AlfalfaGEDB | Msa0411620

M. sativa cultivar zhongmu-4 / Msa0411620

KEGG: K10406
GO: GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005856 GO:0005871 GO:0005875 GO:0006091 GO:0006928 GO:0007017 GO:0007018 GO:0007275 GO:0008150 GO:0008152 GO:0009060 GO:0009791 GO:0009845 GO:0009987 GO:0015630 GO:0015980 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0048856 GO:0055114 GO:0090351
PFAM: PF00307.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0411620	RHN67456.1	95.848	1132	39	1	1	1132	1	1124	0.0	2241

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0411620	sp\|Q8W1Y3\|KN14F_ARATH	61.250	1120	341	18	68	1129	1	1085	0.0	1291

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0411620	A0A396IP02	95.848	1132	39	1	1	1132	1	1124	0.0	2241

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0025160	Msa0411620	0.814607	1.413774e-51	-8.615850e-47
Msa0034210	Msa0411620	0.821295	4.356435e-53	-8.615850e-47
Msa0128310	Msa0411620	0.810924	9.050696e-51	-8.615850e-47
Msa0161930	Msa0411620	0.808598	2.862562e-50	-8.615850e-47
Msa0174440	Msa0411620	0.815455	9.163184e-52	-8.615850e-47
Msa0230800	Msa0411620	0.804547	2.049978e-49	-8.615850e-47
Msa0411620	Msa0435210	0.823649	1.236575e-53	-8.615850e-47
Msa0411620	Msa0455970	0.858386	8.539032e-63	-8.615850e-47
Msa0411620	Msa0486460	0.838366	3.000678e-57	-8.615850e-47
Msa0411620	Msa0517250	0.803156	3.987373e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0411620	MtrunA17_Chr3g0102921	95.848	1132	39	1	1	1132	1	1124	0.0	2241
Msa0411620	MtrunA17_Chr5g0447041	71.198	1177	284	9	1	1131	1	1168	0.0	1679
Msa0411620	MtrunA17_Chr1g0195111	49.173	846	372	16	41	876	23	820	0.0	758
Msa0411620	MtrunA17_Chr7g0257301	44.857	807	365	17	41	810	12	775	0.0	624
Msa0411620	MtrunA17_Chr1g0192481	62.284	464	161	6	386	848	6	456	0.0	576
Msa0411620	MtrunA17_Chr7g0271961	58.861	474	174	4	364	835	327	781	0.0	570
Msa0411620	MtrunA17_Chr7g0271961	55.263	152	64	3	42	190	27	177	1.79e-40	162
Msa0411620	MtrunA17_Chr7g0269691	44.326	564	270	12	41	595	27	555	8.59e-142	439
Msa0411620	MtrunA17_Chr5g0411971	40.351	456	245	7	364	813	322	756	2.23e-95	328
Msa0411620	MtrunA17_Chr5g0421591	41.002	439	232	7	364	796	297	714	2.47e-95	324

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0411620	AT3G44730.2	60.650	1169	357	19	19	1129	7	1130	1329
Msa0411620	AT3G44730.3	60.650	1169	357	19	19	1129	7	1130	1329
Msa0411620	AT3G44730.1	61.250	1120	341	18	68	1129	1	1085	1291
Msa0411620	AT3G44730.4	61.250	1120	341	18	68	1129	1	1085	1291
Msa0411620	AT2G47500.1	50.884	792	328	13	43	828	32	768	744
Msa0411620	AT2G47500.2	50.884	792	328	13	43	828	32	768	743
Msa0411620	AT5G27000.1	46.991	864	375	17	43	887	32	831	706
Msa0411620	AT1G09170.5	47.713	809	367	17	25	815	27	797	704
Msa0411620	AT1G09170.1	45.488	809	349	17	25	815	27	761	652
Msa0411620	AT3G10310.2	44.789	806	364	19	41	834	5	741	605

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Find 252 sgRNAs with CRISPR-Local

