Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415130 | XP_024633571.1 | 82.022 | 267 | 20 | 2 | 1 | 242 | 1 | 264 | 1.35e-141 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415130 | sp|Q6PGS5|TLC4B_XENLA | 28.980 | 245 | 134 | 7 | 21 | 235 | 11 | 245 | 7.12e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415130 | I3SF47 | 82.022 | 267 | 20 | 2 | 1 | 242 | 1 | 264 | 6.46e-142 | 407 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0115270 | Msa0415130 | 0.816342 | 5.810238e-52 | -8.615850e-47 |
| Msa0115390 | Msa0415130 | 0.818856 | 1.575231e-52 | -8.615850e-47 |
| Msa0229130 | Msa0415130 | 0.932112 | 1.388073e-94 | -8.615850e-47 |
| Msa0367470 | Msa0415130 | 0.828880 | 7.029323e-55 | -8.615850e-47 |
| Msa0415130 | Msa0421780 | -0.803577 | 3.262889e-49 | -8.615850e-47 |
| Msa0415130 | Msa0460020 | 0.896633 | 3.058244e-76 | -8.615850e-47 |
| Msa0415130 | Msa0970420 | 0.805298 | 1.428152e-49 | -8.615850e-47 |
| Msa0415130 | Msa1208890 | -0.808964 | 2.390656e-50 | -8.615850e-47 |
| Msa0415130 | Msa1245940 | -0.807217 | 5.629802e-50 | -8.615850e-47 |
| Msa0415130 | Msa1259070 | -0.806232 | 9.092332e-50 | -8.615850e-47 |
| Msa0415130 | Msa1400610 | -0.810232 | 1.276561e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415130 | MtrunA17_Chr3g0108871 | 82.022 | 267 | 20 | 2 | 1 | 242 | 1 | 264 | 1.24e-145 | 407 |
| Msa0415130 | MtrunA17_Chr5g0442461 | 40.244 | 246 | 113 | 3 | 22 | 239 | 35 | 274 | 2.87e-44 | 150 |
| Msa0415130 | MtrunA17_Chr3g0095631 | 41.837 | 98 | 49 | 1 | 109 | 198 | 42 | 139 | 9.30e-21 | 85.1 |
| Msa0415130 | MtrunA17_Chr3g0095641 | 37.500 | 88 | 55 | 0 | 22 | 109 | 35 | 122 | 3.28e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415130 | AT4G10360.1 | 47.876 | 259 | 105 | 3 | 8 | 241 | 8 | 261 | 4.96e-72 | 221 |
| Msa0415130 | AT4G10360.3 | 47.876 | 259 | 105 | 3 | 8 | 241 | 8 | 261 | 4.96e-72 | 221 |
| Msa0415130 | AT4G10360.2 | 47.876 | 259 | 105 | 3 | 8 | 241 | 8 | 261 | 4.96e-72 | 221 |
| Msa0415130 | AT4G19645.2 | 43.443 | 244 | 109 | 3 | 22 | 239 | 28 | 268 | 2.95e-49 | 163 |
| Msa0415130 | AT4G19645.1 | 43.443 | 244 | 109 | 3 | 22 | 239 | 28 | 268 | 2.95e-49 | 163 |
| Msa0415130 | AT4G19645.3 | 43.443 | 244 | 109 | 3 | 22 | 239 | 28 | 268 | 2.95e-49 | 163 |
| Msa0415130 | AT4G19645.5 | 43.443 | 244 | 109 | 3 | 22 | 239 | 28 | 268 | 2.95e-49 | 163 |
