Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398230 | RHN82447.1 | 85.714 | 49 | 7 | 0 | 24 | 72 | 492 | 540 | 2.95e-21 | 96.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398230 | sp|F4I4B6|EX84A_ARATH | 61.224 | 49 | 19 | 0 | 24 | 72 | 568 | 616 | 5.77e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398230 | A0A396KAQ8 | 85.714 | 49 | 7 | 0 | 24 | 72 | 492 | 540 | 1.41e-21 | 96.7 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0398230 | Msa0534080 | 0.813550 | 2.418322e-51 | -8.615850e-47 |
| Msa0398230 | Msa0659990 | 0.807377 | 5.207775e-50 | -8.615850e-47 |
| Msa0398230 | Msa0895310 | 0.811372 | 7.236272e-51 | -8.615850e-47 |
| Msa0398230 | Msa0921870 | 0.806696 | 7.257543e-50 | -8.615850e-47 |
| Msa0398230 | Msa1047860 | 0.844606 | 6.812266e-59 | -8.615850e-47 |
| Msa0398230 | Msa1057430 | 0.801132 | 1.040173e-48 | -8.615850e-47 |
| Msa0398230 | Msa1083880 | 0.805933 | 1.050556e-49 | -8.615850e-47 |
| Msa0398230 | Msa1297600 | 0.801296 | 9.627948e-49 | -8.615850e-47 |
| Msa0337510 | Msa0398230 | 0.803711 | 3.059894e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398230 | MtrunA17_Chr1g0210011 | 85.714 | 49 | 7 | 0 | 24 | 72 | 492 | 540 | 2.71e-25 | 96.7 |
| Msa0398230 | MtrunA17_Chr6g0471001 | 68.750 | 48 | 15 | 0 | 25 | 72 | 583 | 630 | 6.94e-18 | 75.9 |
| Msa0398230 | MtrunA17_Chr4g0000541 | 59.184 | 49 | 20 | 0 | 24 | 72 | 572 | 620 | 1.59e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398230 | AT1G10385.1 | 61.224 | 49 | 19 | 0 | 24 | 72 | 568 | 616 | 5.86e-14 | 65.1 |
Find 21 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAATGCTCAAATGTATT+TGG | 0.176146 | 3_2:+18898699 | Msa0398230:CDS |
| CTACAGGTTGAAGAGGATTT+TGG | 0.270337 | 3_2:+18897343 | Msa0398230:intron |
| AGATGCAATGCCTGCAATTC+TGG | 0.339003 | 3_2:-18899235 | None:intergenic |
| TTAAAGCTTACCAGAATTGC+AGG | 0.356186 | 3_2:+18899225 | Msa0398230:CDS |
| TGCTCAAATGTATTTGGATA+TGG | 0.360208 | 3_2:+18898705 | Msa0398230:CDS |
| CCCTCTCATCTTCCCTGCTC+TGG | 0.384528 | 3_2:-18897033 | None:intergenic |
| ATTGGAGAAGGAAACCATTC+AGG | 0.390426 | 3_2:-18898745 | None:intergenic |
| ATTTGGATATGGAGGACAAT+GGG | 0.404111 | 3_2:+18898716 | Msa0398230:CDS |
| TACATTTGAGCATTCAATAG+TGG | 0.454695 | 3_2:-18898694 | None:intergenic |
| ATGTTTGTGGTAGCCAGAGC+AGG | 0.465997 | 3_2:+18897020 | Msa0398230:CDS |
| AAAATGATTGATGATGTTTG+TGG | 0.543531 | 3_2:+18897007 | None:intergenic |
| CCAGAGCAGGGAAGATGAGA+GGG | 0.566974 | 3_2:+18897033 | Msa0398230:CDS |
| GCCAGAGCAGGGAAGATGAG+AGG | 0.579773 | 3_2:+18897032 | Msa0398230:CDS |
| TATTTGGATATGGAGGACAA+TGG | 0.581621 | 3_2:+18898715 | Msa0398230:CDS |
| ATCTGATGCATTTGTGTGAA+GGG | 0.584077 | 3_2:+18899254 | Msa0398230:exon |
| TTTGGATATGGAGGACAATG+GGG | 0.604747 | 3_2:+18898717 | Msa0398230:CDS |
| TCAAATGTATTTGGATATGG+AGG | 0.605535 | 3_2:+18898708 | Msa0398230:CDS |
| GAGCAGGGAAGATGAGAGGG+AGG | 0.607437 | 3_2:+18897036 | Msa0398230:CDS |
| CATCTGATGCATTTGTGTGA+AGG | 0.612023 | 3_2:+18899253 | Msa0398230:CDS |
| TGTTTGTGGTAGCCAGAGCA+GGG | 0.649361 | 3_2:+18897021 | Msa0398230:CDS |
| ACAATGGGGAGATACCTGAA+TGG | 0.664243 | 3_2:+18898731 | Msa0398230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAAAAAATTCAATTGTTT+GGG | + | chr3_2:18897123-18897142 | Msa0398230:intron | 15.0% |
| !! | TAAAAAAATTCAATTGTTTG+GGG | + | chr3_2:18897124-18897143 | Msa0398230:intron | 15.0% |
