Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534080 | XP_003604268.2 | 96.154 | 52 | 2 | 0 | 1 | 52 | 1 | 52 | 6.77e-28 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534080 | G7JEH5 | 96.154 | 52 | 2 | 0 | 1 | 52 | 1 | 52 | 3.23e-28 | 105 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000940 | Msa0534080 | 0.805069 | 1.595139e-49 | -8.615850e-47 |
| Msa0006880 | Msa0534080 | 0.828185 | 1.034523e-54 | -8.615850e-47 |
| Msa0008840 | Msa0534080 | 0.809115 | 2.219345e-50 | -8.615850e-47 |
| Msa0026660 | Msa0534080 | 0.827721 | 1.337834e-54 | -8.615850e-47 |
| Msa0027580 | Msa0534080 | 0.823830 | 1.121310e-53 | -8.615850e-47 |
| Msa0033880 | Msa0534080 | 0.816278 | 6.006168e-52 | -8.615850e-47 |
| Msa0036370 | Msa0534080 | 0.806343 | 8.615927e-50 | -8.615850e-47 |
| Msa0053700 | Msa0534080 | 0.807560 | 4.762238e-50 | -8.615850e-47 |
| Msa0055100 | Msa0534080 | 0.813432 | 2.566820e-51 | -8.615850e-47 |
| Msa0070430 | Msa0534080 | 0.818694 | 1.715239e-52 | -8.615850e-47 |
| Msa0072170 | Msa0534080 | 0.836876 | 7.236101e-57 | -8.615850e-47 |
| Msa0075340 | Msa0534080 | 0.824754 | 6.801919e-54 | -8.615850e-47 |
| Msa0090030 | Msa0534080 | 0.820290 | 7.417690e-53 | -8.615850e-47 |
| Msa0094010 | Msa0534080 | 0.803447 | 3.471365e-49 | -8.615850e-47 |
| Msa0097950 | Msa0534080 | 0.813304 | 2.739795e-51 | -8.615850e-47 |
| Msa0100800 | Msa0534080 | 0.831705 | 1.434501e-55 | -8.615850e-47 |
| Msa0101180 | Msa0534080 | 0.831358 | 1.746266e-55 | -8.615850e-47 |
| Msa0104610 | Msa0534080 | 0.802493 | 5.466528e-49 | -8.615850e-47 |
| Msa0108870 | Msa0534080 | 0.830678 | 2.565254e-55 | -8.615850e-47 |
| Msa0115460 | Msa0534080 | 0.811270 | 7.613450e-51 | -8.615850e-47 |
| Msa0120540 | Msa0534080 | 0.826310 | 2.910406e-54 | -8.615850e-47 |
| Msa0121820 | Msa0534080 | 0.800588 | 1.343080e-48 | -8.615850e-47 |
| Msa0126880 | Msa0534080 | 0.804672 | 1.930463e-49 | -8.615850e-47 |
| Msa0127040 | Msa0534080 | 0.819455 | 1.150991e-52 | -8.615850e-47 |
| Msa0127850 | Msa0534080 | 0.805198 | 1.498485e-49 | -8.615850e-47 |
| Msa0131450 | Msa0534080 | 0.828435 | 9.006330e-55 | -8.615850e-47 |
| Msa0140520 | Msa0534080 | -0.814801 | 1.280225e-51 | -8.615850e-47 |
| Msa0145150 | Msa0534080 | 0.818788 | 1.632621e-52 | -8.615850e-47 |
| Msa0165330 | Msa0534080 | 0.808866 | 2.508852e-50 | -8.615850e-47 |
| Msa0166750 | Msa0534080 | 0.843715 | 1.181687e-58 | -8.615850e-47 |
| Msa0171850 | Msa0534080 | 0.809147 | 2.184976e-50 | -8.615850e-47 |
| Msa0174000 | Msa0534080 | 0.833220 | 6.042900e-56 | -8.615850e-47 |
| Msa0177230 | Msa0534080 | 0.831149 | 1.965736e-55 | -8.615850e-47 |