Find 520 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTCTACCAGCTTCC+AGG	0.391086	3_2:-53933946	Msa0411620:intron
AAAATATTAAAAGGGGATAT+TGG	0.308387	3_2:-53929423	Msa0411620:CDS
AAAATGCATCTGGCACGTTG+AGG	0.660908	3_2:+53927822	None:intergenic
AAACTTTCTTTATGCTGTTA+AGG	0.313712	3_2:-53930631	Msa0411620:CDS
AAAGAAGCAGCCGTTCTCAT+AGG	0.433055	3_2:-53927712	Msa0411620:intron
AAATATTATCTCTCTTAGCA+TGG	0.565939	3_2:-53925431	Msa0411620:three_prime_UTR
AAATTAGTGCGCTCAGGGAA+AGG	0.528112	3_2:-53926478	Msa0411620:CDS
AACCCCGAACTTAATGCTAT+CGG	0.509137	3_2:-53927096	Msa0411620:CDS
AACTGGAGCAGTGGAAAGCT+GGG	0.489118	3_2:-53926851	Msa0411620:CDS
AAGAAACGGAACTGGAGCAG+TGG	0.609710	3_2:-53926860	Msa0411620:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTACAAGTTCATCCAAAATT+AGG	-	chr3_2:53926039-53926058	Msa0411620:CDS	30.0%
TTTGCATGTTAAACAAACAG+TGG	-	chr3_2:53926508-53926527	Msa0411620:CDS	30.0%
TCTTGAGATTAGTGAAATGA+GGG	+	chr3_2:53926969-53926988	None:intergenic	30.0%
TCTCAAATTATTATCGGTGT+CGG	-	chr3_2:53928081-53928100	Msa0411620:CDS	30.0%
TGCAAATCATCACAAAAATG+GGG	+	chr3_2:53928240-53928259	None:intergenic	30.0%
GGATGAAGCATATAGTAATT+AGG	+	chr3_2:53928482-53928501	None:intergenic	30.0%
AGGATCATCAAATAAAGTTG+TGG	-	chr3_2:53928951-53928970	Msa0411620:intron	30.0%
GTTTGAAAGGATACTATGAA+TGG	-	chr3_2:53928986-53929005	Msa0411620:intron	30.0%
TACTATGAATGGAAACTATC+TGG	-	chr3_2:53928997-53929016	Msa0411620:intron	30.0%
CATTCAAAAACTCTTCAGAT+AGG	+	chr3_2:53929176-53929195	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	53925367	53934089	53925367	ID=Msa0411620;Name=Msa0411620
chr3_2	mRNA	53925367	53934089	53925367	ID=Msa0411620-mRNA-1;Parent=Msa0411620;Name=Msa0411620-mRNA-1;_AED=0.09;_eAED=0.09;_QI=154\|0.93\|0.82\|1\|0.93\|0.88\|17\|332\|1132
chr3_2	exon	53925367	53925858	53925367	ID=Msa0411620-mRNA-1:exon:10900;Parent=Msa0411620-mRNA-1
chr3_2	exon	53925947	53926599	53925947	ID=Msa0411620-mRNA-1:exon:10899;Parent=Msa0411620-mRNA-1
chr3_2	exon	53926722	53926913	53926722	ID=Msa0411620-mRNA-1:exon:10898;Parent=Msa0411620-mRNA-1
chr3_2	exon	53926990	53927153	53926990	ID=Msa0411620-mRNA-1:exon:10897;Parent=Msa0411620-mRNA-1
chr3_2	exon	53927347	53927600	53927347	ID=Msa0411620-mRNA-1:exon:10896;Parent=Msa0411620-mRNA-1
chr3_2	exon	53927713	53927895	53927713	ID=Msa0411620-mRNA-1:exon:10895;Parent=Msa0411620-mRNA-1
chr3_2	exon	53927967	53928163	53927967	ID=Msa0411620-mRNA-1:exon:10894;Parent=Msa0411620-mRNA-1
chr3_2	exon	53928278	53928384	53928278	ID=Msa0411620-mRNA-1:exon:10893;Parent=Msa0411620-mRNA-1
