AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1373560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373560 MtrunA17_Chr4g0065041 96.400 250 7 1 1 248 3 252 0.0 499
Msa1373560 MtrunA17_Chr2g0297251 47.737 243 106 6 5 247 36 257 1.75e-64 201
Msa1373560 MtrunA17_Chr7g0230511 41.434 251 131 6 3 247 6 246 9.78e-60 189
Msa1373560 MtrunA17_Chr4g0040071 34.156 243 110 5 6 247 15 208 4.04e-40 137
Msa1373560 MtrunA17_Chr5g0395181 45.926 135 72 1 6 139 21 155 2.26e-39 135
Msa1373560 MtrunA17_Chr8g0366581 48.462 130 66 1 3 131 30 159 1.82e-38 134
Msa1373560 MtrunA17_Chr5g0411151 45.652 138 74 1 3 139 32 169 5.18e-37 130
Msa1373560 MtrunA17_Chr7g0265291 42.647 136 74 1 6 137 7 142 3.62e-33 119
Msa1373560 MtrunA17_Chr1g0179781 42.188 128 72 2 6 131 7 134 1.70e-29 110
Msa1373560 MtrunA17_Chr4g0052451 58.333 84 29 1 56 133 10 93 1.42e-28 104
Msa1373560 MtrunA17_Chr2g0320561 39.007 141 76 4 6 136 5 145 1.34e-24 98.2
Msa1373560 MtrunA17_Chr4g0052461 66.667 57 19 0 3 59 19 75 6.80e-23 89.0
Msa1373560 MtrunA17_Chr2g0320521 37.857 140 76 4 8 136 8 147 5.01e-21 88.2
Msa1373560 MtrunA17_Chr8g0392151 33.793 145 74 3 8 131 15 158 5.93e-21 88.2
Msa1373560 MtrunA17_Chr2g0320551 34.783 138 80 4 6 133 5 142 4.28e-20 84.3
Msa1373560 MtrunA17_Chr4g0020811 37.410 139 70 5 8 132 8 143 3.56e-19 81.6
Msa1373560 MtrunA17_Chr2g0308401 38.129 139 69 6 8 132 6 141 1.15e-18 80.1
Msa1373560 MtrunA17_Chr8g0386511 33.929 112 66 2 34 143 2 107 1.23e-14 69.3
Msa1373560 MtrunA17_Chr1g0161601 42.857 84 46 2 1 84 43 124 1.28e-12 63.5
Msa1373560 MtrunA17_Chr5g0434331 31.868 91 59 2 5 93 42 131 9.77e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373560 AT2G12646.1 66.667 258 74 5 1 248 1 256 2.19e-117 336
Msa1373560 AT2G12646.2 66.667 258 74 5 1 248 1 256 2.19e-117 336
Msa1373560 AT2G12646.3 66.535 254 73 5 5 248 2 253 5.19e-115 330
Msa1373560 AT3G60670.1 45.455 253 112 4 6 247 7 244 3.66e-72 221
Msa1373560 AT1G31040.1 46.311 244 111 6 5 247 18 242 2.80e-61 193
Msa1373560 AT4G17900.1 32.669 251 108 5 3 247 31 226 7.11e-37 130
Msa1373560 AT4G17900.2 32.669 251 108 5 3 247 17 212 8.82e-37 129
Msa1373560 AT1G32700.1 48.485 132 67 1 6 136 12 143 1.08e-36 129
Msa1373560 AT1G76590.1 32.922 243 147 3 6 247 18 245 3.74e-35 126
Msa1373560 AT1G21000.2 34.375 256 129 6 6 247 13 243 6.67e-35 125
Msa1373560 AT1G21000.1 34.375 256 129 6 6 247 16 246 7.58e-35 125
Msa1373560 AT1G43000.2 43.077 130 73 1 6 134 16 145 1.11e-32 119
Msa1373560 AT1G43000.1 43.077 130 73 1 6 134 9 138 1.35e-32 118
Msa1373560 AT5G46710.2 41.985 131 74 2 3 131 25 155 6.22e-30 110
Msa1373560 AT5G46710.3 41.985 131 74 2 3 131 9 139 7.10e-30 111
Msa1373560 AT5G46710.1 41.985 131 74 2 3 131 25 155 9.55e-30 111
Msa1373560 AT2G01818.1 39.860 143 76 3 7 139 12 154 1.45e-28 108
Msa1373560 AT2G27930.3 41.844 141 71 3 4 133 2 142 3.26e-28 105
