AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0902340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0902340 MtrunA17_Chr4g0065041 96.386 249 7 1 1 247 4 252 0.0 497
Msa0902340 MtrunA17_Chr2g0297251 47.737 243 106 6 4 246 36 257 2.06e-64 201
Msa0902340 MtrunA17_Chr7g0230511 41.434 251 131 6 2 246 6 246 9.66e-60 189
Msa0902340 MtrunA17_Chr4g0040071 34.156 243 110 5 5 246 15 208 4.56e-40 137
Msa0902340 MtrunA17_Chr5g0395181 45.926 135 72 1 5 138 21 155 2.10e-39 135
Msa0902340 MtrunA17_Chr8g0366581 48.462 130 66 1 2 130 30 159 1.90e-38 134
Msa0902340 MtrunA17_Chr5g0411151 45.652 138 74 1 2 138 32 169 5.25e-37 130
Msa0902340 MtrunA17_Chr7g0265291 42.647 136 74 1 5 136 7 142 3.83e-33 119
Msa0902340 MtrunA17_Chr1g0179781 42.188 128 72 2 5 130 7 134 1.57e-29 110
Msa0902340 MtrunA17_Chr4g0052451 58.333 84 29 1 55 132 10 93 1.43e-28 103
Msa0902340 MtrunA17_Chr2g0320561 39.007 141 76 4 5 135 5 145 1.33e-24 98.2
Msa0902340 MtrunA17_Chr4g0052461 66.667 57 19 0 2 58 19 75 6.94e-23 89.0
Msa0902340 MtrunA17_Chr2g0320521 37.857 140 76 4 7 135 8 147 5.78e-21 88.2
Msa0902340 MtrunA17_Chr8g0392151 33.793 145 74 3 7 130 15 158 5.86e-21 88.2
Msa0902340 MtrunA17_Chr2g0320551 34.783 138 80 4 5 132 5 142 4.28e-20 84.3
Msa0902340 MtrunA17_Chr4g0020811 37.410 139 70 5 7 131 8 143 3.60e-19 81.6
Msa0902340 MtrunA17_Chr2g0308401 38.129 139 69 6 7 131 6 141 1.37e-18 80.1
Msa0902340 MtrunA17_Chr8g0386511 33.929 112 66 2 33 142 2 107 1.20e-14 69.3
Msa0902340 MtrunA17_Chr1g0161601 43.902 82 44 2 2 83 45 124 1.55e-12 63.5
Msa0902340 MtrunA17_Chr5g0434331 31.868 91 59 2 4 92 42 131 1.03e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0902340 AT2G12646.1 66.537 257 74 5 1 247 2 256 1.91e-116 333
Msa0902340 AT2G12646.2 66.537 257 74 5 1 247 2 256 1.91e-116 333
Msa0902340 AT2G12646.3 66.535 254 73 5 4 247 2 253 5.95e-115 330
Msa0902340 AT3G60670.1 45.455 253 112 4 5 246 7 244 3.31e-72 221
Msa0902340 AT1G31040.1 46.311 244 111 6 4 246 18 242 2.92e-61 193
Msa0902340 AT4G17900.1 32.669 251 108 5 2 246 31 226 7.05e-37 130
Msa0902340 AT4G17900.2 32.669 251 108 5 2 246 17 212 1.18e-36 129
Msa0902340 AT1G32700.1 48.485 132 67 1 5 135 12 143 1.21e-36 129
Msa0902340 AT1G76590.1 32.922 243 147 3 5 246 18 245 4.26e-35 125
Msa0902340 AT1G21000.2 34.375 256 129 6 5 246 13 243 6.77e-35 125
Msa0902340 AT1G21000.1 34.375 256 129 6 5 246 16 246 7.77e-35 125
Msa0902340 AT1G43000.2 43.077 130 73 1 5 133 16 145 1.16e-32 119
Msa0902340 AT1G43000.1 43.077 130 73 1 5 133 9 138 1.27e-32 118
Msa0902340 AT5G46710.2 41.985 131 74 2 2 130 25 155 6.53e-30 110
Msa0902340 AT5G46710.3 41.985 131 74 2 2 130 9 139 7.45e-30 111