chr3_2	exon	53928613	53928792	53928613	ID=Msa0411620-mRNA-1:exon:10892;Parent=Msa0411620-mRNA-1
chr3_2	exon	53928868	53928963	53928868	ID=Msa0411620-mRNA-1:exon:10891;Parent=Msa0411620-mRNA-1
chr3_2	exon	53929049	53929130	53929049	ID=Msa0411620-mRNA-1:exon:10890;Parent=Msa0411620-mRNA-1
chr3_2	exon	53929239	53929463	53929239	ID=Msa0411620-mRNA-1:exon:10889;Parent=Msa0411620-mRNA-1
chr3_2	exon	53929594	53929662	53929594	ID=Msa0411620-mRNA-1:exon:10888;Parent=Msa0411620-mRNA-1
chr3_2	exon	53930145	53930507	53930145	ID=Msa0411620-mRNA-1:exon:10887;Parent=Msa0411620-mRNA-1
chr3_2	exon	53930590	53930900	53930590	ID=Msa0411620-mRNA-1:exon:10886;Parent=Msa0411620-mRNA-1
chr3_2	exon	53933573	53933746	53933573	ID=Msa0411620-mRNA-1:exon:10885;Parent=Msa0411620-mRNA-1
chr3_2	exon	53933947	53934089	53933947	ID=Msa0411620-mRNA-1:exon:10884;Parent=Msa0411620-mRNA-1
chr3_2	five_prime_UTR	53933947	53934089	53933947	ID=Msa0411620-mRNA-1:five_prime_utr;Parent=Msa0411620-mRNA-1
chr3_2	five_prime_UTR	53933736	53933746	53933736	ID=Msa0411620-mRNA-1:five_prime_utr;Parent=Msa0411620-mRNA-1
chr3_2	CDS	53933573	53933735	53933573	ID=Msa0411620-mRNA-1:cds;Parent=Msa0411620-mRNA-1
chr3_2	CDS	53930590	53930900	53930590	ID=Msa0411620-mRNA-1:cds;Parent=Msa0411620-mRNA-1
chr3_2	CDS	53930145	53930507	53930145	ID=Msa0411620-mRNA-1:cds;Parent=Msa0411620-mRNA-1
chr3_2	CDS	53929594	53929662	53929594	ID=Msa0411620-mRNA-1:cds;Parent=Msa0411620-mRNA-1
chr3_2	CDS	53929239	53929463	53929239	ID=Msa0411620-mRNA-1:cds;Parent=Msa0411620-mRNA-1
chr3_2	CDS	53929049	53929130	53929049	ID=Msa0411620-mRNA-1:cds;Parent=Msa0411620-mRNA-1
chr3_2	CDS	53928868	53928963	53928868	ID=Msa0411620-mRNA-1:cds;Parent=Msa0411620-mRNA-1
chr3_2	CDS	53928613	53928792	53928613	ID=Msa0411620-mRNA-1:cds;Parent=Msa0411620-mRNA-1
chr3_2	CDS	53928278	53928384	53928278	ID=Msa0411620-mRNA-1:cds;Parent=Msa0411620-mRNA-1
chr3_2	CDS	53927967	53928163	53927967	ID=Msa0411620-mRNA-1:cds;Parent=Msa0411620-mRNA-1
chr3_2	CDS	53927713	53927895	53927713	ID=Msa0411620-mRNA-1:cds;Parent=Msa0411620-mRNA-1
chr3_2	CDS	53927347	53927600	53927347	ID=Msa0411620-mRNA-1:cds;Parent=Msa0411620-mRNA-1
chr3_2	CDS	53926990	53927153	53926990	ID=Msa0411620-mRNA-1:cds;Parent=Msa0411620-mRNA-1
chr3_2	CDS	53926722	53926913	53926722	ID=Msa0411620-mRNA-1:cds;Parent=Msa0411620-mRNA-1
chr3_2	CDS	53925947	53926599	53925947	ID=Msa0411620-mRNA-1:cds;Parent=Msa0411620-mRNA-1
chr3_2	CDS	53925699	53925858	53925699	ID=Msa0411620-mRNA-1:cds;Parent=Msa0411620-mRNA-1
chr3_2	three_prime_UTR	53925367	53925698	53925367	ID=Msa0411620-mRNA-1:three_prime_utr;Parent=Msa0411620-mRNA-1