| Msa0182280 | Msa0534080 | 0.801078 | 1.067090e-48 | -8.615850e-47 |
| Msa0183460 | Msa0534080 | 0.818922 | 1.521919e-52 | -8.615850e-47 |
| Msa0193600 | Msa0534080 | 0.855797 | 4.955109e-62 | -8.615850e-47 |
| Msa0198520 | Msa0534080 | 0.817550 | 3.111350e-52 | -8.615850e-47 |
| Msa0198530 | Msa0534080 | 0.813643 | 2.307678e-51 | -8.615850e-47 |
| Msa0198940 | Msa0534080 | 0.810627 | 1.049211e-50 | -8.615850e-47 |
| Msa0208810 | Msa0534080 | 0.820856 | 5.498876e-53 | -8.615850e-47 |
| Msa0211650 | Msa0534080 | 0.806216 | 9.160781e-50 | -8.615850e-47 |
| Msa0212750 | Msa0534080 | -0.816124 | 6.502108e-52 | -8.615850e-47 |
| Msa0215360 | Msa0534080 | 0.824246 | 8.955969e-54 | -8.615850e-47 |
| Msa0221600 | Msa0534080 | 0.839475 | 1.549750e-57 | -8.615850e-47 |
| Msa0229360 | Msa0534080 | 0.804204 | 2.416387e-49 | -8.615850e-47 |
| Msa0394400 | Msa0534080 | 0.806541 | 7.825051e-50 | -8.615850e-47 |
| Msa0398230 | Msa0534080 | 0.813550 | 2.418322e-51 | -8.615850e-47 |
| Msa0403190 | Msa0534080 | 0.831809 | 1.352426e-55 | -8.615850e-47 |
| Msa0416400 | Msa0534080 | 0.809876 | 1.523322e-50 | -8.615850e-47 |
| Msa0419520 | Msa0534080 | 0.829025 | 6.484184e-55 | -8.615850e-47 |
| Msa0431770 | Msa0534080 | 0.831774 | 1.379716e-55 | -8.615850e-47 |
| Msa0436200 | Msa0534080 | 0.805080 | 1.586375e-49 | -8.615850e-47 |
| Msa0439890 | Msa0534080 | 0.808728 | 2.685506e-50 | -8.615850e-47 |
| Msa0449820 | Msa0534080 | 0.808753 | 2.652339e-50 | -8.615850e-47 |
| Msa0462880 | Msa0534080 | 0.811668 | 6.241035e-51 | -8.615850e-47 |
| Msa0465550 | Msa0534080 | 0.803027 | 4.240612e-49 | -8.615850e-47 |
| Msa0474700 | Msa0534080 | 0.812045 | 5.165124e-51 | -8.615850e-47 |
| Msa0478580 | Msa0534080 | 0.827614 | 1.419689e-54 | -8.615850e-47 |
| Msa0479330 | Msa0534080 | 0.805132 | 1.547252e-49 | -8.615850e-47 |
| Msa0241740 | Msa0534080 | 0.818926 | 1.518747e-52 | -8.615850e-47 |
| Msa0242760 | Msa0534080 | 0.817554 | 3.104793e-52 | -8.615850e-47 |
| Msa0252240 | Msa0534080 | 0.817217 | 3.697048e-52 | -8.615850e-47 |
| Msa0262480 | Msa0534080 | 0.801331 | 9.469327e-49 | -8.615850e-47 |
| Msa0265160 | Msa0534080 | 0.805585 | 1.243363e-49 | -8.615850e-47 |
| Msa0267870 | Msa0534080 | 0.802252 | 6.127115e-49 | -8.615850e-47 |
| Msa0273650 | Msa0534080 | 0.854399 | 1.262869e-61 | -8.615850e-47 |
| Msa0280430 | Msa0534080 | 0.818432 | 1.966425e-52 | -8.615850e-47 |
| Msa0291520 | Msa0534080 | 0.821595 | 3.714647e-53 | -8.615850e-47 |
| Msa0308220 | Msa0534080 | 0.822118 | 2.810087e-53 | -8.615850e-47 |
| Msa0310410 | Msa0534080 | 0.811975 | 5.350945e-51 | -8.615850e-47 |