| !! | TTATAGAGAGAAAAATTATA+AGG | - | chr3_2:18898030-18898049 | None:intergenic | 15.0% |
| !!! | TATAATTTTTCTCTCTATAA+AGG | + | chr3_2:18898030-18898049 | Msa0398230:intron | 15.0% |
| !!! | AATTTATCTGAATTTGTTTA+TGG | + | chr3_2:18898474-18898493 | Msa0398230:intron | 15.0% |
| !! | ACAATTAAAAAGAAAATTAC+AGG | - | chr3_2:18898523-18898542 | None:intergenic | 15.0% |
| !! | CTAAAAAAATTCAATTGTTT+GGG | + | chr3_2:18897123-18897142 | Msa0398230:intron | 15.0% |
| !! | TAAAAAAATTCAATTGTTTG+GGG | + | chr3_2:18897124-18897143 | Msa0398230:intron | 15.0% |
| !! | TTATAGAGAGAAAAATTATA+AGG | - | chr3_2:18898030-18898049 | None:intergenic | 15.0% |
| !!! | TATAATTTTTCTCTCTATAA+AGG | + | chr3_2:18898030-18898049 | Msa0398230:intron | 15.0% |
| !!! | AATTTATCTGAATTTGTTTA+TGG | + | chr3_2:18898474-18898493 | Msa0398230:intron | 15.0% |
| !! | ACAATTAAAAAGAAAATTAC+AGG | - | chr3_2:18898523-18898542 | None:intergenic | 15.0% |
| !!! | CCAAACAATTGAATTTTTTT+AGG | - | chr3_2:18897125-18897144 | None:intergenic | 20.0% |
| !! | CCTAAAAAAATTCAATTGTT+TGG | + | chr3_2:18897122-18897141 | Msa0398230:intron | 20.0% |
| !!! | TGTTTTTTATTTTTCACTAC+AGG | + | chr3_2:18897327-18897346 | Msa0398230:intron | 20.0% |
| !!! | TGTAATTTGAGTTTAAATTG+AGG | + | chr3_2:18897501-18897520 | Msa0398230:intron | 20.0% |
| !! | CTATTGTTTACTTCTTTATA+TGG | + | chr3_2:18897745-18897764 | Msa0398230:intron | 20.0% |
| !! | AATAAATATGCAAAGTAGAA+TGG | + | chr3_2:18897842-18897861 | Msa0398230:intron | 20.0% |
| !!! | TTCCTTTTCATTATTTTAGT+GGG | + | chr3_2:18898162-18898181 | Msa0398230:intron | 20.0% |
| !! | GAATTTATTGAAATGTGAAT+TGG | + | chr3_2:18898312-18898331 | Msa0398230:intron | 20.0% |
| !! | AAATAAGAAGAAGAGAAAAA+AGG | - | chr3_2:18898442-18898461 | None:intergenic | 20.0% |
| !! | CAAGCATGATATATAAAATT+AGG | - | chr3_2:18898597-18898616 | None:intergenic | 20.0% |
| !!! | CTAATTTTATATATCATGCT+TGG | + | chr3_2:18898595-18898614 | Msa0398230:intron | 20.0% |
| !! | AGTGATAGTAATATAATCTA+TGG | + | chr3_2:18898882-18898901 | Msa0398230:intron | 20.0% |
| !!! | CCAAACAATTGAATTTTTTT+AGG | - | chr3_2:18897125-18897144 | None:intergenic | 20.0% |
| !! | CCTAAAAAAATTCAATTGTT+TGG | + | chr3_2:18897122-18897141 | Msa0398230:intron | 20.0% |
| !!! | TGTTTTTTATTTTTCACTAC+AGG | + | chr3_2:18897327-18897346 | Msa0398230:intron | 20.0% |
| !!! | TGTAATTTGAGTTTAAATTG+AGG | + | chr3_2:18897501-18897520 | Msa0398230:intron | 20.0% |
| !! | CTATTGTTTACTTCTTTATA+TGG | + | chr3_2:18897745-18897764 | Msa0398230:intron | 20.0% |
| !! | AATAAATATGCAAAGTAGAA+TGG | + | chr3_2:18897842-18897861 | Msa0398230:intron | 20.0% |
| !!! | TTCCTTTTCATTATTTTAGT+GGG | + | chr3_2:18898162-18898181 | Msa0398230:intron | 20.0% |
| !! | GAATTTATTGAAATGTGAAT+TGG | + | chr3_2:18898312-18898331 | Msa0398230:intron | 20.0% |
| !! | AAATAAGAAGAAGAGAAAAA+AGG | - | chr3_2:18898442-18898461 | None:intergenic | 20.0% |
| !! | CAAGCATGATATATAAAATT+AGG | - | chr3_2:18898597-18898616 | None:intergenic | 20.0% |
| !!! | CTAATTTTATATATCATGCT+TGG | + | chr3_2:18898595-18898614 | Msa0398230:intron | 20.0% |
| !! | AGTGATAGTAATATAATCTA+TGG | + | chr3_2:18898882-18898901 | Msa0398230:intron | 20.0% |
| ! | AATCAAAACTGAAATTGTAG+GGG | - | chr3_2:18897231-18897250 | None:intergenic | 25.0% |
| ! | GAATCAAAACTGAAATTGTA+GGG | - | chr3_2:18897232-18897251 | None:intergenic | 25.0% |
| ! | GATTAGTGACAATTTATGTT+TGG | + | chr3_2:18897267-18897286 | Msa0398230:intron | 25.0% |