Gene Sequence

>Msa0411620

ATGCCACAGGAGGGGTCACTATCACAAAACTCTTTTTTGATATCTCCTTCAAAGAGAGGATTGAAAGGTATAGTTTCTATGAACATCAAGGAAGCTTCATGTCCTGCCATAGAGGAGAGTTTCAACGATCATGATTTGGCTCATAGGAAAGCAGAAGAAGCAGATTCAAGAAGATACGAAGCATCAGAATGGCTACGTCAAATGGACAACGTTGCATGTTCATTGTTACCACAAAAACCCTCAGAACAACAATTTTGTCTCTCACTCCGCAACGGTCTCATTCTCTGCAATGTCCTCAACAAAGTGAATCCTGGTGCTGTTGTCAAAGTTGTGGATAATCCAGCACTTGCTGCTGCTGCTTCAATAGAAGGAGCAGCACATTCTGCTATTCAGTATTTTGAGAATATGAGAAACTTTCTTTATGCTGTTAAGGATATGCAACTCTTGACTTTTGAAGCTTCTGATTTAGAGAAGGGAGGATCATCAAATAAAGTTGTGGACTGCATTCTATGTTTGAAAGGATACTATGAATGGAAACTATCTGGTGGAATTGGTGTGTGGAGGTATGGTGGAACTGTGAGGATTACTTCCTTACCAAAGATGTCTCCGTCTTCCTCCATAGTTGGCAGTGAAAGTGCTGATGATTCACTGGACGAGTCCGAGTCATCGCAGTATGAGCATCTGCTAGAATTTCTTCACCTATCTGAAGAGTTTTTGAATGAAGAAACCAAGACTACCAATGTTCTTGCTTTCCTTTTTGATCACTTTGGACTCAGGCTGCTTCAGGCTTACCTTAGAGAGACAGATGGGATTGATGATCTGCCTCTGAATACAATGGTAATTGATGCCTTACTCGGCAAGGTAGTCAAGGATTTCTCTTCTTTGCTTGTTTCTCAAGGTGCTGAGCTTGGACTTTTCCTGAAGAAAATATTAAAAGGGGATATTGGTTGTCTCTCAAGGAGGGAGTTTGTAGAAGCTATCTCACTGTATCTTAATCAAAGAAGTAGTTTGGCATCAAATGATTTCTCCAAATTCTGCAGTTGTGGTGGCAAGCGTGATAATGTTCGACAAAATGTCAATTATTCTGCCAAATATGCTGAAGTAATCAATACTCAACAGAAACAACTTGAGACGGTGAAATACTATTTTGAAGATACAAAACTGGAAGTCAAACAAATTCACTCAGAGTGGGAACAAGAATTGATTAGGCTAGAGCATCATGTCAAGAGCCTTGAAGTAGCATCCTCTTCTTACCACAAAGTTTTGGAAGAGAACCGTTCTCTTTACAATCAAGTACAAGACCTTAAAGGAGCCATTAGGGTCTATTGTAGAGTCAGACCCTTCTTACCAGGACAATCAAATGGACAGTCTACAGTAGACTATATCGGAGAAAATGGAGACATGATGATTGTAAATCCAATCAAGCAAGGAAAAGATGCAAGAAGGGTATTTTCATTCAATAAGGTGTTTGGTACAAGTGTAACACAAGAACAAATTTATGCCGACACTCAACCATTGATCAGGTCTGTTTTAGATGGTTATAATGTTTGTGTCTTTGCATATGGGCAGACCGGTTCAGGGAAGACCTACACAATGAGTGGCCCTGATCTGTCAGCTGAAGATACATGGGGTGTAAACTATAGAGCTTTGCGTGATTTATTTTATATATCGAAGGAAAGATCAGATTCCATAAAATATGAAGTTTTCGTCCAGATGATTGAGATATACAATGAACAAGTGAGAGATTTATTAGTCAGTGATGGCTCTAACAGAAGATATCCTTTAAGCAAGCTTTCCTTAACAAGATATACATTAGATGTACGAAACACTTCCCAACTAAATGGCCTCAACGTGCCAGATGCATTTTTAGTTCCGGTTACTTGTACCCGAGATGTTTTATATTTAATGAGAATTGGTCAGAAAAATCGCGCTGTAGGTGCTACAGCTCTTAATGAAAGAAGCAGCCGTTCTCATAGTGTTTTAACTGTTCATGTTCGAGGCAGAGAGGTGGTTTCTAACTCCATTCTTAGGGGTTGTCTCCATCTTGTGGATTTGGCTGGTAGTGAGAGAGTTGACAAATCTGAGGCTGTTGGTGAGAGACTAAAGGAGGCTCAACATATAAATCGATCACTTTCAGCACTTGGAGATGTTATTTCTGCTTTGGCACAGAAAAGTCCACATATCCCTTATAGAAATAGCAAGCTCACACAAGTGTTACAAGATTCTTTAGGAGGGCATGCAAAAACTTTGATGTTTGTTCATATAAACCCCGAACTTAATGCTATCGGGGAGACAATTAGTACACTCAAGTTTGCTGAGAGGGTTGCATCCATTGAACTTGGGGCTGCTCAATCTAATAAAGAAACTGGAGAAATTCGAGAACTGAAGGAAGAGATATCAAGTCTCAAACTGGCGTTGGAGAGAAAAGAAACGGAACTGGAGCAGTGGAAAGCTGGGAATGCTCGAAACATTACAGAGTCTCCAAAACGAAGAGCTGTTTCACCTTACTATTCGCCCAGATATGGCACCAGTGGCAGCATGAAGCCTGAAGCTAGTCAACGAGTCATGGATGATAGAAACCTTGAGGCTAGAAGTTGCTCGTCGGGTAAGCAAAGGAGGTCAAGGTTTCCCTCGGCATTTATGGACAAGGAGTCCATGCCGAAAATGTCCCTTCTCACCGAAGAAAAATTAGTGCGCTCAGGGAAAGGAAGATCACCGTCACCTCCAGTGAGAAGATCAACATCTACTGATAGAGGGTCAGTCATTAAAAACAACCTCAAAAATGAAACAACTGACAACCAACCAATATTAAAGCATCCATTTCCAGCTAGAGTACCTGTCAACAAATTCCTTAGCACAATGCCAATGGCTGCAACCCTTGAAAATAATGCAAGGTTGCATGTGAATTCACCTGAGCCAGTAAAACATGAAGAGGAACAATTCAAGCAAGCACTTAGTGTGGTAAGACAAGGCGGTGTTAGAAAAAGCAAGGTTGAAAGTAAGGCTAAGGCCAAACATCATCAACTATCTCCCTTTAAGATTCAAAAGTCTGATTTTATCCCAACATTTATTTCTGGCACGGAGTTTGTAGGTGAAAAGACTGTGGAGACACCTCCAAAGAGTGATCACTCTGATCCCGAAAATGATCTTAGATTTGTTGACTCTCCTGTCCATGGTGCCTTAAATCTTAATAAGATACGTCAGAACGTTCCAAGGAATTTTCAGAACCTTGAATCAAGAAGAACAATGCAAGGAGGAGAGCCTCTATCTGCTAGCAAAGTTGATAACAAACCTTTAAATGGTTCAGCAAGCAATCATAAAGAAGGAAATAATACATCCATACCTGAATTTAGACGGAGCCGATCTACTCCACGCGGAAAGTTTTTAGGTTTATCTTGA

