AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1087210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087210 MtrunA17_Chr5g0395001 95.833 168 7 0 1 168 1 168 9.31e-110 310
Msa1087210 MtrunA17_Chr1g0205201 65.455 165 36 3 1 164 1 145 2.50e-65 197
Msa1087210 MtrunA17_Chr1g0185321 53.073 179 67 3 1 162 1 179 3.39e-38 129
Msa1087210 MtrunA17_Chr7g0260061 51.701 147 64 4 1 141 1 146 4.34e-38 128
Msa1087210 MtrunA17_Chr1g0205181 50.000 150 52 4 1 149 1 128 1.31e-37 126
Msa1087210 MtrunA17_Chr1g0205191 61.682 107 39 1 1 107 1 105 3.43e-32 111
Msa1087210 MtrunA17_Chr1g0201291 57.955 88 34 2 1 87 1 86 8.76e-25 91.7
Msa1087210 MtrunA17_Chr3g0118471 42.353 85 46 2 24 105 46 130 7.93e-16 71.6
Msa1087210 MtrunA17_Chr5g0429901 34.127 126 69 4 7 119 4 128 9.17e-16 71.2
Msa1087210 MtrunA17_Chr2g0278971 35.606 132 73 5 7 127 48 178 1.11e-14 68.9
Msa1087210 MtrunA17_Chr2g0278981 35.714 98 60 2 25 120 32 128 6.16e-13 63.5
Msa1087210 MtrunA17_Chr8g0378461 31.092 119 72 3 25 134 33 150 1.88e-11 59.7
Msa1087210 MtrunA17_Chr6g0484651 39.437 71 42 1 28 98 43 112 2.06e-11 58.2
Msa1087210 MtrunA17_Chr5g0394991 33.571 140 81 7 1 130 1 138 2.07e-11 60.1
Msa1087210 MtrunA17_Chr3g0121381 36.486 74 46 1 25 97 28 101 7.48e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087210 AT3G22600.1 54.335 173 66 6 5 168 2 170 3.10e-51 162
Msa1087210 AT4G14815.1 48.125 160 67 4 5 163 2 146 1.57e-39 132
Msa1087210 AT2G48130.2 42.286 175 86 5 1 162 1 173 1.00e-32 115
Msa1087210 AT2G48130.6 42.286 175 86 5 1 162 1 173 1.00e-32 115
Msa1087210 AT2G48130.4 42.286 175 86 5 1 162 1 173 1.00e-32 115
Msa1087210 AT2G48130.5 42.286 175 86 5 1 162 1 173 1.00e-32 115
Msa1087210 AT2G48130.1 42.286 175 86 5 1 162 1 173 1.00e-32 115
Msa1087210 AT2G48130.3 42.286 175 86 5 1 162 1 173 1.00e-32 115
Msa1087210 AT1G03103.1 41.520 171 83 6 6 161 1 169 7.72e-28 102
Msa1087210 AT5G09370.2 40.000 90 50 2 26 113 26 113 5.47e-17 73.2
Msa1087210 AT5G09370.1 40.000 90 50 2 26 113 26 113 5.55e-17 73.9
Msa1087210 AT5G09370.3 40.000 90 50 2 26 113 26 113 5.72e-17 73.9
Msa1087210 AT3G43720.2 36.306 157 76 5 21 160 31 180 1.14e-16 73.9
Msa1087210 AT3G43720.1 36.076 158 77 5 21 160 31 182 5.16e-16 72.4
Msa1087210 AT1G55260.2 25.275 182 116 5 1 164 44 223 6.09e-15 70.1
Msa1087210 AT2G13820.1 27.711 166 112 5 1 161 1 163 9.19e-15 68.6
Msa1087210 AT2G13820.3 27.711 166 112 5 1 161 13 175 1.13e-14 68.6
Msa1087210 AT1G55260.1 28.205 156 104 4 1 149 44 198 2.33e-14 68.6
Msa1087210 AT4G08670.1 33.951 162 87 6 26 168 46 206 3.21e-14 67.8
Msa1087210 AT2G13820.2 31.034 116 74 4 1 113 1 113 8.04e-14 65.1
Msa1087210 AT2G44290.1 31.875 160 91 6 6 149 9 166 6.45e-13 64.3
Msa1087210 AT2G48140.1 34.884 129 66 5 8 129 4 121 1.24e-11 60.8
Msa1087210 AT3G22580.1 38.739 111 56 4 5 105 2 110 2.10e-11 58.5
Msa1087210 AT2G48140.2 35.965 114 65 4 8 114 4 116 2.61e-11 58.5
Msa1087210 AT2G44300.1 39.726 73 43 1 25 96 32 104 5.00e-11 59.3
Msa1087210 AT1G36150.1 32.174 115 75 2 26 138 43 156 8.63e-11 59.3

Find 72 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCCGTTGGTTCTTATTT+TGG 0.199878 7_2:+87814058 Msa1087210:CDS
CAGCAAAATGAATATGAGTT+TGG 0.304193 7_2:+87813271 Msa1087210:CDS
TGTGAAGACAATGGTGGTTT+TGG 0.312241 7_2:-87813151 None:intergenic