| Msa0319330 | Msa0534080 | 0.803169 | 3.962940e-49 | -8.615850e-47 |
| Msa0321170 | Msa0534080 | 0.817157 | 3.814396e-52 | -8.615850e-47 |
| Msa0321190 | Msa0534080 | 0.803134 | 4.029503e-49 | -8.615850e-47 |
| Msa0335320 | Msa0534080 | -0.802552 | 5.313531e-49 | -8.615850e-47 |
| Msa0337510 | Msa0534080 | 0.817457 | 3.264628e-52 | -8.615850e-47 |
| Msa0358510 | Msa0534080 | 0.836848 | 7.355439e-57 | -8.615850e-47 |
| Msa0505150 | Msa0534080 | 0.804660 | 1.941661e-49 | -8.615850e-47 |
| Msa0527910 | Msa0534080 | 0.818696 | 1.712787e-52 | -8.615850e-47 |
| Msa0534080 | Msa0536790 | 0.800166 | 1.637529e-48 | -8.615850e-47 |
| Msa0534080 | Msa0537530 | 0.821127 | 4.761490e-53 | -8.615850e-47 |
| Msa0534080 | Msa0550570 | 0.823255 | 1.528004e-53 | -8.615850e-47 |
| Msa0534080 | Msa0578090 | 0.827793 | 1.285629e-54 | -8.615850e-47 |
| Msa0534080 | Msa0586850 | 0.827461 | 1.544317e-54 | -8.615850e-47 |
| Msa0534080 | Msa0593700 | 0.809826 | 1.561913e-50 | -8.615850e-47 |
| Msa0534080 | Msa0606810 | 0.811868 | 5.645165e-51 | -8.615850e-47 |
| Msa0534080 | Msa0609000 | 0.808398 | 3.157888e-50 | -8.615850e-47 |
| Msa0534080 | Msa0609970 | 0.800651 | 1.304262e-48 | -8.615850e-47 |
| Msa0534080 | Msa0610390 | 0.813023 | 3.156989e-51 | -8.615850e-47 |
| Msa0534080 | Msa0617260 | 0.809399 | 1.928994e-50 | -8.615850e-47 |
| Msa0534080 | Msa0619180 | 0.810792 | 9.665579e-51 | -8.615850e-47 |
| Msa0534080 | Msa0619920 | 0.809579 | 1.765188e-50 | -8.615850e-47 |
| Msa0534080 | Msa0625790 | 0.819701 | 1.011502e-52 | -8.615850e-47 |
| Msa0534080 | Msa0626680 | 0.805826 | 1.106375e-49 | -8.615850e-47 |
| Msa0534080 | Msa0626940 | 0.806953 | 6.404932e-50 | -8.615850e-47 |
| Msa0534080 | Msa0646130 | 0.811507 | 6.764130e-51 | -8.615850e-47 |
| Msa0534080 | Msa0652300 | 0.822591 | 2.182069e-53 | -8.615850e-47 |
| Msa0534080 | Msa0659140 | 0.801830 | 7.480985e-49 | -8.615850e-47 |
| Msa0534080 | Msa0659990 | 0.819809 | 9.558168e-53 | -8.615850e-47 |
| Msa0534080 | Msa0664760 | 0.816737 | 4.739243e-52 | -8.615850e-47 |
| Msa0534080 | Msa0687230 | 0.839858 | 1.231944e-57 | -8.615850e-47 |
| Msa0534080 | Msa0704800 | 0.823738 | 1.178175e-53 | -8.615850e-47 |
| Msa0534080 | Msa0706390 | 0.811087 | 8.343383e-51 | -8.615850e-47 |
| Msa0534080 | Msa0707390 | 0.816660 | 4.930709e-52 | -8.615850e-47 |
| Msa0534080 | Msa0711490 | 0.805501 | 1.294676e-49 | -8.615850e-47 |
| Msa0534080 | Msa0720370 | 0.803759 | 2.990958e-49 | -8.615850e-47 |
| Msa0534080 | Msa0735310 | 0.809979 | 1.447506e-50 | -8.615850e-47 |
| Msa0534080 | Msa0742510 | 0.807514 | 4.870614e-50 | -8.615850e-47 |
| Msa0534080 | Msa0744090 | 0.827657 | 1.385878e-54 | -8.615850e-47 |