| ! | TTATGCTAATTTCGTCAATA+GGG | + | chr3_2:18897400-18897419 | Msa0398230:intron | 25.0% |
| ! | AAAATTCGATCATTTAAGCA+AGG | - | chr3_2:18897772-18897791 | None:intergenic | 25.0% |
| ! | ATATAACATAACGACAAACT+CGG | - | chr3_2:18897805-18897824 | None:intergenic | 25.0% |
| ! | TTAACACAAATCAGAATAGT+TGG | - | chr3_2:18897968-18897987 | None:intergenic | 25.0% |
| ! | TAGAGAGAAAAATTATAAGG+AGG | - | chr3_2:18898027-18898046 | None:intergenic | 25.0% |
| !!! | CTTCCTTTTCATTATTTTAG+TGG | + | chr3_2:18898161-18898180 | Msa0398230:intron | 25.0% |
| ! | AACCCACTAAAATAATGAAA+AGG | - | chr3_2:18898167-18898186 | None:intergenic | 25.0% |
| ! | TTATTGAAATGTGAATTGGA+TGG | + | chr3_2:18898316-18898335 | Msa0398230:intron | 25.0% |
| ! | TTTGGAGGTTAATTTCTATT+TGG | + | chr3_2:18898644-18898663 | Msa0398230:intron | 25.0% |
| ! | ATTGAATGCTCAAATGTATT+TGG | + | chr3_2:18898699-18898718 | Msa0398230:CDS | 25.0% |
| ! | TGTTTGTTTACCTGAAAAAT+TGG | - | chr3_2:18898766-18898785 | None:intergenic | 25.0% |
| !!! | TTTTTCAGGTAAACAAACAA+AGG | + | chr3_2:18898767-18898786 | Msa0398230:intron | 25.0% |
| ! | CATTTCATATATTACTGTTC+AGG | + | chr3_2:18899194-18899213 | Msa0398230:intron | 25.0% |
| ! | AATCAAAACTGAAATTGTAG+GGG | - | chr3_2:18897231-18897250 | None:intergenic | 25.0% |
| ! | GAATCAAAACTGAAATTGTA+GGG | - | chr3_2:18897232-18897251 | None:intergenic | 25.0% |
| ! | GATTAGTGACAATTTATGTT+TGG | + | chr3_2:18897267-18897286 | Msa0398230:intron | 25.0% |
| ! | TTATGCTAATTTCGTCAATA+GGG | + | chr3_2:18897400-18897419 | Msa0398230:intron | 25.0% |
| ! | AAAATTCGATCATTTAAGCA+AGG | - | chr3_2:18897772-18897791 | None:intergenic | 25.0% |
| ! | ATATAACATAACGACAAACT+CGG | - | chr3_2:18897805-18897824 | None:intergenic | 25.0% |
| ! | TTAACACAAATCAGAATAGT+TGG | - | chr3_2:18897968-18897987 | None:intergenic | 25.0% |
| ! | TAGAGAGAAAAATTATAAGG+AGG | - | chr3_2:18898027-18898046 | None:intergenic | 25.0% |
| !!! | CTTCCTTTTCATTATTTTAG+TGG | + | chr3_2:18898161-18898180 | Msa0398230:intron | 25.0% |
| ! | AACCCACTAAAATAATGAAA+AGG | - | chr3_2:18898167-18898186 | None:intergenic | 25.0% |
| ! | TTATTGAAATGTGAATTGGA+TGG | + | chr3_2:18898316-18898335 | Msa0398230:intron | 25.0% |
| ! | TTTGGAGGTTAATTTCTATT+TGG | + | chr3_2:18898644-18898663 | Msa0398230:intron | 25.0% |
| ! | ATTGAATGCTCAAATGTATT+TGG | + | chr3_2:18898699-18898718 | Msa0398230:CDS | 25.0% |
| ! | TGTTTGTTTACCTGAAAAAT+TGG | - | chr3_2:18898766-18898785 | None:intergenic | 25.0% |
| !!! | TTTTTCAGGTAAACAAACAA+AGG | + | chr3_2:18898767-18898786 | Msa0398230:intron | 25.0% |
| ! | CATTTCATATATTACTGTTC+AGG | + | chr3_2:18899194-18899213 | Msa0398230:intron | 25.0% |
| AGTAAATGTATGGAGGATAT+GGG | + | chr3_2:18897072-18897091 | Msa0398230:intron | 30.0% | |
| ! | TTCAATTGTTTGGGGTTAAT+TGG | + | chr3_2:18897132-18897151 | Msa0398230:intron | 30.0% |
| ! | TCAATTGTTTGGGGTTAATT+GGG | + | chr3_2:18897133-18897152 | Msa0398230:intron | 30.0% |
| ACTTCCTGAGAGAAAAAAAA+AGG | + | chr3_2:18897159-18897178 | Msa0398230:intron | 30.0% | |
| CTTCCTGAGAGAAAAAAAAA+GGG | + | chr3_2:18897160-18897179 | Msa0398230:intron | 30.0% | |
| ATCAAAACTGAAATTGTAGG+GGG | - | chr3_2:18897230-18897249 | None:intergenic | 30.0% | |
| GGAATCAAAACTGAAATTGT+AGG | - | chr3_2:18897233-18897252 | None:intergenic | 30.0% | |
| CTTATGCTAATTTCGTCAAT+AGG | + | chr3_2:18897399-18897418 | Msa0398230:intron | 30.0% | |