Msa0902340 AT5G46710.1 41.985 131 74 2 2 130 25 155 9.80e-30 111
Msa0902340 AT2G01818.1 39.860 143 76 3 6 138 12 154 1.51e-28 108
Msa0902340 AT2G27930.3 41.844 141 71 3 3 132 2 142 3.24e-28 105
Msa0902340 AT2G27930.2 41.844 141 71 3 3 132 2 142 3.24e-28 105
Msa0902340 AT2G27930.1 41.429 140 71 3 3 131 2 141 8.53e-28 105
Msa0902340 AT2G27930.4 41.429 140 71 3 3 131 2 141 8.53e-28 105
Msa0902340 AT1G32700.2 49.020 102 51 1 35 135 3 104 2.31e-26 101
Msa0902340 AT2G27930.5 44.186 86 39 1 55 131 59 144 3.83e-17 77.4
Msa0902340 AT2G27930.6 44.186 86 39 1 55 131 59 144 3.83e-17 77.4
Msa0902340 AT2G01818.2 36.471 85 48 2 60 138 6 90 2.44e-12 63.5

Find 53 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTTATTGCTATTATTAT+TGG 0.112766 6_1:-100541891 None:intergenic
CCAAGAGAGCAATGGATAAA+AGG 0.296836 6_1:-100541102 None:intergenic
CTTCCAACCATGCAGGCTTT+TGG 0.312977 6_1:-100540576 None:intergenic
TATACAGAAAAGTTCTTTGT+TGG 0.345795 6_1:+100540604 Msa0902340:CDS
AAGACCTTTCACCCTACTTA+AGG 0.378382 6_1:+100541654 Msa0902340:CDS
GATCCAATGAGTTCATATTC+AGG 0.387250 6_1:+100541773 Msa0902340:CDS
TAAAGTTTCTGATGAAGATA+TGG 0.401550 6_1:+100541907 Msa0902340:CDS
GATAGTCAGGACTTAATTGT+AGG 0.404339 6_1:-100541688 None:intergenic
AGCAATGGATAAAAGGTTCT+TGG 0.405041 6_1:-100541095 None:intergenic
TTATCATGATGTTCTTAGAT+TGG 0.410755 6_1:+100540756 Msa0902340:CDS
TTCCTGATCCTTTGAATTGG+CGG 0.427487 6_1:-100541044 None:intergenic
TGGCATGCACAGAAATTGTT+AGG 0.429624 6_1:+100541825 Msa0902340:CDS
TCATATTCAGGATCATCATC+AGG 0.433500 6_1:+100541785 Msa0902340:CDS
TCTTGTGGAATTAGATAGTC+AGG 0.440473 6_1:-100541701 None:intergenic
AGTTTCCTGATCCTTTGAAT+TGG 0.442272 6_1:-100541047 None:intergenic
AGTATGATTAGTAGAAGAAA+AGG 0.445334 6_1:+100541935 Msa0902340:CDS
AAGTATGTGTGCAAAATTCA+TGG 0.453257 6_1:+100541868 Msa0902340:CDS
CTTCTTGATGAACACCACTT+TGG 0.453482 6_1:-100541010 None:intergenic
TTTGGCACTATTGATAGTAT+AGG 0.459040 6_1:-100540992 None:intergenic
AACCGCCAATTCAAAGGATC+AGG 0.462617 6_1:+100541042 Msa0902340:CDS
GATCCTGAATATGAACTCAT+TGG 0.472047 6_1:-100541776 None:intergenic
AAACCAAAAGCCTGCATGGT+TGG 0.480103 6_1:+100540573 Msa0902340:CDS
GGTCTTGCATATCCTTAAGT+AGG 0.485067 6_1:-100541666 None:intergenic
ATTGTTAGGAAGAGAAGAAG+TGG 0.501836 6_1:+100541839 Msa0902340:CDS
CCATTGCTCTCTTGGATGCA+AGG 0.504085 6_1:+100541110 Msa0902340:CDS
CTATCTAATTCCACAAGAGA+TGG 0.516025 6_1:+100541706 Msa0902340:CDS
TATCTAATTCCACAAGAGAT+GGG 0.519713 6_1:+100541707 Msa0902340:CDS
AATGACAAGGTCAACAATTG+TGG 0.532726 6_1:+100541742 Msa0902340:CDS
CCTCAAAACCGCCAATTCAA+AGG 0.532742 6_1:+100541036 Msa0902340:CDS
GTCTTGCATATCCTTAAGTA+GGG 0.540564 6_1:-100541665 None:intergenic