Msa1373560 AT2G27930.2 41.844 141 71 3 4 133 2 142 3.26e-28 105
Msa1373560 AT2G27930.1 41.429 140 71 3 4 132 2 141 8.30e-28 105
Msa1373560 AT2G27930.4 41.429 140 71 3 4 132 2 141 8.30e-28 105
Msa1373560 AT1G32700.2 49.020 102 51 1 36 136 3 104 2.40e-26 101
Msa1373560 AT2G27930.5 44.186 86 39 1 56 132 59 144 3.99e-17 77.4
Msa1373560 AT2G27930.6 44.186 86 39 1 56 132 59 144 3.99e-17 77.4
Msa1373560 AT2G01818.2 36.471 85 48 2 61 139 6 90 2.43e-12 63.5

Find 53 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTTATTGCTATTATTAT+TGG 0.112766 tig0019439:+104513 None:intergenic
CCAAGAGAGCAATGGATAAA+AGG 0.296836 tig0019439:+105318 None:intergenic
CTTCCAACCATGCAGGCTTT+TGG 0.312977 tig0019439:+105844 None:intergenic
TATACAGAAAAGTTCTTTGT+TGG 0.345795 tig0019439:-105816 Msa1373560:CDS
AAGACCTTTCACCCTACTTA+AGG 0.378382 tig0019439:-104750 Msa1373560:CDS
GATCCAATGAGTTCATATTC+AGG 0.387250 tig0019439:-104631 Msa1373560:CDS
TAAAGTTTCTGATGAAGATA+TGG 0.401550 tig0019439:-104497 Msa1373560:CDS
GATAGTCAGGACTTAATTGT+AGG 0.404339 tig0019439:+104716 None:intergenic
AGCAATGGATAAAAGGTTCT+TGG 0.405041 tig0019439:+105325 None:intergenic
TTATCATGATGTTCTTAGAT+TGG 0.410755 tig0019439:-105664 Msa1373560:CDS
TTCCTGATCCTTTGAATTGG+CGG 0.427487 tig0019439:+105376 None:intergenic
TGGCATGCACAGAAATTGTT+AGG 0.429624 tig0019439:-104579 Msa1373560:CDS
TCATATTCAGGATCATCATC+AGG 0.433500 tig0019439:-104619 Msa1373560:CDS
TCTTGTGGAATTAGATAGTC+AGG 0.440473 tig0019439:+104703 None:intergenic
AGTTTCCTGATCCTTTGAAT+TGG 0.442272 tig0019439:+105373 None:intergenic
AGTATGATTAGTAGAAGAAA+AGG 0.445334 tig0019439:-104469 Msa1373560:CDS
AAGTATGTGTGCAAAATTCA+TGG 0.453257 tig0019439:-104536 Msa1373560:CDS
CTTCTTGATGAACACCACTT+TGG 0.453482 tig0019439:+105410 None:intergenic
TTTGGCACTATTGATAGTAT+AGG 0.459040 tig0019439:+105428 None:intergenic
AACCGCCAATTCAAAGGATC+AGG 0.462617 tig0019439:-105378 Msa1373560:CDS
GATCCTGAATATGAACTCAT+TGG 0.472047 tig0019439:+104628 None:intergenic
AAACCAAAAGCCTGCATGGT+TGG 0.480103 tig0019439:-105847 Msa1373560:CDS
GGTCTTGCATATCCTTAAGT+AGG 0.485067 tig0019439:+104738 None:intergenic
ATTGTTAGGAAGAGAAGAAG+TGG 0.501836 tig0019439:-104565 Msa1373560:CDS
CCATTGCTCTCTTGGATGCA+AGG 0.504085 tig0019439:-105310 Msa1373560:intron
CTATCTAATTCCACAAGAGA+TGG 0.516025 tig0019439:-104698 Msa1373560:CDS
TATCTAATTCCACAAGAGAT+GGG 0.519713 tig0019439:-104697 Msa1373560:CDS
AATGACAAGGTCAACAATTG+TGG 0.532726 tig0019439:-104662 Msa1373560:CDS
CCTCAAAACCGCCAATTCAA+AGG 0.532742 tig0019439:-105384 Msa1373560:CDS
GTCTTGCATATCCTTAAGTA+GGG 0.540564 tig0019439:+104739 None:intergenic
AGGCGGTGGTAGCGATGAGA+TGG 0.543611 tig0019439:+105708 None:intergenic
AATGGATAAAAGGTTCTTGG+AGG 0.548499 tig0019439:+105328 None:intergenic
ATAGTCAGGACTTAATTGTA+GGG 0.550330 tig0019439:+104717 None:intergenic