AATGAATATGAGTTTGGTTT+TGG 0.324175 7_2:+87813277 Msa1087210:CDS
GTTCCTGCTGGTGAGTCTGC+TGG 0.326138 7_2:-87813835 None:intergenic
GTACCTGATGGAACTGAGTT+TGG 0.355549 7_2:-87813871 None:intergenic
AATTCCTCAACCCCGTCTTC+AGG 0.363035 7_2:+87813395 Msa1087210:CDS
TTCCTGCTGGTGAGTCTGCT+GGG 0.376602 7_2:-87813834 None:intergenic
AGTCAGTGTAAAACTAATAA+TGG 0.381064 7_2:+87813569 Msa1087210:CDS
TTGAAATTTGTGTGTTATCA+TGG 0.392639 7_2:+87814305 Msa1087210:three_prime_UTR
GCCTATGTCAGGTTCTCGGC+GGG 0.418113 7_2:+87813462 Msa1087210:CDS
CAAAAGAATAGCATTTCAAA+TGG 0.424229 7_2:-87814131 None:intergenic
GAACATACTGATTCTCAGTT+GGG 0.431602 7_2:+87814105 Msa1087210:exon
ATCAAAGTCCCTTGTGTTGA+AGG 0.438498 7_2:+87814191 Msa1087210:three_prime_UTR
GACTCTGCTTCTGTTCCTGC+TGG 0.439322 7_2:-87813847 None:intergenic
TTTGCATAAAACAATTCAAA+TGG 0.442092 7_2:+87813244 Msa1087210:exon
AGCCTTGCCTGGTGCTTGCA+AGG 0.452642 7_2:+87813529 Msa1087210:CDS
TGAACATACTGATTCTCAGT+TGG 0.466025 7_2:+87814104 Msa1087210:exon
TCCATCACCGGTTGAGGGAG+TGG 0.468250 7_2:-87814006 None:intergenic
TCAAAATCCACTCCCTCAAC+CGG 0.469317 7_2:+87813999 Msa1087210:CDS
TTTACACTGACTGGTGGGTG+GGG 0.471462 7_2:-87813558 None:intergenic
GGATGATCCATCACCGGTTG+AGG 0.472460 7_2:-87814012 None:intergenic
CAGCTTGATTGAATTTCCAC+TGG 0.474292 7_2:-87814033 None:intergenic
GTTTGCACCTTGCAAGCACC+AGG 0.476162 7_2:-87813536 None:intergenic
TTGAGCAGCATCCTGAAGAC+GGG 0.489604 7_2:-87813406 None:intergenic
TCCACTCCCTCAACCGGTGA+TGG 0.490607 7_2:+87814005 Msa1087210:CDS
TATAGTTAAGACAAGGTGAT+AGG 0.493717 7_2:-87813364 None:intergenic
CTATGTCAGGTTCTCGGCGG+GGG 0.499514 7_2:+87813464 Msa1087210:CDS
ACTCAGGCTCTAGCCTTGCC+TGG 0.500358 7_2:+87813518 Msa1087210:CDS
CACCTTGCAAGCACCAGGCA+AGG 0.514952 7_2:-87813531 None:intergenic
CTATGCCTATGTCAGGTTCT+CGG 0.519779 7_2:+87813458 Msa1087210:CDS
ATCGAGTTGTACAAATGTCT+TGG 0.528842 7_2:+87813337 Msa1087210:CDS
CCTTGTCTTAACTATATCAC+AGG 0.529529 7_2:+87813371 Msa1087210:CDS
AATCAAGCTGTCAATTCCGT+TGG 0.530988 7_2:+87814046 Msa1087210:CDS
AAAAGAATAGCATTTCAAAT+GGG 0.533508 7_2:-87814130 None:intergenic
TCTCCAAACTCAGTTCCATC+AGG 0.538578 7_2:+87813868 Msa1087210:CDS
TCAAAGTCCCTTGTGTTGAA+GGG 0.544913 7_2:+87814192 Msa1087210:three_prime_UTR
GCATCCTGAAGACGGGGTTG+AGG 0.545184 7_2:-87813399 None:intergenic
GAAAACCTTGGTATAGACCT+TGG 0.545588 7_2:-87813215 None:intergenic
ACAACCACTATGCCTATGTC+AGG 0.550990 7_2:+87813451 Msa1087210:CDS
TGTTCAGAAAACTGAGGCAT+AGG 0.555263 7_2:-87814087 None:intergenic
TCCACTGGATGATCCATCAC+CGG 0.557164 7_2:-87814018 None:intergenic
TTTGAGCAGCATCCTGAAGA+CGG 0.563609 7_2:-87813407 None:intergenic
TGCAAATGTGTTGAAAACCT+TGG 0.565712 7_2:-87813227 None:intergenic
GATGATCCATCACCGGTTGA+GGG 0.571557 7_2:-87814011 None:intergenic
AAAATCACGTAACCCAATAG+AGG 0.575709 7_2:-87814236 None:intergenic
TCCCCAGCAGACTCACCAGC+AGG 0.577866 7_2:+87813832 Msa1087210:CDS
CTGCTCAAACCTTGCCAGTG+TGG 0.578926 7_2:+87813421 Msa1087210:CDS
CTGACAATATTAAGTTGATG+TGG 0.579771 7_2:-87813086 None:intergenic
GTGAATTCACCACACTGGCA+AGG 0.582240 7_2:-87813430 None:intergenic
TCTCCTTTATGAATAAAACA+TGG 0.582589 7_2:+87814281 Msa1087210:three_prime_UTR
GTAATCGCAATGTTGTGCGC+TGG 0.583284 7_2:+87813302 Msa1087210:CDS
TCCTGCTGGTGAGTCTGCTG+GGG 0.602035 7_2:-87813833 None:intergenic