| TATGCTAATTTCGTCAATAG+GGG | + | chr3_2:18897401-18897420 | Msa0398230:intron | 30.0% | |
| !!! | TTTTTTTATTGTTCGTGACC+AGG | + | chr3_2:18897441-18897460 | Msa0398230:intron | 30.0% |
| TACAATTCCAAAATCTTACC+TGG | - | chr3_2:18897462-18897481 | None:intergenic | 30.0% | |
| !!! | TGCGATTTTTTTTCGTTTGT+TGG | + | chr3_2:18897585-18897604 | Msa0398230:intron | 30.0% |
| !!! | GATTTTTTTTCGTTTGTTGG+AGG | + | chr3_2:18897588-18897607 | Msa0398230:intron | 30.0% |
| GAGTTTGTCGTTATGTTATA+TGG | + | chr3_2:18897804-18897823 | Msa0398230:intron | 30.0% | |
| ! | TCGTTATGTTATATGGCTTT+TGG | + | chr3_2:18897811-18897830 | Msa0398230:intron | 30.0% |
| ! | CGTTATGTTATATGGCTTTT+GGG | + | chr3_2:18897812-18897831 | Msa0398230:intron | 30.0% |
| ATATGCAAAGTAGAATGGAA+AGG | + | chr3_2:18897847-18897866 | Msa0398230:intron | 30.0% | |
| ! | GCATCACAAAAAAATGCTTT+TGG | + | chr3_2:18897926-18897945 | Msa0398230:intron | 30.0% |
| GAGGAGTGAAATAATGAATT+TGG | - | chr3_2:18898008-18898027 | None:intergenic | 30.0% | |
| AAGGAAAATAATATGCAGGT+TGG | - | chr3_2:18898113-18898132 | None:intergenic | 30.0% | |
| !!! | TTTAGTGGGTTGAATCATTT+TGG | + | chr3_2:18898176-18898195 | Msa0398230:intron | 30.0% |
| CCTTACATGAAAATCATTTG+AGG | - | chr3_2:18898407-18898426 | None:intergenic | 30.0% | |
| ! | CCTCAAATGATTTTCATGTA+AGG | + | chr3_2:18898404-18898423 | Msa0398230:intron | 30.0% |
| GTATTAGTCCATCTTATGTT+TGG | + | chr3_2:18898541-18898560 | Msa0398230:intron | 30.0% | |
| ATTCACTTCCAAACATAAGA+TGG | - | chr3_2:18898552-18898571 | None:intergenic | 30.0% | |
| TACATTTGAGCATTCAATAG+TGG | - | chr3_2:18898697-18898716 | None:intergenic | 30.0% | |
| TGCTCAAATGTATTTGGATA+TGG | + | chr3_2:18898705-18898724 | Msa0398230:CDS | 30.0% | |
| TCAAATGTATTTGGATATGG+AGG | + | chr3_2:18898708-18898727 | Msa0398230:CDS | 30.0% | |
| TTTACCTGAAAAATTGGAGA+AGG | - | chr3_2:18898760-18898779 | None:intergenic | 30.0% | |
| TTTGAATGTATTGCATGCAT+TGG | + | chr3_2:18898979-18898998 | Msa0398230:intron | 30.0% | |
| TTGAATGTATCCACGTAAAT+TGG | + | chr3_2:18899092-18899111 | Msa0398230:intron | 30.0% | |
| ATGTCTTCAATATCAAGTCT+CGG | + | chr3_2:18899147-18899166 | Msa0398230:intron | 30.0% | |
| AGTAAATGTATGGAGGATAT+GGG | + | chr3_2:18897072-18897091 | Msa0398230:intron | 30.0% | |
| ! | TTCAATTGTTTGGGGTTAAT+TGG | + | chr3_2:18897132-18897151 | Msa0398230:intron | 30.0% |
| ! | TCAATTGTTTGGGGTTAATT+GGG | + | chr3_2:18897133-18897152 | Msa0398230:intron | 30.0% |
| ACTTCCTGAGAGAAAAAAAA+AGG | + | chr3_2:18897159-18897178 | Msa0398230:intron | 30.0% | |
| CTTCCTGAGAGAAAAAAAAA+GGG | + | chr3_2:18897160-18897179 | Msa0398230:intron | 30.0% | |
| ATCAAAACTGAAATTGTAGG+GGG | - | chr3_2:18897230-18897249 | None:intergenic | 30.0% | |
| GGAATCAAAACTGAAATTGT+AGG | - | chr3_2:18897233-18897252 | None:intergenic | 30.0% | |
| CTTATGCTAATTTCGTCAAT+AGG | + | chr3_2:18897399-18897418 | Msa0398230:intron | 30.0% | |
| TATGCTAATTTCGTCAATAG+GGG | + | chr3_2:18897401-18897420 | Msa0398230:intron | 30.0% | |
| !!! | TTTTTTTATTGTTCGTGACC+AGG | + | chr3_2:18897441-18897460 | Msa0398230:intron | 30.0% |
| TACAATTCCAAAATCTTACC+TGG | - | chr3_2:18897462-18897481 | None:intergenic | 30.0% | |
| !!! | TGCGATTTTTTTTCGTTTGT+TGG | + | chr3_2:18897585-18897604 | Msa0398230:intron | 30.0% |
| !!! | GATTTTTTTTCGTTTGTTGG+AGG | + | chr3_2:18897588-18897607 | Msa0398230:intron | 30.0% |