| Msa0415130 | AT4G19645.4 | 43.443 | 244 | 109 | 3 | 22 | 239 | 28 | 268 | 2.95e-49 | 163 |
| Msa0415130 | AT1G31300.3 | 38.934 | 244 | 115 | 3 | 22 | 237 | 37 | 274 | 1.34e-42 | 146 |
| Msa0415130 | AT1G31300.1 | 38.934 | 244 | 115 | 3 | 22 | 237 | 37 | 274 | 1.34e-42 | 146 |
| Msa0415130 | AT1G31300.2 | 38.934 | 244 | 115 | 3 | 22 | 237 | 37 | 274 | 1.34e-42 | 146 |
Find 52 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAGTAGAATTGTATATT+TGG | 0.201744 | 3_2:-61159474 | Msa0415130:three_prime_UTR |
| TATCAGTGATGAATTTATTT+TGG | 0.229458 | 3_2:-61159671 | Msa0415130:CDS |
| AGAGGAAAAGAGTGTGTTAA+TGG | 0.309691 | 3_2:+61164581 | None:intergenic |
| AGCACATATCTACATATTAA+TGG | 0.324767 | 3_2:-61160780 | Msa0415130:CDS |
| TGAAGAAGTTGCTTATCTTA+TGG | 0.336391 | 3_2:-61160512 | Msa0415130:intron |
| AATGGTGTTGCATTGTTCTT+CGG | 0.349885 | 3_2:-61160589 | Msa0415130:CDS |
| ACTGACCTGAGCAGAAAATA+AGG | 0.352716 | 3_2:+61164547 | None:intergenic |
| ATGGTGTTGCATTGTTCTTC+GGG | 0.356765 | 3_2:-61160588 | Msa0415130:CDS |
| CTTGACCACTTAGCAAAGAT+TGG | 0.384356 | 3_2:+61160801 | None:intergenic |
| TTTCTCAAATTCAGTATTGT+CGG | 0.391339 | 3_2:-61161863 | Msa0415130:intron |
| AATGGGTTTCTACAGCTTGT+TGG | 0.403889 | 3_2:-61159709 | Msa0415130:CDS |
| AGAGCTCAAAACTTTACATC+TGG | 0.413236 | 3_2:-61160612 | Msa0415130:CDS |
| TCCCCTACTTCAGGTGAAGC+AGG | 0.423119 | 3_2:-61159739 | Msa0415130:intron |
| TACAGAAAATTGAGCAGTGC+TGG | 0.425806 | 3_2:-61162111 | Msa0415130:CDS |
| ATAAGATAAGCAACTTCTTC+AGG | 0.449556 | 3_2:+61160514 | None:intergenic |
| TAATCACATATACAGGTACT+TGG | 0.468412 | 3_2:-61160650 | Msa0415130:intron |
| GGAAAGTTGAATGGAATAAC+CGG | 0.468796 | 3_2:-61162089 | Msa0415130:intron |
| TACCATCTTAGATTAACAAA+AGG | 0.476978 | 3_2:+61160734 | None:intergenic |
| ATTATCCAATCTTTGCTAAG+TGG | 0.477430 | 3_2:-61160806 | Msa0415130:CDS |
| TGCATTGTTCTTCGGGTGGT+TGG | 0.478507 | 3_2:-61160581 | Msa0415130:CDS |
| CAAGAGGTAAAATGAAGTAA+AGG | 0.496123 | 3_2:+61161948 | None:intergenic |
| CTCAAAGCAAAGAAATTCAA+TGG | 0.501598 | 3_2:-61164020 | Msa0415130:CDS |
| GTGAAGCAGGTCTTCCCAAT+GGG | 0.505190 | 3_2:-61159726 | Msa0415130:CDS |
| CTGGAAGATTGCCAAGGGTA+TGG | 0.506373 | 3_2:-61159646 | Msa0415130:CDS |
| TTTAGTTCACGGTTGTTCAT+CGG | 0.516483 | 3_2:-61162135 | Msa0415130:CDS |
| TTGATCGATCATCAAGTAGC+AGG | 0.528304 | 3_2:+61159572 | None:intergenic |