Protein sequence

>Msa0411620

MPQEGSLSQNSFLISPSKRGLKGIVSMNIKEASCPAIEESFNDHDLAHRKAEEADSRRYEASEWLRQMDNVACSLLPQKPSEQQFCLSLRNGLILCNVLNKVNPGAVVKVVDNPALAAAASIEGAAHSAIQYFENMRNFLYAVKDMQLLTFEASDLEKGGSSNKVVDCILCLKGYYEWKLSGGIGVWRYGGTVRITSLPKMSPSSSIVGSESADDSLDESESSQYEHLLEFLHLSEEFLNEETKTTNVLAFLFDHFGLRLLQAYLRETDGIDDLPLNTMVIDALLGKVVKDFSSLLVSQGAELGLFLKKILKGDIGCLSRREFVEAISLYLNQRSSLASNDFSKFCSCGGKRDNVRQNVNYSAKYAEVINTQQKQLETVKYYFEDTKLEVKQIHSEWEQELIRLEHHVKSLEVASSSYHKVLEENRSLYNQVQDLKGAIRVYCRVRPFLPGQSNGQSTVDYIGENGDMMIVNPIKQGKDARRVFSFNKVFGTSVTQEQIYADTQPLIRSVLDGYNVCVFAYGQTGSGKTYTMSGPDLSAEDTWGVNYRALRDLFYISKERSDSIKYEVFVQMIEIYNEQVRDLLVSDGSNRRYPLSKLSLTRYTLDVRNTSQLNGLNVPDAFLVPVTCTRDVLYLMRIGQKNRAVGATALNERSSRSHSVLTVHVRGREVVSNSILRGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSPHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPELNAIGETISTLKFAERVASIELGAAQSNKETGEIRELKEEISSLKLALERKETELEQWKAGNARNITESPKRRAVSPYYSPRYGTSGSMKPEASQRVMDDRNLEARSCSSGKQRRSRFPSAFMDKESMPKMSLLTEEKLVRSGKGRSPSPPVRRSTSTDRGSVIKNNLKNETTDNQPILKHPFPARVPVNKFLSTMPMAATLENNARLHVNSPEPVKHEEEQFKQALSVVRQGGVRKSKVESKAKAKHHQLSPFKIQKSDFIPTFISGTEFVGEKTVETPPKSDHSDPENDLRFVDSPVHGALNLNKIRQNVPRNFQNLESRRTMQGGEPLSASKVDNKPLNGSASNHKEGNNTSIPEFRRSRSTPRGKFLGLS*