TAAAGAGCTTCCAACCATGC+AGG 0.552228 tig0019439:+105837 None:intergenic
TAACAAAGAGGAGATCTATG+AGG 0.552341 tig0019439:+104442 None:intergenic
TATAGACTGCACCAATGTCC+AGG 0.557416 tig0019439:-105625 Msa1373560:intron
TACTATCAATAGTGCCAAAG+TGG 0.558364 tig0019439:-105424 Msa1373560:CDS
ATCTAATTCCACAAGAGATG+GGG 0.572263 tig0019439:-104696 Msa1373560:CDS
TTAGGAAGAGAAGAAGTGGA+TGG 0.575841 tig0019439:-104561 Msa1373560:CDS
AGGGAAACCAAAAGCCTGCA+TGG 0.579853 tig0019439:-105851 Msa1373560:CDS
CATAACGACGAACTTGAAGA+AGG 0.581891 tig0019439:+105688 None:intergenic
AACAAAGAGGAGATCTATGA+GGG 0.605762 tig0019439:+104443 None:intergenic
GCTAACACTAATTAACAAAG+AGG 0.610407 tig0019439:+104430 None:intergenic
ATATCCTTAAGTAGGGTGAA+AGG 0.612227 tig0019439:+104746 None:intergenic
CCTTGCATCCAAGAGAGCAA+TGG 0.619111 tig0019439:+105310 None:intergenic
CGATGAGATGGAAAGCAATG+AGG 0.624526 tig0019439:+105720 None:intergenic
CATATTCAGGATCATCATCA+GGG 0.632732 tig0019439:-104618 Msa1373560:CDS
AGGGTCAGAGAATATGAGCA+TGG 0.657131 tig0019439:-104599 Msa1373560:CDS
TCTAATTCCACAAGAGATGG+GGG 0.658047 tig0019439:-104695 Msa1373560:CDS
GACGAACTTGAAGAAGGCGG+TGG 0.658588 tig0019439:+105694 None:intergenic
ATGTATATGTACCTGGACAT+TGG 0.663071 tig0019439:+105614 None:intergenic
GGGATGAATTAGAAATGACA+AGG 0.706223 tig0019439:-104675 Msa1373560:CDS
AACGACGAACTTGAAGAAGG+CGG 0.734968 tig0019439:+105691 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTATACATAGTATTA+TGG - tig0019439:105121-105140 Msa1373560:intron 10.0%
!! CATAAAAAATACTAAAAAAA+AGG + tig0019439:105188-105207 None:intergenic 10.0%
!!! CTTTTTTTTAGTATTTTTTA+TGG - tig0019439:105186-105205 Msa1373560:intron 10.0%
!! ATTAATTATACATAGTATTA+TGG - tig0019439:105121-105140 Msa1373560:intron 10.0%
!! CATAAAAAATACTAAAAAAA+AGG + tig0019439:105188-105207 None:intergenic 10.0%
!!! CTTTTTTTTAGTATTTTTTA+TGG - tig0019439:105186-105205 Msa1373560:intron 10.0%
!! TCAAAATTCTTATATATTGA+TGG - tig0019439:104483-104502 Msa1373560:CDS 15.0%
!! TTGGTTAAAATGATTTAATT+TGG - tig0019439:104514-104533 Msa1373560:CDS 15.0%
!!! AATTTGGTAATTGTTAATAT+AGG - tig0019439:104530-104549 Msa1373560:CDS 15.0%
!!! ATTTGGTAATTGTTAATATA+GGG - tig0019439:104531-104550 Msa1373560:CDS 15.0%
!! TGAATTACATAAGATTTAAT+TGG + tig0019439:104895-104914 None:intergenic 15.0%
!!! TTTTAATTTCTGATTGAAAA+AGG - tig0019439:104927-104946 Msa1373560:intron 15.0%
!!! TACATATTTTTTTTATGAGA+AGG + tig0019439:105410-105429 None:intergenic 15.0%
!!! AACTTTATTGCTATTATTAT+TGG + tig0019439:105891-105910 None:intergenic 15.0%
!! TCAAAATTCTTATATATTGA+TGG - tig0019439:104483-104502 Msa1373560:CDS 15.0%
!! TTGGTTAAAATGATTTAATT+TGG - tig0019439:104514-104533 Msa1373560:CDS 15.0%
!!! AATTTGGTAATTGTTAATAT+AGG - tig0019439:104530-104549 Msa1373560:CDS 15.0%
!!! ATTTGGTAATTGTTAATATA+GGG - tig0019439:104531-104550 Msa1373560:CDS 15.0%
