AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0619710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619710 MtrunA17_Chr8g0385291 82.967 546 46 9 1 542 1 503 0.0 882
Msa0619710 MtrunA17_Chr3g0131071 65.035 572 151 13 9 542 13 573 0.0 657
Msa0619710 MtrunA17_Chr4g0014901 68.992 387 111 5 156 536 207 590 0.0 554
Msa0619710 MtrunA17_Chr4g0014911 65.396 341 113 1 202 537 121 461 3.39e-160 464
Msa0619710 MtrunA17_Chr2g0293201 53.333 345 153 4 203 540 124 467 3.00e-130 388
Msa0619710 MtrunA17_Chr4g0004981 52.367 338 150 7 200 530 104 437 1.29e-117 355
Msa0619710 MtrunA17_Chr1g0183881 43.909 353 184 6 197 540 120 467 1.45e-99 309
Msa0619710 MtrunA17_Chr7g0243541 44.578 332 131 8 205 530 100 384 2.39e-87 275
Msa0619710 MtrunA17_Chr3g0131581 30.516 213 132 6 215 425 64 262 5.48e-19 87.0
Msa0619710 MtrunA17_Chr8g0385681 29.954 217 128 7 215 425 47 245 3.09e-16 79.0
Msa0619710 MtrunA17_Chr3g0144911 30.317 221 129 7 220 425 110 320 5.40e-16 80.5
Msa0619710 MtrunA17_Chr4g0035391 27.982 218 138 6 220 425 107 317 1.43e-15 79.7
Msa0619710 MtrunA17_Chr8g0385691 29.493 217 129 7 215 425 44 242 1.65e-15 76.6
Msa0619710 MtrunA17_Chr1g0155521 28.899 218 136 7 220 425 112 322 3.20e-15 78.6
Msa0619710 MtrunA17_Chr4g0035381 27.064 218 140 6 220 425 84 294 1.14e-14 75.9
Msa0619710 MtrunA17_Chr5g0404711 25.974 231 146 7 220 435 76 296 1.17e-14 76.6
Msa0619710 MtrunA17_Chr4g0035361 26.754 228 148 6 220 435 1 221 1.38e-13 73.2
Msa0619710 MtrunA17_Chr3g0144891 26.316 228 149 6 220 435 97 317 3.97e-13 72.0
Msa0619710 MtrunA17_Chr7g0236461 27.189 217 139 6 221 425 101 310 5.88e-13 71.6
Msa0619710 MtrunA17_Chr8g0372651 28.139 231 141 7 220 435 79 299 1.27e-12 70.5
Msa0619710 MtrunA17_Chr3g0141821 28.507 221 133 8 220 425 93 303 7.33e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619710 AT4G09160.1 66.568 338 108 1 205 537 326 663 3.98e-172 502
Msa0619710 AT4G09160.2 66.568 338 108 1 205 537 301 638 4.58e-172 501
Msa0619710 AT4G09160.3 66.568 338 108 1 205 537 301 638 5.87e-172 501
Msa0619710 AT1G72160.1 66.082 342 111 1 201 537 147 488 1.48e-168 487
Msa0619710 AT1G22530.2 55.297 387 155 5 154 538 279 649 1.63e-144 431
Msa0619710 AT1G22530.1 55.297 387 155 5 154 538 313 683 1.76e-144 432
Msa0619710 AT1G72150.1 48.262 489 209 9 85 537 93 573 1.43e-141 421
Msa0619710 AT1G30690.1 48.986 345 163 7 203 541 202 539 3.40e-117 357
Msa0619710 AT1G30690.2 48.986 345 163 7 203 541 202 539 3.40e-117 357
Msa0619710 AT3G51670.1 47.872 376 185 8 171 539 34 405 7.67e-114 344
Msa0619710 AT1G01630.1 30.435 253 150 9 185 425 7 245 1.76e-18 85.9
Msa0619710 AT4G39180.1 29.817 218 134 6 220 425 96 306 1.58e-17 86.3
Msa0619710 AT4G39180.3 29.817 218 134 6 220 425 96 306 1.69e-17 86.3
Msa0619710 AT4G39180.2 29.817 218 134 6 220 425 96 306 1.69e-17 86.3
Msa0619710 AT2G21540.3 28.440 218 137 6 220 425 95 305 3.07e-16 82.0
Msa0619710 AT2G21540.5 28.440 218 137 6 220 425 95 305 3.07e-16 82.0
Msa0619710 AT2G21540.6 28.440 218 137 6 220 425 95 305 3.17e-16 82.0
Msa0619710 AT2G21540.2 28.440 218 137 6 220 425 95 305 3.17e-16 82.0
Msa0619710 AT2G21540.1 28.440 218 137 6 220 425 95 305 3.17e-16 82.0
Msa0619710 AT2G21540.4 28.440 218 137 6 220 425 95 305 3.17e-16 82.0
Msa0619710 AT4G34580.2 28.054 221 134 7 220 425 88 298 2.09e-15 79.7
Msa0619710 AT4G34580.1 28.054 221 134 7 220 425 88 298 2.09e-15 79.7
Msa0619710 AT3G24840.1 28.634 227 143 7 221 435 104 323 4.64e-15 78.6
Msa0619710 AT3G24840.6 28.634 227 143 7 221 435 104 323 4.64e-15 78.6
Msa0619710 AT3G24840.4 28.634 227 143 7 221 435 104 323 4.64e-15 78.6
Msa0619710 AT3G24840.2 28.634 227 143 7 221 435 104 323 4.64e-15 78.6
Msa0619710 AT3G24840.7 28.634 227 143 7 221 435 104 323 4.78e-15 78.6
Msa0619710 AT3G24840.3 28.634 227 143 7 221 435 104 323 4.78e-15 78.6
Msa0619710 AT3G24840.5 28.634 227 143 7 221 435 104 323 4.78e-15 78.6
Msa0619710 AT1G19650.1 28.571 231 140 7 220 435 104 324 1.07e-14 77.4
Msa0619710 AT2G16380.2 26.754 228 148 6 220 435 88 308 1.56e-14 76.6
Msa0619710 AT2G16380.1 26.754 228 148 6 220 435 88 308 1.56e-14 76.6
Msa0619710 AT1G19650.3 29.412 221 131 7 220 425 104 314 6.45e-14 74.3
Msa0619710 AT1G19650.2 28.261 230 140 7 221 435 33 252 1.27e-13 73.9
Msa0619710 AT4G39170.1 28.632 234 136 9 220 435 108 328 1.59e-13 73.9
Msa0619710 AT4G39170.2 28.632 234 136 9 220 435 108 328 1.62e-13 73.6
Msa0619710 AT2G21520.1 26.050 238 156 7 211 435 100 330 4.66e-13 72.4
Msa0619710 AT2G21520.2 26.050 238 156 7 211 435 104 334 4.85e-13 72.4
Msa0619710 AT2G21520.3 26.050 238 156 7 211 435 104 334 4.85e-13 72.4