TGCCTATGTCAGGTTCTCGG+CGG 0.603440 7_2:+87813461 Msa1087210:CDS
CCCCGCCGAGAACCTGACAT+AGG 0.604243 7_2:-87813463 None:intergenic
AATCAGCATCAATCAAACTC+AGG 0.612879 7_2:+87813502 Msa1087210:CDS
AGAACCTGACATAGGCATAG+TGG 0.618190 7_2:-87813455 None:intergenic
TGTTTACTCTGTGAAGACAA+TGG 0.620490 7_2:-87813160 None:intergenic
ATATCTCGTTAGATAGTAGG+AGG 0.621459 7_2:+87813053 None:intergenic
CCTATGTCAGGTTCTCGGCG+GGG 0.623545 7_2:+87813463 Msa1087210:CDS
AGACTGAACCCTTCAACACA+AGG 0.628092 7_2:-87814200 None:intergenic
GACTGAACCCTTCAACACAA+GGG 0.644958 7_2:-87814199 None:intergenic
GCTGCCAAAATAAGAACCAA+CGG 0.650717 7_2:-87814062 None:intergenic
TGACAATATTAAGTTGATGT+GGG 0.657518 7_2:-87813085 None:intergenic
ACCGGTGATGGATCATCCAG+TGG 0.660594 7_2:+87814017 Msa1087210:CDS
CCTGTGATATAGTTAAGACA+AGG 0.669942 7_2:-87813371 None:intergenic
CTTGTCTTAACTATATCACA+GGG 0.674749 7_2:+87813372 Msa1087210:CDS
ATATACCAAGGTCTATACCA+AGG 0.695506 7_2:+87813210 Msa1087210:five_prime_UTR
TGGTTGTGAATTCACCACAC+TGG 0.698930 7_2:-87813435 None:intergenic
TGAGCAGCATCCTGAAGACG+GGG 0.700847 7_2:-87813405 None:intergenic
TTACTCTGTGAAGACAATGG+TGG 0.704767 7_2:-87813157 None:intergenic
TCAGTATGTTCAGAAAACTG+AGG 0.728921 7_2:-87814093 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATAGTTTAGAATAT+GGG - chr7_2:87813774-87813793 None:intergenic 10.0%
!!! AAATATATAGTTTAGAATAT+GGG - chr7_2:87813774-87813793 None:intergenic 10.0%
!!! GAAATATATAGTTTAGAATA+TGG - chr7_2:87813775-87813794 None:intergenic 15.0%
!!! GAAATATATAGTTTAGAATA+TGG - chr7_2:87813775-87813794 None:intergenic 15.0%
!! TTTGCATAAAACAATTCAAA+TGG + chr7_2:87813244-87813263 Msa1087210:exon 20.0%
!! CAAATGAATTTCAACTTAAA+TGG - chr7_2:87813968-87813987 None:intergenic 20.0%
!! AAAAGAATAGCATTTCAAAT+GGG - chr7_2:87814133-87814152 None:intergenic 20.0%
!!! AATCCATGTTTTATTCATAA+AGG - chr7_2:87814287-87814306 None:intergenic 20.0%
!! TTTGCATAAAACAATTCAAA+TGG + chr7_2:87813244-87813263 Msa1087210:exon 20.0%
!! CAAATGAATTTCAACTTAAA+TGG - chr7_2:87813968-87813987 None:intergenic 20.0%
!! AAAAGAATAGCATTTCAAAT+GGG - chr7_2:87814133-87814152 None:intergenic 20.0%
!!! AATCCATGTTTTATTCATAA+AGG - chr7_2:87814287-87814306 None:intergenic 20.0%
!!! TGACAATATTAAGTTGATGT+GGG - chr7_2:87813088-87813107 None:intergenic 25.0%
! AACCAAAAAAGAATATACCA+AGG + chr7_2:87813198-87813217 Msa1087210:five_prime_UTR 25.0%
!!! AATGAATATGAGTTTGGTTT+TGG + chr7_2:87813277-87813296 Msa1087210:CDS 25.0%
!!! ATTATTAGTTTTACACTGAC+TGG - chr7_2:87813570-87813589 None:intergenic 25.0%
! AGTCAGTGTAAAACTAATAA+TGG + chr7_2:87813569-87813588 Msa1087210:CDS 25.0%
! TCTCAATGTTCATATAGTTA+GGG - chr7_2:87813662-87813681 None:intergenic 25.0%
! ATCTCAATGTTCATATAGTT+AGG - chr7_2:87813663-87813682 None:intergenic 25.0%
!!! ACTTATCTTTTTGAGTATCA+AGG - chr7_2:87813747-87813766 None:intergenic 25.0%
! TTCAACTTAAATGGTTAACA+AGG - chr7_2:87813959-87813978 None:intergenic 25.0%
!!! TTAAGTTGAAATTCATTTGC+AGG + chr7_2:87813969-87813988 Msa1087210:intron 25.0%
! CAAAAGAATAGCATTTCAAA+TGG - chr7_2:87814134-87814153 None:intergenic 25.0%
! TCTCCTTTATGAATAAAACA+TGG + chr7_2:87814281-87814300 Msa1087210:three_prime_UTR 25.0%
! TTGAAATTTGTGTGTTATCA+TGG + chr7_2:87814305-87814324 Msa1087210:three_prime_UTR 25.0%