!! TGAATTACATAAGATTTAAT+TGG + tig0019439:104895-104914 None:intergenic 15.0%
!!! TTTTAATTTCTGATTGAAAA+AGG - tig0019439:104927-104946 Msa1373560:intron 15.0%
!!! TACATATTTTTTTTATGAGA+AGG + tig0019439:105410-105429 None:intergenic 15.0%
!!! AACTTTATTGCTATTATTAT+TGG + tig0019439:105891-105910 None:intergenic 15.0%
!! AAAAGACTTAAGAAAACAAA+GGG + tig0019439:104459-104478 None:intergenic 20.0%
!! AAAAAGACTTAAGAAAACAA+AGG + tig0019439:104460-104479 None:intergenic 20.0%
!! AAATCTTATGTAATTCAACA+TGG - tig0019439:104898-104917 Msa1373560:intron 20.0%
!! ATGGTTTATACATAGAATTA+TGG - tig0019439:105140-105159 Msa1373560:intron 20.0%
!! AACTCATTGAATTAAATGAT+TGG - tig0019439:105236-105255 Msa1373560:intron 20.0%
!! ATGAGCATAAATGAATTTAA+TGG + tig0019439:105478-105497 None:intergenic 20.0%
!!! ATATGCTTAATTTGATCATA+TGG - tig0019439:105588-105607 Msa1373560:intron 20.0%
!! AAAAGACTTAAGAAAACAAA+GGG + tig0019439:104459-104478 None:intergenic 20.0%
!! AAAAAGACTTAAGAAAACAA+AGG + tig0019439:104460-104479 None:intergenic 20.0%
!! AAATCTTATGTAATTCAACA+TGG - tig0019439:104898-104917 Msa1373560:intron 20.0%
!! ATGGTTTATACATAGAATTA+TGG - tig0019439:105140-105159 Msa1373560:intron 20.0%
!! AACTCATTGAATTAAATGAT+TGG - tig0019439:105236-105255 Msa1373560:intron 20.0%
!! ATGAGCATAAATGAATTTAA+TGG + tig0019439:105478-105497 None:intergenic 20.0%
!!! ATATGCTTAATTTGATCATA+TGG - tig0019439:105588-105607 Msa1373560:intron 20.0%
!!! TATATTGATGGCTACAATTT+TGG - tig0019439:104495-104514 Msa1373560:CDS 25.0%
! TATACAGAAAAGTTCTTTGT+TGG - tig0019439:104585-104604 Msa1373560:CDS 25.0%
! TTATCATGATGTTCTTAGAT+TGG - tig0019439:104737-104756 Msa1373560:CDS 25.0%
!! TTTGAATTATGTTGTTTACC+AGG - tig0019439:104950-104969 Msa1373560:intron 25.0%
! AATTGAGCACATATATTGAT+TGG - tig0019439:105303-105322 Msa1373560:intron 25.0%
!!! ACAATTTTTTGCACAAGATA+TGG - tig0019439:105528-105547 Msa1373560:intron 25.0%
!!! CAATTTTTTGCACAAGATAT+GGG - tig0019439:105529-105548 Msa1373560:intron 25.0%
! CATATGGAGTATATATTTGT+AGG - tig0019439:105604-105623 Msa1373560:intron 25.0%
! TAAAGTTTCTGATGAAGATA+TGG - tig0019439:105904-105923 Msa1373560:intron 25.0%
!! TTTTCTTCTACTAATCATAC+TGG + tig0019439:105933-105952 None:intergenic 25.0%
! AGTATGATTAGTAGAAGAAA+AGG - tig0019439:105932-105951 Msa1373560:intron 25.0%
!!! TATATTGATGGCTACAATTT+TGG - tig0019439:104495-104514 Msa1373560:CDS 25.0%
! TATACAGAAAAGTTCTTTGT+TGG - tig0019439:104585-104604 Msa1373560:CDS 25.0%
! TTATCATGATGTTCTTAGAT+TGG - tig0019439:104737-104756 Msa1373560:CDS 25.0%
!! TTTGAATTATGTTGTTTACC+AGG - tig0019439:104950-104969 Msa1373560:intron 25.0%
! AATTGAGCACATATATTGAT+TGG - tig0019439:105303-105322 Msa1373560:intron 25.0%
!!! ACAATTTTTTGCACAAGATA+TGG - tig0019439:105528-105547 Msa1373560:intron 25.0%
