AlfalfaGEDB | Msa0562350

M. sativa cultivar zhongmu-4 / Msa0562350

KEGG: K13415
GO: GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562350	XP_039685100.1	98.946	1138	12	0	1	1138	86	1223	0.0	2287

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562350	sp\|Q9ZPS9\|BRL2_ARATH	70.141	1132	327	6	15	1138	12	1140	0.0	1561

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562350	A0A396GQ64	98.946	1138	12	0	1	1138	1	1138	0.0	2287

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008040	Msa0562350	0.805108	1.564968e-49	-8.615850e-47
Msa0015150	Msa0562350	0.821974	3.035846e-53	-8.615850e-47
Msa0025160	Msa0562350	0.837872	4.022022e-57	-8.615850e-47
Msa0034210	Msa0562350	0.807776	4.285192e-50	-8.615850e-47
Msa0038530	Msa0562350	0.805638	1.211702e-49	-8.615850e-47
Msa0050660	Msa0562350	0.855916	4.575890e-62	-8.615850e-47
Msa0050700	Msa0562350	0.859316	4.498997e-63	-8.615850e-47
Msa0050790	Msa0562350	0.846635	1.918847e-59	-8.615850e-47
Msa0057540	Msa0562350	0.825249	5.195936e-54	-8.615850e-47
Msa0072520	Msa0562350	0.836017	1.197360e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562350	MtrunA17_Chr8g0375511	98.946	1138	12	0	1	1138	1	1138	0.0	2287
Msa0562350	MtrunA17_Chr3g0079661	46.764	1159	505	22	53	1126	60	1191	0.0	942
Msa0562350	MtrunA17_Chr1g0203631	37.774	1051	588	21	101	1124	255	1266	0.0	586
Msa0562350	MtrunA17_Chr1g0203631	32.240	732	405	13	45	702	31	745	1.52e-73	267
Msa0562350	MtrunA17_Chr1g0203631	30.621	467	271	6	288	703	102	566	2.14e-45	179
Msa0562350	MtrunA17_Chr1g0203631	29.492	295	159	6	434	726	102	349	1.63e-25	114
Msa0562350	MtrunA17_Chr1g0189871	33.709	1154	633	30	15	1123	10	1076	2.96e-160	505
Msa0562350	MtrunA17_Chr3g0091461	32.294	1155	642	32	20	1127	11	1072	3.86e-156	493
Msa0562350	MtrunA17_Chr4g0052921	34.708	1043	560	27	145	1123	263	1248	4.95e-156	498
Msa0562350	MtrunA17_Chr4g0052921	32.634	763	381	17	41	741	33	724	4.67e-77	278

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562350	AT2G01950.1	70.141	1132	327	6	15	1138	12	1140	0.0	1561
Msa0562350	AT1G55610.1	47.059	1156	542	23	17	1126	6	1137	0.0	986
Msa0562350	AT1G55610.2	47.059	1156	542	23	17	1126	6	1137	0.0	986
Msa0562350	AT3G13380.1	48.811	1135	517	22	42	1135	33	1144	0.0	974
Msa0562350	AT4G39400.1	45.283	1166	545	19	38	1137	31	1169	0.0	892
Msa0562350	AT5G07280.1	36.485	1195	627	24	39	1126	23	1192	0.0	607
Msa0562350	AT1G17230.2	34.286	1120	636	27	38	1125	23	1074	7.72e-167	523
Msa0562350	AT1G17230.1	34.286	1120	636	27	38	1125	23	1074	1.34e-166	522
Msa0562350	AT4G20140.1	31.746	1260	658	33	39	1133	23	1245	2.09e-157	502
Msa0562350	AT5G48940.1	33.046	1162	620	31	11	1126	17	1066	1.26e-153	489