!!! TGACAATATTAAGTTGATGT+GGG - chr7_2:87813088-87813107 None:intergenic 25.0%
! AACCAAAAAAGAATATACCA+AGG + chr7_2:87813198-87813217 Msa1087210:five_prime_UTR 25.0%
!!! AATGAATATGAGTTTGGTTT+TGG + chr7_2:87813277-87813296 Msa1087210:CDS 25.0%
!!! ATTATTAGTTTTACACTGAC+TGG - chr7_2:87813570-87813589 None:intergenic 25.0%
! AGTCAGTGTAAAACTAATAA+TGG + chr7_2:87813569-87813588 Msa1087210:CDS 25.0%
! TCTCAATGTTCATATAGTTA+GGG - chr7_2:87813662-87813681 None:intergenic 25.0%
! ATCTCAATGTTCATATAGTT+AGG - chr7_2:87813663-87813682 None:intergenic 25.0%
!!! ACTTATCTTTTTGAGTATCA+AGG - chr7_2:87813747-87813766 None:intergenic 25.0%
! TTCAACTTAAATGGTTAACA+AGG - chr7_2:87813959-87813978 None:intergenic 25.0%
!!! TTAAGTTGAAATTCATTTGC+AGG + chr7_2:87813969-87813988 Msa1087210:intron 25.0%
! CAAAAGAATAGCATTTCAAA+TGG - chr7_2:87814134-87814153 None:intergenic 25.0%
! TCTCCTTTATGAATAAAACA+TGG + chr7_2:87814281-87814300 Msa1087210:three_prime_UTR 25.0%
! TTGAAATTTGTGTGTTATCA+TGG + chr7_2:87814305-87814324 Msa1087210:three_prime_UTR 25.0%
!! CTGACAATATTAAGTTGATG+TGG - chr7_2:87813089-87813108 None:intergenic 30.0%
!!! GACCTTGGTATATTCTTTTT+TGG - chr7_2:87813203-87813222 None:intergenic 30.0%
CAGCAAAATGAATATGAGTT+TGG + chr7_2:87813271-87813290 Msa1087210:CDS 30.0%
TATAGTTAAGACAAGGTGAT+AGG - chr7_2:87813367-87813386 None:intergenic 30.0%
CTTGTCTTAACTATATCACA+GGG + chr7_2:87813372-87813391 Msa1087210:CDS 30.0%
AATGTTCATATAGTTAGGGT+TGG - chr7_2:87813658-87813677 None:intergenic 30.0%
!!! AATTCCGTTGGTTCTTATTT+TGG + chr7_2:87814058-87814077 Msa1087210:CDS 30.0%
! ATTCATTTTGTGACCTCTAT+TGG + chr7_2:87814223-87814242 Msa1087210:three_prime_UTR 30.0%
! TTCATTTTGTGACCTCTATT+GGG + chr7_2:87814224-87814243 Msa1087210:three_prime_UTR 30.0%
! ACGTGATTTTGTATTATGAG+AGG + chr7_2:87814249-87814268 Msa1087210:three_prime_UTR 30.0%
! CGTGATTTTGTATTATGAGA+GGG + chr7_2:87814250-87814269 Msa1087210:three_prime_UTR 30.0%
!! CTGACAATATTAAGTTGATG+TGG - chr7_2:87813089-87813108 None:intergenic 30.0%
!!! GACCTTGGTATATTCTTTTT+TGG - chr7_2:87813203-87813222 None:intergenic 30.0%
CAGCAAAATGAATATGAGTT+TGG + chr7_2:87813271-87813290 Msa1087210:CDS 30.0%
TATAGTTAAGACAAGGTGAT+AGG - chr7_2:87813367-87813386 None:intergenic 30.0%
CTTGTCTTAACTATATCACA+GGG + chr7_2:87813372-87813391 Msa1087210:CDS 30.0%
AATGTTCATATAGTTAGGGT+TGG - chr7_2:87813658-87813677 None:intergenic 30.0%
!!! AATTCCGTTGGTTCTTATTT+TGG + chr7_2:87814058-87814077 Msa1087210:CDS 30.0%
! ATTCATTTTGTGACCTCTAT+TGG + chr7_2:87814223-87814242 Msa1087210:three_prime_UTR 30.0%
! TTCATTTTGTGACCTCTATT+GGG + chr7_2:87814224-87814243 Msa1087210:three_prime_UTR 30.0%
! ACGTGATTTTGTATTATGAG+AGG + chr7_2:87814249-87814268 Msa1087210:three_prime_UTR 30.0%
! CGTGATTTTGTATTATGAGA+GGG + chr7_2:87814250-87814269 Msa1087210:three_prime_UTR 30.0%
!!! GTTTTGGAAGAACAATGTCT+AGG - chr7_2:87813138-87813157 None:intergenic 35.0%
TGTTTACTCTGTGAAGACAA+TGG - chr7_2:87813163-87813182 None:intergenic 35.0%
ATATACCAAGGTCTATACCA+AGG + chr7_2:87813210-87813229 Msa1087210:five_prime_UTR 35.0%
TGCAAATGTGTTGAAAACCT+TGG - chr7_2:87813230-87813249 None:intergenic 35.0%
! ATCGAGTTGTACAAATGTCT+TGG + chr7_2:87813337-87813356 Msa1087210:CDS 35.0%
CCTGTGATATAGTTAAGACA+AGG - chr7_2:87813374-87813393 None:intergenic 35.0%