AGGCGGTGGTAGCGATGAGA+TGG 0.543611 6_1:-100540712 None:intergenic
AATGGATAAAAGGTTCTTGG+AGG 0.548499 6_1:-100541092 None:intergenic
ATAGTCAGGACTTAATTGTA+GGG 0.550330 6_1:-100541687 None:intergenic
TAAAGAGCTTCCAACCATGC+AGG 0.552228 6_1:-100540583 None:intergenic
TAACAAAGAGGAGATCTATG+AGG 0.552341 6_1:-100541962 None:intergenic
TATAGACTGCACCAATGTCC+AGG 0.557416 6_1:+100540795 Msa0902340:CDS
TACTATCAATAGTGCCAAAG+TGG 0.558364 6_1:+100540996 Msa0902340:CDS
ATCTAATTCCACAAGAGATG+GGG 0.572263 6_1:+100541708 Msa0902340:CDS
TTAGGAAGAGAAGAAGTGGA+TGG 0.575841 6_1:+100541843 Msa0902340:CDS
AGGGAAACCAAAAGCCTGCA+TGG 0.579853 6_1:+100540569 None:intergenic
CATAACGACGAACTTGAAGA+AGG 0.581891 6_1:-100540732 None:intergenic
AACAAAGAGGAGATCTATGA+GGG 0.605762 6_1:-100541961 None:intergenic
GCTAACACTAATTAACAAAG+AGG 0.610407 6_1:-100541974 None:intergenic
ATATCCTTAAGTAGGGTGAA+AGG 0.612227 6_1:-100541658 None:intergenic
CCTTGCATCCAAGAGAGCAA+TGG 0.619111 6_1:-100541110 None:intergenic
CGATGAGATGGAAAGCAATG+AGG 0.624526 6_1:-100540700 None:intergenic
CATATTCAGGATCATCATCA+GGG 0.632732 6_1:+100541786 Msa0902340:CDS
AGGGTCAGAGAATATGAGCA+TGG 0.657131 6_1:+100541805 Msa0902340:CDS
TCTAATTCCACAAGAGATGG+GGG 0.658047 6_1:+100541709 Msa0902340:CDS
GACGAACTTGAAGAAGGCGG+TGG 0.658588 6_1:-100540726 None:intergenic
ATGTATATGTACCTGGACAT+TGG 0.663071 6_1:-100540806 None:intergenic
GGGATGAATTAGAAATGACA+AGG 0.706223 6_1:+100541729 Msa0902340:CDS
AACGACGAACTTGAAGAAGG+CGG 0.734968 6_1:-100540729 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTATACATAGTATTA+TGG + chr6_1:100541140-100541159 Msa0902340:intron 10.0%
!!! TTCCTTTTTTTTATTTTTTA+TGG + chr6_1:100541202-100541221 Msa0902340:intron 10.0%
!! TTCCATAAAAAATAAAAAAA+AGG - chr6_1:100541207-100541226 None:intergenic 10.0%
!! ATTAATTATACATAGTATTA+TGG + chr6_1:100541140-100541159 Msa0902340:intron 10.0%
!!! TTCCTTTTTTTTATTTTTTA+TGG + chr6_1:100541202-100541221 Msa0902340:intron 10.0%
!! TTCCATAAAAAATAAAAAAA+AGG - chr6_1:100541207-100541226 None:intergenic 10.0%
!! TGAATTACATAAGATTTAAT+TGG - chr6_1:100540914-100540933 None:intergenic 15.0%
!!! TTTTAATTTCTGATTGAAAA+AGG + chr6_1:100540946-100540965 Msa0902340:intron 15.0%
!!! TACATATTTTTTTTATGAGA+AGG - chr6_1:100541426-100541445 None:intergenic 15.0%
!!! AACTTTATTGCTATTATTAT+TGG - chr6_1:100541894-100541913 None:intergenic 15.0%
!! TGAATTACATAAGATTTAAT+TGG - chr6_1:100540914-100540933 None:intergenic 15.0%
!!! TTTTAATTTCTGATTGAAAA+AGG + chr6_1:100540946-100540965 Msa0902340:intron 15.0%
!!! TACATATTTTTTTTATGAGA+AGG - chr6_1:100541426-100541445 None:intergenic 15.0%
!!! AACTTTATTGCTATTATTAT+TGG - chr6_1:100541894-100541913 None:intergenic 15.0%
