AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0895310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0895310 MtrunA17_Chr6g0479111 97.826 230 3 2 1 228 1 230 1.19e-168 463
Msa0895310 MtrunA17_Chr3g0110281 62.500 160 55 3 68 223 30 188 1.39e-67 207
Msa0895310 MtrunA17_Chr1g0161131 59.748 159 60 3 70 225 1 158 1.38e-63 195
Msa0895310 MtrunA17_Chr8g0391621 59.006 161 62 3 70 227 1 160 3.92e-63 194
Msa0895310 MtrunA17_Chr5g0434521 56.250 160 63 3 68 223 8 164 2.41e-56 177
Msa0895310 MtrunA17_Chr8g0353331 47.771 157 73 2 71 218 1 157 5.21e-44 145
Msa0895310 MtrunA17_Chr7g0252391 47.239 163 74 3 71 221 1 163 2.72e-42 142
Msa0895310 MtrunA17_Chr1g0189471 50.000 60 27 1 77 133 7 66 3.93e-16 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0895310 AT1G18300.1 53.927 191 83 3 36 222 6 195 4.81e-70 213
Msa0895310 AT1G73540.1 60.736 163 59 4 64 224 35 194 5.15e-64 197
Msa0895310 AT1G14860.1 60.256 156 59 2 70 223 1 155 1.26e-62 193
Msa0895310 AT2G01670.1 55.488 164 70 2 67 228 3 165 6.78e-61 189
Msa0895310 AT1G12880.1 46.988 166 73 3 71 221 1 166 3.30e-42 142
Msa0895310 AT3G26690.1 44.910 167 76 3 71 221 1 167 5.19e-39 134
Msa0895310 AT3G26690.2 44.910 167 76 3 71 221 1 167 5.19e-39 134
Msa0895310 AT3G12600.1 49.375 160 70 3 71 219 1 160 1.00e-36 127
Msa0895310 AT3G12600.2 49.324 148 64 3 83 219 4 151 1.18e-32 117

Find 53 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCTTATGTTCATTTC+TGG 0.092026 6_1:+82942153 None:intergenic
TGCAGAGTAATTTGGGTAAA+TGG 0.215433 6_1:-82942257 Msa0895310:intron
TAGGCATTCTCCCTTGCTTT+TGG 0.224935 6_1:-82941671 Msa0895310:three_prime_UTR
TGAACATAAGAAGAAGAAAA+TGG 0.253808 6_1:-82942146 Msa0895310:CDS
ATAGAAGAAGCTGGAGTTAT+TGG 0.256499 6_1:-82942392 Msa0895310:CDS
GTAATCAAAAGTCAAGAATT+TGG 0.261842 6_1:-82941594 Msa0895310:three_prime_UTR
AATAACTCCAGCTTCTTCTA+TGG 0.282235 6_1:+82942394 None:intergenic
TTAGCAAGGAGTTGGATAAT+TGG 0.322855 6_1:-82942176 Msa0895310:CDS
AGAAGCACTCAAAAGATATT+AGG 0.325489 6_1:-82941628 Msa0895310:three_prime_UTR
TTGCTATTCTCTCACTTTGA+TGG 0.335413 6_1:-82941319 Msa0895310:three_prime_UTR
GAAGGAAGCTTTAGATGAAT+TGG 0.336584 6_1:-82941740 Msa0895310:CDS
ACCTAAAACTTAGATTGAAT+TGG 0.341917 6_1:+82941705 None:intergenic
TGCAAATGTCTACCAGTTCT+AGG 0.360990 6_1:+82943066 None:intergenic
TCTACGGTGGATCACTTCTA+AGG 0.373192 6_1:+82941464 None:intergenic
GCTTCCTTCATCCAAGCATA+TGG 0.390570 6_1:+82941754 None:intergenic
TGCTATTCTCTCACTTTGAT+GGG 0.392243 6_1:-82941318 Msa0895310:three_prime_UTR
AACCAACAAAAGAATTGTAA+TGG 0.417912 6_1:-82943205 Msa0895310:CDS
AAGAAATATGCCCATATGCT+TGG 0.435806 6_1:-82941765 Msa0895310:CDS
TGTTTGGTTTCTCCTAGAAC+TGG 0.445974 6_1:-82943078 Msa0895310:CDS
GCAGTTTCCAAAAGGAGGTT+GGG 0.447924 6_1:-82942456 Msa0895310:CDS
ATTGGAGAATATGATGTGTT+TGG 0.449206 6_1:-82943094 Msa0895310:CDS
ACCAACAAAAGAATTGTAAT+GGG 0.449371 6_1:-82943204 Msa0895310:CDS
GAACATAAGAAGAAGAAAAT+GGG 0.454169 6_1:-82942145 Msa0895310:intron
GTTCCCTTTGCTTGTTAGCA+AGG 0.472162 6_1:-82942190 Msa0895310:CDS
TTTGCTTGTTAGCAAGGAGT+TGG 0.481309 6_1:-82942184 Msa0895310:CDS