| CATTTAAGGTTCTACACCAC+GGG | 0.531024 | 3_2:-61160844 | Msa0415130:intron |
| GATCAATCATTCATTATACA+TGG | 0.535644 | 3_2:-61164658 | Msa0415130:five_prime_UTR |
| AACAAGCTGTAGAAACCCAT+TGG | 0.539360 | 3_2:+61159711 | None:intergenic |
| GGGTTTCTACAGCTTGTTGG+TGG | 0.540026 | 3_2:-61159706 | Msa0415130:CDS |
| CTACTTGATGATCGATCAAA+CGG | 0.542954 | 3_2:-61159568 | Msa0415130:three_prime_UTR |
| TCAAAACTTTACATCTGGAA+TGG | 0.555641 | 3_2:-61160607 | Msa0415130:CDS |
| GGTGAAGCAGGTCTTCCCAA+TGG | 0.558925 | 3_2:-61159727 | Msa0415130:CDS |
| AACAAAAGGAGTTGTGCCCT+CGG | 0.560818 | 3_2:+61160748 | None:intergenic |
| ACAAGCTGTAGAAACCCATT+GGG | 0.561929 | 3_2:+61159712 | None:intergenic |
| ACAGAAAATTGAGCAGTGCT+GGG | 0.571297 | 3_2:-61162110 | Msa0415130:CDS |
| TACAGGTACTTGGACACCGC+CGG | 0.578821 | 3_2:-61160640 | Msa0415130:intron |
| TTGGTTCTGGAAGATTGCCA+AGG | 0.591420 | 3_2:-61159652 | Msa0415130:CDS |
| GCAGTGCTGGGAAAGTTGAA+TGG | 0.591925 | 3_2:-61162098 | Msa0415130:CDS |
| ATAGATCTGATAAGATCAAG+AGG | 0.592544 | 3_2:+61161932 | None:intergenic |
| TGGTTCTGGAAGATTGCCAA+GGG | 0.598928 | 3_2:-61159651 | Msa0415130:CDS |
| TTGGTACTGTCTATCATACT+CGG | 0.609435 | 3_2:-61160562 | Msa0415130:CDS |
| AATAAGGCGAAAGAGACAAG+AGG | 0.629325 | 3_2:+61164563 | None:intergenic |
| TCAAGTAGCAGGAAATGTGG+TGG | 0.634332 | 3_2:+61159583 | None:intergenic |
| TCATTTAAGGTTCTACACCA+CGG | 0.635801 | 3_2:-61160845 | Msa0415130:intron |
| TCATCAAGTAGCAGGAAATG+TGG | 0.645335 | 3_2:+61159580 | None:intergenic |
| GTGTTGCATTGTTCTTCGGG+TGG | 0.657137 | 3_2:-61160585 | Msa0415130:CDS |
| TTCATCACTGATAACACAGG+AGG | 0.672119 | 3_2:+61159681 | None:intergenic |
| TTGAAAACAACGATAGCCCG+TGG | 0.685510 | 3_2:+61160828 | None:intergenic |
| AAATTCATCACTGATAACAC+AGG | 0.689682 | 3_2:+61159678 | None:intergenic |
| AACTTCTTCAGGTACTACAA+TGG | 0.695859 | 3_2:+61160525 | None:intergenic |
| TGTTGATTGCAACTGTACTG+AGG | 0.708807 | 3_2:+61159534 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATGAAAAACTATTTT+GGG | + | chr3_2:61160825-61160844 | None:intergenic | 10.0% |
| !!! | ATATTTATGAAAAACTATTT+TGG | + | chr3_2:61160826-61160845 | None:intergenic | 10.0% |
| !!! | AGTTTTTCTATATTTATAAT+AGG | + | chr3_2:61161343-61161362 | None:intergenic | 10.0% |
| !!! | ACGTTTTTATTTATTCAAAA+GGG | - | chr3_2:61159808-61159827 | Msa0415130:intron | 15.0% |
| !!! | CTTTAAAAGACTTTTTTTTT+GGG | - | chr3_2:61159909-61159928 | Msa0415130:intron | 15.0% |