Msa0619710 AT1G22180.2 26.818 220 141 5 217 432 45 248 9.11e-13 69.7
Msa0619710 AT1G22180.4 26.818 220 141 5 217 432 45 248 9.11e-13 69.7
Msa0619710 AT4G08690.2 25.000 220 141 6 217 430 42 243 1.14e-11 66.2
Msa0619710 AT4G08690.1 25.000 220 141 6 217 430 42 243 1.14e-11 66.2
Msa0619710 AT4G08690.3 25.000 220 141 6 217 430 42 243 1.14e-11 66.2
Msa0619710 AT1G75370.1 26.754 228 148 7 220 435 113 333 1.29e-11 67.8
Msa0619710 AT1G75170.2 25.701 214 138 6 217 425 43 240 3.77e-11 64.7
Msa0619710 AT1G75170.1 25.701 214 138 6 217 425 43 240 3.77e-11 64.7
Msa0619710 AT1G75370.2 26.754 228 148 7 220 435 113 333 5.61e-11 65.9

Find 158 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAACTGAATTCTCCATTTA+AGG 0.132695 4_2:-70890542 None:intergenic
TAATAGAGGTGATGGGTTTA+AGG 0.153149 4_2:-70889566 None:intergenic
CCTGAGGAAGTATCCATTTA+TGG 0.183327 4_2:+70890225 Msa0619710:CDS
TCTTGGGAGGTGAGAGTAAT+AGG 0.186017 4_2:+70892103 Msa0619710:CDS
AGAGACAAAATTTCCTTAAA+TGG 0.187206 4_2:+70890529 Msa0619710:CDS
GCAACAGGTTCTTGCTTTGC+AGG 0.224764 4_2:-70890171 None:intergenic
ACCTGTTTGGCCACAAATTC+GGG 0.225030 4_2:-70890714 None:intergenic
ATTCTCTGGAGAAAAGAATT+TGG 0.227723 4_2:+70890351 Msa0619710:CDS
ATTCTCCTGGACCTGGTAAA+TGG 0.228568 4_2:+70890640 Msa0619710:CDS
TTGAGTAAAGATGGTGAATT+TGG 0.244972 4_2:+70891242 Msa0619710:CDS
ACAAGCCCTTCAATTGTTTC+AGG 0.268118 4_2:+70890683 Msa0619710:CDS
TTCTTCTTCGGTATTAGATT+TGG 0.269327 4_2:-70889806 None:intergenic
TACCTGTTTGGCCACAAATT+CGG 0.279110 4_2:-70890715 None:intergenic
AGTTCCTTGAGAAGAGTATT+AGG 0.285523 4_2:+70890559 Msa0619710:CDS
CCATTGACAACACAAGTTCT+AGG 0.290988 4_2:+70892275 Msa0619710:CDS
AAAAGCAAGTTTGTCTTTGC+TGG 0.291845 4_2:+70891058 Msa0619710:CDS
ATTTGGAATAGAGGAGTTAA+TGG 0.294500 4_2:+70890368 Msa0619710:CDS
AAGGAGTGGTATCCCATAAA+TGG 0.296881 4_2:-70890238 None:intergenic
TGTTCATGTCAATGATCTTA+AGG 0.301789 4_2:+70890617 Msa0619710:CDS
ATCTTGTTGCTCTGACTCTA+AGG 0.326417 4_2:-70889728 None:intergenic
AGCAAAGACAAACTTGCTTT+TGG 0.331662 4_2:-70891056 None:intergenic
TGATGATGAATGAATATAAC+TGG 0.337085 4_2:-70889379 None:intergenic
TGCAGAAATGTATACTATCT+TGG 0.342464 4_2:+70892086 Msa0619710:intron
TCAGTCAGAGAGTGAAGATT+TGG 0.342948 4_2:-70892326 None:intergenic
CAAATTATCGGCGGTATTGC+CGG 0.349805 4_2:-70889355 None:intergenic
CAACAACATGTGGTGTTGTT+TGG 0.359368 4_2:-70889648 None:intergenic
AATAGAGGTGATGGGTTTAA+GGG 0.362709 4_2:-70889565 None:intergenic
GTTTCAACTTTCTCTGCAAC+AGG 0.363178 4_2:-70890186 None:intergenic
AGTTCAATTTGAAGATCATT+TGG 0.363250 4_2:-70892440 None:intergenic
GAGTTAATGGATGAGAAATT+AGG 0.366666 4_2:+70890381 Msa0619710:CDS
AATATAACTGGGCAAATTAT+CGG 0.385445 4_2:-70889367 None:intergenic
GAGTAATAGGGTGGGAAGTA+AGG 0.385717 4_2:+70892116 Msa0619710:CDS
TGAGAAATTAGGTGATGAAT+TGG 0.386783 4_2:+70890392 Msa0619710:CDS
AGTTGAAAAGAGAGCTAAGT+TGG 0.387163 4_2:+70889264 None:intergenic
AGACAATCAAATTACCTGTT+TGG 0.387293 4_2:-70890727 None:intergenic
CCCCGAATTTGTGGCCAAAC+AGG 0.390025 4_2:+70890713 Msa0619710:CDS
AAACAATTGAAGGGCTTGTT+TGG 0.391690 4_2:-70890679 None:intergenic
ATAATCAAACAAAACAATTT+CGG 0.397732 4_2:-70892395 None:intergenic
AGGAATAATGTGAAGAGAAA+AGG 0.397998 4_2:-70889594 None:intergenic
ACATGTGGTGTTGTTTGGTT+TGG 0.400074 4_2:-70889643 None:intergenic
GTTTGGAATATCAGAAGGTT+TGG 0.400595 4_2:-70889851 None:intergenic
TTTGTTGAAAGTTTCTTCTT+CGG 0.404596 4_2:-70889818 None:intergenic
CTGAGGAAGTATCCATTTAT+GGG 0.406828 4_2:+70890226 Msa0619710:CDS
CTTGTGCAGGTTCTTCTGGT+GGG 0.413583 4_2:-70889984 None:intergenic
CCCATGAAAATAGAACCTTT+TGG 0.416110 4_2:+70889314 Msa0619710:five_prime_UTR
AAAGGAAGAAGGAGATAAGA+AGG 0.419922 4_2:+70890047 Msa0619710:CDS
TTGGTTCTCTGGGTAAGAAA+AGG 0.421719 4_2:-70891037 None:intergenic
CTCAATCCACCGTACTTCAC+AGG 0.426324 4_2:-70891224 None:intergenic
GCAGAAATGTATACTATCTT+GGG 0.426741 4_2:+70892087 Msa0619710:intron
TGAGAAGAGTATTAGGAACT+TGG 0.426783 4_2:+70890566 Msa0619710:CDS
CGTCACTTCTTTCGTCTACA+AGG 0.435281 4_2:-70890257 None:intergenic
AATCATCATGTTTGCACAAG+TGG 0.436481 4_2:+70892353 Msa0619710:three_prime_UTR
CTATACTGTGATTGTCCAAA+AGG 0.437811 4_2:+70892174 Msa0619710:CDS
TTCTCCTGGACCTGGTAAAT+GGG 0.441533 4_2:+70890641 Msa0619710:CDS
CCTAGAACTTGTGTTGTCAA+TGG 0.442818 4_2:-70892275 None:intergenic
AGTAGTAGGAAGGTGGAGCC+AGG 0.442834 4_2:-70889465 None:intergenic
CTGCTACTGAGATCACAATA+AGG 0.444194 4_2:+70891276 Msa0619710:CDS
GTATAGCTTCCTTCATTGCT+TGG 0.448666 4_2:-70892157 None:intergenic
GAGAAAAGAATTTGGAATAG+AGG 0.448687 4_2:+70890359 Msa0619710:CDS