| GAGTTTGTCGTTATGTTATA+TGG | + | chr3_2:18897804-18897823 | Msa0398230:intron | 30.0% | |
| ! | TCGTTATGTTATATGGCTTT+TGG | + | chr3_2:18897811-18897830 | Msa0398230:intron | 30.0% |
| ! | CGTTATGTTATATGGCTTTT+GGG | + | chr3_2:18897812-18897831 | Msa0398230:intron | 30.0% |
| ATATGCAAAGTAGAATGGAA+AGG | + | chr3_2:18897847-18897866 | Msa0398230:intron | 30.0% | |
| ! | GCATCACAAAAAAATGCTTT+TGG | + | chr3_2:18897926-18897945 | Msa0398230:intron | 30.0% |
| GAGGAGTGAAATAATGAATT+TGG | - | chr3_2:18898008-18898027 | None:intergenic | 30.0% | |
| AAGGAAAATAATATGCAGGT+TGG | - | chr3_2:18898113-18898132 | None:intergenic | 30.0% | |
| !!! | TTTAGTGGGTTGAATCATTT+TGG | + | chr3_2:18898176-18898195 | Msa0398230:intron | 30.0% |
| CCTTACATGAAAATCATTTG+AGG | - | chr3_2:18898407-18898426 | None:intergenic | 30.0% | |
| ! | CCTCAAATGATTTTCATGTA+AGG | + | chr3_2:18898404-18898423 | Msa0398230:intron | 30.0% |
| GTATTAGTCCATCTTATGTT+TGG | + | chr3_2:18898541-18898560 | Msa0398230:intron | 30.0% | |
| ATTCACTTCCAAACATAAGA+TGG | - | chr3_2:18898552-18898571 | None:intergenic | 30.0% | |
| TACATTTGAGCATTCAATAG+TGG | - | chr3_2:18898697-18898716 | None:intergenic | 30.0% | |
| TGCTCAAATGTATTTGGATA+TGG | + | chr3_2:18898705-18898724 | Msa0398230:CDS | 30.0% | |
| TCAAATGTATTTGGATATGG+AGG | + | chr3_2:18898708-18898727 | Msa0398230:CDS | 30.0% | |
| TTTACCTGAAAAATTGGAGA+AGG | - | chr3_2:18898760-18898779 | None:intergenic | 30.0% | |
| TTTGAATGTATTGCATGCAT+TGG | + | chr3_2:18898979-18898998 | Msa0398230:intron | 30.0% | |
| TTGAATGTATCCACGTAAAT+TGG | + | chr3_2:18899092-18899111 | Msa0398230:intron | 30.0% | |
| ATGTCTTCAATATCAAGTCT+CGG | + | chr3_2:18899147-18899166 | Msa0398230:intron | 30.0% | |
| GTGATCAGAGAGTAAATGTA+TGG | + | chr3_2:18897062-18897081 | Msa0398230:intron | 35.0% | |
| ATCAGAGAGTAAATGTATGG+AGG | + | chr3_2:18897065-18897084 | Msa0398230:intron | 35.0% | |
| GAGTAAATGTATGGAGGATA+TGG | + | chr3_2:18897071-18897090 | Msa0398230:intron | 35.0% | |
| GTAAATGTATGGAGGATATG+GGG | + | chr3_2:18897073-18897092 | Msa0398230:intron | 35.0% | |
| !!! | TCACCCTTTTTTTTTCTCTC+AGG | - | chr3_2:18897166-18897185 | None:intergenic | 35.0% |
| CAGAACAGAATTACAGAAGA+GGG | - | chr3_2:18897194-18897213 | None:intergenic | 35.0% | |
| ACAGAACAGAATTACAGAAG+AGG | - | chr3_2:18897195-18897214 | None:intergenic | 35.0% | |
| TCTTCTGTAATTCTGTTCTG+TGG | + | chr3_2:18897194-18897213 | Msa0398230:intron | 35.0% | |
| AAAACAGTGATGATAGTCAG+TGG | - | chr3_2:18897313-18897332 | None:intergenic | 35.0% | |
| !! | TTTTTCACTACAGGTTGAAG+AGG | + | chr3_2:18897336-18897355 | Msa0398230:intron | 35.0% |
| TGACGAAATTAGCATAAGAG+TGG | - | chr3_2:18897397-18897416 | None:intergenic | 35.0% | |
| ACATGTGCAATTGAGTTTCA+AGG | + | chr3_2:18897700-18897719 | Msa0398230:intron | 35.0% | |
| !! | GAGTTTCAAGGTTTTGTAGT+TGG | + | chr3_2:18897712-18897731 | Msa0398230:intron | 35.0% |
| ! | TATGTTATATGGCTTTTGGG+AGG | + | chr3_2:18897815-18897834 | Msa0398230:intron | 35.0% |
| !!! | GAATGGAAAGGTGTTTTGTT+TGG | + | chr3_2:18897859-18897878 | Msa0398230:intron | 35.0% |
| TCAAGTTTGCATAGCTTATG+CGG | + | chr3_2:18897904-18897923 | Msa0398230:intron | 35.0% | |
| GCAGAAGGAAAATAATATGC+AGG | - | chr3_2:18898117-18898136 | None:intergenic | 35.0% | |
| AATCAAATGACTGAAGCAGA+AGG | - | chr3_2:18898132-18898151 | None:intergenic | 35.0% | |
| ! | TATATCATGCTTGGTTCTCT+TGG | + | chr3_2:18898604-18898623 | Msa0398230:intron | 35.0% |