!!! CAATTTTTTGCACAAGATAT+GGG - tig0019439:105529-105548 Msa1373560:intron 25.0%
! CATATGGAGTATATATTTGT+AGG - tig0019439:105604-105623 Msa1373560:intron 25.0%
! TAAAGTTTCTGATGAAGATA+TGG - tig0019439:105904-105923 Msa1373560:intron 25.0%
!! TTTTCTTCTACTAATCATAC+TGG + tig0019439:105933-105952 None:intergenic 25.0%
! AGTATGATTAGTAGAAGAAA+AGG - tig0019439:105932-105951 Msa1373560:intron 25.0%
!!! CATTCTTTTTTGCATTCTCA+TGG + tig0019439:104620-104639 None:intergenic 30.0%
ATTGAACATGTATATGTACC+TGG + tig0019439:104797-104816 None:intergenic 30.0%
! TTTGGCACTATTGATAGTAT+AGG + tig0019439:104976-104995 None:intergenic 30.0%
TATGTGACCGTTATAAATCA+AGG - tig0019439:105367-105386 Msa1373560:CDS 30.0%
ATGTGACCGTTATAAATCAA+GGG - tig0019439:105368-105387 Msa1373560:CDS 30.0%
ATGGAGTATATATTTGTAGG+TGG - tig0019439:105607-105626 Msa1373560:intron 30.0%
ATAGTCAGGACTTAATTGTA+GGG + tig0019439:105687-105706 None:intergenic 30.0%
TATCTAATTCCACAAGAGAT+GGG - tig0019439:105704-105723 Msa1373560:CDS 30.0%
AAGTATGTGTGCAAAATTCA+TGG - tig0019439:105865-105884 Msa1373560:intron 30.0%
!!! CATTCTTTTTTGCATTCTCA+TGG + tig0019439:104620-104639 None:intergenic 30.0%
ATTGAACATGTATATGTACC+TGG + tig0019439:104797-104816 None:intergenic 30.0%
! TTTGGCACTATTGATAGTAT+AGG + tig0019439:104976-104995 None:intergenic 30.0%
TATGTGACCGTTATAAATCA+AGG - tig0019439:105367-105386 Msa1373560:CDS 30.0%
ATGTGACCGTTATAAATCAA+GGG - tig0019439:105368-105387 Msa1373560:CDS 30.0%
ATGGAGTATATATTTGTAGG+TGG - tig0019439:105607-105626 Msa1373560:intron 30.0%
ATAGTCAGGACTTAATTGTA+GGG + tig0019439:105687-105706 None:intergenic 30.0%
TATCTAATTCCACAAGAGAT+GGG - tig0019439:105704-105723 Msa1373560:CDS 30.0%
AAGTATGTGTGCAAAATTCA+TGG - tig0019439:105865-105884 Msa1373560:intron 30.0%
ATGTATATGTACCTGGACAT+TGG + tig0019439:104790-104809 None:intergenic 35.0%
TACTATCAATAGTGCCAAAG+TGG - tig0019439:104977-104996 Msa1373560:intron 35.0%
AGTTTCCTGATCCTTTGAAT+TGG + tig0019439:105031-105050 None:intergenic 35.0%
AATGGATAAAAGGTTCTTGG+AGG + tig0019439:105076-105095 None:intergenic 35.0%
AGCAATGGATAAAAGGTTCT+TGG + tig0019439:105079-105098 None:intergenic 35.0%
CGGTATCCCTTGATTTATAA+CGG + tig0019439:105377-105396 None:intergenic 35.0%
TATGAGAAGGAAACTGAACT+CGG + tig0019439:105397-105416 None:intergenic 35.0%
ATATCCTTAAGTAGGGTGAA+AGG + tig0019439:105658-105677 None:intergenic 35.0%
GTCTTGCATATCCTTAAGTA+GGG + tig0019439:105665-105684 None:intergenic 35.0%
GATAGTCAGGACTTAATTGT+AGG + tig0019439:105688-105707 None:intergenic 35.0%
TCTTGTGGAATTAGATAGTC+AGG + tig0019439:105701-105720 None:intergenic 35.0%
CTATCTAATTCCACAAGAGA+TGG - tig0019439:105703-105722 Msa1373560:CDS 35.0%
ATCTAATTCCACAAGAGATG+GGG - tig0019439:105705-105724 Msa1373560:CDS 35.0%
GGGATGAATTAGAAATGACA+AGG - tig0019439:105726-105745 Msa1373560:CDS 35.0%
AATGACAAGGTCAACAATTG+TGG - tig0019439:105739-105758 Msa1373560:CDS 35.0%