TTACATGCATGGATTTGATA+AGG 0.449042 4_2:+70890425 Msa0619710:CDS
AGGTGATGAATTGGAGAAAG+TGG 0.450262 4_2:+70890401 Msa0619710:CDS
CAAAAGGGTCTCAGTTGACT+TGG 0.453511 4_2:-70891086 None:intergenic
TTCCTTTCAATCATTCCAAA+AGG 0.458743 4_2:-70889329 None:intergenic
GAGAAAAGGAATTGTAATAG+AGG 0.461429 4_2:-70889580 None:intergenic
TGGTTCTCTGGGTAAGAAAA+GGG 0.464110 4_2:-70891036 None:intergenic
TACTTCACAGGGAGTTGCTC+TGG 0.465408 4_2:-70891212 None:intergenic
TGATTAAGAACACGATTCTC+TGG 0.467531 4_2:+70890337 Msa0619710:CDS
GGACAATTACCCCGAATTTG+TGG 0.468856 4_2:+70890704 Msa0619710:CDS
CCTGTGTGTTATAACATATA+TGG 0.470073 4_2:+70890456 Msa0619710:CDS
TACGGTGGATTGAGTAAAGA+TGG 0.480608 4_2:+70891233 Msa0619710:CDS
GATACTTCCTCAGGTGGTAA+TGG 0.483512 4_2:-70890216 None:intergenic
TCTTGTGCAGGTTCTTCTGG+TGG 0.483607 4_2:-70889985 None:intergenic
AGGAATTGTAATAGAGGTGA+TGG 0.486222 4_2:-70889574 None:intergenic
AAAGACGAAGAAAAGGAAGA+AGG 0.486264 4_2:+70890036 Msa0619710:CDS
AAAGCAAGTTTGTCTTTGCT+GGG 0.493026 4_2:+70891059 Msa0619710:CDS
AGATCATTTGGTGGTAAAAG+TGG 0.493558 4_2:-70892428 None:intergenic
CAATGTGCCATGGTGGTACT+TGG 0.493581 4_2:+70890994 Msa0619710:CDS
TGGAATATCAGAAGGTTTGG+TGG 0.495296 4_2:-70889848 None:intergenic
AATTGTCCTGAAACAATTGA+AGG 0.495434 4_2:-70890689 None:intergenic
AACGAAGAAAGACGAAGAAA+AGG 0.495758 4_2:+70890029 Msa0619710:CDS
CCATAAATGGATACTTCCTC+AGG 0.496479 4_2:-70890225 None:intergenic
TAAGAAGGAAGAGGAAGTGA+AGG 0.497688 4_2:+70890062 Msa0619710:CDS
CCTTCCTACTACTTCCAACC+TGG 0.501872 4_2:+70889475 Msa0619710:five_prime_UTR
AGTTCCCATTTACCAGGTCC+AGG 0.502724 4_2:-70890645 None:intergenic
CTTGGGAGGTGAGAGTAATA+GGG 0.506539 4_2:+70892104 Msa0619710:CDS
TGCAGGTTCTTCTGGTGGGG+TGG 0.508197 4_2:-70889980 None:intergenic
ATGAGTCTCAAGAGTGATGT+TGG 0.508469 4_2:-70889779 None:intergenic
AGAAGGAGATAAGAAGGAAG+AGG 0.510068 4_2:+70890053 Msa0619710:CDS
GAGAAAGTGGTTTACATGCA+TGG 0.510618 4_2:+70890414 Msa0619710:CDS
GGTGGTACTTGGCAGTGAAT+AGG 0.518645 4_2:+70891005 Msa0619710:CDS
TCAATTTGAAGATCATTTGG+TGG 0.520392 4_2:-70892437 None:intergenic
AAATAGAAGTTAACTAAAGC+AGG 0.521019 4_2:+70889287 Msa0619710:five_prime_UTR
TTTGGAATGATTGAAAGGAA+TGG 0.530582 4_2:+70889332 Msa0619710:five_prime_UTR
TGTCTAAGTTCCCATTTACC+AGG 0.530869 4_2:-70890651 None:intergenic
GTATCTTCTGTGGAGGATGA+TGG 0.535272 4_2:+70890093 Msa0619710:CDS
GGTGATGGGTTTAAGGGGAA+AGG 0.537560 4_2:-70889559 None:intergenic
TTGTGCAGGTTCTTCTGGTG+GGG 0.538607 4_2:-70889983 None:intergenic
AATGATCTTAAGGATTCTCC+TGG 0.539991 4_2:+70890627 Msa0619710:CDS
GAATTTGTACCAAGCAATGA+AGG 0.540167 4_2:+70892148 Msa0619710:CDS
TGTAGAATTTCCTGTTACTG+AGG 0.540830 4_2:+70891316 Msa0619710:CDS
CTTAAGGATTCTCCTGGACC+TGG 0.542401 4_2:+70890633 Msa0619710:CDS
CCAACCAGGTTGGAAGTAGT+AGG 0.549032 4_2:-70889479 None:intergenic
ATGGTAAGAACAACTTTACC+AGG 0.550180 4_2:-70892256 None:intergenic
ACTCTATTGATATGAACAGC+AGG 0.550851 4_2:-70892465 None:intergenic
GAATGATTGAAAGGAATGGC+CGG 0.551815 4_2:+70889336 Msa0619710:five_prime_UTR
TTGGTAGAGCAGAGAAGGCA+TGG 0.554359 4_2:-70889930 None:intergenic
CCTACTACTTCCAACCTGGT+TGG 0.554708 4_2:+70889479 Msa0619710:five_prime_UTR
AGTTTCAAAATTAGTGAACC+TGG 0.558010 4_2:+70892238 Msa0619710:CDS
ATCGTGGGACATGTTGGAAG+AGG 0.563039 4_2:-70889614 None:intergenic
GTAGTAGGAAGGTGGAGCCA+GGG 0.564401 4_2:-70889464 None:intergenic
GGAATTGTAATAGAGGTGAT+GGG 0.567103 4_2:-70889573 None:intergenic
GAGCAACTCCCTGTGAAGTA+CGG 0.569298 4_2:+70891215 Msa0619710:CDS
AGAGTCATCGTGGGACATGT+TGG 0.571010 4_2:-70889620 None:intergenic
TCATTGTTTGGAATATCAGA+AGG 0.571936 4_2:-70889856 None:intergenic
AGGTGTTCATCAATGTGCCA+TGG 0.572219 4_2:+70890984 Msa0619710:intron
GGGAGGTGAGAGTAATAGGG+TGG 0.573952 4_2:+70892107 Msa0619710:CDS
GTGAGTATGTTGTGCCAACC+AGG 0.574096 4_2:-70889493 None:intergenic
TGTCCAAAAGGCAAGAAAAG+TGG 0.574530 4_2:+70892186 Msa0619710:CDS
ATGCATGGATTTGATAAGGA+AGG 0.579630 4_2:+70890429 Msa0619710:CDS
GGAAAATGTAGTATCTTCTG+TGG 0.580397 4_2:+70890083 Msa0619710:CDS
TCTTGTTGCTCTGACTCTAA+GGG 0.581269 4_2:-70889727 None:intergenic
AGTTCCTAATACTCTTCTCA+AGG 0.586771 4_2:-70890563 None:intergenic
AGAAGTTAACTAAAGCAGGC+AGG 0.594282 4_2:+70889291 Msa0619710:five_prime_UTR
TTCATTGCCATTACCACCTG+AGG 0.595484 4_2:+70890209 Msa0619710:CDS
CTTCTTTCGTCTACAAGGAG+TGG 0.596620 4_2:-70890252 None:intergenic
AACAACACCACATGTTGTTG+AGG 0.598014 4_2:+70889651 Msa0619710:CDS
ATAGGGTGGGAAGTAAGGTA+TGG 0.600440 4_2:+70892121 Msa0619710:CDS
ATTGTCCTGAAACAATTGAA+GGG 0.601114 4_2:-70890688 None:intergenic