TGCAGTTTCCAAAAGGAGGT+TGG 0.488124 6_1:-82942457 Msa0895310:CDS
AAAGAATGGAACTCAAGAAA+AGG 0.494824 6_1:-82942522 Msa0895310:CDS
TCTCAAAGCAGCTTGTTCCA+TGG 0.496073 6_1:+82942421 None:intergenic
GAATTGACTTTGTACATCTA+CGG 0.497466 6_1:+82941448 None:intergenic
ATCATATTCTCCAATTGTTG+AGG 0.499473 6_1:+82943102 None:intergenic
AGAGAAACCATAGAAGAAGC+TGG 0.505150 6_1:-82942401 Msa0895310:CDS
TCATATTCTCCAATTGTTGA+GGG 0.508447 6_1:+82943103 None:intergenic
AACTCAAGAAAAGGAAATAG+AGG 0.509278 6_1:-82942513 Msa0895310:CDS
AACTCCTTGCTAACAAGCAA+AGG 0.516565 6_1:+82942186 None:intergenic
CTTCCTTCATCCAAGCATAT+GGG 0.522789 6_1:+82941755 None:intergenic
ATAAGTGCTCAAAAGGGTAG+TGG 0.532381 6_1:-82942482 Msa0895310:CDS
ACAAGGATGTCGTCAAGTTG+TGG 0.541451 6_1:-82943034 Msa0895310:CDS
CATGTATCCTTCATGCATAG+TGG 0.542137 6_1:+82942212 None:intergenic
CAAGGATGTCGTCAAGTTGT+GGG 0.550727 6_1:-82943033 Msa0895310:CDS
ACTCCTTGCTAACAAGCAAA+GGG 0.551729 6_1:+82942187 None:intergenic
ATGCCCATATGCTTGGATGA+AGG 0.557447 6_1:-82941758 Msa0895310:CDS
CTTTGTAGATTCCAAAAGCA+AGG 0.558395 6_1:+82941660 None:intergenic
AGTGGAATGCAGTTTCCAAA+AGG 0.559974 6_1:-82942464 Msa0895310:CDS
ATCCTTCATGCATAGTGGGT+TGG 0.562217 6_1:+82942217 None:intergenic
GAATTCTTAGAGTGTAGTTG+AGG 0.568797 6_1:-82941492 Msa0895310:three_prime_UTR
ATGTATCCTTCATGCATAGT+GGG 0.569535 6_1:+82942213 None:intergenic
CATTTGCAACGTTATGAACA+AGG 0.571762 6_1:-82943051 Msa0895310:CDS
CGCCAACCCACTATGCATGA+AGG 0.576057 6_1:-82942219 Msa0895310:CDS
TTTGTAGATTCCAAAAGCAA+GGG 0.611060 6_1:+82941661 None:intergenic
GGAATGCAGTTTCCAAAAGG+AGG 0.613503 6_1:-82942461 Msa0895310:CDS
TTGACTTTGTACATCTACGG+TGG 0.634012 6_1:+82941451 None:intergenic
AAGGATGTCGTCAAGTTGTG+GGG 0.655005 6_1:-82943032 Msa0895310:intron
TGTAATCATGCAGTTGACTG+TGG 0.660929 6_1:-82941797 Msa0895310:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTTGATAATTAATATAA+TGG - chr6_1:82941670-82941689 Msa0895310:three_prime_UTR 10.0%
!!! TTTTAAAGTTTTGATTTTTA+AGG - chr6_1:82941816-82941835 Msa0895310:intron 10.0%
!!! ATTTTTCATGAAATAATATT+TGG - chr6_1:82942300-82942319 Msa0895310:intron 10.0%
!! ATATTATAAAAGTTGAATAT+AGG + chr6_1:82942514-82942533 None:intergenic 10.0%
!!! ATGTTTGATAATTAATATAA+TGG - chr6_1:82941670-82941689 Msa0895310:three_prime_UTR 10.0%
!!! TTTTAAAGTTTTGATTTTTA+AGG - chr6_1:82941816-82941835 Msa0895310:intron 10.0%
!!! ATTTTTCATGAAATAATATT+TGG - chr6_1:82942300-82942319 Msa0895310:intron 10.0%
!! ATATTATAAAAGTTGAATAT+AGG + chr6_1:82942514-82942533 None:intergenic 10.0%
!!! GACAATTTATGAAATTTTTA+AGG - chr6_1:82941692-82941711 Msa0895310:three_prime_UTR 15.0%
!!! ATTTTTAAGGTTTTATCAAT+TGG - chr6_1:82941705-82941724 Msa0895310:exon 15.0%
!!! TTTTTAAGGTTTTATCAATT+GGG - chr6_1:82941706-82941725 Msa0895310:exon 15.0%
!!! GGAATTTTTTGAAATTTTTA+AGG - chr6_1:82941774-82941793 Msa0895310:CDS 15.0%
!!! TTAAGGTTTTTTTTTTCAAT+TGG - chr6_1:82941791-82941810 Msa0895310:intron 15.0%
!!! TAAGGTTTTTTTTTTCAATT+GGG - chr6_1:82941792-82941811 Msa0895310:intron 15.0%
!!! AACAATTTTTGAAATTTTGA+AGG - chr6_1:82941858-82941877 Msa0895310:intron 15.0%