GATCCAATGAGTTCATATTC+AGG - tig0019439:105770-105789 Msa1373560:CDS 35.0%
GATCCTGAATATGAACTCAT+TGG + tig0019439:105776-105795 None:intergenic 35.0%
TCATATTCAGGATCATCATC+AGG - tig0019439:105782-105801 Msa1373560:CDS 35.0%
CATATTCAGGATCATCATCA+GGG - tig0019439:105783-105802 Msa1373560:CDS 35.0%
ATTGTTAGGAAGAGAAGAAG+TGG - tig0019439:105836-105855 Msa1373560:CDS 35.0%
AACAAAGAGGAGATCTATGA+GGG + tig0019439:105961-105980 None:intergenic 35.0%
TAACAAAGAGGAGATCTATG+AGG + tig0019439:105962-105981 None:intergenic 35.0%
ATGTATATGTACCTGGACAT+TGG + tig0019439:104790-104809 None:intergenic 35.0%
TACTATCAATAGTGCCAAAG+TGG - tig0019439:104977-104996 Msa1373560:intron 35.0%
AGTTTCCTGATCCTTTGAAT+TGG + tig0019439:105031-105050 None:intergenic 35.0%
AATGGATAAAAGGTTCTTGG+AGG + tig0019439:105076-105095 None:intergenic 35.0%
AGCAATGGATAAAAGGTTCT+TGG + tig0019439:105079-105098 None:intergenic 35.0%
CGGTATCCCTTGATTTATAA+CGG + tig0019439:105377-105396 None:intergenic 35.0%
TATGAGAAGGAAACTGAACT+CGG + tig0019439:105397-105416 None:intergenic 35.0%
ATATCCTTAAGTAGGGTGAA+AGG + tig0019439:105658-105677 None:intergenic 35.0%
GTCTTGCATATCCTTAAGTA+GGG + tig0019439:105665-105684 None:intergenic 35.0%
GATAGTCAGGACTTAATTGT+AGG + tig0019439:105688-105707 None:intergenic 35.0%
TCTTGTGGAATTAGATAGTC+AGG + tig0019439:105701-105720 None:intergenic 35.0%
CTATCTAATTCCACAAGAGA+TGG - tig0019439:105703-105722 Msa1373560:CDS 35.0%
ATCTAATTCCACAAGAGATG+GGG - tig0019439:105705-105724 Msa1373560:CDS 35.0%
GGGATGAATTAGAAATGACA+AGG - tig0019439:105726-105745 Msa1373560:CDS 35.0%
AATGACAAGGTCAACAATTG+TGG - tig0019439:105739-105758 Msa1373560:CDS 35.0%
GATCCAATGAGTTCATATTC+AGG - tig0019439:105770-105789 Msa1373560:CDS 35.0%
GATCCTGAATATGAACTCAT+TGG + tig0019439:105776-105795 None:intergenic 35.0%
TCATATTCAGGATCATCATC+AGG - tig0019439:105782-105801 Msa1373560:CDS 35.0%
CATATTCAGGATCATCATCA+GGG - tig0019439:105783-105802 Msa1373560:CDS 35.0%
ATTGTTAGGAAGAGAAGAAG+TGG - tig0019439:105836-105855 Msa1373560:CDS 35.0%
AACAAAGAGGAGATCTATGA+GGG + tig0019439:105961-105980 None:intergenic 35.0%
TAACAAAGAGGAGATCTATG+AGG + tig0019439:105962-105981 None:intergenic 35.0%
CATAACGACGAACTTGAAGA+AGG + tig0019439:104716-104735 None:intergenic 40.0%
! CACTATTGATAGTATAGGCC+TGG + tig0019439:104971-104990 None:intergenic 40.0%
CTTCTTGATGAACACCACTT+TGG + tig0019439:104994-105013 None:intergenic 40.0%
TTCCTGATCCTTTGAATTGG+CGG + tig0019439:105028-105047 None:intergenic 40.0%
CCAAGAGAGCAATGGATAAA+AGG + tig0019439:105086-105105 None:intergenic 40.0%
! CCTTTTATCCATTGCTCTCT+TGG - tig0019439:105083-105102 Msa1373560:intron 40.0%
AAGACCTTTCACCCTACTTA+AGG - tig0019439:105651-105670 Msa1373560:CDS 40.0%
GGTCTTGCATATCCTTAAGT+AGG + tig0019439:105666-105685 None:intergenic 40.0%