TAACATTGCATTGCAGACCC+TGG 0.602554 4_2:+70889447 Msa0619710:five_prime_UTR
AGGGTCTCAGTTGACTTGGA+AGG 0.603122 4_2:-70891082 None:intergenic
CCATATATGTTATAACACAC+AGG 0.604070 4_2:-70890456 None:intergenic
TTGGTTTGGAGAGTCATCGT+GGG 0.606315 4_2:-70889629 None:intergenic
GGAGGTGAGAGTAATAGGGT+GGG 0.610127 4_2:+70892108 Msa0619710:CDS
ATAGAGGTGATGGGTTTAAG+GGG 0.610223 4_2:-70889564 None:intergenic
GGTTGGAAGTAGTAGGAAGG+TGG 0.614157 4_2:-70889472 None:intergenic
TAGTAGTTGCAAAACAAACG+TGG 0.615786 4_2:-70889426 None:intergenic
TATTGAAGAAAGCGTTGTTG+CGG 0.623757 4_2:+70890134 Msa0619710:CDS
TCAATCCACCGTACTTCACA+GGG 0.625536 4_2:-70891223 None:intergenic
TTTGGTTTGGAGAGTCATCG+TGG 0.627279 4_2:-70889630 None:intergenic
AAATGTAGTATCTTCTGTGG+AGG 0.629752 4_2:+70890086 Msa0619710:CDS
AGAACCTGCACAAGAAAACA+AGG 0.630005 4_2:+70889993 Msa0619710:CDS
TTCTTGCTTTGCAGGAACAG+AGG 0.630059 4_2:-70890163 None:intergenic
TAAATGGATACTTCCTCAGG+TGG 0.634257 4_2:-70890222 None:intergenic
GTGAAGATTTGGTCTTCAAG+CGG 0.637718 4_2:-70892315 None:intergenic
CCAGGTTGGAAGTAGTAGGA+AGG 0.642316 4_2:-70889475 None:intergenic
GAAATGTATACTATCTTGGG+AGG 0.647101 4_2:+70892090 Msa0619710:intron
ACAACTTCCTCAACAACATG+TGG 0.651182 4_2:-70889658 None:intergenic
CCTGTTTGGCCACAAATTCG+GGG 0.652164 4_2:-70890713 None:intergenic
CATATATGTTATAACACACA+GGG 0.656526 4_2:-70890455 None:intergenic
ATATGGTGAATTTCAGAACA+AGG 0.659457 4_2:+70890473 Msa0619710:CDS
CAACTCCCTGTGAAGTACGG+TGG 0.660112 4_2:+70891218 Msa0619710:CDS
AGTAGTTGCAAAACAAACGT+GGG 0.675046 4_2:-70889425 None:intergenic
TTCACTGCCAAGTACCACCA+TGG 0.690995 4_2:-70891001 None:intergenic
ATAACTGGGCAAATTATCGG+CGG 0.704638 4_2:-70889364 None:intergenic
TGTTCATCAATGTGCCATGG+TGG 0.709016 4_2:+70890987 Msa0619710:CDS
GTATGTTGTGCCAACCAGGT+TGG 0.709233 4_2:-70889489 None:intergenic
CAATAGTGCATACACCACCA+TGG 0.712017 4_2:-70890596 None:intergenic
GATGATGAATGAATATAACT+GGG 0.716682 4_2:-70889378 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACATACAATTTTTTTATA+TGG + chr4_2:70890901-70890920 Msa0619710:intron 10.0%
!!! TGCAATTTTTTGAAATATTA+AGG - chr4_2:70890856-70890875 None:intergenic 15.0%
!!! ATTGTGAATAATTTGATTTT+TGG + chr4_2:70891163-70891182 Msa0619710:intron 15.0%
!!! TTGACTTCTTTTTTTTATTT+GGG - chr4_2:70891792-70891811 None:intergenic 15.0%
!!! ATTGACTTCTTTTTTTTATT+TGG - chr4_2:70891793-70891812 None:intergenic 15.0%
!!! AGGTTTGATATTTTTTTATT+TGG + chr4_2:70892057-70892076 Msa0619710:intron 15.0%
!! ATAATCAAACAAAACAATTT+CGG - chr4_2:70892398-70892417 None:intergenic 15.0%
!!! ACTTGTTTTTCTTGTTTTAT+TGG - chr4_2:70889952-70889971 None:intergenic 20.0%
!! TTGTCTTCTTATAACATTAT+TGG + chr4_2:70890744-70890763 Msa0619710:intron 20.0%
!!! TTAACACTTTCTGTTTTTTT+AGG + chr4_2:70890964-70890983 Msa0619710:intron 20.0%
!! GGAATAGAATATAAAATCAA+AGG - chr4_2:70891441-70891460 None:intergenic 20.0%
!!! AATTTTTACAAGCATTAAAG+TGG - chr4_2:70891601-70891620 None:intergenic 20.0%
!!! TGATGTTTTGATTTCTTTAT+AGG + chr4_2:70891865-70891884 Msa0619710:intron 20.0%
!! AAATATCAAACCTTATATCA+AGG - chr4_2:70892050-70892069 None:intergenic 20.0%
! AAATAGAAGTTAACTAAAGC+AGG + chr4_2:70889287-70889306 Msa0619710:five_prime_UTR 25.0%
! AATATAACTGGGCAAATTAT+CGG - chr4_2:70889370-70889389 None:intergenic 25.0%
! GATGATGAATGAATATAACT+GGG - chr4_2:70889381-70889400 None:intergenic 25.0%
!! TGATGATGAATGAATATAAC+TGG - chr4_2:70889382-70889401 None:intergenic 25.0%
! TTTGTTGAAAGTTTCTTCTT+CGG - chr4_2:70889821-70889840 None:intergenic 25.0%
! CATATATGTTATAACACACA+GGG - chr4_2:70890458-70890477 None:intergenic 25.0%
! AGAGACAAAATTTCCTTAAA+TGG + chr4_2:70890529-70890548 Msa0619710:CDS 25.0%
! TTTGCTAAAAGAATATACGT+TGG - chr4_2:70890832-70890851 None:intergenic 25.0%
!! TATATGTTTTCACCTCAAAA+GGG - chr4_2:70891104-70891123 None:intergenic 25.0%
!! TTATATGTTTTCACCTCAAA+AGG - chr4_2:70891105-70891124 None:intergenic 25.0%
!!! TTTTGAGGTGAAAACATATA+AGG + chr4_2:70891104-70891123 Msa0619710:intron 25.0%
!! TTTGAGGTGAAAACATATAA+GGG + chr4_2:70891105-70891124 Msa0619710:intron 25.0%
!!! AGGGTTAAAAATTTGCTTTT+TGG + chr4_2:70891124-70891143 Msa0619710:intron 25.0%
! TAGGATTAAGAATCTTTCAT+AGG + chr4_2:70891379-70891398 Msa0619710:intron 25.0%
! TCAGATAATATTGACAAAAG+AGG - chr4_2:70891408-70891427 None:intergenic 25.0%
!! AGAGCATTCTACATATATAA+AGG + chr4_2:70891697-70891716 Msa0619710:intron 25.0%
! TGAAAACGACTTTAAACAAA+AGG + chr4_2:70891732-70891751 Msa0619710:intron 25.0%
! GACTTTAAACAAAAGGAAAA+AGG + chr4_2:70891739-70891758 Msa0619710:intron 25.0%
! ATCAAAACATCAACATCATT+AGG - chr4_2:70891857-70891876 None:intergenic 25.0%