!!! TGTAATAACTTTTTTAGATT+TGG - chr6_1:82942271-82942290 Msa0895310:intron 15.0%
!! TTACAAATGAAAGAAATATT+AGG + chr6_1:82942806-82942825 None:intergenic 15.0%
!!! GACAATTTATGAAATTTTTA+AGG - chr6_1:82941692-82941711 Msa0895310:three_prime_UTR 15.0%
!!! ATTTTTAAGGTTTTATCAAT+TGG - chr6_1:82941705-82941724 Msa0895310:exon 15.0%
!!! TTTTTAAGGTTTTATCAATT+GGG - chr6_1:82941706-82941725 Msa0895310:exon 15.0%
!!! GGAATTTTTTGAAATTTTTA+AGG - chr6_1:82941774-82941793 Msa0895310:CDS 15.0%
!!! TTAAGGTTTTTTTTTTCAAT+TGG - chr6_1:82941791-82941810 Msa0895310:intron 15.0%
!!! TAAGGTTTTTTTTTTCAATT+GGG - chr6_1:82941792-82941811 Msa0895310:intron 15.0%
!!! AACAATTTTTGAAATTTTGA+AGG - chr6_1:82941858-82941877 Msa0895310:intron 15.0%
!!! TGTAATAACTTTTTTAGATT+TGG - chr6_1:82942271-82942290 Msa0895310:intron 15.0%
!! TTACAAATGAAAGAAATATT+AGG + chr6_1:82942806-82942825 None:intergenic 15.0%
!!! TTTTAAGGTTTTATCAATTG+GGG - chr6_1:82941707-82941726 Msa0895310:exon 20.0%
!!! AAGGTTTTTTTTTTCAATTG+GGG - chr6_1:82941793-82941812 Msa0895310:intron 20.0%
!!! AAGTTTTGATTTTTAAGGTT+TGG - chr6_1:82941821-82941840 Msa0895310:intron 20.0%
!!! TTTTGAAGGTTTTTCTTAAT+TGG - chr6_1:82941872-82941891 Msa0895310:intron 20.0%
!!! TTTGAAGGTTTTTCTTAATT+GGG - chr6_1:82941873-82941892 Msa0895310:intron 20.0%
!! TGATTCAACAATGAATAAAA+GGG + chr6_1:82941926-82941945 None:intergenic 20.0%
!! ATGATTCAACAATGAATAAA+AGG + chr6_1:82941927-82941946 None:intergenic 20.0%
!! TTTATTCATTGTTGAATCAT+TGG - chr6_1:82941927-82941946 Msa0895310:intron 20.0%
!!! ACTTTGTTTTATGTTGTTTT+TGG - chr6_1:82942042-82942061 Msa0895310:intron 20.0%
!! TTTATAAATGACACTTGATT+AGG + chr6_1:82942687-82942706 None:intergenic 20.0%
!! TCTTAATTAAGTAGCATTAT+TGG - chr6_1:82942753-82942772 Msa0895310:intron 20.0%
!!! TCTTTTATTCAATCATTCTT+TGG - chr6_1:82943195-82943214 Msa0895310:CDS 20.0%
!!! TTTTAAGGTTTTATCAATTG+GGG - chr6_1:82941707-82941726 Msa0895310:exon 20.0%
!!! AAGGTTTTTTTTTTCAATTG+GGG - chr6_1:82941793-82941812 Msa0895310:intron 20.0%
!!! AAGTTTTGATTTTTAAGGTT+TGG - chr6_1:82941821-82941840 Msa0895310:intron 20.0%
!!! TTTTGAAGGTTTTTCTTAAT+TGG - chr6_1:82941872-82941891 Msa0895310:intron 20.0%
!!! TTTGAAGGTTTTTCTTAATT+GGG - chr6_1:82941873-82941892 Msa0895310:intron 20.0%
!! TGATTCAACAATGAATAAAA+GGG + chr6_1:82941926-82941945 None:intergenic 20.0%
!! ATGATTCAACAATGAATAAA+AGG + chr6_1:82941927-82941946 None:intergenic 20.0%
!! TTTATTCATTGTTGAATCAT+TGG - chr6_1:82941927-82941946 Msa0895310:intron 20.0%
!!! ACTTTGTTTTATGTTGTTTT+TGG - chr6_1:82942042-82942061 Msa0895310:intron 20.0%
!! TTTATAAATGACACTTGATT+AGG + chr6_1:82942687-82942706 None:intergenic 20.0%
!! TCTTAATTAAGTAGCATTAT+TGG - chr6_1:82942753-82942772 Msa0895310:intron 20.0%
!!! TCTTTTATTCAATCATTCTT+TGG - chr6_1:82943195-82943214 Msa0895310:CDS 20.0%
! AACCAACAAAAGAATTGTAA+TGG - chr6_1:82941413-82941432 Msa0895310:three_prime_UTR 25.0%
! ACCAACAAAAGAATTGTAAT+GGG - chr6_1:82941414-82941433 Msa0895310:three_prime_UTR 25.0%
!! TCTTTTACTTTCAAAGTCTT+TGG - chr6_1:82941437-82941456 Msa0895310:three_prime_UTR 25.0%
! CTTTCTTAGAAAAAAGCAAA+GGG + chr6_1:82941479-82941498 None:intergenic 25.0%