TCTAATTCCACAAGAGATGG+GGG - tig0019439:105706-105725 Msa1373560:CDS 40.0%
TGGCATGCACAGAAATTGTT+AGG - tig0019439:105822-105841 Msa1373560:CDS 40.0%
TTAGGAAGAGAAGAAGTGGA+TGG - tig0019439:105840-105859 Msa1373560:CDS 40.0%
CATAACGACGAACTTGAAGA+AGG + tig0019439:104716-104735 None:intergenic 40.0%
! CACTATTGATAGTATAGGCC+TGG + tig0019439:104971-104990 None:intergenic 40.0%
CTTCTTGATGAACACCACTT+TGG + tig0019439:104994-105013 None:intergenic 40.0%
TTCCTGATCCTTTGAATTGG+CGG + tig0019439:105028-105047 None:intergenic 40.0%
CCAAGAGAGCAATGGATAAA+AGG + tig0019439:105086-105105 None:intergenic 40.0%
! CCTTTTATCCATTGCTCTCT+TGG - tig0019439:105083-105102 Msa1373560:intron 40.0%
AAGACCTTTCACCCTACTTA+AGG - tig0019439:105651-105670 Msa1373560:CDS 40.0%
GGTCTTGCATATCCTTAAGT+AGG + tig0019439:105666-105685 None:intergenic 40.0%
TCTAATTCCACAAGAGATGG+GGG - tig0019439:105706-105725 Msa1373560:CDS 40.0%
TGGCATGCACAGAAATTGTT+AGG - tig0019439:105822-105841 Msa1373560:CDS 40.0%
TTAGGAAGAGAAGAAGTGGA+TGG - tig0019439:105840-105859 Msa1373560:CDS 40.0%
AAACCAAAAGCCTGCATGGT+TGG - tig0019439:104554-104573 Msa1373560:CDS 45.0%
TAAAGAGCTTCCAACCATGC+AGG + tig0019439:104567-104586 None:intergenic 45.0%
CGATGAGATGGAAAGCAATG+AGG + tig0019439:104684-104703 None:intergenic 45.0%
AACGACGAACTTGAAGAAGG+CGG + tig0019439:104713-104732 None:intergenic 45.0%
TATAGACTGCACCAATGTCC+AGG - tig0019439:104776-104795 Msa1373560:CDS 45.0%
! CCTTTGAATTGGCGGTTTTG+AGG + tig0019439:105020-105039 None:intergenic 45.0%
CCTCAAAACCGCCAATTCAA+AGG - tig0019439:105017-105036 Msa1373560:intron 45.0%
AACCGCCAATTCAAAGGATC+AGG - tig0019439:105023-105042 Msa1373560:intron 45.0%
AATTCATCCCCCATCTCTTG+TGG + tig0019439:105716-105735 None:intergenic 45.0%
AGGGTCAGAGAATATGAGCA+TGG - tig0019439:105802-105821 Msa1373560:CDS 45.0%
AAACCAAAAGCCTGCATGGT+TGG - tig0019439:104554-104573 Msa1373560:CDS 45.0%
TAAAGAGCTTCCAACCATGC+AGG + tig0019439:104567-104586 None:intergenic 45.0%
CGATGAGATGGAAAGCAATG+AGG + tig0019439:104684-104703 None:intergenic 45.0%
AACGACGAACTTGAAGAAGG+CGG + tig0019439:104713-104732 None:intergenic 45.0%
TATAGACTGCACCAATGTCC+AGG - tig0019439:104776-104795 Msa1373560:CDS 45.0%
! CCTTTGAATTGGCGGTTTTG+AGG + tig0019439:105020-105039 None:intergenic 45.0%
CCTCAAAACCGCCAATTCAA+AGG - tig0019439:105017-105036 Msa1373560:intron 45.0%
AACCGCCAATTCAAAGGATC+AGG - tig0019439:105023-105042 Msa1373560:intron 45.0%
AATTCATCCCCCATCTCTTG+TGG + tig0019439:105716-105735 None:intergenic 45.0%
AGGGTCAGAGAATATGAGCA+TGG - tig0019439:105802-105821 Msa1373560:CDS 45.0%
!! TGAATTTAATTATATAAAAA+AGG - tig0019439:105432-105451 Msa1373560:CDS 5.0%
!! TGAATTTAATTATATAAAAA+AGG - tig0019439:105432-105451 Msa1373560:CDS 5.0%
AGGGAAACCAAAAGCCTGCA+TGG - tig0019439:104550-104569 Msa1373560:CDS 50.0%
! CTTCCAACCATGCAGGCTTT+TGG + tig0019439:104560-104579 None:intergenic 50.0%