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Find 248 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTTGCCAATTCAGAA+GGG	0.619795	4_1:+62164871	None:intergenic
AAACTATGATCATGATCATA+AGG	0.454111	4_1:+62165630	None:intergenic
AAACTTTGGTAATACTCTGG+TGG	0.570330	4_1:+62162641	None:intergenic
AACAACAAGATTAGGACAGT+TGG	0.495558	4_1:+62165220	None:intergenic
AACATATCTAAAGAAGATAA+AGG	0.409849	4_1:+62165374	None:intergenic
AACATGCTTGGTCTTCTAGA+AGG	0.448647	4_1:+62162350	None:intergenic
AACTCGTGTAAAGGAGTTGG+AGG	0.535189	4_1:-62163982	Msa0562350:CDS
AACTGGTCAAATTCCATCTA+GGG	0.471732	4_1:-62163590	Msa0562350:CDS
AAGACCAGTGACTCTTCCAA+GGG	0.627086	4_1:+62165442	None:intergenic
AAGACTGTAATTTATTCAAT+TGG	0.349353	4_1:+62164928	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGATCATGATCATAAGGA+GGG	+	chr4_1:62162329-62162348	None:intergenic	30.0%
TTCTATCAAAACTGATGCAA+AGG	-	chr4_1:62162393-62162412	Msa0562350:CDS	30.0%
TTGATTCAGAAAGATCCAAA+TGG	-	chr4_1:62162436-62162455	Msa0562350:CDS	30.0%
ACTATATGGTAACTTAAGCA+AGG	+	chr4_1:62162659-62162678	None:intergenic	30.0%
TCAAGCTGTGTTATACTATA+TGG	+	chr4_1:62162673-62162692	None:intergenic	30.0%
CTTTCTTACAACAATCTTAC+AGG	-	chr4_1:62162769-62162788	Msa0562350:CDS	30.0%
CTTTCACACAATCAAATTAC+TGG	-	chr4_1:62163060-62163079	Msa0562350:CDS	30.0%
AAACATTTGCCAATTCAGAA+GGG	+	chr4_1:62163092-62163111	None:intergenic	30.0%
GTACAAGAATTGAAACCAAA+TGG	+	chr4_1:62163168-62163187	None:intergenic	30.0%
TTGGTTTCAATTCTTGTACT+TGG	-	chr4_1:62163169-62163188	Msa0562350:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	62162283	62165699	62162283	ID=Msa0562350;Name=Msa0562350
chr4_1	mRNA	62162283	62165699	62162283	ID=Msa0562350-mRNA-1;Parent=Msa0562350;Name=Msa0562350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|1138
chr4_1	exon	62162283	62165699	62162283	ID=Msa0562350-mRNA-1:exon:19654;Parent=Msa0562350-mRNA-1
chr4_1	CDS	62162283	62165699	62162283	ID=Msa0562350-mRNA-1:cds;Parent=Msa0562350-mRNA-1