! ACTTTCTTAGAAAAAAGCAA+AGG + chr6_1:82941480-82941499 None:intergenic 25.0%
!! TGATCTTGTGATTTTTCTTT+TGG - chr6_1:82941624-82941643 Msa0895310:three_prime_UTR 25.0%
!! GATCTTGTGATTTTTCTTTT+GGG - chr6_1:82941625-82941644 Msa0895310:three_prime_UTR 25.0%
!!! CTTTTGGGTTTCTTAAAAAT+TGG - chr6_1:82941640-82941659 Msa0895310:three_prime_UTR 25.0%
! AATTGGGGTTTCTTAAAATT+TGG - chr6_1:82941722-82941741 Msa0895310:CDS 25.0%
! ATTGGGGTTTCTTAAAATTT+GGG - chr6_1:82941723-82941742 Msa0895310:CDS 25.0%
!!! AAATTTGGGTTTTTAGTGTT+TGG - chr6_1:82941737-82941756 Msa0895310:CDS 25.0%
!! TGTTTGGAATTGAATATGAT+GGG - chr6_1:82941753-82941772 Msa0895310:CDS 25.0%
!! CCATTCTTTTTGTATCTATA+AGG + chr6_1:82942085-82942104 None:intergenic 25.0%
! CCTTATAGATACAAAAAGAA+TGG - chr6_1:82942082-82942101 Msa0895310:intron 25.0%
! TGAACATAAGAAGAAGAAAA+TGG - chr6_1:82942472-82942491 Msa0895310:CDS 25.0%
! GAACATAAGAAGAAGAAAAT+GGG - chr6_1:82942473-82942492 Msa0895310:CDS 25.0%
!!! AAAAAAGTATTATGTCTGAG+CGG + chr6_1:82942615-82942634 None:intergenic 25.0%
! AGATGAATTGACATTTGAAT+AGG + chr6_1:82942719-82942738 None:intergenic 25.0%
!! ACCAATTCAATCTAAGTTTT+AGG - chr6_1:82942912-82942931 Msa0895310:intron 25.0%
! ACCTAAAACTTAGATTGAAT+TGG + chr6_1:82942916-82942935 None:intergenic 25.0%
!!! TTTTAGGTTGTGTAAATTGT+AGG - chr6_1:82942928-82942947 Msa0895310:intron 25.0%
! GTAATCAAAAGTCAAGAATT+TGG - chr6_1:82943024-82943043 Msa0895310:intron 25.0%
!! TTTTCAATTTTGCTTGAGTT+AGG - chr6_1:82943087-82943106 Msa0895310:CDS 25.0%
!!! ATGGGCACATTTTTTTTTAA+GGG - chr6_1:82943318-82943337 Msa0895310:five_prime_UTR 25.0%
! AACCAACAAAAGAATTGTAA+TGG - chr6_1:82941413-82941432 Msa0895310:three_prime_UTR 25.0%
! ACCAACAAAAGAATTGTAAT+GGG - chr6_1:82941414-82941433 Msa0895310:three_prime_UTR 25.0%
!! TCTTTTACTTTCAAAGTCTT+TGG - chr6_1:82941437-82941456 Msa0895310:three_prime_UTR 25.0%
! CTTTCTTAGAAAAAAGCAAA+GGG + chr6_1:82941479-82941498 None:intergenic 25.0%
! ACTTTCTTAGAAAAAAGCAA+AGG + chr6_1:82941480-82941499 None:intergenic 25.0%
!! TGATCTTGTGATTTTTCTTT+TGG - chr6_1:82941624-82941643 Msa0895310:three_prime_UTR 25.0%
!! GATCTTGTGATTTTTCTTTT+GGG - chr6_1:82941625-82941644 Msa0895310:three_prime_UTR 25.0%
!!! CTTTTGGGTTTCTTAAAAAT+TGG - chr6_1:82941640-82941659 Msa0895310:three_prime_UTR 25.0%
! AATTGGGGTTTCTTAAAATT+TGG - chr6_1:82941722-82941741 Msa0895310:CDS 25.0%
! ATTGGGGTTTCTTAAAATTT+GGG - chr6_1:82941723-82941742 Msa0895310:CDS 25.0%
!!! AAATTTGGGTTTTTAGTGTT+TGG - chr6_1:82941737-82941756 Msa0895310:CDS 25.0%
!! TGTTTGGAATTGAATATGAT+GGG - chr6_1:82941753-82941772 Msa0895310:CDS 25.0%
!! CCATTCTTTTTGTATCTATA+AGG + chr6_1:82942085-82942104 None:intergenic 25.0%
! CCTTATAGATACAAAAAGAA+TGG - chr6_1:82942082-82942101 Msa0895310:intron 25.0%
! TGAACATAAGAAGAAGAAAA+TGG - chr6_1:82942472-82942491 Msa0895310:CDS 25.0%
! GAACATAAGAAGAAGAAAAT+GGG - chr6_1:82942473-82942492 Msa0895310:CDS 25.0%
!!! AAAAAAGTATTATGTCTGAG+CGG + chr6_1:82942615-82942634 None:intergenic 25.0%
! AGATGAATTGACATTTGAAT+AGG + chr6_1:82942719-82942738 None:intergenic 25.0%
!! ACCAATTCAATCTAAGTTTT+AGG - chr6_1:82942912-82942931 Msa0895310:intron 25.0%