CCTTGCATCCAAGAGAGCAA+TGG + tig0019439:105094-105113 None:intergenic 50.0%
CCATTGCTCTCTTGGATGCA+AGG - tig0019439:105091-105110 Msa1373560:intron 50.0%
AGGGAAACCAAAAGCCTGCA+TGG - tig0019439:104550-104569 Msa1373560:CDS 50.0%
! CTTCCAACCATGCAGGCTTT+TGG + tig0019439:104560-104579 None:intergenic 50.0%
CCTTGCATCCAAGAGAGCAA+TGG + tig0019439:105094-105113 None:intergenic 50.0%
CCATTGCTCTCTTGGATGCA+AGG - tig0019439:105091-105110 Msa1373560:intron 50.0%
GACGAACTTGAAGAAGGCGG+TGG + tig0019439:104710-104729 None:intergenic 55.0%
GACGAACTTGAAGAAGGCGG+TGG + tig0019439:104710-104729 None:intergenic 55.0%
! AGGCGGTGGTAGCGATGAGA+TGG + tig0019439:104696-104715 None:intergenic 60.0%
! AGGCGGTGGTAGCGATGAGA+TGG + tig0019439:104696-104715 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0019439 gene 104441 105982 104441 ID=Msa1373560;Name=Msa1373560
tig0019439 mRNA 104441 105982 104441 ID=Msa1373560-mRNA-1;Parent=Msa1373560;Name=Msa1373560-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.75|1|1|4|0|248
tig0019439 exon 105980 105982 105980 ID=Msa1373560-mRNA-1:exon:3377;Parent=Msa1373560-mRNA-1
tig0019439 exon 105626 105871 105626 ID=Msa1373560-mRNA-1:exon:3376;Parent=Msa1373560-mRNA-1
tig0019439 exon 105311 105451 105311 ID=Msa1373560-mRNA-1:exon:3375;Parent=Msa1373560-mRNA-1
tig0019439 exon 104441 104797 104441 ID=Msa1373560-mRNA-1:exon:3374;Parent=Msa1373560-mRNA-1
tig0019439 CDS 105980 105982 105980 ID=Msa1373560-mRNA-1:cds;Parent=Msa1373560-mRNA-1
tig0019439 CDS 105626 105871 105626 ID=Msa1373560-mRNA-1:cds;Parent=Msa1373560-mRNA-1
tig0019439 CDS 105311 105451 105311 ID=Msa1373560-mRNA-1:cds;Parent=Msa1373560-mRNA-1
tig0019439 CDS 104441 104797 104441 ID=Msa1373560-mRNA-1:cds;Parent=Msa1373560-mRNA-1
Gene Sequence

>Msa1373560

ATGGGAAACCAAAAGCCTGCATGGTTGGAAGCTCTTTATACAGAAAAGTTCTTTGTTGGTTGTTCTTACCATGAGAATGCAAAAAAGAATGAGAAGAATGTTTGTTGCTTAGATTGTTGCACAAGTATTTGTCCTCATTGCTTTCCATCTCATCGCTACCACCGCCTTCTTCAAGTTCGTCGTTATGTTTATCATGATGTTCTTAGATTGGAAGAACTTGAGAAACTTATAGACTGCACCAATGTCCAGGCCTATACTATCAATAGTGCCAAAGTGGTGTTCATCAAGAAGAGACCTCAAAACCGCCAATTCAAAGGATCAGGAAACTACTGCACTTCATGTGATAGAATCCTCCAAGAACCTTTTATCCATTGCTCTCTTGGATGCAAGGTGGATTTTGTGCTGAAACACTACAAAGACCTTTCACCCTACTTAAGGATATGCAAGACCCTACAATTAAGTCCTGACTATCTAATTCCACAAGAGATGGGGGATGAATTAGAAATGACAAGGTCAACAATTGTGGATTGTGATGATCCAATGAGTTCATATTCAGGATCATCATCAGGGTCAGAGAATATGAGCATGGCATGCACAGAAATTGTTAGGAAGAGAAGAAGTGGATGGACAAGTATGTGTGCAAAATTCATGGCCAATAATAATAGCAATAAAGTTTCTGATGAAGATATGGCTACCAGTATGATTAGTAGAAGAAAAGGAGTCCCTCATAGATCTCCTCTTTGTTAA

Protein sequence

>Msa1373560

MGNQKPAWLEALYTEKFFVGCSYHENAKKNEKNVCCLDCCTSICPHCFPSHRYHRLLQVRRYVYHDVLRLEELEKLIDCTNVQAYTINSAKVVFIKKRPQNRQFKGSGNYCTSCDRILQEPFIHCSLGCKVDFVLKHYKDLSPYLRICKTLQLSPDYLIPQEMGDELEMTRSTIVDCDDPMSSYSGSSSGSENMSMACTEIVRKRRSGWTSMCAKFMANNNSNKVSDEDMATSMISRRKGVPHRSPLC*