!! AAATCTTATGTAATTCAACA+TGG + chr6_1:100540917-100540936 Msa0902340:intron 20.0%
!! ATGGTTTATACATAGAATTA+TGG + chr6_1:100541159-100541178 Msa0902340:intron 20.0%
!! AACTCATTGAATTAAATGAT+TGG + chr6_1:100541252-100541271 Msa0902340:intron 20.0%
!! ATGAGCATAAATGAATTTAA+TGG - chr6_1:100541494-100541513 None:intergenic 20.0%
!!! ATATGCTTAATTTGATCATA+TGG + chr6_1:100541591-100541610 Msa0902340:intron 20.0%
!! AAATCTTATGTAATTCAACA+TGG + chr6_1:100540917-100540936 Msa0902340:intron 20.0%
!! ATGGTTTATACATAGAATTA+TGG + chr6_1:100541159-100541178 Msa0902340:intron 20.0%
!! AACTCATTGAATTAAATGAT+TGG + chr6_1:100541252-100541271 Msa0902340:intron 20.0%
!! ATGAGCATAAATGAATTTAA+TGG - chr6_1:100541494-100541513 None:intergenic 20.0%
!!! ATATGCTTAATTTGATCATA+TGG + chr6_1:100541591-100541610 Msa0902340:intron 20.0%
! TATACAGAAAAGTTCTTTGT+TGG + chr6_1:100540604-100540623 Msa0902340:CDS 25.0%
! TTATCATGATGTTCTTAGAT+TGG + chr6_1:100540756-100540775 Msa0902340:CDS 25.0%
!! TTTGAATTATGTTGTTTACC+AGG + chr6_1:100540969-100540988 Msa0902340:intron 25.0%
! AATTGAGCACATATATTGAT+TGG + chr6_1:100541319-100541338 Msa0902340:intron 25.0%
!!! ACAATTTTTTGCACAAGATA+TGG + chr6_1:100541531-100541550 Msa0902340:intron 25.0%
!!! CAATTTTTTGCACAAGATAT+GGG + chr6_1:100541532-100541551 Msa0902340:intron 25.0%
! CATATGGAGTATATATTTGT+AGG + chr6_1:100541607-100541626 Msa0902340:intron 25.0%
! TAAAGTTTCTGATGAAGATA+TGG + chr6_1:100541907-100541926 Msa0902340:CDS 25.0%
!! TTTTCTTCTACTAATCATAC+TGG - chr6_1:100541936-100541955 None:intergenic 25.0%
! AGTATGATTAGTAGAAGAAA+AGG + chr6_1:100541935-100541954 Msa0902340:CDS 25.0%
! TATACAGAAAAGTTCTTTGT+TGG + chr6_1:100540604-100540623 Msa0902340:CDS 25.0%
! TTATCATGATGTTCTTAGAT+TGG + chr6_1:100540756-100540775 Msa0902340:CDS 25.0%
!! TTTGAATTATGTTGTTTACC+AGG + chr6_1:100540969-100540988 Msa0902340:intron 25.0%
! AATTGAGCACATATATTGAT+TGG + chr6_1:100541319-100541338 Msa0902340:intron 25.0%
!!! ACAATTTTTTGCACAAGATA+TGG + chr6_1:100541531-100541550 Msa0902340:intron 25.0%
!!! CAATTTTTTGCACAAGATAT+GGG + chr6_1:100541532-100541551 Msa0902340:intron 25.0%
! CATATGGAGTATATATTTGT+AGG + chr6_1:100541607-100541626 Msa0902340:intron 25.0%
! TAAAGTTTCTGATGAAGATA+TGG + chr6_1:100541907-100541926 Msa0902340:CDS 25.0%
!! TTTTCTTCTACTAATCATAC+TGG - chr6_1:100541936-100541955 None:intergenic 25.0%
! AGTATGATTAGTAGAAGAAA+AGG + chr6_1:100541935-100541954 Msa0902340:CDS 25.0%
!!! CATTCTTTTTTGCATTCTCA+TGG - chr6_1:100540639-100540658 None:intergenic 30.0%
ATTGAACATGTATATGTACC+TGG - chr6_1:100540816-100540835 None:intergenic 30.0%
! TTTGGCACTATTGATAGTAT+AGG - chr6_1:100540995-100541014 None:intergenic 30.0%