! ACCTAAAACTTAGATTGAAT+TGG + chr6_1:82942916-82942935 None:intergenic 25.0%
!!! TTTTAGGTTGTGTAAATTGT+AGG - chr6_1:82942928-82942947 Msa0895310:intron 25.0%
! GTAATCAAAAGTCAAGAATT+TGG - chr6_1:82943024-82943043 Msa0895310:intron 25.0%
!! TTTTCAATTTTGCTTGAGTT+AGG - chr6_1:82943087-82943106 Msa0895310:CDS 25.0%
!!! ATGGGCACATTTTTTTTTAA+GGG - chr6_1:82943318-82943337 Msa0895310:five_prime_UTR 25.0%
! ACCCATTACAATTCTTTTGT+TGG + chr6_1:82941418-82941437 None:intergenic 30.0%
!!! TGATTTTTTCCCTCAACAAT+TGG - chr6_1:82941506-82941525 Msa0895310:three_prime_UTR 30.0%
TCATATTCTCCAATTGTTGA+GGG + chr6_1:82941518-82941537 None:intergenic 30.0%
ATCATATTCTCCAATTGTTG+AGG + chr6_1:82941519-82941538 None:intergenic 30.0%
ATTGGAGAATATGATGTGTT+TGG - chr6_1:82941524-82941543 Msa0895310:three_prime_UTR 30.0%
! GTGTTTGGAATTGAATATGA+TGG - chr6_1:82941752-82941771 Msa0895310:CDS 30.0%
TTCATTGTTGAATCATTGGA+AGG - chr6_1:82941931-82941950 Msa0895310:intron 30.0%
AAAGAATGGAACTCAAGAAA+AGG - chr6_1:82942096-82942115 Msa0895310:intron 30.0%
AACTCAAGAAAAGGAAATAG+AGG - chr6_1:82942105-82942124 Msa0895310:intron 30.0%
! TCTTTTGATAAGTGCTCAAA+AGG - chr6_1:82942129-82942148 Msa0895310:intron 30.0%
! CTTTTGATAAGTGCTCAAAA+GGG - chr6_1:82942130-82942149 Msa0895310:intron 30.0%
! TGTTTTCTTGCAGAGTAATT+TGG - chr6_1:82942353-82942372 Msa0895310:intron 30.0%
! GTTTTCTTGCAGAGTAATTT+GGG - chr6_1:82942354-82942373 Msa0895310:intron 30.0%
CTTCTTCTTATGTTCATTTC+TGG + chr6_1:82942468-82942487 None:intergenic 30.0%
TTTGTAGATTCCAAAAGCAA+GGG + chr6_1:82942960-82942979 None:intergenic 30.0%
!! AGAAGCACTCAAAAGATATT+AGG - chr6_1:82942990-82943009 Msa0895310:intron 30.0%
! GAATTGACTTTGTACATCTA+CGG + chr6_1:82943173-82943192 None:intergenic 30.0%
!!! GATGGGCACATTTTTTTTTA+AGG - chr6_1:82943317-82943336 Msa0895310:five_prime_UTR 30.0%
! ACCCATTACAATTCTTTTGT+TGG + chr6_1:82941418-82941437 None:intergenic 30.0%
!!! TGATTTTTTCCCTCAACAAT+TGG - chr6_1:82941506-82941525 Msa0895310:three_prime_UTR 30.0%
TCATATTCTCCAATTGTTGA+GGG + chr6_1:82941518-82941537 None:intergenic 30.0%
ATCATATTCTCCAATTGTTG+AGG + chr6_1:82941519-82941538 None:intergenic 30.0%
ATTGGAGAATATGATGTGTT+TGG - chr6_1:82941524-82941543 Msa0895310:three_prime_UTR 30.0%
! GTGTTTGGAATTGAATATGA+TGG - chr6_1:82941752-82941771 Msa0895310:CDS 30.0%
TTCATTGTTGAATCATTGGA+AGG - chr6_1:82941931-82941950 Msa0895310:intron 30.0%
AAAGAATGGAACTCAAGAAA+AGG - chr6_1:82942096-82942115 Msa0895310:intron 30.0%
AACTCAAGAAAAGGAAATAG+AGG - chr6_1:82942105-82942124 Msa0895310:intron 30.0%
! TCTTTTGATAAGTGCTCAAA+AGG - chr6_1:82942129-82942148 Msa0895310:intron 30.0%
! CTTTTGATAAGTGCTCAAAA+GGG - chr6_1:82942130-82942149 Msa0895310:intron 30.0%
! TGTTTTCTTGCAGAGTAATT+TGG - chr6_1:82942353-82942372 Msa0895310:intron 30.0%
! GTTTTCTTGCAGAGTAATTT+GGG - chr6_1:82942354-82942373 Msa0895310:intron 30.0%
CTTCTTCTTATGTTCATTTC+TGG + chr6_1:82942468-82942487 None:intergenic 30.0%
TTTGTAGATTCCAAAAGCAA+GGG + chr6_1:82942960-82942979 None:intergenic 30.0%
!! AGAAGCACTCAAAAGATATT+AGG - chr6_1:82942990-82943009 Msa0895310:intron 30.0%