| Msa0534080 | Msa0753770 | 0.818469 | 1.929044e-52 | -8.615850e-47 |
| Msa0534080 | Msa0756930 | 0.819284 | 1.259342e-52 | -8.615850e-47 |
| Msa0534080 | Msa0766670 | 0.814563 | 1.445557e-51 | -8.615850e-47 |
| Msa0534080 | Msa0795660 | 0.821458 | 3.995033e-53 | -8.615850e-47 |
| Msa0534080 | Msa0814250 | 0.849082 | 4.062960e-60 | -8.615850e-47 |
| Msa0534080 | Msa0814320 | 0.800853 | 1.185828e-48 | -8.615850e-47 |
| Msa0534080 | Msa0818770 | 0.811629 | 6.362641e-51 | -8.615850e-47 |
| Msa0534080 | Msa0820530 | -0.809015 | 2.331439e-50 | -8.615850e-47 |
| Msa0534080 | Msa0822170 | 0.812353 | 4.423982e-51 | -8.615850e-47 |
| Msa0534080 | Msa0824730 | 0.807422 | 5.095137e-50 | -8.615850e-47 |
| Msa0534080 | Msa0825270 | 0.810469 | 1.135085e-50 | -8.615850e-47 |
| Msa0534080 | Msa0825280 | 0.828546 | 8.464354e-55 | -8.615850e-47 |
| Msa0534080 | Msa0836500 | 0.805632 | 1.215729e-49 | -8.615850e-47 |
| Msa0534080 | Msa0851470 | 0.822235 | 2.639951e-53 | -8.615850e-47 |
| Msa0534080 | Msa0869010 | 0.849125 | 3.952355e-60 | -8.615850e-47 |
| Msa0534080 | Msa0888940 | 0.804574 | 2.023866e-49 | -8.615850e-47 |
| Msa0534080 | Msa0895310 | 0.812497 | 4.115824e-51 | -8.615850e-47 |
| Msa0534080 | Msa0921870 | 0.860163 | 2.501508e-63 | -8.615850e-47 |
| Msa0534080 | Msa0924150 | -0.805861 | 1.087803e-49 | -8.615850e-47 |
| Msa0534080 | Msa0928120 | 0.820658 | 6.106519e-53 | -8.615850e-47 |
| Msa0534080 | Msa0939570 | 0.803626 | 3.186817e-49 | -8.615850e-47 |
| Msa0534080 | Msa0943170 | 0.800804 | 1.213894e-48 | -8.615850e-47 |
| Msa0534080 | Msa0957450 | -0.805376 | 1.375153e-49 | -8.615850e-47 |
| Msa0534080 | Msa0959840 | 0.808517 | 2.979055e-50 | -8.615850e-47 |
| Msa0534080 | Msa0963020 | 0.818786 | 1.634104e-52 | -8.615850e-47 |
| Msa0534080 | Msa0976330 | 0.827302 | 1.686744e-54 | -8.615850e-47 |
| Msa0534080 | Msa0980940 | 0.811038 | 8.550620e-51 | -8.615850e-47 |
| Msa0534080 | Msa0981430 | 0.811568 | 6.560351e-51 | -8.615850e-47 |
| Msa0534080 | Msa1003440 | 0.825901 | 3.640590e-54 | -8.615850e-47 |
| Msa0534080 | Msa1025940 | 0.830832 | 2.351165e-55 | -8.615850e-47 |
| Msa0534080 | Msa1029970 | 0.805394 | 1.363735e-49 | -8.615850e-47 |
| Msa0534080 | Msa1030930 | 0.835055 | 2.095858e-56 | -8.615850e-47 |
| Msa0534080 | Msa1033520 | 0.816683 | 4.873546e-52 | -8.615850e-47 |
| Msa0534080 | Msa1036740 | 0.803694 | 3.084859e-49 | -8.615850e-47 |
| Msa0534080 | Msa1047860 | 0.817924 | 2.562579e-52 | -8.615850e-47 |
| Msa0534080 | Msa1057420 | 0.806392 | 8.412227e-50 | -8.615850e-47 |
| Msa0534080 | Msa1070050 | 0.835748 | 1.400866e-56 | -8.615850e-47 |