TATGTGACCGTTATAAATCA+AGG + chr6_1:100541383-100541402 Msa0902340:intron 30.0%
ATGTGACCGTTATAAATCAA+GGG + chr6_1:100541384-100541403 Msa0902340:intron 30.0%
ATGGAGTATATATTTGTAGG+TGG + chr6_1:100541610-100541629 Msa0902340:intron 30.0%
ATAGTCAGGACTTAATTGTA+GGG - chr6_1:100541690-100541709 None:intergenic 30.0%
TATCTAATTCCACAAGAGAT+GGG + chr6_1:100541707-100541726 Msa0902340:CDS 30.0%
AAGTATGTGTGCAAAATTCA+TGG + chr6_1:100541868-100541887 Msa0902340:CDS 30.0%
!!! CATTCTTTTTTGCATTCTCA+TGG - chr6_1:100540639-100540658 None:intergenic 30.0%
ATTGAACATGTATATGTACC+TGG - chr6_1:100540816-100540835 None:intergenic 30.0%
! TTTGGCACTATTGATAGTAT+AGG - chr6_1:100540995-100541014 None:intergenic 30.0%
TATGTGACCGTTATAAATCA+AGG + chr6_1:100541383-100541402 Msa0902340:intron 30.0%
ATGTGACCGTTATAAATCAA+GGG + chr6_1:100541384-100541403 Msa0902340:intron 30.0%
ATGGAGTATATATTTGTAGG+TGG + chr6_1:100541610-100541629 Msa0902340:intron 30.0%
ATAGTCAGGACTTAATTGTA+GGG - chr6_1:100541690-100541709 None:intergenic 30.0%
TATCTAATTCCACAAGAGAT+GGG + chr6_1:100541707-100541726 Msa0902340:CDS 30.0%
AAGTATGTGTGCAAAATTCA+TGG + chr6_1:100541868-100541887 Msa0902340:CDS 30.0%
ATGTATATGTACCTGGACAT+TGG - chr6_1:100540809-100540828 None:intergenic 35.0%
TACTATCAATAGTGCCAAAG+TGG + chr6_1:100540996-100541015 Msa0902340:CDS 35.0%
AGTTTCCTGATCCTTTGAAT+TGG - chr6_1:100541050-100541069 None:intergenic 35.0%
AATGGATAAAAGGTTCTTGG+AGG - chr6_1:100541095-100541114 None:intergenic 35.0%
AGCAATGGATAAAAGGTTCT+TGG - chr6_1:100541098-100541117 None:intergenic 35.0%
CGGTATCCCTTGATTTATAA+CGG - chr6_1:100541393-100541412 None:intergenic 35.0%
TATGAGAAGGAAACTGAACT+CGG - chr6_1:100541413-100541432 None:intergenic 35.0%
ATATCCTTAAGTAGGGTGAA+AGG - chr6_1:100541661-100541680 None:intergenic 35.0%
GTCTTGCATATCCTTAAGTA+GGG - chr6_1:100541668-100541687 None:intergenic 35.0%
GATAGTCAGGACTTAATTGT+AGG - chr6_1:100541691-100541710 None:intergenic 35.0%
TCTTGTGGAATTAGATAGTC+AGG - chr6_1:100541704-100541723 None:intergenic 35.0%
CTATCTAATTCCACAAGAGA+TGG + chr6_1:100541706-100541725 Msa0902340:CDS 35.0%
ATCTAATTCCACAAGAGATG+GGG + chr6_1:100541708-100541727 Msa0902340:CDS 35.0%
GGGATGAATTAGAAATGACA+AGG + chr6_1:100541729-100541748 Msa0902340:CDS 35.0%
AATGACAAGGTCAACAATTG+TGG + chr6_1:100541742-100541761 Msa0902340:CDS 35.0%
GATCCAATGAGTTCATATTC+AGG + chr6_1:100541773-100541792 Msa0902340:CDS 35.0%
GATCCTGAATATGAACTCAT+TGG - chr6_1:100541779-100541798 None:intergenic 35.0%
TCATATTCAGGATCATCATC+AGG + chr6_1:100541785-100541804 Msa0902340:CDS 35.0%
CATATTCAGGATCATCATCA+GGG + chr6_1:100541786-100541805 Msa0902340:CDS 35.0%
ATTGTTAGGAAGAGAAGAAG+TGG + chr6_1:100541839-100541858 Msa0902340:CDS 35.0%