! GAATTGACTTTGTACATCTA+CGG + chr6_1:82943173-82943192 None:intergenic 30.0%
!!! GATGGGCACATTTTTTTTTA+AGG - chr6_1:82943317-82943336 Msa0895310:five_prime_UTR 30.0%
! GTTGATGAGAAAAAGAAGAG+AGG + chr6_1:82941385-82941404 None:intergenic 35.0%
CATTTGCAACGTTATGAACA+AGG - chr6_1:82941567-82941586 Msa0895310:three_prime_UTR 35.0%
TTGGGAAAAAGATGAAACCA+TGG - chr6_1:82942180-82942199 Msa0895310:CDS 35.0%
AATAACTCCAGCTTCTTCTA+TGG + chr6_1:82942227-82942246 None:intergenic 35.0%
ATAGAAGAAGCTGGAGTTAT+TGG - chr6_1:82942226-82942245 Msa0895310:CDS 35.0%
TGCAGAGTAATTTGGGTAAA+TGG - chr6_1:82942361-82942380 Msa0895310:intron 35.0%
ATGTATCCTTCATGCATAGT+GGG + chr6_1:82942408-82942427 None:intergenic 35.0%
TTAGCAAGGAGTTGGATAAT+TGG - chr6_1:82942442-82942461 Msa0895310:CDS 35.0%
AAGAAATATGCCCATATGCT+TGG - chr6_1:82942853-82942872 Msa0895310:intron 35.0%
!! GAAGGAAGCTTTAGATGAAT+TGG - chr6_1:82942878-82942897 Msa0895310:intron 35.0%
CTTTGTAGATTCCAAAAGCA+AGG + chr6_1:82942961-82942980 None:intergenic 35.0%
!!! TGCTTTTGGAATCTACAAAG+TGG - chr6_1:82942961-82942980 Msa0895310:intron 35.0%
GAATTCTTAGAGTGTAGTTG+AGG - chr6_1:82943126-82943145 Msa0895310:CDS 35.0%
! TTGCTATTCTCTCACTTTGA+TGG - chr6_1:82943299-82943318 Msa0895310:exon 35.0%
TGCTATTCTCTCACTTTGAT+GGG - chr6_1:82943300-82943319 Msa0895310:exon 35.0%
! GTTGATGAGAAAAAGAAGAG+AGG + chr6_1:82941385-82941404 None:intergenic 35.0%
CATTTGCAACGTTATGAACA+AGG - chr6_1:82941567-82941586 Msa0895310:three_prime_UTR 35.0%
TTGGGAAAAAGATGAAACCA+TGG - chr6_1:82942180-82942199 Msa0895310:CDS 35.0%
AATAACTCCAGCTTCTTCTA+TGG + chr6_1:82942227-82942246 None:intergenic 35.0%
ATAGAAGAAGCTGGAGTTAT+TGG - chr6_1:82942226-82942245 Msa0895310:CDS 35.0%
TGCAGAGTAATTTGGGTAAA+TGG - chr6_1:82942361-82942380 Msa0895310:intron 35.0%
ATGTATCCTTCATGCATAGT+GGG + chr6_1:82942408-82942427 None:intergenic 35.0%
TTAGCAAGGAGTTGGATAAT+TGG - chr6_1:82942442-82942461 Msa0895310:CDS 35.0%
AAGAAATATGCCCATATGCT+TGG - chr6_1:82942853-82942872 Msa0895310:intron 35.0%
!! GAAGGAAGCTTTAGATGAAT+TGG - chr6_1:82942878-82942897 Msa0895310:intron 35.0%
CTTTGTAGATTCCAAAAGCA+AGG + chr6_1:82942961-82942980 None:intergenic 35.0%
!!! TGCTTTTGGAATCTACAAAG+TGG - chr6_1:82942961-82942980 Msa0895310:intron 35.0%
GAATTCTTAGAGTGTAGTTG+AGG - chr6_1:82943126-82943145 Msa0895310:CDS 35.0%
! TTGCTATTCTCTCACTTTGA+TGG - chr6_1:82943299-82943318 Msa0895310:exon 35.0%
TGCTATTCTCTCACTTTGAT+GGG - chr6_1:82943300-82943319 Msa0895310:exon 35.0%
! TGTTTGGTTTCTCCTAGAAC+TGG - chr6_1:82941540-82941559 Msa0895310:three_prime_UTR 40.0%
TGCAAATGTCTACCAGTTCT+AGG + chr6_1:82941555-82941574 None:intergenic 40.0%
ATAAGTGCTCAAAAGGGTAG+TGG - chr6_1:82942136-82942155 Msa0895310:intron 40.0%
AGTGGAATGCAGTTTCCAAA+AGG - chr6_1:82942154-82942173 Msa0895310:CDS 40.0%
! TCTTTTTCCCAACCTCCTTT+TGG + chr6_1:82942172-82942191 None:intergenic 40.0%
AGAGAAACCATAGAAGAAGC+TGG - chr6_1:82942217-82942236 Msa0895310:CDS 40.0%
CATGTATCCTTCATGCATAG+TGG + chr6_1:82942409-82942428 None:intergenic 40.0%
ACTCCTTGCTAACAAGCAAA+GGG + chr6_1:82942434-82942453 None:intergenic 40.0%