| !!! | TTTTTTTTTGGGTATTTTTA+TGG | - | chr3_2:61159920-61159939 | Msa0415130:intron | 15.0% |
| !!! | TCTCAAATTATTAGTTTTTA+TGG | - | chr3_2:61160281-61160300 | Msa0415130:intron | 15.0% |
| !!! | TTATTTAGTTCATAGAAATA+TGG | - | chr3_2:61160770-61160789 | Msa0415130:CDS | 15.0% |
| !! | TGTCAATTTAACAATTAAAA+TGG | - | chr3_2:61160927-61160946 | Msa0415130:intron | 15.0% |
| !! | TTAACAATTAAAATGGTATT+TGG | - | chr3_2:61160934-61160953 | Msa0415130:intron | 15.0% |
| !! | AGACAATTATATAGAAAATT+AGG | + | chr3_2:61161468-61161487 | None:intergenic | 15.0% |
| !! | GTTAAATTAAAAGTCAATTA+TGG | + | chr3_2:61162045-61162064 | None:intergenic | 15.0% |
| !!! | TTTACATTTTAACTAGATTT+AGG | - | chr3_2:61162283-61162302 | Msa0415130:intron | 15.0% |
| !!! | AACATTTTTACAAAGTAAAT+AGG | + | chr3_2:61162791-61162810 | None:intergenic | 15.0% |
| !! | TCATAATTAAAAGTGAAAAT+AGG | + | chr3_2:61162828-61162847 | None:intergenic | 15.0% |
| !!! | TTGTTTTTAATGATTTGTAT+AGG | - | chr3_2:61162942-61162961 | Msa0415130:intron | 15.0% |
| !! | ATTAAAAAAGGATTATCAAA+AGG | - | chr3_2:61163677-61163696 | Msa0415130:intron | 15.0% |
| !! | TTAAAAAAGGATTATCAAAA+GGG | - | chr3_2:61163678-61163697 | Msa0415130:intron | 15.0% |
| !! | AAAAATTATTCAATTCAGTA+AGG | + | chr3_2:61164619-61164638 | None:intergenic | 15.0% |
| !!! | AAGTTTGAAACTTGATTATA+TGG | + | chr3_2:61159605-61159624 | None:intergenic | 20.0% |
| !!! | CACGTTTTTATTTATTCAAA+AGG | - | chr3_2:61159807-61159826 | Msa0415130:intron | 20.0% |
| !! | TTAAAGCATAGAATAATTGA+GGG | + | chr3_2:61159895-61159914 | None:intergenic | 20.0% |
| !!! | TTTAAAGCATAGAATAATTG+AGG | + | chr3_2:61159896-61159915 | None:intergenic | 20.0% |
| !!! | GCTTTAAAAGACTTTTTTTT+TGG | - | chr3_2:61159908-61159927 | Msa0415130:intron | 20.0% |
| !!! | ATGGAAATTTCTTTTTCTTT+TGG | - | chr3_2:61160013-61160032 | Msa0415130:intron | 20.0% |
| !!! | TGGAAATTTCTTTTTCTTTT+GGG | - | chr3_2:61160014-61160033 | Msa0415130:intron | 20.0% |
| !! | AGAAATTAATGAACCAAATT+AGG | - | chr3_2:61160185-61160204 | Msa0415130:intron | 20.0% |
| !! | AAGTCATAAAAATCCTAATT+TGG | + | chr3_2:61160201-61160220 | None:intergenic | 20.0% |
| !!! | ATTTTTATGACTTTTATCGA+TGG | - | chr3_2:61160208-61160227 | Msa0415130:intron | 20.0% |
| !!! | CAAATTATTAGTTTTTATGG+TGG | - | chr3_2:61160284-61160303 | Msa0415130:intron | 20.0% |