! ATGTTAGAATTAGTTAGTGA+TGG + chr4_2:70891985-70892004 Msa0619710:intron 25.0%
! AATTCATTTGCCTTGATATA+AGG + chr4_2:70892037-70892056 Msa0619710:intron 25.0%
! AGTTCAATTTGAAGATCATT+TGG - chr4_2:70892443-70892462 None:intergenic 25.0%
! CCAAAAGGTTCTATTTTCAT+GGG - chr4_2:70889317-70889336 None:intergenic 30.0%
! TCCAAAAGGTTCTATTTTCA+TGG - chr4_2:70889318-70889337 None:intergenic 30.0%
!!! AACCTTTTGGAATGATTGAA+AGG + chr4_2:70889327-70889346 Msa0619710:five_prime_UTR 30.0%
TTCCTTTCAATCATTCCAAA+AGG - chr4_2:70889332-70889351 None:intergenic 30.0%
! TTTGGAATGATTGAAAGGAA+TGG + chr4_2:70889332-70889351 Msa0619710:five_prime_UTR 30.0%
GAGAAAAGGAATTGTAATAG+AGG - chr4_2:70889583-70889602 None:intergenic 30.0%
AGGAATAATGTGAAGAGAAA+AGG - chr4_2:70889597-70889616 None:intergenic 30.0%
TTCTTCTTCGGTATTAGATT+TGG - chr4_2:70889809-70889828 None:intergenic 30.0%
! TCATTGTTTGGAATATCAGA+AGG - chr4_2:70889859-70889878 None:intergenic 30.0%
!!! AGTGACTTGTTTTCATTGTT+TGG - chr4_2:70889871-70889890 None:intergenic 30.0%
! GAATGAGAATTTTAAGCTCT+TGG - chr4_2:70889894-70889913 None:intergenic 30.0%
!!! AAGAGATTTTAAGGTGAAAG+AGG + chr4_2:70890305-70890324 Msa0619710:CDS 30.0%
! ATTCTCTGGAGAAAAGAATT+TGG + chr4_2:70890351-70890370 Msa0619710:CDS 30.0%
! GAGAAAAGAATTTGGAATAG+AGG + chr4_2:70890359-70890378 Msa0619710:CDS 30.0%
! ATTTGGAATAGAGGAGTTAA+TGG + chr4_2:70890368-70890387 Msa0619710:CDS 30.0%
! GAGTTAATGGATGAGAAATT+AGG + chr4_2:70890381-70890400 Msa0619710:CDS 30.0%
TGAGAAATTAGGTGATGAAT+TGG + chr4_2:70890392-70890411 Msa0619710:CDS 30.0%
TTACATGCATGGATTTGATA+AGG + chr4_2:70890425-70890444 Msa0619710:CDS 30.0%
CCATATATGTTATAACACAC+AGG - chr4_2:70890459-70890478 None:intergenic 30.0%
CCTGTGTGTTATAACATATA+TGG + chr4_2:70890456-70890475 Msa0619710:CDS 30.0%
ATATGGTGAATTTCAGAACA+AGG + chr4_2:70890473-70890492 Msa0619710:CDS 30.0%
!! CAAGAAAACTTTTTCTGATG+AGG + chr4_2:70890503-70890522 Msa0619710:CDS 30.0%
TGTTCATGTCAATGATCTTA+AGG + chr4_2:70890617-70890636 Msa0619710:CDS 30.0%
ATTGTCCTGAAACAATTGAA+GGG - chr4_2:70890691-70890710 None:intergenic 30.0%
AATTGTCCTGAAACAATTGA+AGG - chr4_2:70890692-70890711 None:intergenic 30.0%
AGACAATCAAATTACCTGTT+TGG - chr4_2:70890730-70890749 None:intergenic 30.0%
! TATACGTTGGTTATTCACAT+TGG - chr4_2:70890819-70890838 None:intergenic 30.0%
TTGAGTAAAGATGGTGAATT+TGG + chr4_2:70891242-70891261 Msa0619710:CDS 30.0%
TAATCCTATGTTGCATTCTT+TGG - chr4_2:70891367-70891386 None:intergenic 30.0%
AGACTGTGAAAGAGATATAT+AGG - chr4_2:70891821-70891840 None:intergenic 30.0%
TATATATCTCTTTCACAGTC+TGG + chr4_2:70891820-70891839 Msa0619710:intron 30.0%
AAAACATCAACATCATTAGG+TGG - chr4_2:70891854-70891873 None:intergenic 30.0%
!! CTAACATTTTACACTAGTCT+AGG - chr4_2:70891972-70891991 None:intergenic 30.0%
TGCAGAAATGTATACTATCT+TGG + chr4_2:70892086-70892105 Msa0619710:intron 30.0%
GCAGAAATGTATACTATCTT+GGG + chr4_2:70892087-70892106 Msa0619710:intron 30.0%
AGTTTCAAAATTAGTGAACC+TGG + chr4_2:70892238-70892257 Msa0619710:CDS 30.0%
TCAATTTGAAGATCATTTGG+TGG - chr4_2:70892440-70892459 None:intergenic 30.0%
! CCCATGAAAATAGAACCTTT+TGG + chr4_2:70889314-70889333 Msa0619710:five_prime_UTR 35.0%
AGTAGTTGCAAAACAAACGT+GGG - chr4_2:70889428-70889447 None:intergenic 35.0%
TAGTAGTTGCAAAACAAACG+TGG - chr4_2:70889429-70889448 None:intergenic 35.0%
!! AATAGAGGTGATGGGTTTAA+GGG - chr4_2:70889568-70889587 None:intergenic 35.0%
!! TAATAGAGGTGATGGGTTTA+AGG - chr4_2:70889569-70889588 None:intergenic 35.0%
GGAATTGTAATAGAGGTGAT+GGG - chr4_2:70889576-70889595 None:intergenic 35.0%
AGGAATTGTAATAGAGGTGA+TGG - chr4_2:70889577-70889596 None:intergenic 35.0%
! TTTTCTTCTCAGGTTCATCA+GGG - chr4_2:70889759-70889778 None:intergenic 35.0%
! GTTTGGAATATCAGAAGGTT+TGG - chr4_2:70889854-70889873 None:intergenic 35.0%
! TTTTATTGGTAGAGCAGAGA+AGG - chr4_2:70889938-70889957 None:intergenic 35.0%
AACGAAGAAAGACGAAGAAA+AGG + chr4_2:70890029-70890048 Msa0619710:CDS 35.0%
AAAGACGAAGAAAAGGAAGA+AGG + chr4_2:70890036-70890055 Msa0619710:CDS 35.0%
AAAGGAAGAAGGAGATAAGA+AGG + chr4_2:70890047-70890066 Msa0619710:CDS 35.0%
GGAAAATGTAGTATCTTCTG+TGG + chr4_2:70890083-70890102 Msa0619710:CDS 35.0%
AAATGTAGTATCTTCTGTGG+AGG + chr4_2:70890086-70890105 Msa0619710:CDS 35.0%
!! TATTGAAGAAAGCGTTGTTG+CGG + chr4_2:70890134-70890153 Msa0619710:CDS 35.0%
!! CTGAGGAAGTATCCATTTAT+GGG + chr4_2:70890226-70890245 Msa0619710:CDS 35.0%
! TCTACGTGCAAGAGATTTTA+AGG + chr4_2:70890296-70890315 Msa0619710:CDS 35.0%
TGATTAAGAACACGATTCTC+TGG + chr4_2:70890337-70890356 Msa0619710:CDS 35.0%