AACTCCTTGCTAACAAGCAA+AGG + chr6_1:82942435-82942454 None:intergenic 40.0%
! TTTGCTTGTTAGCAAGGAGT+TGG - chr6_1:82942434-82942453 Msa0895310:CDS 40.0%
ATGACACTTGATTAGGCTCA+AGG + chr6_1:82942680-82942699 None:intergenic 40.0%
TGTAATCATGCAGTTGACTG+TGG - chr6_1:82942821-82942840 Msa0895310:intron 40.0%
CTTCCTTCATCCAAGCATAT+GGG + chr6_1:82942866-82942885 None:intergenic 40.0%
TTGACTTTGTACATCTACGG+TGG + chr6_1:82943170-82943189 None:intergenic 40.0%
! TGTTTGGTTTCTCCTAGAAC+TGG - chr6_1:82941540-82941559 Msa0895310:three_prime_UTR 40.0%
TGCAAATGTCTACCAGTTCT+AGG + chr6_1:82941555-82941574 None:intergenic 40.0%
ATAAGTGCTCAAAAGGGTAG+TGG - chr6_1:82942136-82942155 Msa0895310:intron 40.0%
AGTGGAATGCAGTTTCCAAA+AGG - chr6_1:82942154-82942173 Msa0895310:CDS 40.0%
! TCTTTTTCCCAACCTCCTTT+TGG + chr6_1:82942172-82942191 None:intergenic 40.0%
AGAGAAACCATAGAAGAAGC+TGG - chr6_1:82942217-82942236 Msa0895310:CDS 40.0%
CATGTATCCTTCATGCATAG+TGG + chr6_1:82942409-82942428 None:intergenic 40.0%
ACTCCTTGCTAACAAGCAAA+GGG + chr6_1:82942434-82942453 None:intergenic 40.0%
AACTCCTTGCTAACAAGCAA+AGG + chr6_1:82942435-82942454 None:intergenic 40.0%
! TTTGCTTGTTAGCAAGGAGT+TGG - chr6_1:82942434-82942453 Msa0895310:CDS 40.0%
ATGACACTTGATTAGGCTCA+AGG + chr6_1:82942680-82942699 None:intergenic 40.0%
TGTAATCATGCAGTTGACTG+TGG - chr6_1:82942821-82942840 Msa0895310:intron 40.0%
CTTCCTTCATCCAAGCATAT+GGG + chr6_1:82942866-82942885 None:intergenic 40.0%
TTGACTTTGTACATCTACGG+TGG + chr6_1:82943170-82943189 None:intergenic 40.0%
! ACAAGGATGTCGTCAAGTTG+TGG - chr6_1:82941584-82941603 Msa0895310:three_prime_UTR 45.0%
! CAAGGATGTCGTCAAGTTGT+GGG - chr6_1:82941585-82941604 Msa0895310:three_prime_UTR 45.0%
! AAGGATGTCGTCAAGTTGTG+GGG - chr6_1:82941586-82941605 Msa0895310:three_prime_UTR 45.0%
GGAATGCAGTTTCCAAAAGG+AGG - chr6_1:82942157-82942176 Msa0895310:CDS 45.0%
TGCAGTTTCCAAAAGGAGGT+TGG - chr6_1:82942161-82942180 Msa0895310:CDS 45.0%
GCAGTTTCCAAAAGGAGGTT+GGG - chr6_1:82942162-82942181 Msa0895310:CDS 45.0%
! TCTCAAAGCAGCTTGTTCCA+TGG + chr6_1:82942200-82942219 None:intergenic 45.0%
!! ATCCTTCATGCATAGTGGGT+TGG + chr6_1:82942404-82942423 None:intergenic 45.0%
! GTTCCCTTTGCTTGTTAGCA+AGG - chr6_1:82942428-82942447 Msa0895310:CDS 45.0%
ATGCCCATATGCTTGGATGA+AGG - chr6_1:82942860-82942879 Msa0895310:intron 45.0%
GCTTCCTTCATCCAAGCATA+TGG + chr6_1:82942867-82942886 None:intergenic 45.0%
! TAGGCATTCTCCCTTGCTTT+TGG - chr6_1:82942947-82942966 Msa0895310:intron 45.0%
TCTACGGTGGATCACTTCTA+AGG + chr6_1:82943157-82943176 None:intergenic 45.0%
! ACAAGGATGTCGTCAAGTTG+TGG - chr6_1:82941584-82941603 Msa0895310:three_prime_UTR 45.0%
! CAAGGATGTCGTCAAGTTGT+GGG - chr6_1:82941585-82941604 Msa0895310:three_prime_UTR 45.0%
! AAGGATGTCGTCAAGTTGTG+GGG - chr6_1:82941586-82941605 Msa0895310:three_prime_UTR 45.0%
GGAATGCAGTTTCCAAAAGG+AGG - chr6_1:82942157-82942176 Msa0895310:CDS 45.0%
TGCAGTTTCCAAAAGGAGGT+TGG - chr6_1:82942161-82942180 Msa0895310:CDS 45.0%
GCAGTTTCCAAAAGGAGGTT+GGG - chr6_1:82942162-82942181 Msa0895310:CDS 45.0%
! TCTCAAAGCAGCTTGTTCCA+TGG + chr6_1:82942200-82942219 None:intergenic 45.0%