| Msa0534080 | Msa1070390 | 0.812251 | 4.657501e-51 | -8.615850e-47 |
| Msa0534080 | Msa1073400 | 0.831874 | 1.303294e-55 | -8.615850e-47 |
| Msa0534080 | Msa1083880 | 0.839070 | 1.973515e-57 | -8.615850e-47 |
| Msa0534080 | Msa1089740 | -0.803251 | 3.810347e-49 | -8.615850e-47 |
| Msa0534080 | Msa1093330 | 0.821236 | 4.496027e-53 | -8.615850e-47 |
| Msa0534080 | Msa1113590 | 0.808789 | 2.605801e-50 | -8.615850e-47 |
| Msa0534080 | Msa1113880 | 0.814638 | 1.391537e-51 | -8.615850e-47 |
| Msa0534080 | Msa1114040 | 0.821180 | 4.630930e-53 | -8.615850e-47 |
| Msa0534080 | Msa1126850 | 0.802365 | 5.807805e-49 | -8.615850e-47 |
| Msa0534080 | Msa1133630 | 0.806706 | 7.220567e-50 | -8.615850e-47 |
| Msa0534080 | Msa1160360 | 0.805463 | 1.318995e-49 | -8.615850e-47 |
| Msa0534080 | Msa1166870 | 0.806195 | 9.256439e-50 | -8.615850e-47 |
| Msa0534080 | Msa1173900 | 0.804500 | 2.097056e-49 | -8.615850e-47 |
| Msa0534080 | Msa1176980 | 0.816214 | 6.206680e-52 | -8.615850e-47 |
| Msa0534080 | Msa1178050 | 0.808206 | 3.470751e-50 | -8.615850e-47 |
| Msa0534080 | Msa1179980 | 0.805458 | 1.322222e-49 | -8.615850e-47 |
| Msa0534080 | Msa1181170 | -0.818543 | 1.855127e-52 | -8.615850e-47 |
| Msa0534080 | Msa1184370 | 0.814881 | 1.229005e-51 | -8.615850e-47 |
| Msa0534080 | Msa1192850 | 0.835016 | 2.143877e-56 | -8.615850e-47 |
| Msa0534080 | Msa1199290 | 0.808737 | 2.673080e-50 | -8.615850e-47 |
| Msa0534080 | Msa1201830 | 0.822047 | 2.919693e-53 | -8.615850e-47 |
| Msa0534080 | Msa1203900 | 0.813416 | 2.587619e-51 | -8.615850e-47 |
| Msa0534080 | Msa1205850 | 0.815735 | 7.936829e-52 | -8.615850e-47 |
| Msa0534080 | Msa1207730 | 0.827986 | 1.155438e-54 | -8.615850e-47 |
| Msa0534080 | Msa1211050 | -0.805937 | 1.048641e-49 | -8.615850e-47 |
| Msa0534080 | Msa1211830 | 0.808287 | 3.335808e-50 | -8.615850e-47 |
| Msa0534080 | Msa1226610 | 0.816519 | 5.304754e-52 | -8.615850e-47 |
| Msa0534080 | Msa1227690 | 0.833122 | 6.393376e-56 | -8.615850e-47 |
| Msa0534080 | Msa1246530 | -0.800685 | 1.283267e-48 | -8.615850e-47 |
| Msa0534080 | Msa1253400 | 0.800178 | 1.628323e-48 | -8.615850e-47 |
| Msa0534080 | Msa1253810 | 0.807578 | 4.720985e-50 | -8.615850e-47 |
| Msa0534080 | Msa1256770 | 0.807217 | 5.629240e-50 | -8.615850e-47 |
| Msa0534080 | Msa1270620 | 0.812519 | 4.069290e-51 | -8.615850e-47 |
| Msa0534080 | Msa1270690 | 0.808291 | 3.329286e-50 | -8.615850e-47 |
| Msa0534080 | Msa1280620 | 0.803505 | 3.376334e-49 | -8.615850e-47 |
| Msa0534080 | Msa1286510 | 0.808627 | 2.822472e-50 | -8.615850e-47 |
| Msa0534080 | Msa1294840 | 0.825761 | 3.930322e-54 | -8.615850e-47 |