CCTTGTCTTAACTATATCAC+AGG + chr7_2:87813371-87813390 Msa1087210:CDS 35.0%
AATCAGCATCAATCAAACTC+AGG + chr7_2:87813502-87813521 Msa1087210:CDS 35.0%
!!! TTAGTTTTACACTGACTGGT+GGG - chr7_2:87813566-87813585 None:intergenic 35.0%
!!! ATTAGTTTTACACTGACTGG+TGG - chr7_2:87813567-87813586 None:intergenic 35.0%
TCCATCAGGTACTAACATAT+TGG + chr7_2:87813882-87813901 Msa1087210:intron 35.0%
CCATCAGGTACTAACATATT+GGG + chr7_2:87813883-87813902 Msa1087210:intron 35.0%
CATCAGGTACTAACATATTG+GGG + chr7_2:87813884-87813903 Msa1087210:intron 35.0%
TGATCATCCAATTTGAACCT+TGG + chr7_2:87813933-87813952 Msa1087210:intron 35.0%
TTAAATGGTTAACAAGGCCA+AGG - chr7_2:87813953-87813972 None:intergenic 35.0%
TGAAATTCATTTGCAGGAAC+CGG + chr7_2:87813975-87813994 Msa1087210:intron 35.0%
TCAGTATGTTCAGAAAACTG+AGG - chr7_2:87814096-87814115 None:intergenic 35.0%
!! TGAACATACTGATTCTCAGT+TGG + chr7_2:87814104-87814123 Msa1087210:exon 35.0%
!! GAACATACTGATTCTCAGTT+GGG + chr7_2:87814105-87814124 Msa1087210:exon 35.0%
AAAATCACGTAACCCAATAG+AGG - chr7_2:87814239-87814258 None:intergenic 35.0%
TTTATGACAACCACTGAAAG+AGG + chr7_2:87814330-87814349 Msa1087210:three_prime_UTR 35.0%
!!! GTTTTGGAAGAACAATGTCT+AGG - chr7_2:87813138-87813157 None:intergenic 35.0%
TGTTTACTCTGTGAAGACAA+TGG - chr7_2:87813163-87813182 None:intergenic 35.0%
ATATACCAAGGTCTATACCA+AGG + chr7_2:87813210-87813229 Msa1087210:five_prime_UTR 35.0%
TGCAAATGTGTTGAAAACCT+TGG - chr7_2:87813230-87813249 None:intergenic 35.0%
! ATCGAGTTGTACAAATGTCT+TGG + chr7_2:87813337-87813356 Msa1087210:CDS 35.0%
CCTGTGATATAGTTAAGACA+AGG - chr7_2:87813374-87813393 None:intergenic 35.0%
CCTTGTCTTAACTATATCAC+AGG + chr7_2:87813371-87813390 Msa1087210:CDS 35.0%
AATCAGCATCAATCAAACTC+AGG + chr7_2:87813502-87813521 Msa1087210:CDS 35.0%
!!! TTAGTTTTACACTGACTGGT+GGG - chr7_2:87813566-87813585 None:intergenic 35.0%
!!! ATTAGTTTTACACTGACTGG+TGG - chr7_2:87813567-87813586 None:intergenic 35.0%
TCCATCAGGTACTAACATAT+TGG + chr7_2:87813882-87813901 Msa1087210:intron 35.0%
CCATCAGGTACTAACATATT+GGG + chr7_2:87813883-87813902 Msa1087210:intron 35.0%
CATCAGGTACTAACATATTG+GGG + chr7_2:87813884-87813903 Msa1087210:intron 35.0%
TGATCATCCAATTTGAACCT+TGG + chr7_2:87813933-87813952 Msa1087210:intron 35.0%
TTAAATGGTTAACAAGGCCA+AGG - chr7_2:87813953-87813972 None:intergenic 35.0%
TGAAATTCATTTGCAGGAAC+CGG + chr7_2:87813975-87813994 Msa1087210:intron 35.0%
TCAGTATGTTCAGAAAACTG+AGG - chr7_2:87814096-87814115 None:intergenic 35.0%
!! TGAACATACTGATTCTCAGT+TGG + chr7_2:87814104-87814123 Msa1087210:exon 35.0%
!! GAACATACTGATTCTCAGTT+GGG + chr7_2:87814105-87814124 Msa1087210:exon 35.0%
AAAATCACGTAACCCAATAG+AGG - chr7_2:87814239-87814258 None:intergenic 35.0%
! AGGCTTTTGTAGAGTAAGGA+CGG - chr7_2:87813118-87813137 None:intergenic 40.0%
! GTCTAGGCTTTTGTAGAGTA+AGG - chr7_2:87813122-87813141 None:intergenic 40.0%
! TGTGAAGACAATGGTGGTTT+TGG - chr7_2:87813154-87813173 None:intergenic 40.0%
TTACTCTGTGAAGACAATGG+TGG - chr7_2:87813160-87813179 None:intergenic 40.0%
GAAAACCTTGGTATAGACCT+TGG - chr7_2:87813218-87813237 None:intergenic 40.0%
CCCAATATGTTAGTACCTGA+TGG - chr7_2:87813886-87813905 None:intergenic 40.0%
AACAAGGCCAAGGTTCAAAT+TGG - chr7_2:87813943-87813962 None:intergenic 40.0%
CAGCTTGATTGAATTTCCAC+TGG - chr7_2:87814036-87814055 None:intergenic 40.0%