Gene Sequence

>Msa0562350

ATGGAGAATAACCCACTTCAGCTTTTACCTCATCTCACTTTAACCCTCCTTATGATCATGATCATAGTTTTGTTTCCTATTAGTACTGCTGAAGCAACTGCAACAGGTTCTTCTATCAAAACTGATGCAAAGGCTCTTCTTGCATTCAAAAAATTGATTCAGAAAGATCCAAATGGAGCTTTATCAAGTTGGAATCCAAAAACCAACCCATGCACATGGGATGGTGTGACTTGCACCCTTGGAAGAGTCACTGGTCTTGAAGTTAGTGGAAACAATGATGTTTCTGGAATTATTTCTCTTGATCCTTTATCTTCTTTAGATATGTTATCTGTTTTGAAATTTTCTCTTAATTCATTTTCTGTAAATTCCACTTCCTTGCTTAAGTTACCATATAGTATAACACAGCTTGATCTATTCCTTGGTAAAGTTTTAGGTCCTGTTCCTGAAAATTTATTCTCCAACTGTCCTAATCTTGTTGTTGTAAATCTTTCTTACAACAATCTTACAGGTCCTATTCCTGATAACTTTATACAAAATTCTGATAAGCTTCAGACCCTTGATTTATCTTTCAACAATTTGACAGGTTCAATTTCTGATATCAAAATTGATTGTAAATCATTGTTGCAACTTGATCTATCAGGAAACAATTTATCAGACTCATTTCCAATTTCTTTATCAAATTGCACAAGCCTTAAGAGTTTGAATTTAGCAAGCAATTTTATTTCTGGTGGAATTCCAAAGGCTTTAGGCCAATTGAATAAATTACAGTCTTTGGATCTTTCACACAATCAAATTACTGGTTGGATCCCTTCTGAATTGGCAAATGTTTGTGGTTCTCTTTTAGAACTTAAACTTTCTTTCAACAATATTACTGGTTCAATTCCATTTGGTTTCAATTCTTGTACTTGGCTTCAACTAGTTGATATTTCCAACAACAATATGACAGGTGAATTACCTGAGTCGGTAATTCGGAGCCTCGGATCATTGCAGGAACTTAGGTTGGGAAATAATGCTATTTCTATGAAATTTCCATCTTCAATATCTTCATTGAAAAAATTGAGGATTGTGGATTTTAGTTCAAATAAAATTTATGGATCCATCCCTAGAGATTTGTGTCCAGGTGCAGGTTCACTTGAGGAGCTTAGAATGCCAGATAATCTCATAAAAGGGGAAATTCCAGCTGAATTGTCAAAGTGTTCACAATTGAAGACTATTGATTTTAGTTTGAACTATCTCAATGGTTCAATTCCTGATGAGTTGGGAGAGCTTGAGAATCTTGAGCAGCTAATAGCATGGTTCAATGGTTTGGAAGGAAAAATTCCACCAAAGTTGGGACAATGTAAGAATCTTAAGGATCTTATATTGAATAATAATCACCTTAGTGGTGGAATTCCAACTGAGTTGTTCAACTGCAGCAATCTTGAATGGATATCACTGACAAGCAATGAGCTCACAGGCGAAATACCACGAGAGTTCGGACTTTTGACAAGGTTAGCTGTTCTGCAGCTTGGAAACAACGGTTTTACAGGTGAGATACCATCAGAGCTAGGAAATTGCAACAGTTTGGTGTGGTTGGACTTGAACAGCAACAAACTCACAGGAGAGATCCCTCCTAGACTTGGAAGGCAGCAAGGAGCAAAATCGTTGTTTGGCATTCTTTCAGGAAACACTTTGGTGTTTGTAAGAAATGTCGGAAACTCGTGTAAAGGAGTTGGAGGTTTGCTGGAATTCTCAGGAATCCGATCCGAACGGCTCTCACAGGTAGCATCATTGAGGTCTTGTGATTTCACAAGACTTTATTCTGGTCCTGTACTCAGCTTGTTTACAAAATACCAGACTCTGGAGTATCTTGATCTCTCCTACAATCAGCTTCGCGGAAAAATACCGGACGAATTTGGAGATATGGTGGCCTTACAGGTACTTGAGTTGTCTCACAATCAACTATCTGGTGAAATCCCTTCAACCCTTGGCCAGCTCAAAAATTTAGGAGTGTTTGATGCATCACATAATAGACTACAGGGTACTATCCCAGACTCATTCTCAAACCTATCATTTTTGGTGCAAATAGACCTATCTTACAATGAGTTAACTGGTCAAATTCCATCTAGGGGACAACTAAGTACACTTCCAGCCACTCAGTATGCAAACAATCCAGGTCTGTGCGGCGTTCCATTGCCCGAGTGTAAGAATGACAACAGCCAATCTACATCAAATCCAAGTGATGATGTTGGCAGAGGAGGACATAGAAGATCAGTTGCATCATGGGCAAATAACATTGTCATGGGAATTCTTATTTCTGTTGCTTCTGTATGCATTTTAATCGTGTGGGCAATTGCGATGCGCGTAAGGAGGAGAGAGGCCAAGGAAGTCAAGATGCTTAATAGATTGCAAGCATGCCATGCTGCTACAACATGGAAAATTGATAAAGAGAAAGAGCCGTTAAGCATTAATGTTGCAACATTTCAGAGGCAACTGAGGAAGCTTAAATTCTCACAGTTGATTGAAGCAACCAATGGTTTCTCAGCAGAAAGCCTCATTGGTTGTGGTGGTTTTGGTGAAGTGTTCAAGGCCACACTCAAAGACGGAACATGTGTCGCGATAAAGAAGCTCATTCGTCTGAGTTGCCAAGGCGATAGAGAATTCATGGCTGAGATGGAAACCTTAGGAAAAATCAAGCATAGAAACCTTGTCCCTTTATTGGGATACTGCAAAGTAGGAGAAGAGAGGCTGCTTGTTTATGAATACATGGAATACGGAAGCCTGGAAGAGATGCTCCACGGAAGAATAAAGACACGTGATCGACGAATTTTAACATGGGAAGAAAGGAAGAAGATTGCAAGAGGTGCTGCTAAAGGACTTTGTTTTCTGCATCATAATTGCATCCCTCACATCATACACAGAGACATGAAATCAAGCAATGTGTTACTTGACAATGAAATGGAGTCAAGAGTCTCGGATTTCGGAATGGCAAGACTAATAAGTGCCCTTGATACACATCTCAGTGTAAGCACACTAGCAGGAACACCTGGATATGTTCCACCAGAGTATTACCAAAGTTTCAGGTGCACTGCAAAGGGTGATGTTTATTCATTTGGTGTTGTAATGTTGGAACTTCTTAGTGGGAAAAGGCCTACTGATAAGGAAGATTTTGGTGACACAAACTTGGTTGGATGGGCTAAGATTAAGGTGCGCGAAGGGAAACAAATGGAAGTAATTGACACTGATTTACTTTTGGAGAGCCAAGGAGGAACAAATGAAGCAGAAGTGAAAGAAGTGAAAGAAATGCTAAGATATTTGGAGGTTACTTTGCGGTGCGTCGATGATTTGCCTTCTAGAAGACCAAGCATGTTGCAGGTAGTGGCCTTGTTGAGAGAGCTTATACCTGGATCAACTGATGGAAGTAGCAGCAGTGCTTAA