| !! | ATGCTATCTATAATATAACT+CGG | - | chr3_2:61160534-61160553 | Msa0415130:CDS | 20.0% |
| !! | AGTGTATAGAAAAAAATATG+TGG | + | chr3_2:61160988-61161007 | None:intergenic | 20.0% |
| !!! | TTATGGCTTTTATATCAAAT+TGG | - | chr3_2:61161052-61161071 | Msa0415130:intron | 20.0% |
| !! | TAACAAAAACAAACTAGAAA+AGG | + | chr3_2:61161776-61161795 | None:intergenic | 20.0% |
| !!! | ATTTTTAATGATCTTCTTGA+AGG | - | chr3_2:61161889-61161908 | Msa0415130:CDS | 20.0% |
| !!! | TTTATTTCATTTTTCAATGC+AGG | - | chr3_2:61162065-61162084 | Msa0415130:intron | 20.0% |
| !!! | TTATTTCATTTTTCAATGCA+GGG | - | chr3_2:61162066-61162085 | Msa0415130:intron | 20.0% |
| !! | AAGAACTAAAAAATCAACTT+CGG | + | chr3_2:61162263-61162282 | None:intergenic | 20.0% |
| !! | TCTTTAGTAACATTATTCTT+AGG | - | chr3_2:61162603-61162622 | Msa0415130:intron | 20.0% |
| !! | ATGTAAGTCAAAAAGATATT+AGG | - | chr3_2:61162764-61162783 | Msa0415130:intron | 20.0% |
| !! | TGTAAGTCAAAAAGATATTA+GGG | - | chr3_2:61162765-61162784 | Msa0415130:intron | 20.0% |
| !! | ACAAGATATAAATGAAAACA+AGG | + | chr3_2:61162926-61162945 | None:intergenic | 20.0% |
| !! | TAACTAACTTCATTCATTTA+AGG | - | chr3_2:61163209-61163228 | Msa0415130:intron | 20.0% |
| !! | ATTACTTTAATCACATATAC+AGG | - | chr3_2:61163410-61163429 | Msa0415130:intron | 20.0% |
| !! | TAGTGACAGATAATTAAAAA+AGG | - | chr3_2:61163665-61163684 | Msa0415130:intron | 20.0% |
| !! | TTCACTAGATTAAAATCATA+GGG | + | chr3_2:61164296-61164315 | None:intergenic | 20.0% |
| !! | ATTCACTAGATTAAAATCAT+AGG | + | chr3_2:61164297-61164316 | None:intergenic | 20.0% |
| !!! | TATCAGTGATGAATTTATTT+TGG | - | chr3_2:61164396-61164415 | Msa0415130:intron | 20.0% |
| !! | ATTCAGTAGAATTGTATATT+TGG | - | chr3_2:61164593-61164612 | Msa0415130:five_prime_UTR | 20.0% |
| ! | GATCAATCATTCATTATACA+TGG | - | chr3_2:61159409-61159428 | Msa0415130:three_prime_UTR | 25.0% |
| ! | ATTATATGGTAGAAAGTTGA+AGG | + | chr3_2:61159591-61159610 | None:intergenic | 25.0% |
| ! | AGTTTCAAACTTTAACTCAA+TGG | - | chr3_2:61159613-61159632 | Msa0415130:CDS | 25.0% |
| ! | TGGTGACTCATTATAATATT+TGG | + | chr3_2:61159775-61159794 | None:intergenic | 25.0% |
| ! | GCTCTTATGTTATAAGTTTA+TGG | - | chr3_2:61159942-61159961 | Msa0415130:intron | 25.0% |
| !! | ATTTAGTGATTTTCAACAAG+TGG | - | chr3_2:61159985-61160004 | Msa0415130:intron | 25.0% |
| !! | TTTAGTGATTTTCAACAAGT+GGG | - | chr3_2:61159986-61160005 | Msa0415130:intron | 25.0% |