AACAAAGAGGAGATCTATGA+GGG - chr6_1:100541964-100541983 None:intergenic 35.0%
TAACAAAGAGGAGATCTATG+AGG - chr6_1:100541965-100541984 None:intergenic 35.0%
CATAGATCTCCTCTTTGTTA+AGG + chr6_1:100541965-100541984 Msa0902340:CDS 35.0%
ATGTATATGTACCTGGACAT+TGG - chr6_1:100540809-100540828 None:intergenic 35.0%
TACTATCAATAGTGCCAAAG+TGG + chr6_1:100540996-100541015 Msa0902340:CDS 35.0%
AGTTTCCTGATCCTTTGAAT+TGG - chr6_1:100541050-100541069 None:intergenic 35.0%
AATGGATAAAAGGTTCTTGG+AGG - chr6_1:100541095-100541114 None:intergenic 35.0%
AGCAATGGATAAAAGGTTCT+TGG - chr6_1:100541098-100541117 None:intergenic 35.0%
CGGTATCCCTTGATTTATAA+CGG - chr6_1:100541393-100541412 None:intergenic 35.0%
TATGAGAAGGAAACTGAACT+CGG - chr6_1:100541413-100541432 None:intergenic 35.0%
ATATCCTTAAGTAGGGTGAA+AGG - chr6_1:100541661-100541680 None:intergenic 35.0%
GTCTTGCATATCCTTAAGTA+GGG - chr6_1:100541668-100541687 None:intergenic 35.0%
GATAGTCAGGACTTAATTGT+AGG - chr6_1:100541691-100541710 None:intergenic 35.0%
TCTTGTGGAATTAGATAGTC+AGG - chr6_1:100541704-100541723 None:intergenic 35.0%
CTATCTAATTCCACAAGAGA+TGG + chr6_1:100541706-100541725 Msa0902340:CDS 35.0%
ATCTAATTCCACAAGAGATG+GGG + chr6_1:100541708-100541727 Msa0902340:CDS 35.0%
GGGATGAATTAGAAATGACA+AGG + chr6_1:100541729-100541748 Msa0902340:CDS 35.0%
AATGACAAGGTCAACAATTG+TGG + chr6_1:100541742-100541761 Msa0902340:CDS 35.0%
GATCCAATGAGTTCATATTC+AGG + chr6_1:100541773-100541792 Msa0902340:CDS 35.0%
GATCCTGAATATGAACTCAT+TGG - chr6_1:100541779-100541798 None:intergenic 35.0%
TCATATTCAGGATCATCATC+AGG + chr6_1:100541785-100541804 Msa0902340:CDS 35.0%
CATATTCAGGATCATCATCA+GGG + chr6_1:100541786-100541805 Msa0902340:CDS 35.0%
ATTGTTAGGAAGAGAAGAAG+TGG + chr6_1:100541839-100541858 Msa0902340:CDS 35.0%
AACAAAGAGGAGATCTATGA+GGG - chr6_1:100541964-100541983 None:intergenic 35.0%
TAACAAAGAGGAGATCTATG+AGG - chr6_1:100541965-100541984 None:intergenic 35.0%
CATAACGACGAACTTGAAGA+AGG - chr6_1:100540735-100540754 None:intergenic 40.0%
! CACTATTGATAGTATAGGCC+TGG - chr6_1:100540990-100541009 None:intergenic 40.0%
CTTCTTGATGAACACCACTT+TGG - chr6_1:100541013-100541032 None:intergenic 40.0%
TTCCTGATCCTTTGAATTGG+CGG - chr6_1:100541047-100541066 None:intergenic 40.0%
CCAAGAGAGCAATGGATAAA+AGG - chr6_1:100541105-100541124 None:intergenic 40.0%
! CCTTTTATCCATTGCTCTCT+TGG + chr6_1:100541102-100541121 Msa0902340:CDS 40.0%
AAGACCTTTCACCCTACTTA+AGG + chr6_1:100541654-100541673 Msa0902340:CDS 40.0%
GGTCTTGCATATCCTTAAGT+AGG - chr6_1:100541669-100541688 None:intergenic 40.0%
TCTAATTCCACAAGAGATGG+GGG + chr6_1:100541709-100541728 Msa0902340:CDS 40.0%