AATCAAGCTGTCAATTCCGT+TGG + chr7_2:87814046-87814065 Msa1087210:CDS 40.0%
GCTGCCAAAATAAGAACCAA+CGG - chr7_2:87814065-87814084 None:intergenic 40.0%
TGTTCAGAAAACTGAGGCAT+AGG - chr7_2:87814090-87814109 None:intergenic 40.0%
ATCAAAGTCCCTTGTGTTGA+AGG + chr7_2:87814191-87814210 Msa1087210:three_prime_UTR 40.0%
TCAAAGTCCCTTGTGTTGAA+GGG + chr7_2:87814192-87814211 Msa1087210:three_prime_UTR 40.0%
! AGGCTTTTGTAGAGTAAGGA+CGG - chr7_2:87813118-87813137 None:intergenic 40.0%
! GTCTAGGCTTTTGTAGAGTA+AGG - chr7_2:87813122-87813141 None:intergenic 40.0%
! TGTGAAGACAATGGTGGTTT+TGG - chr7_2:87813154-87813173 None:intergenic 40.0%
TTACTCTGTGAAGACAATGG+TGG - chr7_2:87813160-87813179 None:intergenic 40.0%
GAAAACCTTGGTATAGACCT+TGG - chr7_2:87813218-87813237 None:intergenic 40.0%
CCCAATATGTTAGTACCTGA+TGG - chr7_2:87813886-87813905 None:intergenic 40.0%
AACAAGGCCAAGGTTCAAAT+TGG - chr7_2:87813943-87813962 None:intergenic 40.0%
CAGCTTGATTGAATTTCCAC+TGG - chr7_2:87814036-87814055 None:intergenic 40.0%
AATCAAGCTGTCAATTCCGT+TGG + chr7_2:87814046-87814065 Msa1087210:CDS 40.0%
GCTGCCAAAATAAGAACCAA+CGG - chr7_2:87814065-87814084 None:intergenic 40.0%
TGTTCAGAAAACTGAGGCAT+AGG - chr7_2:87814090-87814109 None:intergenic 40.0%
ATCAAAGTCCCTTGTGTTGA+AGG + chr7_2:87814191-87814210 Msa1087210:three_prime_UTR 40.0%
TCAAAGTCCCTTGTGTTGAA+GGG + chr7_2:87814192-87814211 Msa1087210:three_prime_UTR 40.0%
TTTGAGCAGCATCCTGAAGA+CGG - chr7_2:87813410-87813429 None:intergenic 45.0%
TGGTTGTGAATTCACCACAC+TGG - chr7_2:87813438-87813457 None:intergenic 45.0%
ACAACCACTATGCCTATGTC+AGG + chr7_2:87813451-87813470 Msa1087210:CDS 45.0%
AGAACCTGACATAGGCATAG+TGG - chr7_2:87813458-87813477 None:intergenic 45.0%
CTATGCCTATGTCAGGTTCT+CGG + chr7_2:87813458-87813477 Msa1087210:CDS 45.0%
!! TTTTACACTGACTGGTGGGT+GGG - chr7_2:87813562-87813581 None:intergenic 45.0%
GATGCACATATTTGTCGAGC+TGG - chr7_2:87813636-87813655 None:intergenic 45.0%
TCTCCAAACTCAGTTCCATC+AGG + chr7_2:87813868-87813887 Msa1087210:CDS 45.0%
GTACCTGATGGAACTGAGTT+TGG - chr7_2:87813874-87813893 None:intergenic 45.0%
!! TGAGGGAGTGGATTTTGATC+CGG - chr7_2:87813997-87814016 None:intergenic 45.0%
TCAAAATCCACTCCCTCAAC+CGG + chr7_2:87813999-87814018 Msa1087210:CDS 45.0%
GACTGAACCCTTCAACACAA+GGG - chr7_2:87814202-87814221 None:intergenic 45.0%
AGACTGAACCCTTCAACACA+AGG - chr7_2:87814203-87814222 None:intergenic 45.0%
TTTGAGCAGCATCCTGAAGA+CGG - chr7_2:87813410-87813429 None:intergenic 45.0%
TGGTTGTGAATTCACCACAC+TGG - chr7_2:87813438-87813457 None:intergenic 45.0%
ACAACCACTATGCCTATGTC+AGG + chr7_2:87813451-87813470 Msa1087210:CDS 45.0%
AGAACCTGACATAGGCATAG+TGG - chr7_2:87813458-87813477 None:intergenic 45.0%
CTATGCCTATGTCAGGTTCT+CGG + chr7_2:87813458-87813477 Msa1087210:CDS 45.0%
!! TTTTACACTGACTGGTGGGT+GGG - chr7_2:87813562-87813581 None:intergenic 45.0%
GATGCACATATTTGTCGAGC+TGG - chr7_2:87813636-87813655 None:intergenic 45.0%
TCTCCAAACTCAGTTCCATC+AGG + chr7_2:87813868-87813887 Msa1087210:CDS 45.0%
GTACCTGATGGAACTGAGTT+TGG - chr7_2:87813874-87813893 None:intergenic 45.0%
!! TGAGGGAGTGGATTTTGATC+CGG - chr7_2:87813997-87814016 None:intergenic 45.0%
TCAAAATCCACTCCCTCAAC+CGG + chr7_2:87813999-87814018 Msa1087210:CDS 45.0%
GACTGAACCCTTCAACACAA+GGG - chr7_2:87814202-87814221 None:intergenic 45.0%