| !!! | ATTATTAGTTTTTATGGTGG+AGG | - | chr3_2:61160287-61160306 | Msa0415130:intron | 25.0% |
| ! | TATCACTCATTTATGTAAGT+AGG | - | chr3_2:61160402-61160421 | Msa0415130:intron | 25.0% |
| !!! | TCCTTGTTTTGAATGTAATT+TGG | - | chr3_2:61160489-61160508 | Msa0415130:intron | 25.0% |
| ! | TCCAAATTACATTCAAAACA+AGG | + | chr3_2:61160493-61160512 | None:intergenic | 25.0% |
| ! | AGAAAGAAAAAAAAATCCGT+TGG | - | chr3_2:61160589-61160608 | Msa0415130:CDS | 25.0% |
| ! | GAAAGAAAAAAAAATCCGTT+GGG | - | chr3_2:61160590-61160609 | Msa0415130:CDS | 25.0% |
| !! | TGCATTTTTAACGAAATTAC+TGG | - | chr3_2:61160633-61160652 | Msa0415130:CDS | 25.0% |
| ! | AGTTAGTGAATATTCTCTTA+TGG | - | chr3_2:61161035-61161054 | Msa0415130:intron | 25.0% |
| !! | GCTTTTATATCAAATTGGAT+TGG | - | chr3_2:61161057-61161076 | Msa0415130:intron | 25.0% |
| ! | CTATATCAGCTTGTAAAAAT+TGG | + | chr3_2:61161232-61161251 | None:intergenic | 25.0% |
| !! | ATTTTTACAAGCTGATATAG+CGG | - | chr3_2:61161232-61161251 | Msa0415130:intron | 25.0% |
| ! | TATTTATAATAGGTCACGTT+TGG | + | chr3_2:61161333-61161352 | None:intergenic | 25.0% |
| ! | TTACGTATTACGATGAATAT+AGG | + | chr3_2:61161386-61161405 | None:intergenic | 25.0% |
| ! | ATAATTAAATACGGGAATGA+TGG | + | chr3_2:61161435-61161454 | None:intergenic | 25.0% |
| ! | TTCCCGTATTTAATTATATG+CGG | - | chr3_2:61161438-61161457 | Msa0415130:intron | 25.0% |
| ! | AGACCGCATATAATTAAATA+CGG | + | chr3_2:61161444-61161463 | None:intergenic | 25.0% |
| !!! | AGTTTTTATTGGTTAAGTCT+TGG | - | chr3_2:61161607-61161626 | Msa0415130:intron | 25.0% |
| ! | AAACAGAAATCGTTATACAA+AGG | + | chr3_2:61162009-61162028 | None:intergenic | 25.0% |
| !!! | TATTTCATTTTTCAATGCAG+GGG | - | chr3_2:61162067-61162086 | Msa0415130:intron | 25.0% |
| ! | TTTCTCAAATTCAGTATTGT+CGG | - | chr3_2:61162204-61162223 | Msa0415130:intron | 25.0% |
| ! | TAACTAGATTTAGGCAAAAA+CGG | - | chr3_2:61162292-61162311 | Msa0415130:intron | 25.0% |
| !! | ATAAAATACGATCACCTTTT+AGG | + | chr3_2:61162351-61162370 | None:intergenic | 25.0% |
| ! | GATTTAAATCTAACAGAAAC+AGG | + | chr3_2:61162543-61162562 | None:intergenic | 25.0% |
| ! | AACATTATTCTTAGGCATTA+TGG | - | chr3_2:61162611-61162630 | Msa0415130:intron | 25.0% |
| ! | AGCACATATCTACATATTAA+TGG | - | chr3_2:61163287-61163306 | Msa0415130:intron | 25.0% |
| ! | TACCATCTTAGATTAACAAA+AGG | + | chr3_2:61163336-61163355 | None:intergenic | 25.0% |