!! ATCCTTCATGCATAGTGGGT+TGG + chr6_1:82942404-82942423 None:intergenic 45.0%
! GTTCCCTTTGCTTGTTAGCA+AGG - chr6_1:82942428-82942447 Msa0895310:CDS 45.0%
ATGCCCATATGCTTGGATGA+AGG - chr6_1:82942860-82942879 Msa0895310:intron 45.0%
GCTTCCTTCATCCAAGCATA+TGG + chr6_1:82942867-82942886 None:intergenic 45.0%
! TAGGCATTCTCCCTTGCTTT+TGG - chr6_1:82942947-82942966 Msa0895310:intron 45.0%
TCTACGGTGGATCACTTCTA+AGG + chr6_1:82943157-82943176 None:intergenic 45.0%
TTATGTCGCAGCGCAGATTG+AGG - chr6_1:82942633-82942652 Msa0895310:intron 50.0%
TTATGTCGCAGCGCAGATTG+AGG - chr6_1:82942633-82942652 Msa0895310:intron 50.0%
CGCCAACCCACTATGCATGA+AGG - chr6_1:82942399-82942418 Msa0895310:CDS 55.0%
TGTCTGAGCGGCTACGATTG+AGG + chr6_1:82942603-82942622 None:intergenic 55.0%
CGCCAACCCACTATGCATGA+AGG - chr6_1:82942399-82942418 Msa0895310:CDS 55.0%
TGTCTGAGCGGCTACGATTG+AGG + chr6_1:82942603-82942622 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 82941291 82943349 82941291 ID=Msa0895310;Name=Msa0895310
chr6_1 mRNA 82941291 82943349 82941291 ID=Msa0895310-mRNA-1;Parent=Msa0895310;Name=Msa0895310-mRNA-1;_AED=0.15;_eAED=0.15;_QI=36|1|1|1|1|1|4|423|228
chr6_1 exon 82941291 82941806 82941291 ID=Msa0895310-mRNA-1:exon:13990;Parent=Msa0895310-mRNA-1
chr6_1 exon 82942146 82942274 82942146 ID=Msa0895310-mRNA-1:exon:13989;Parent=Msa0895310-mRNA-1
chr6_1 exon 82942382 82942565 82942382 ID=Msa0895310-mRNA-1:exon:13988;Parent=Msa0895310-mRNA-1
chr6_1 exon 82943033 82943349 82943033 ID=Msa0895310-mRNA-1:exon:13987;Parent=Msa0895310-mRNA-1
chr6_1 five_prime_UTR 82943314 82943349 82943314 ID=Msa0895310-mRNA-1:five_prime_utr;Parent=Msa0895310-mRNA-1
chr6_1 CDS 82943033 82943313 82943033 ID=Msa0895310-mRNA-1:cds;Parent=Msa0895310-mRNA-1
chr6_1 CDS 82942382 82942565 82942382 ID=Msa0895310-mRNA-1:cds;Parent=Msa0895310-mRNA-1
chr6_1 CDS 82942146 82942274 82942146 ID=Msa0895310-mRNA-1:cds;Parent=Msa0895310-mRNA-1
chr6_1 CDS 82941714 82941806 82941714 ID=Msa0895310-mRNA-1:cds;Parent=Msa0895310-mRNA-1
chr6_1 three_prime_UTR 82941291 82941713 82941291 ID=Msa0895310-mRNA-1:three_prime_utr;Parent=Msa0895310-mRNA-1
Gene Sequence

>Msa0895310

ATGTTGATGTCTGTTATTACTTCTTCACAACAAACTCATCAATTTCTTCTTATTACCTCTCTTCTTTTTCTCATCAACGAAATCAAAACCAACAAAAGAATTGTAATGGGTCTTTTACTTTCAAAGTCTTTGGCTTGTAAATTCTTTTACCCTTTGCTTTTTTCTAAGAAAGTTCATAATGATTTTTTCCCTCAACAATTGGAGAATATGATGTGTTTGGTTTCTCCTAGAACTGGTAGACATTTGCAACGTTATGAACAAGGATGTCGTCAAGTTGTGGGATGCATACCTTATAGATACAAAAAGAATGGAACTCAAGAAAAGGAAATAGAGGTTCTTTTGATAAGTGCTCAAAAGGGTAGTGGAATGCAGTTTCCAAAAGGAGGTTGGGAAAAAGATGAAACCATGGAACAAGCTGCTTTGAGAGAAACCATAGAAGAAGCTGGAGTTATTGGAAGTGTTGAAAGTAATTTGGGTAAATGGTACTATAAGAGCAAACGCCAACCCACTATGCATGAAGGATACATGTTCCCTTTGCTTGTTAGCAAGGAGTTGGATAATTGGCCAGAAATGAACATAAGAAGAAGAAAATGGTTGACTGTGGATGAAGCAAAAGAAATATGCCCATATGCTTGGATGAAGGAAGCTTTAGATGAATTGGTTAGTAGACAAACCAATTCAATCTAA

Protein sequence

>Msa0895310

MLMSVITSSQQTHQFLLITSLLFLINEIKTNKRIVMGLLLSKSLACKFFYPLLFSKKVHNDFFPQQLENMMCLVSPRTGRHLQRYEQGCRQVVGCIPYRYKKNGTQEKEIEVLLISAQKGSGMQFPKGGWEKDETMEQAALRETIEEAGVIGSVESNLGKWYYKSKRQPTMHEGYMFPLLVSKELDNWPEMNIRRRKWLTVDEAKEICPYAWMKEALDELVSRQTNSI*