| Msa0534080 | Msa1294960 | 0.801915 | 7.188126e-49 | -8.615850e-47 |
| Msa0534080 | Msa1296300 | 0.840788 | 7.041299e-58 | -8.615850e-47 |
| Msa0534080 | Msa1299700 | 0.808903 | 2.463286e-50 | -8.615850e-47 |
| Msa0534080 | Msa1306990 | 0.803942 | 2.739183e-49 | -8.615850e-47 |
| Msa0534080 | Msa1310690 | 0.822698 | 2.061284e-53 | -8.615850e-47 |
| Msa0534080 | Msa1323990 | 0.816017 | 6.866628e-52 | -8.615850e-47 |
| Msa0534080 | Msa1325930 | 0.800445 | 1.436280e-48 | -8.615850e-47 |
| Msa0534080 | Msa1327490 | 0.823568 | 1.291625e-53 | -8.615850e-47 |
| Msa0534080 | Msa1329450 | 0.826170 | 3.141861e-54 | -8.615850e-47 |
| Msa0534080 | Msa1340830 | 0.809297 | 2.028886e-50 | -8.615850e-47 |
| Msa0534080 | Msa1344850 | 0.809867 | 1.530372e-50 | -8.615850e-47 |
| Msa0534080 | Msa1363700 | 0.810165 | 1.320338e-50 | -8.615850e-47 |
| Msa0534080 | Msa1363860 | 0.804307 | 2.300699e-49 | -8.615850e-47 |
| Msa0534080 | Msa1372310 | 0.824719 | 6.930681e-54 | -8.615850e-47 |
| Msa0534080 | Msa1373880 | 0.807637 | 4.585172e-50 | -8.615850e-47 |
| Msa0534080 | Msa1380970 | 0.802689 | 4.979698e-49 | -8.615850e-47 |
| Msa0534080 | Msa1390100 | 0.808202 | 3.477113e-50 | -8.615850e-47 |
| Msa0534080 | Msa1393800 | 0.804818 | 1.799439e-49 | -8.615850e-47 |
| Msa0534080 | Msa1396940 | 0.806237 | 9.067581e-50 | -8.615850e-47 |
| Msa0534080 | Msa1397940 | 0.818329 | 2.075241e-52 | -8.615850e-47 |
| Msa0534080 | Msa1421620 | 0.809462 | 1.869768e-50 | -8.615850e-47 |
| Msa0534080 | Msa1438450 | 0.814942 | 1.191444e-51 | -8.615850e-47 |
| Msa0534080 | Msa1438640 | 0.828930 | 6.835335e-55 | -8.615850e-47 |
| Msa0534080 | Msa1457790 | 0.813361 | 2.661738e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534080 | MtrunA17_Chr4g0001601 | 96.154 | 52 | 2 | 0 | 1 | 52 | 1 | 52 | 6.23e-32 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534080 | AT1G16000.1 | 42.857 | 56 | 28 | 1 | 1 | 52 | 1 | 56 | 3.30e-11 | 53.9 |
Find 11 sgRNAs with CRISPR-Local
Find 19 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGCGGCGAAGGTGGATT+TGG | 0.337625 | 4_1:-9443292 | Msa0534080:CDS |
| CTTACTTATAAACTATGTTC+CGG | 0.434677 | 4_1:+9442922 | None:intergenic |
| GCGAAGGTGGATTTGGATCA+AGG | 0.444650 | 4_1:-9443285 | Msa0534080:CDS |
| GGCATCATCATATCCAATAT+AGG | 0.449136 | 4_1:+9442943 | None:intergenic |
| GCAAAAGTGAAGAGCGGCGA+AGG | 0.559375 | 4_1:-9443301 | Msa0534080:CDS |
| TATATTGGATATGATGATGC+CGG | 0.563965 | 4_1:-9442941 | Msa0534080:CDS |
| AAAGTGAAGAGCGGCGAAGG+TGG | 0.576268 | 4_1:-9443298 | Msa0534080:CDS |
| CCATGGTTTCTTATGAACAG+AGG | 0.615850 | 4_1:-9443184 | Msa0534080:intron |
| TTGAATCAAATTCTATATAG+CGG | 0.633543 | 4_1:-9443262 | Msa0534080:CDS |