| !!! | GTAGTTTTGACGAACATGTT+TGG | + | chr3_2:18898626-18898645 | Msa0398230:intron | 35.0% |
| TTCTATTTGGCCATTGTTCT+TGG | + | chr3_2:18898657-18898676 | Msa0398230:intron | 35.0% | |
| TATTTGGATATGGAGGACAA+TGG | + | chr3_2:18898715-18898734 | Msa0398230:CDS | 35.0% | |
| ATTTGGATATGGAGGACAAT+GGG | + | chr3_2:18898716-18898735 | Msa0398230:CDS | 35.0% | |
| ! | GTTTCCTTCTCCAATTTTTC+AGG | + | chr3_2:18898753-18898772 | Msa0398230:CDS | 35.0% |
| AAGTGTAGAGCTATAACCAA+TGG | - | chr3_2:18898806-18898825 | None:intergenic | 35.0% | |
| TTAAAGCTTACCAGAATTGC+AGG | + | chr3_2:18899225-18899244 | Msa0398230:CDS | 35.0% | |
| ATCTGATGCATTTGTGTGAA+GGG | + | chr3_2:18899254-18899273 | Msa0398230:exon | 35.0% | |
| GTGATCAGAGAGTAAATGTA+TGG | + | chr3_2:18897062-18897081 | Msa0398230:intron | 35.0% | |
| ATCAGAGAGTAAATGTATGG+AGG | + | chr3_2:18897065-18897084 | Msa0398230:intron | 35.0% | |
| GAGTAAATGTATGGAGGATA+TGG | + | chr3_2:18897071-18897090 | Msa0398230:intron | 35.0% | |
| GTAAATGTATGGAGGATATG+GGG | + | chr3_2:18897073-18897092 | Msa0398230:intron | 35.0% | |
| !!! | TCACCCTTTTTTTTTCTCTC+AGG | - | chr3_2:18897166-18897185 | None:intergenic | 35.0% |
| CAGAACAGAATTACAGAAGA+GGG | - | chr3_2:18897194-18897213 | None:intergenic | 35.0% | |
| ACAGAACAGAATTACAGAAG+AGG | - | chr3_2:18897195-18897214 | None:intergenic | 35.0% | |
| TCTTCTGTAATTCTGTTCTG+TGG | + | chr3_2:18897194-18897213 | Msa0398230:intron | 35.0% | |
| AAAACAGTGATGATAGTCAG+TGG | - | chr3_2:18897313-18897332 | None:intergenic | 35.0% | |
| !! | TTTTTCACTACAGGTTGAAG+AGG | + | chr3_2:18897336-18897355 | Msa0398230:intron | 35.0% |
| TGACGAAATTAGCATAAGAG+TGG | - | chr3_2:18897397-18897416 | None:intergenic | 35.0% | |
| ACATGTGCAATTGAGTTTCA+AGG | + | chr3_2:18897700-18897719 | Msa0398230:intron | 35.0% | |
| !! | GAGTTTCAAGGTTTTGTAGT+TGG | + | chr3_2:18897712-18897731 | Msa0398230:intron | 35.0% |
| ! | TATGTTATATGGCTTTTGGG+AGG | + | chr3_2:18897815-18897834 | Msa0398230:intron | 35.0% |
| !!! | GAATGGAAAGGTGTTTTGTT+TGG | + | chr3_2:18897859-18897878 | Msa0398230:intron | 35.0% |
| TCAAGTTTGCATAGCTTATG+CGG | + | chr3_2:18897904-18897923 | Msa0398230:intron | 35.0% | |
| GCAGAAGGAAAATAATATGC+AGG | - | chr3_2:18898117-18898136 | None:intergenic | 35.0% | |
| AATCAAATGACTGAAGCAGA+AGG | - | chr3_2:18898132-18898151 | None:intergenic | 35.0% | |
| ! | TATATCATGCTTGGTTCTCT+TGG | + | chr3_2:18898604-18898623 | Msa0398230:intron | 35.0% |
| !!! | GTAGTTTTGACGAACATGTT+TGG | + | chr3_2:18898626-18898645 | Msa0398230:intron | 35.0% |
| TTCTATTTGGCCATTGTTCT+TGG | + | chr3_2:18898657-18898676 | Msa0398230:intron | 35.0% | |
| TATTTGGATATGGAGGACAA+TGG | + | chr3_2:18898715-18898734 | Msa0398230:CDS | 35.0% | |
| ATTTGGATATGGAGGACAAT+GGG | + | chr3_2:18898716-18898735 | Msa0398230:CDS | 35.0% | |
| ! | GTTTCCTTCTCCAATTTTTC+AGG | + | chr3_2:18898753-18898772 | Msa0398230:CDS | 35.0% |
| AAGTGTAGAGCTATAACCAA+TGG | - | chr3_2:18898806-18898825 | None:intergenic | 35.0% | |
| TTAAAGCTTACCAGAATTGC+AGG | + | chr3_2:18899225-18899244 | Msa0398230:CDS | 35.0% | |
| ATCTGATGCATTTGTGTGAA+GGG | + | chr3_2:18899254-18899273 | Msa0398230:exon | 35.0% | |
| TCACTAATCCTACACCAATG+GGG | - | chr3_2:18897256-18897275 | None:intergenic | 40.0% | |
| GTCACTAATCCTACACCAAT+GGG | - | chr3_2:18897257-18897276 | None:intergenic | 40.0% | |
| TGTCACTAATCCTACACCAA+TGG | - | chr3_2:18897258-18897277 | None:intergenic | 40.0% | |