Protein sequence

>Msa0562350

MENNPLQLLPHLTLTLLMIMIIVLFPISTAEATATGSSIKTDAKALLAFKKLIQKDPNGALSSWNPKTNPCTWDGVTCTLGRVTGLEVSGNNDVSGIISLDPLSSLDMLSVLKFSLNSFSVNSTSLLKLPYSITQLDLFLGKVLGPVPENLFSNCPNLVVVNLSYNNLTGPIPDNFIQNSDKLQTLDLSFNNLTGSISDIKIDCKSLLQLDLSGNNLSDSFPISLSNCTSLKSLNLASNFISGGIPKALGQLNKLQSLDLSHNQITGWIPSELANVCGSLLELKLSFNNITGSIPFGFNSCTWLQLVDISNNNMTGELPESVIRSLGSLQELRLGNNAISMKFPSSISSLKKLRIVDFSSNKIYGSIPRDLCPGAGSLEELRMPDNLIKGEIPAELSKCSQLKTIDFSLNYLNGSIPDELGELENLEQLIAWFNGLEGKIPPKLGQCKNLKDLILNNNHLSGGIPTELFNCSNLEWISLTSNELTGEIPREFGLLTRLAVLQLGNNGFTGEIPSELGNCNSLVWLDLNSNKLTGEIPPRLGRQQGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRSERLSQVASLRSCDFTRLYSGPVLSLFTKYQTLEYLDLSYNQLRGKIPDEFGDMVALQVLELSHNQLSGEIPSTLGQLKNLGVFDASHNRLQGTIPDSFSNLSFLVQIDLSYNELTGQIPSRGQLSTLPATQYANNPGLCGVPLPECKNDNSQSTSNPSDDVGRGGHRRSVASWANNIVMGILISVASVCILIVWAIAMRVRRREAKEVKMLNRLQACHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGCGGFGEVFKATLKDGTCVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRIKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDNEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWAKIKVREGKQMEVIDTDLLLESQGGTNEAEVKEVKEMLRYLEVTLRCVDDLPSRRPSMLQVVALLRELIPGSTDGSSSSA*