TGGCATGCACAGAAATTGTT+AGG + chr6_1:100541825-100541844 Msa0902340:CDS 40.0%
TTAGGAAGAGAAGAAGTGGA+TGG + chr6_1:100541843-100541862 Msa0902340:CDS 40.0%
CATAACGACGAACTTGAAGA+AGG - chr6_1:100540735-100540754 None:intergenic 40.0%
! CACTATTGATAGTATAGGCC+TGG - chr6_1:100540990-100541009 None:intergenic 40.0%
CTTCTTGATGAACACCACTT+TGG - chr6_1:100541013-100541032 None:intergenic 40.0%
TTCCTGATCCTTTGAATTGG+CGG - chr6_1:100541047-100541066 None:intergenic 40.0%
CCAAGAGAGCAATGGATAAA+AGG - chr6_1:100541105-100541124 None:intergenic 40.0%
! CCTTTTATCCATTGCTCTCT+TGG + chr6_1:100541102-100541121 Msa0902340:CDS 40.0%
AAGACCTTTCACCCTACTTA+AGG + chr6_1:100541654-100541673 Msa0902340:CDS 40.0%
GGTCTTGCATATCCTTAAGT+AGG - chr6_1:100541669-100541688 None:intergenic 40.0%
TCTAATTCCACAAGAGATGG+GGG + chr6_1:100541709-100541728 Msa0902340:CDS 40.0%
TGGCATGCACAGAAATTGTT+AGG + chr6_1:100541825-100541844 Msa0902340:CDS 40.0%
TTAGGAAGAGAAGAAGTGGA+TGG + chr6_1:100541843-100541862 Msa0902340:CDS 40.0%
AAACCAAAAGCCTGCATGGT+TGG + chr6_1:100540573-100540592 Msa0902340:CDS 45.0%
TAAAGAGCTTCCAACCATGC+AGG - chr6_1:100540586-100540605 None:intergenic 45.0%
CGATGAGATGGAAAGCAATG+AGG - chr6_1:100540703-100540722 None:intergenic 45.0%
AACGACGAACTTGAAGAAGG+CGG - chr6_1:100540732-100540751 None:intergenic 45.0%
TATAGACTGCACCAATGTCC+AGG + chr6_1:100540795-100540814 Msa0902340:CDS 45.0%
! CCTTTGAATTGGCGGTTTTG+AGG - chr6_1:100541039-100541058 None:intergenic 45.0%
CCTCAAAACCGCCAATTCAA+AGG + chr6_1:100541036-100541055 Msa0902340:CDS 45.0%
AACCGCCAATTCAAAGGATC+AGG + chr6_1:100541042-100541061 Msa0902340:CDS 45.0%
AATTCATCCCCCATCTCTTG+TGG - chr6_1:100541719-100541738 None:intergenic 45.0%
AGGGTCAGAGAATATGAGCA+TGG + chr6_1:100541805-100541824 Msa0902340:CDS 45.0%
AAACCAAAAGCCTGCATGGT+TGG + chr6_1:100540573-100540592 Msa0902340:CDS 45.0%
TAAAGAGCTTCCAACCATGC+AGG - chr6_1:100540586-100540605 None:intergenic 45.0%
CGATGAGATGGAAAGCAATG+AGG - chr6_1:100540703-100540722 None:intergenic 45.0%
AACGACGAACTTGAAGAAGG+CGG - chr6_1:100540732-100540751 None:intergenic 45.0%
TATAGACTGCACCAATGTCC+AGG + chr6_1:100540795-100540814 Msa0902340:CDS 45.0%
! CCTTTGAATTGGCGGTTTTG+AGG - chr6_1:100541039-100541058 None:intergenic 45.0%
CCTCAAAACCGCCAATTCAA+AGG + chr6_1:100541036-100541055 Msa0902340:CDS 45.0%
AACCGCCAATTCAAAGGATC+AGG + chr6_1:100541042-100541061 Msa0902340:CDS 45.0%
AATTCATCCCCCATCTCTTG+TGG - chr6_1:100541719-100541738 None:intergenic 45.0%
AGGGTCAGAGAATATGAGCA+TGG + chr6_1:100541805-100541824 Msa0902340:CDS 45.0%
!! TGAATTTAATTATATAAAAA+AGG + chr6_1:100541448-100541467 Msa0902340:intron 5.0%
!! TGAATTTAATTATATAAAAA+AGG + chr6_1:100541448-100541467 Msa0902340:intron 5.0%