| !! | CTACAGGTTGAAGAGGATTT+TGG | + | chr3_2:18897343-18897362 | Msa0398230:intron | 40.0% |
| !! | GTTGAAGAGGATTTTGGTCA+TGG | + | chr3_2:18897349-18897368 | Msa0398230:CDS | 40.0% |
| ! | TTCGTGACCAGGTAAGATTT+TGG | + | chr3_2:18897452-18897471 | Msa0398230:intron | 40.0% |
| AGCGACTATGAAAGTGAAGT+AGG | + | chr3_2:18898272-18898291 | Msa0398230:intron | 40.0% | |
| !! | GTTTTGACGAACATGTTTGG+AGG | + | chr3_2:18898629-18898648 | Msa0398230:intron | 40.0% |
| TTTGGATATGGAGGACAATG+GGG | + | chr3_2:18898717-18898736 | Msa0398230:CDS | 40.0% | |
| ATTGGAGAAGGAAACCATTC+AGG | - | chr3_2:18898748-18898767 | None:intergenic | 40.0% | |
| AGGATACTTCATGCTTCCAT+TGG | + | chr3_2:18898787-18898806 | Msa0398230:intron | 40.0% | |
| ! | TGTATTGCATGCATTGGTGT+CGG | + | chr3_2:18898985-18899004 | Msa0398230:intron | 40.0% |
| TGAACACAACAATGCACAGA+CGG | + | chr3_2:18899029-18899048 | Msa0398230:intron | 40.0% | |
| GTATCCACGTAAATTGGTGT+CGG | + | chr3_2:18899098-18899117 | Msa0398230:intron | 40.0% | |
| ! | TATCCACGTAAATTGGTGTC+GGG | + | chr3_2:18899099-18899118 | Msa0398230:intron | 40.0% |
| !! | TCGGTGCTAGATAGAGTATA+AGG | + | chr3_2:18899166-18899185 | Msa0398230:intron | 40.0% |
| CATCTGATGCATTTGTGTGA+AGG | + | chr3_2:18899253-18899272 | Msa0398230:CDS | 40.0% | |
| TCACTAATCCTACACCAATG+GGG | - | chr3_2:18897256-18897275 | None:intergenic | 40.0% | |
| GTCACTAATCCTACACCAAT+GGG | - | chr3_2:18897257-18897276 | None:intergenic | 40.0% | |
| TGTCACTAATCCTACACCAA+TGG | - | chr3_2:18897258-18897277 | None:intergenic | 40.0% | |
| !! | CTACAGGTTGAAGAGGATTT+TGG | + | chr3_2:18897343-18897362 | Msa0398230:intron | 40.0% |
| !! | GTTGAAGAGGATTTTGGTCA+TGG | + | chr3_2:18897349-18897368 | Msa0398230:CDS | 40.0% |
| ! | TTCGTGACCAGGTAAGATTT+TGG | + | chr3_2:18897452-18897471 | Msa0398230:intron | 40.0% |
| AGCGACTATGAAAGTGAAGT+AGG | + | chr3_2:18898272-18898291 | Msa0398230:intron | 40.0% | |
| !! | GTTTTGACGAACATGTTTGG+AGG | + | chr3_2:18898629-18898648 | Msa0398230:intron | 40.0% |
| TTTGGATATGGAGGACAATG+GGG | + | chr3_2:18898717-18898736 | Msa0398230:CDS | 40.0% | |
| ATTGGAGAAGGAAACCATTC+AGG | - | chr3_2:18898748-18898767 | None:intergenic | 40.0% | |
| AGGATACTTCATGCTTCCAT+TGG | + | chr3_2:18898787-18898806 | Msa0398230:intron | 40.0% | |
| ! | TGTATTGCATGCATTGGTGT+CGG | + | chr3_2:18898985-18899004 | Msa0398230:intron | 40.0% |
| TGAACACAACAATGCACAGA+CGG | + | chr3_2:18899029-18899048 | Msa0398230:intron | 40.0% | |
| GTATCCACGTAAATTGGTGT+CGG | + | chr3_2:18899098-18899117 | Msa0398230:intron | 40.0% | |
| ! | TATCCACGTAAATTGGTGTC+GGG | + | chr3_2:18899099-18899118 | Msa0398230:intron | 40.0% |
| !! | TCGGTGCTAGATAGAGTATA+AGG | + | chr3_2:18899166-18899185 | Msa0398230:intron | 40.0% |
| CATCTGATGCATTTGTGTGA+AGG | + | chr3_2:18899253-18899272 | Msa0398230:CDS | 40.0% | |
| !!! | TCAGTTTTGATTCCCCCCAT+TGG | + | chr3_2:18897239-18897258 | Msa0398230:intron | 45.0% |
| ACTAATCCTACACCAATGGG+GGG | - | chr3_2:18897254-18897273 | None:intergenic | 45.0% | |
| CACTAATCCTACACCAATGG+GGG | - | chr3_2:18897255-18897274 | None:intergenic | 45.0% | |
| CCATCTTCTGCCAAGAACAA+TGG | - | chr3_2:18898670-18898689 | None:intergenic | 45.0% | |
| CCATTGTTCTTGGCAGAAGA+TGG | + | chr3_2:18898667-18898686 | Msa0398230:intron | 45.0% | |
| ACAATGGGGAGATACCTGAA+TGG | + | chr3_2:18898731-18898750 | Msa0398230:CDS | 45.0% | |