ATGCATGGATTTGATAAGGA+AGG + chr4_2:70890429-70890448 Msa0619710:CDS 35.0%
GGAACTGAATTCTCCATTTA+AGG - chr4_2:70890545-70890564 None:intergenic 35.0%
!! AGTTCCTTGAGAAGAGTATT+AGG + chr4_2:70890559-70890578 Msa0619710:CDS 35.0%
AGTTCCTAATACTCTTCTCA+AGG - chr4_2:70890566-70890585 None:intergenic 35.0%
!! TGAGAAGAGTATTAGGAACT+TGG + chr4_2:70890566-70890585 Msa0619710:CDS 35.0%
!! AGGAACTTGGATTTTAACCA+TGG + chr4_2:70890579-70890598 Msa0619710:CDS 35.0%
!! AACTTGGATTTTAACCATGG+TGG + chr4_2:70890582-70890601 Msa0619710:CDS 35.0%
AATGATCTTAAGGATTCTCC+TGG + chr4_2:70890627-70890646 Msa0619710:CDS 35.0%
! AAACAATTGAAGGGCTTGTT+TGG - chr4_2:70890682-70890701 None:intergenic 35.0%
!!! AAACTTGCTTTTGGTTCTCT+GGG - chr4_2:70891050-70891069 None:intergenic 35.0%
!! AGCAAAGACAAACTTGCTTT+TGG - chr4_2:70891059-70891078 None:intergenic 35.0%
AAAAGCAAGTTTGTCTTTGC+TGG + chr4_2:70891058-70891077 Msa0619710:CDS 35.0%
AAAGCAAGTTTGTCTTTGCT+GGG + chr4_2:70891059-70891078 Msa0619710:CDS 35.0%
!!! TCTACAGTATGTTTTGATGC+TGG - chr4_2:70891302-70891321 None:intergenic 35.0%
TGTAGAATTTCCTGTTACTG+AGG + chr4_2:70891316-70891335 Msa0619710:CDS 35.0%
TTCTATTCCACATATTGTGC+AGG + chr4_2:70891452-70891471 Msa0619710:intron 35.0%
!!! TTTTGTTAGCTTTGCAGTGT+TGG + chr4_2:70891567-70891586 Msa0619710:intron 35.0%
GAAATGTATACTATCTTGGG+AGG + chr4_2:70892090-70892109 Msa0619710:intron 35.0%
GAATTTGTACCAAGCAATGA+AGG + chr4_2:70892148-70892167 Msa0619710:CDS 35.0%
CTATACTGTGATTGTCCAAA+AGG + chr4_2:70892174-70892193 Msa0619710:CDS 35.0%
ATGGTAAGAACAACTTTACC+AGG - chr4_2:70892259-70892278 None:intergenic 35.0%
AATCATCATGTTTGCACAAG+TGG + chr4_2:70892353-70892372 Msa0619710:three_prime_UTR 35.0%
! AGATCATTTGGTGGTAAAAG+TGG - chr4_2:70892431-70892450 None:intergenic 35.0%
ACTCTATTGATATGAACAGC+AGG - chr4_2:70892468-70892487 None:intergenic 35.0%
AGAAGTTAACTAAAGCAGGC+AGG + chr4_2:70889291-70889310 Msa0619710:five_prime_UTR 40.0%
GAATGATTGAAAGGAATGGC+CGG + chr4_2:70889336-70889355 Msa0619710:five_prime_UTR 40.0%
ATAACTGGGCAAATTATCGG+CGG - chr4_2:70889367-70889386 None:intergenic 40.0%
!! ATAGAGGTGATGGGTTTAAG+GGG - chr4_2:70889567-70889586 None:intergenic 40.0%
!! ACATGTGGTGTTGTTTGGTT+TGG - chr4_2:70889646-70889665 None:intergenic 40.0%
!! CAACAACATGTGGTGTTGTT+TGG - chr4_2:70889651-70889670 None:intergenic 40.0%
AACAACACCACATGTTGTTG+AGG + chr4_2:70889651-70889670 Msa0619710:CDS 40.0%
ACAACTTCCTCAACAACATG+TGG - chr4_2:70889661-70889680 None:intergenic 40.0%
!!! GTAGCTGTTTTTTCAGGTTG+GGG - chr4_2:70889703-70889722 None:intergenic 40.0%
!!! CGTAGCTGTTTTTTCAGGTT+GGG - chr4_2:70889704-70889723 None:intergenic 40.0%
!!! TCGTAGCTGTTTTTTCAGGT+TGG - chr4_2:70889705-70889724 None:intergenic 40.0%
!!! GGAATCGTAGCTGTTTTTTC+AGG - chr4_2:70889709-70889728 None:intergenic 40.0%
TCTTGTTGCTCTGACTCTAA+GGG - chr4_2:70889730-70889749 None:intergenic 40.0%
ATCTTGTTGCTCTGACTCTA+AGG - chr4_2:70889731-70889750 None:intergenic 40.0%
! GTTTTCTTCTCAGGTTCATC+AGG - chr4_2:70889760-70889779 None:intergenic 40.0%
!!! GTGATGTTGGTTTTCTTCTC+AGG - chr4_2:70889769-70889788 None:intergenic 40.0%
ATGAGTCTCAAGAGTGATGT+TGG - chr4_2:70889782-70889801 None:intergenic 40.0%
TGGAATATCAGAAGGTTTGG+TGG - chr4_2:70889851-70889870 None:intergenic 40.0%
! TTTTCTTGTGCAGGTTCTTC+TGG - chr4_2:70889991-70890010 None:intergenic 40.0%
AGAACCTGCACAAGAAAACA+AGG + chr4_2:70889993-70890012 Msa0619710:CDS 40.0%
AGAAGGAGATAAGAAGGAAG+AGG + chr4_2:70890053-70890072 Msa0619710:CDS 40.0%
TAAGAAGGAAGAGGAAGTGA+AGG + chr4_2:70890062-70890081 Msa0619710:CDS 40.0%
GTTTCAACTTTCTCTGCAAC+AGG - chr4_2:70890189-70890208 None:intergenic 40.0%
TAAATGGATACTTCCTCAGG+TGG - chr4_2:70890225-70890244 None:intergenic 40.0%
CCATAAATGGATACTTCCTC+AGG - chr4_2:70890228-70890247 None:intergenic 40.0%
!! CCTGAGGAAGTATCCATTTA+TGG + chr4_2:70890225-70890244 Msa0619710:CDS 40.0%
AAGGAGTGGTATCCCATAAA+TGG - chr4_2:70890241-70890260 None:intergenic 40.0%
AGGTGATGAATTGGAGAAAG+TGG + chr4_2:70890401-70890420 Msa0619710:CDS 40.0%
GAGAAAGTGGTTTACATGCA+TGG + chr4_2:70890414-70890433 Msa0619710:CDS 40.0%
TGTCTAAGTTCCCATTTACC+AGG - chr4_2:70890654-70890673 None:intergenic 40.0%
ACAAGCCCTTCAATTGTTTC+AGG + chr4_2:70890683-70890702 Msa0619710:CDS 40.0%
TACCTGTTTGGCCACAAATT+CGG - chr4_2:70890718-70890737 None:intergenic 40.0%
TGGTTCTCTGGGTAAGAAAA+GGG - chr4_2:70891039-70891058 None:intergenic 40.0%
! TTGGTTCTCTGGGTAAGAAA+AGG - chr4_2:70891040-70891059 None:intergenic 40.0%
!!! CAAACTTGCTTTTGGTTCTC+TGG - chr4_2:70891051-70891070 None:intergenic 40.0%