! CTTCCAACCATGCAGGCTTT+TGG - chr6_1:100540579-100540598 None:intergenic 50.0%
CCTTGCATCCAAGAGAGCAA+TGG - chr6_1:100541113-100541132 None:intergenic 50.0%
CCATTGCTCTCTTGGATGCA+AGG + chr6_1:100541110-100541129 Msa0902340:CDS 50.0%
! CTTCCAACCATGCAGGCTTT+TGG - chr6_1:100540579-100540598 None:intergenic 50.0%
CCTTGCATCCAAGAGAGCAA+TGG - chr6_1:100541113-100541132 None:intergenic 50.0%
CCATTGCTCTCTTGGATGCA+AGG + chr6_1:100541110-100541129 Msa0902340:CDS 50.0%
GACGAACTTGAAGAAGGCGG+TGG - chr6_1:100540729-100540748 None:intergenic 55.0%
GACGAACTTGAAGAAGGCGG+TGG - chr6_1:100540729-100540748 None:intergenic 55.0%
! AGGCGGTGGTAGCGATGAGA+TGG - chr6_1:100540715-100540734 None:intergenic 60.0%
! AGGCGGTGGTAGCGATGAGA+TGG - chr6_1:100540715-100540734 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 100540571 100541985 100540571 ID=Msa0902340;Name=Msa0902340
chr6_1 mRNA 100540571 100541985 100540571 ID=Msa0902340-mRNA-1;Parent=Msa0902340;Name=Msa0902340-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|247
chr6_1 exon 100540571 100540816 100540571 ID=Msa0902340-mRNA-1:exon:17773;Parent=Msa0902340-mRNA-1
chr6_1 exon 100540991 100541131 100540991 ID=Msa0902340-mRNA-1:exon:17774;Parent=Msa0902340-mRNA-1
chr6_1 exon 100541629 100541985 100541629 ID=Msa0902340-mRNA-1:exon:17775;Parent=Msa0902340-mRNA-1
chr6_1 CDS 100540571 100540816 100540571 ID=Msa0902340-mRNA-1:cds;Parent=Msa0902340-mRNA-1
chr6_1 CDS 100540991 100541131 100540991 ID=Msa0902340-mRNA-1:cds;Parent=Msa0902340-mRNA-1
chr6_1 CDS 100541629 100541985 100541629 ID=Msa0902340-mRNA-1:cds;Parent=Msa0902340-mRNA-1
Gene Sequence

>Msa0902340

GGAAACCAAAAGCCTGCATGGTTGGAAGCTCTTTATACAGAAAAGTTCTTTGTTGGTTGTTCTTACCATGAGAATGCAAAAAAGAATGAGAAGAATGTTTGTTGCTTAGATTGTTGCACAAGTATTTGTCCTCATTGCTTTCCATCTCATCGCTACCACCGCCTTCTTCAAGTTCGTCGTTATGTTTATCATGATGTTCTTAGATTGGAAGAACTTGAGAAACTTATAGACTGCACCAATGTCCAGGCCTATACTATCAATAGTGCCAAAGTGGTGTTCATCAAGAAGAGACCTCAAAACCGCCAATTCAAAGGATCAGGAAACTACTGCACTTCATGTGATAGAATCCTCCAAGAACCTTTTATCCATTGCTCTCTTGGATGCAAGGTGGATTTTGTGCTGAAACACTACAAAGACCTTTCACCCTACTTAAGGATATGCAAGACCCTACAATTAAGTCCTGACTATCTAATTCCACAAGAGATGGGGGATGAATTAGAAATGACAAGGTCAACAATTGTGGATTGTGATGATCCAATGAGTTCATATTCAGGATCATCATCAGGGTCAGAGAATATGAGCATGGCATGCACAGAAATTGTTAGGAAGAGAAGAAGTGGATGGACAAGTATGTGTGCAAAATTCATGGCCAATAATAATAGCAATAAAGTTTCTGATGAAGATATGGCTACCAGTATGATTAGTAGAAGAAAAGGAGTCCCTCATAGATCTCCTCTTTGTTAA

Protein sequence

>Msa0902340

GNQKPAWLEALYTEKFFVGCSYHENAKKNEKNVCCLDCCTSICPHCFPSHRYHRLLQVRRYVYHDVLRLEELEKLIDCTNVQAYTINSAKVVFIKKRPQNRQFKGSGNYCTSCDRILQEPFIHCSLGCKVDFVLKHYKDLSPYLRICKTLQLSPDYLIPQEMGDELEMTRSTIVDCDDPMSSYSGSSSGSENMSMACTEIVRKRRSGWTSMCAKFMANNNSNKVSDEDMATSMISRRKGVPHRSPLC*