| AGATGCAATGCCTGCAATTC+TGG | - | chr3_2:18899238-18899257 | None:intergenic | 45.0% | |
| !!! | TCAGTTTTGATTCCCCCCAT+TGG | + | chr3_2:18897239-18897258 | Msa0398230:intron | 45.0% |
| ACTAATCCTACACCAATGGG+GGG | - | chr3_2:18897254-18897273 | None:intergenic | 45.0% | |
| CACTAATCCTACACCAATGG+GGG | - | chr3_2:18897255-18897274 | None:intergenic | 45.0% | |
| CCATCTTCTGCCAAGAACAA+TGG | - | chr3_2:18898670-18898689 | None:intergenic | 45.0% | |
| CCATTGTTCTTGGCAGAAGA+TGG | + | chr3_2:18898667-18898686 | Msa0398230:intron | 45.0% | |
| ACAATGGGGAGATACCTGAA+TGG | + | chr3_2:18898731-18898750 | Msa0398230:CDS | 45.0% | |
| AGATGCAATGCCTGCAATTC+TGG | - | chr3_2:18899238-18899257 | None:intergenic | 45.0% | |
| ATGTTTGTGGTAGCCAGAGC+AGG | + | chr3_2:18897020-18897039 | Msa0398230:CDS | 50.0% | |
| TGTTTGTGGTAGCCAGAGCA+GGG | + | chr3_2:18897021-18897040 | Msa0398230:CDS | 50.0% | |
| TTGATTCCCCCCATTGGTGT+AGG | + | chr3_2:18897245-18897264 | Msa0398230:intron | 50.0% | |
| ATGTTTGTGGTAGCCAGAGC+AGG | + | chr3_2:18897020-18897039 | Msa0398230:CDS | 50.0% | |
| TGTTTGTGGTAGCCAGAGCA+GGG | + | chr3_2:18897021-18897040 | Msa0398230:CDS | 50.0% | |
| TTGATTCCCCCCATTGGTGT+AGG | + | chr3_2:18897245-18897264 | Msa0398230:intron | 50.0% | |
| CCAGAGCAGGGAAGATGAGA+GGG | + | chr3_2:18897033-18897052 | Msa0398230:CDS | 55.0% | |
| GTGCCCGACACCAATTTACG+TGG | - | chr3_2:18899105-18899124 | None:intergenic | 55.0% | |
| CCAGAGCAGGGAAGATGAGA+GGG | + | chr3_2:18897033-18897052 | Msa0398230:CDS | 55.0% | |
| GTGCCCGACACCAATTTACG+TGG | - | chr3_2:18899105-18899124 | None:intergenic | 55.0% | |
| GCCAGAGCAGGGAAGATGAG+AGG | + | chr3_2:18897032-18897051 | Msa0398230:CDS | 60.0% | |
| CCCTCTCATCTTCCCTGCTC+TGG | - | chr3_2:18897036-18897055 | None:intergenic | 60.0% | |
| GAGCAGGGAAGATGAGAGGG+AGG | + | chr3_2:18897036-18897055 | Msa0398230:CDS | 60.0% | |
| GCCAGAGCAGGGAAGATGAG+AGG | + | chr3_2:18897032-18897051 | Msa0398230:CDS | 60.0% | |
| CCCTCTCATCTTCCCTGCTC+TGG | - | chr3_2:18897036-18897055 | None:intergenic | 60.0% | |
| GAGCAGGGAAGATGAGAGGG+AGG | + | chr3_2:18897036-18897055 | Msa0398230:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 18897010 | 18899322 | 18897010 | ID=Msa0398230;Name=Msa0398230 |
| chr3_2 | mRNA | 18897010 | 18899322 | 18897010 | ID=Msa0398230-mRNA-1;Parent=Msa0398230;Name=Msa0398230-mRNA-1;_AED=0.45;_eAED=0.55;_QI=0|0.33|0.5|1|1|1|4|50|72 |
| chr3_2 | exon | 18897010 | 18897057 | 18897010 | ID=Msa0398230-mRNA-1:exon:4200;Parent=Msa0398230-mRNA-1 |
| chr3_2 | exon | 18897349 | 18897370 | 18897349 | ID=Msa0398230-mRNA-1:exon:4201;Parent=Msa0398230-mRNA-1 |
| chr3_2 | exon | 18898683 | 18898774 | 18898683 | ID=Msa0398230-mRNA-1:exon:4202;Parent=Msa0398230-mRNA-1 |
| chr3_2 | exon | 18899216 | 18899322 | 18899216 | ID=Msa0398230-mRNA-1:exon:4203;Parent=Msa0398230-mRNA-1 |
| chr3_2 | CDS | 18897010 | 18897057 | 18897010 | ID=Msa0398230-mRNA-1:cds;Parent=Msa0398230-mRNA-1 |
| chr3_2 | CDS | 18897349 | 18897370 | 18897349 | ID=Msa0398230-mRNA-1:cds;Parent=Msa0398230-mRNA-1 |
| chr3_2 | CDS | 18898683 | 18898774 | 18898683 | ID=Msa0398230-mRNA-1:cds;Parent=Msa0398230-mRNA-1 |
| chr3_2 | CDS | 18899216 | 18899272 | 18899216 | ID=Msa0398230-mRNA-1:cds;Parent=Msa0398230-mRNA-1 |
| chr3_2 | three_prime_UTR | 18899273 | 18899322 | 18899273 | ID=Msa0398230-mRNA-1:three_prime_utr;Parent=Msa0398230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