| CCTCTGTTCATAAGAAACCA+TGG | 0.639570 | 4_1:+9443184 | None:intergenic |
| GCAAAAGCAAAAGTGAAGAG+CGG | 0.660636 | 4_1:-9443307 | Msa0534080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAGGTTTATATCAATAAT+GGG | - | chr4_1:9443160-9443179 | Msa0534080:intron | 15.0% |
| !!! | AAAAGTTATTTCTATAATTG+AGG | + | chr4_1:9443274-9443293 | None:intergenic | 15.0% |
| !! | TTGAATCAAATTCTATATAG+CGG | - | chr4_1:9442984-9443003 | Msa0534080:intron | 20.0% |
| !! | GTTTCAAAGTTATTAACTTT+AGG | - | chr4_1:9443143-9443162 | Msa0534080:intron | 20.0% |
| !!! | CTTTAGGTTTATATCAATAA+TGG | - | chr4_1:9443159-9443178 | Msa0534080:intron | 20.0% |
| ! | CTATAATTGAGGTTGAAATA+AGG | + | chr4_1:9443263-9443282 | None:intergenic | 25.0% |
| !! | TTTTGTTAAGAGTCCTATAT+TGG | - | chr4_1:9443290-9443309 | Msa0534080:CDS | 25.0% |
| AAACCATGGTACAGAAAAAA+CGG | + | chr4_1:9443051-9443070 | None:intergenic | 30.0% | |
| ! | TATATTGGATATGATGATGC+CGG | - | chr4_1:9443305-9443324 | Msa0534080:CDS | 30.0% |
| GGCATCATCATATCCAATAT+AGG | + | chr4_1:9443306-9443325 | None:intergenic | 35.0% | |
| GCAAAAGCAAAAGTGAAGAG+CGG | - | chr4_1:9442939-9442958 | Msa0534080:CDS | 40.0% | |
| CCTCTGTTCATAAGAAACCA+TGG | + | chr4_1:9443065-9443084 | None:intergenic | 40.0% | |
| CCATGGTTTCTTATGAACAG+AGG | - | chr4_1:9443062-9443081 | Msa0534080:intron | 40.0% | |
| !! | GAGAAGAAGCATGTTTTCGC+TGG | - | chr4_1:9443008-9443027 | Msa0534080:intron | 45.0% |
| !!! | CTGCCGTTTTTTCTGTACCA+TGG | - | chr4_1:9443045-9443064 | Msa0534080:intron | 45.0% |
| ! | GCGAAGGTGGATTTGGATCA+AGG | - | chr4_1:9442961-9442980 | Msa0534080:CDS | 50.0% |
| GCAAAAGTGAAGAGCGGCGA+AGG | - | chr4_1:9442945-9442964 | Msa0534080:CDS | 55.0% | |
| AAAGTGAAGAGCGGCGAAGG+TGG | - | chr4_1:9442948-9442967 | Msa0534080:CDS | 55.0% | |
| ! | AAGAGCGGCGAAGGTGGATT+TGG | - | chr4_1:9442954-9442973 | Msa0534080:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 9442927 | 9443341 | 9442927 | ID=Msa0534080;Name=Msa0534080 |
| chr4_1 | mRNA | 9442927 | 9443341 | 9442927 | ID=Msa0534080-mRNA-1;Parent=Msa0534080;Name=Msa0534080-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|0.5|1|1|2|0|71 |
| chr4_1 | exon | 9443185 | 9443341 | 9443185 | ID=Msa0534080-mRNA-1:exon:3095;Parent=Msa0534080-mRNA-1 |
| chr4_1 | exon | 9442927 | 9442985 | 9442927 | ID=Msa0534080-mRNA-1:exon:3094;Parent=Msa0534080-mRNA-1 |
| chr4_1 | CDS | 9443185 | 9443341 | 9443185 | ID=Msa0534080-mRNA-1:cds;Parent=Msa0534080-mRNA-1 |
| chr4_1 | CDS | 9442927 | 9442985 | 9442927 | ID=Msa0534080-mRNA-1:cds;Parent=Msa0534080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