!! TACGGTGGATTGAGTAAAGA+TGG + chr4_2:70891233-70891252 Msa0619710:CDS 40.0%
CTGCTACTGAGATCACAATA+AGG + chr4_2:70891276-70891295 Msa0619710:CDS 40.0%
GAATTTCCTGTTACTGAGGT+TGG + chr4_2:70891320-70891339 Msa0619710:intron 40.0%
GAAAAACCAACCTCAGTAAC+AGG - chr4_2:70891329-70891348 None:intergenic 40.0%
GCATCCAAAGAATGCAACAT+AGG + chr4_2:70891360-70891379 Msa0619710:intron 40.0%
CATCAACATCATTAGGTGGT+TGG - chr4_2:70891850-70891869 None:intergenic 40.0%
GTATAGCTTCCTTCATTGCT+TGG - chr4_2:70892160-70892179 None:intergenic 40.0%
TGTCCAAAAGGCAAGAAAAG+TGG + chr4_2:70892186-70892205 Msa0619710:CDS 40.0%
!!! AAGCCACTTTTCTTGCCTTT+TGG - chr4_2:70892192-70892211 None:intergenic 40.0%
CCTAGAACTTGTGTTGTCAA+TGG - chr4_2:70892278-70892297 None:intergenic 40.0%
CCATTGACAACACAAGTTCT+AGG + chr4_2:70892275-70892294 Msa0619710:CDS 40.0%
! GTGAAGATTTGGTCTTCAAG+CGG - chr4_2:70892318-70892337 None:intergenic 40.0%
TCAGTCAGAGAGTGAAGATT+TGG - chr4_2:70892329-70892348 None:intergenic 40.0%
CAAATTATCGGCGGTATTGC+CGG - chr4_2:70889358-70889377 None:intergenic 45.0%
TAACATTGCATTGCAGACCC+TGG + chr4_2:70889447-70889466 Msa0619710:five_prime_UTR 45.0%
!! TTGGTTTGGAGAGTCATCGT+GGG - chr4_2:70889632-70889651 None:intergenic 45.0%
!! TTTGGTTTGGAGAGTCATCG+TGG - chr4_2:70889633-70889652 None:intergenic 45.0%
!!! TCGTCCTTGTTTTCTTGTGC+AGG - chr4_2:70890000-70890019 None:intergenic 45.0%
GTATCTTCTGTGGAGGATGA+TGG + chr4_2:70890093-70890112 Msa0619710:CDS 45.0%
!! GGATGATGGAGCAAAAACTG+TGG + chr4_2:70890107-70890126 Msa0619710:CDS 45.0%
TGATGGAGCAAAAACTGTGG+AGG + chr4_2:70890110-70890129 Msa0619710:CDS 45.0%
TTCTTGCTTTGCAGGAACAG+AGG - chr4_2:70890166-70890185 None:intergenic 45.0%
TTCATTGCCATTACCACCTG+AGG + chr4_2:70890209-70890228 Msa0619710:CDS 45.0%
GATACTTCCTCAGGTGGTAA+TGG - chr4_2:70890219-70890238 None:intergenic 45.0%
CTTCTTTCGTCTACAAGGAG+TGG - chr4_2:70890255-70890274 None:intergenic 45.0%
CGTCACTTCTTTCGTCTACA+AGG - chr4_2:70890260-70890279 None:intergenic 45.0%
CAATAGTGCATACACCACCA+TGG - chr4_2:70890599-70890618 None:intergenic 45.0%
ATTCTCCTGGACCTGGTAAA+TGG + chr4_2:70890640-70890659 Msa0619710:CDS 45.0%
TTCTCCTGGACCTGGTAAAT+GGG + chr4_2:70890641-70890660 Msa0619710:CDS 45.0%
GGACAATTACCCCGAATTTG+TGG + chr4_2:70890704-70890723 Msa0619710:CDS 45.0%
ACCTGTTTGGCCACAAATTC+GGG - chr4_2:70890717-70890736 None:intergenic 45.0%
AGGTGTTCATCAATGTGCCA+TGG + chr4_2:70890984-70891003 Msa0619710:intron 45.0%
TGTTCATCAATGTGCCATGG+TGG + chr4_2:70890987-70891006 Msa0619710:CDS 45.0%
CAAAAGGGTCTCAGTTGACT+TGG - chr4_2:70891089-70891108 None:intergenic 45.0%
! AGTCAACTGAGACCCTTTTG+AGG + chr4_2:70891089-70891108 Msa0619710:CDS 45.0%
TCAATCCACCGTACTTCACA+GGG - chr4_2:70891226-70891245 None:intergenic 45.0%
CTTCAAGCCTGCACAATATG+TGG - chr4_2:70891462-70891481 None:intergenic 45.0%
TCTTGGGAGGTGAGAGTAAT+AGG + chr4_2:70892103-70892122 Msa0619710:CDS 45.0%
CTTGGGAGGTGAGAGTAATA+GGG + chr4_2:70892104-70892123 Msa0619710:CDS 45.0%
GAGTAATAGGGTGGGAAGTA+AGG + chr4_2:70892116-70892135 Msa0619710:CDS 45.0%
ATAGGGTGGGAAGTAAGGTA+TGG + chr4_2:70892121-70892140 Msa0619710:CDS 45.0%
GGTTGGAAGTAGTAGGAAGG+TGG - chr4_2:70889475-70889494 None:intergenic 50.0%
! CCAGGTTGGAAGTAGTAGGA+AGG - chr4_2:70889478-70889497 None:intergenic 50.0%
CCTTCCTACTACTTCCAACC+TGG + chr4_2:70889475-70889494 Msa0619710:five_prime_UTR 50.0%
! CCAACCAGGTTGGAAGTAGT+AGG - chr4_2:70889482-70889501 None:intergenic 50.0%
CCTACTACTTCCAACCTGGT+TGG + chr4_2:70889479-70889498 Msa0619710:five_prime_UTR 50.0%
GTATGTTGTGCCAACCAGGT+TGG - chr4_2:70889492-70889511 None:intergenic 50.0%
GTGAGTATGTTGTGCCAACC+AGG - chr4_2:70889496-70889515 None:intergenic 50.0%
!! GGTGATGGGTTTAAGGGGAA+AGG - chr4_2:70889562-70889581 None:intergenic 50.0%
ATCGTGGGACATGTTGGAAG+AGG - chr4_2:70889617-70889636 None:intergenic 50.0%
AGAGTCATCGTGGGACATGT+TGG - chr4_2:70889623-70889642 None:intergenic 50.0%
TTGGTAGAGCAGAGAAGGCA+TGG - chr4_2:70889933-70889952 None:intergenic 50.0%
TTGTGCAGGTTCTTCTGGTG+GGG - chr4_2:70889986-70890005 None:intergenic 50.0%
CTTGTGCAGGTTCTTCTGGT+GGG - chr4_2:70889987-70890006 None:intergenic 50.0%
TCTTGTGCAGGTTCTTCTGG+TGG - chr4_2:70889988-70890007 None:intergenic 50.0%
GCAACAGGTTCTTGCTTTGC+AGG - chr4_2:70890174-70890193 None:intergenic 50.0%
CTTAAGGATTCTCCTGGACC+TGG + chr4_2:70890633-70890652 Msa0619710:CDS 50.0%
AGTTCCCATTTACCAGGTCC+AGG - chr4_2:70890648-70890667 None:intergenic 50.0%
CCTGTTTGGCCACAAATTCG+GGG - chr4_2:70890716-70890735 None:intergenic 50.0%
CAATGTGCCATGGTGGTACT+TGG + chr4_2:70890994-70891013 Msa0619710:CDS 50.0%