AGACTGAACCCTTCAACACA+AGG - chr7_2:87814203-87814222 None:intergenic 45.0%
GTAATCGCAATGTTGTGCGC+TGG + chr7_2:87813302-87813321 Msa1087210:CDS 50.0%
AATTCCTCAACCCCGTCTTC+AGG + chr7_2:87813395-87813414 Msa1087210:CDS 50.0%
TTGAGCAGCATCCTGAAGAC+GGG - chr7_2:87813409-87813428 None:intergenic 50.0%
GTGAATTCACCACACTGGCA+AGG - chr7_2:87813433-87813452 None:intergenic 50.0%
! TTTACACTGACTGGTGGGTG+GGG - chr7_2:87813561-87813580 None:intergenic 50.0%
!! GTTTTACACTGACTGGTGGG+TGG - chr7_2:87813563-87813582 None:intergenic 50.0%
! GATGATCCATCACCGGTTGA+GGG - chr7_2:87814014-87814033 None:intergenic 50.0%
TCCACTGGATGATCCATCAC+CGG - chr7_2:87814021-87814040 None:intergenic 50.0%
GTAATCGCAATGTTGTGCGC+TGG + chr7_2:87813302-87813321 Msa1087210:CDS 50.0%
AATTCCTCAACCCCGTCTTC+AGG + chr7_2:87813395-87813414 Msa1087210:CDS 50.0%
TTGAGCAGCATCCTGAAGAC+GGG - chr7_2:87813409-87813428 None:intergenic 50.0%
GTGAATTCACCACACTGGCA+AGG - chr7_2:87813433-87813452 None:intergenic 50.0%
! TTTACACTGACTGGTGGGTG+GGG - chr7_2:87813561-87813580 None:intergenic 50.0%
!! GTTTTACACTGACTGGTGGG+TGG - chr7_2:87813563-87813582 None:intergenic 50.0%
! GATGATCCATCACCGGTTGA+GGG - chr7_2:87814014-87814033 None:intergenic 50.0%
TCCACTGGATGATCCATCAC+CGG - chr7_2:87814021-87814040 None:intergenic 50.0%
TGAGCAGCATCCTGAAGACG+GGG - chr7_2:87813408-87813427 None:intergenic 55.0%
CTGCTCAAACCTTGCCAGTG+TGG + chr7_2:87813421-87813440 Msa1087210:CDS 55.0%
TGCCTATGTCAGGTTCTCGG+CGG + chr7_2:87813461-87813480 Msa1087210:CDS 55.0%
GTTTGCACCTTGCAAGCACC+AGG - chr7_2:87813539-87813558 None:intergenic 55.0%
TTCCTGCTGGTGAGTCTGCT+GGG - chr7_2:87813837-87813856 None:intergenic 55.0%
GACTCTGCTTCTGTTCCTGC+TGG - chr7_2:87813850-87813869 None:intergenic 55.0%
! GGATGATCCATCACCGGTTG+AGG - chr7_2:87814015-87814034 None:intergenic 55.0%
!! ACCGGTGATGGATCATCCAG+TGG + chr7_2:87814017-87814036 Msa1087210:CDS 55.0%
TGAGCAGCATCCTGAAGACG+GGG - chr7_2:87813408-87813427 None:intergenic 55.0%
CTGCTCAAACCTTGCCAGTG+TGG + chr7_2:87813421-87813440 Msa1087210:CDS 55.0%
TGCCTATGTCAGGTTCTCGG+CGG + chr7_2:87813461-87813480 Msa1087210:CDS 55.0%
GTTTGCACCTTGCAAGCACC+AGG - chr7_2:87813539-87813558 None:intergenic 55.0%
TTCCTGCTGGTGAGTCTGCT+GGG - chr7_2:87813837-87813856 None:intergenic 55.0%
GACTCTGCTTCTGTTCCTGC+TGG - chr7_2:87813850-87813869 None:intergenic 55.0%
! GGATGATCCATCACCGGTTG+AGG - chr7_2:87814015-87814034 None:intergenic 55.0%
!! ACCGGTGATGGATCATCCAG+TGG + chr7_2:87814017-87814036 Msa1087210:CDS 55.0%
GCATCCTGAAGACGGGGTTG+AGG - chr7_2:87813402-87813421 None:intergenic 60.0%
GCCTATGTCAGGTTCTCGGC+GGG + chr7_2:87813462-87813481 Msa1087210:CDS 60.0%
CCTATGTCAGGTTCTCGGCG+GGG + chr7_2:87813463-87813482 Msa1087210:CDS 60.0%
CTATGTCAGGTTCTCGGCGG+GGG + chr7_2:87813464-87813483 Msa1087210:CDS 60.0%
!! ACTCAGGCTCTAGCCTTGCC+TGG + chr7_2:87813518-87813537 Msa1087210:CDS 60.0%
AGCCTTGCCTGGTGCTTGCA+AGG + chr7_2:87813529-87813548 Msa1087210:CDS 60.0%
CACCTTGCAAGCACCAGGCA+AGG - chr7_2:87813534-87813553 None:intergenic 60.0%
TCCTGCTGGTGAGTCTGCTG+GGG - chr7_2:87813836-87813855 None:intergenic 60.0%
GTTCCTGCTGGTGAGTCTGC+TGG - chr7_2:87813838-87813857 None:intergenic 60.0%
TCCACTCCCTCAACCGGTGA+TGG + chr7_2:87814005-87814024 Msa1087210:CDS 60.0%
