGVTQMALGVLRLGFLIDFLSHATIVGKRHIEII*