TTCACTGCCAAGTACCACCA+TGG - chr4_2:70891004-70891023 None:intergenic 50.0%
GGTGGTACTTGGCAGTGAAT+AGG + chr4_2:70891005-70891024 Msa0619710:CDS 50.0%
!! AGGGTCTCAGTTGACTTGGA+AGG - chr4_2:70891085-70891104 None:intergenic 50.0%
TACTTCACAGGGAGTTGCTC+TGG - chr4_2:70891215-70891234 None:intergenic 50.0%
GAGCAACTCCCTGTGAAGTA+CGG + chr4_2:70891215-70891234 Msa0619710:CDS 50.0%
CTCAATCCACCGTACTTCAC+AGG - chr4_2:70891227-70891246 None:intergenic 50.0%
! AGCTTTGCAGTGTTGGACTG+TGG + chr4_2:70891574-70891593 Msa0619710:intron 50.0%
GGAGGTGAGAGTAATAGGGT+GGG + chr4_2:70892108-70892127 Msa0619710:CDS 50.0%
GTAGTAGGAAGGTGGAGCCA+GGG - chr4_2:70889467-70889486 None:intergenic 55.0%
AGTAGTAGGAAGGTGGAGCC+AGG - chr4_2:70889468-70889487 None:intergenic 55.0%
CCCCGAATTTGTGGCCAAAC+AGG + chr4_2:70890713-70890732 Msa0619710:CDS 55.0%
CAACTCCCTGTGAAGTACGG+TGG + chr4_2:70891218-70891237 Msa0619710:CDS 55.0%
GGGAGGTGAGAGTAATAGGG+TGG + chr4_2:70892107-70892126 Msa0619710:CDS 55.0%
TGCAGGTTCTTCTGGTGGGG+TGG - chr4_2:70889983-70890002 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 70889276 70892539 70889276 ID=Msa0619710;Name=Msa0619710
chr4_2 mRNA 70889276 70892539 70889276 ID=Msa0619710-mRNA-1;Parent=Msa0619710;Name=Msa0619710-mRNA-1;_AED=0.02;_eAED=0.02;_QI=349|1|1|1|1|1|4|191|542
chr4_2 exon 70889276 70890734 70889276 ID=Msa0619710-mRNA-1:exon:20822;Parent=Msa0619710-mRNA-1
chr4_2 exon 70890986 70891110 70890986 ID=Msa0619710-mRNA-1:exon:20823;Parent=Msa0619710-mRNA-1
chr4_2 exon 70891202 70891337 70891202 ID=Msa0619710-mRNA-1:exon:20824;Parent=Msa0619710-mRNA-1
chr4_2 exon 70892091 70892539 70892091 ID=Msa0619710-mRNA-1:exon:20825;Parent=Msa0619710-mRNA-1
chr4_2 five_prime_UTR 70889276 70889624 70889276 ID=Msa0619710-mRNA-1:five_prime_utr;Parent=Msa0619710-mRNA-1
chr4_2 CDS 70889625 70890734 70889625 ID=Msa0619710-mRNA-1:cds;Parent=Msa0619710-mRNA-1
chr4_2 CDS 70890986 70891110 70890986 ID=Msa0619710-mRNA-1:cds;Parent=Msa0619710-mRNA-1
chr4_2 CDS 70891202 70891337 70891202 ID=Msa0619710-mRNA-1:cds;Parent=Msa0619710-mRNA-1
chr4_2 CDS 70892091 70892348 70892091 ID=Msa0619710-mRNA-1:cds;Parent=Msa0619710-mRNA-1
chr4_2 three_prime_UTR 70892349 70892539 70892349 ID=Msa0619710-mRNA-1:three_prime_utr;Parent=Msa0619710-mRNA-1
Gene Sequence

>Msa0619710

ATGTCCCACGATGACTCTCCAAACCAAACAACACCACATGTTGTTGAGGAAGTTGTTGTTACTCATGTAAATGTTCCCCAACCTGAAAAAACAGCTACGATTCCCTTAGAGTCAGAGCAACAAGATTCACACCCTGATGAACCTGAGAAGAAAACCAACATCACTCTTGAGACTCATCTCTCCAAATCTAATACCGAAGAAGAAACTTTCAACAAAGAACAAACCACCAAACCTTCTGATATTCCAAACAATGAAAACAAGTCACTCCAAGAGCTTAAAATTCTCATTCAACAAGCACTCAATAACCATGCCTTCTCTGCTCTACCAATAAAACAAGAAAAACAAGTTTCTGATGCCACCCCACCAGAAGAACCTGCACAAGAAAACAAGGACGATAAAGTTGCAACGAAGAAAGACGAAGAAAAGGAAGAAGGAGATAAGAAGGAAGAGGAAGTGAAGGAAAATGTAGTATCTTCTGTGGAGGATGATGGAGCAAAAACTGTGGAGGCTATTGAAGAAAGCGTTGTTGCGGTTTCTGCCTCTGTTCCTGCAAAGCAAGAACCTGTTGCAGAGAAAGTTGAAACTTCATTGCCATTACCACCTGAGGAAGTATCCATTTATGGGATACCACTCCTTGTAGACGAAAGAAGTGACGTAATTCTGTTGAAATTTCTACGTGCAAGAGATTTTAAGGTGAAAGAGGCTTTCACAATGATTAAGAACACGATTCTCTGGAGAAAAGAATTTGGAATAGAGGAGTTAATGGATGAGAAATTAGGTGATGAATTGGAGAAAGTGGTTTACATGCATGGATTTGATAAGGAAGGTCACCCTGTGTGTTATAACATATATGGTGAATTTCAGAACAAGGAATTGTACAAGAAAACTTTTTCTGATGAGGAGAAGAGACAAAATTTCCTTAAATGGAGAATTCAGTTCCTTGAGAAGAGTATTAGGAACTTGGATTTTAACCATGGTGGTGTATGCACTATTGTTCATGTCAATGATCTTAAGGATTCTCCTGGACCTGGTAAATGGGAACTTAGACAAGCTACCAAACAAGCCCTTCAATTGTTTCAGGACAATTACCCCGAATTTGTGGCCAAACAGGTGTTCATCAATGTGCCATGGTGGTACTTGGCAGTGAATAGGATGATAAGCCCTTTTCTTACCCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAGTCAACTGAGACCCTTTTGAGCTACATAGCTCCAGAGCAACTCCCTGTGAAGTACGGTGGATTGAGTAAAGATGGTGAATTTGGAAATTCAGATTCTGCTACTGAGATCACAATAAGGCCAGCATCAAAACATACTGTAGAATTTCCTGTTACTGAGAAATGTATACTATCTTGGGAGGTGAGAGTAATAGGGTGGGAAGTAAGGTATGGTGCAGAATTTGTACCAAGCAATGAAGGAAGCTATACTGTGATTGTCCAAAAGGCAAGAAAAGTGGCTTCATCAGAAGAAGCAGTGCTTTGCAACAGTTTCAAAATTAGTGAACCTGGTAAAGTTGTTCTTACCATTGACAACACAAGTTCTAGGAAGAAAAAGCTCTTGTACCGCTTGAAGACCAAATCTTCACTCTCTGACTGA

Protein sequence

>Msa0619710

MSHDDSPNQTTPHVVEEVVVTHVNVPQPEKTATIPLESEQQDSHPDEPEKKTNITLETHLSKSNTEEETFNKEQTTKPSDIPNNENKSLQELKILIQQALNNHAFSALPIKQEKQVSDATPPEEPAQENKDDKVATKKDEEKEEGDKKEEEVKENVVSSVEDDGAKTVEAIEESVVAVSASVPAKQEPVAEKVETSLPLPPEEVSIYGIPLLVDERSDVILLKFLRARDFKVKEAFTMIKNTILWRKEFGIEELMDEKLGDELEKVVYMHGFDKEGHPVCYNIYGEFQNKELYKKTFSDEEKRQNFLKWRIQFLEKSIRNLDFNHGGVCTIVHVNDLKDSPGPGKWELRQATKQALQLFQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSTETLLSYIAPEQLPVKYGGLSKDGEFGNSDSATEITIRPASKHTVEFPVTEKCILSWEVRVIGWEVRYGAEFVPSNEGSYTVIVQKARKVASSEEAVLCNSFKISEPGKVVLTIDNTSSRKKKLLYRLKTKSSLSD*