! TCCATCACCGGTTGAGGGAG+TGG - chr7_2:87814009-87814028 None:intergenic 60.0%
GCATCCTGAAGACGGGGTTG+AGG - chr7_2:87813402-87813421 None:intergenic 60.0%
GCCTATGTCAGGTTCTCGGC+GGG + chr7_2:87813462-87813481 Msa1087210:CDS 60.0%
CCTATGTCAGGTTCTCGGCG+GGG + chr7_2:87813463-87813482 Msa1087210:CDS 60.0%
CTATGTCAGGTTCTCGGCGG+GGG + chr7_2:87813464-87813483 Msa1087210:CDS 60.0%
!! ACTCAGGCTCTAGCCTTGCC+TGG + chr7_2:87813518-87813537 Msa1087210:CDS 60.0%
AGCCTTGCCTGGTGCTTGCA+AGG + chr7_2:87813529-87813548 Msa1087210:CDS 60.0%
CACCTTGCAAGCACCAGGCA+AGG - chr7_2:87813534-87813553 None:intergenic 60.0%
TCCTGCTGGTGAGTCTGCTG+GGG - chr7_2:87813836-87813855 None:intergenic 60.0%
GTTCCTGCTGGTGAGTCTGC+TGG - chr7_2:87813838-87813857 None:intergenic 60.0%
TCCACTCCCTCAACCGGTGA+TGG + chr7_2:87814005-87814024 Msa1087210:CDS 60.0%
! TCCATCACCGGTTGAGGGAG+TGG - chr7_2:87814009-87814028 None:intergenic 60.0%
CCCCGCCGAGAACCTGACAT+AGG - chr7_2:87813466-87813485 None:intergenic 65.0%
TCCCCAGCAGACTCACCAGC+AGG + chr7_2:87813832-87813851 Msa1087210:CDS 65.0%
CCCCGCCGAGAACCTGACAT+AGG - chr7_2:87813466-87813485 None:intergenic 65.0%
TCCCCAGCAGACTCACCAGC+AGG + chr7_2:87813832-87813851 Msa1087210:CDS 65.0%
! GGCGGGGGTGCATCGTCGCT+GGG + chr7_2:87813479-87813498 Msa1087210:CDS 75.0%
! GGCGGGGGTGCATCGTCGCT+GGG + chr7_2:87813479-87813498 Msa1087210:CDS 75.0%
!! CGGCGGGGGTGCATCGTCGC+TGG + chr7_2:87813478-87813497 Msa1087210:CDS 80.0%
!! CGGCGGGGGTGCATCGTCGC+TGG + chr7_2:87813478-87813497 Msa1087210:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 87813068 87814351 87813068 ID=Msa1087210;Name=Msa1087210
chr7_2 mRNA 87813068 87814351 87813068 ID=Msa1087210-mRNA-1;Parent=Msa1087210;Name=Msa1087210-mRNA-1;_AED=0.02;_eAED=0.02;_QI=195|1|1|1|1|1|3|245|168
chr7_2 exon 87813068 87813590 87813068 ID=Msa1087210-mRNA-1:exon:24012;Parent=Msa1087210-mRNA-1
chr7_2 exon 87813827 87813889 87813827 ID=Msa1087210-mRNA-1:exon:24013;Parent=Msa1087210-mRNA-1
chr7_2 exon 87813991 87814351 87813991 ID=Msa1087210-mRNA-1:exon:24014;Parent=Msa1087210-mRNA-1
chr7_2 five_prime_UTR 87813068 87813262 87813068 ID=Msa1087210-mRNA-1:five_prime_utr;Parent=Msa1087210-mRNA-1
chr7_2 CDS 87813263 87813590 87813263 ID=Msa1087210-mRNA-1:cds;Parent=Msa1087210-mRNA-1
chr7_2 CDS 87813827 87813889 87813827 ID=Msa1087210-mRNA-1:cds;Parent=Msa1087210-mRNA-1
chr7_2 CDS 87813991 87814106 87813991 ID=Msa1087210-mRNA-1:cds;Parent=Msa1087210-mRNA-1
chr7_2 three_prime_UTR 87814107 87814351 87814107 ID=Msa1087210-mRNA-1:three_prime_utr;Parent=Msa1087210-mRNA-1
Gene Sequence

>Msa1087210

ATGGCACACAGCAAAATGAATATGAGTTTGGTTTTGGTTGTAATCGCAATGTTGTGCGCTGGAGCTGCTGCGCAATCGAGTTGTACAAATGTCTTGGTCAGCCTATCACCTTGTCTTAACTATATCACAGGGAATTCCTCAACCCCGTCTTCAGGATGCTGCTCAAACCTTGCCAGTGTGGTGAATTCACAACCACTATGCCTATGTCAGGTTCTCGGCGGGGGTGCATCGTCGCTGGGAATCAGCATCAATCAAACTCAGGCTCTAGCCTTGCCTGGTGCTTGCAAGGTGCAAACCCCACCCACCAGTCAGTGTAAAACTAATAATGCTGCTTCCCCAGCAGACTCACCAGCAGGAACAGAAGCAGAGTCTCCAAACTCAGTTCCATCAGGAACCGGATCAAAATCCACTCCCTCAACCGGTGATGGATCATCCAGTGGAAATTCAATCAAGCTGTCAATTCCGTTGGTTCTTATTTTGGCAGCAGCCTATGCCTCAGTTTTCTGA

Protein sequence

>Msa1087210

MAHSKMNMSLVLVVIAMLCAGAAAQSSCTNVLVSLSPCLNYITGNSSTPSSGCCSNLASVVNSQPLCLCQVLGGGASSLGISINQTQALALPGACKVQTPPTSQCKTNNAASPADSPAGTEAESPNSVPSGTGSKSTPSTGDGSSSGNSIKLSIPLVLILAAAYASVF*