| !!! | TATTTGCTTGCTTTTACTTT+TGG | - | chr3_2:61163375-61163394 | Msa0415130:intron | 25.0% |
| !!! | TTATGGTCATGCTTTTATTT+TGG | - | chr3_2:61163572-61163591 | Msa0415130:intron | 25.0% |
| ! | AATTTGAGTCATTTGATGTA+TGG | - | chr3_2:61163958-61163977 | Msa0415130:intron | 25.0% |
| ! | GTTCTCAATGAAAAACATAA+AGG | + | chr3_2:61163995-61164014 | None:intergenic | 25.0% |
| !! | TTATGTTTTTCATTGAGAAC+TGG | - | chr3_2:61163995-61164014 | Msa0415130:CDS | 25.0% |
| ! | AAATACACACAAAAACCAAA+TGG | + | chr3_2:61164056-61164075 | None:intergenic | 25.0% |
| !!! | TGATGAATTTATTTTGGTTC+TGG | - | chr3_2:61164402-61164421 | Msa0415130:intron | 25.0% |
| TTTCATGTGTGCATATGATT+TGG | - | chr3_2:61159714-61159733 | Msa0415130:CDS | 30.0% | |
| AAAACGTGTCTACTAAACAA+TGG | + | chr3_2:61159795-61159814 | None:intergenic | 30.0% | |
| !!! | TTCTTTTTCTTTTGGGTTCT+TGG | - | chr3_2:61160021-61160040 | Msa0415130:intron | 30.0% |
| CTCAAAGCAAAGAAATTCAA+TGG | - | chr3_2:61160047-61160066 | Msa0415130:intron | 30.0% | |
| ACTGAGTTATATGTTGTGAA+TGG | - | chr3_2:61160149-61160168 | Msa0415130:intron | 30.0% | |
| TATGTTGTGAATGGTTCTTA+AGG | - | chr3_2:61160158-61160177 | Msa0415130:intron | 30.0% | |
| CTGAGTATCATTTCAGAAAT+AGG | - | chr3_2:61160320-61160339 | Msa0415130:intron | 30.0% | |
| AAGATGAGAGGTAAATCAAA+TGG | - | chr3_2:61160343-61160362 | Msa0415130:intron | 30.0% | |
| TAATATAACTCGGTATCATG+TGG | - | chr3_2:61160544-61160563 | Msa0415130:CDS | 30.0% | |
| AATTGTAATTGTGCTTACTC+TGG | - | chr3_2:61160712-61160731 | Msa0415130:intron | 30.0% | |
| TCAAATTACTTTCGAAGGAA+TGG | + | chr3_2:61160854-61160873 | None:intergenic | 30.0% | |
| TTCGTTCAAATTACTTTCGA+AGG | + | chr3_2:61160859-61160878 | None:intergenic | 30.0% | |
| !!! | CTATCCTAGTTTTGCTATTA+GGG | - | chr3_2:61161189-61161208 | Msa0415130:intron | 30.0% |
| ATTTCCCTAATAGCAAAACT+AGG | + | chr3_2:61161196-61161215 | None:intergenic | 30.0% | |
| GCTTGTAAAAATTGGAATAG+TGG | + | chr3_2:61161224-61161243 | None:intergenic | 30.0% | |
| GACCGCATATAATTAAATAC+GGG | + | chr3_2:61161443-61161462 | None:intergenic | 30.0% | |
| !!! | GCTCTGAGTTTAGTTTTTAT+TGG | - | chr3_2:61161596-61161615 | Msa0415130:intron | 30.0% |
| ! | TATTGGTTAAGTCTTGGTAT+AGG | - | chr3_2:61161613-61161632 | Msa0415130:intron | 30.0% |
| TCTCAAATAACAACAACTTC+AGG | + | chr3_2:61161679-61161698 | None:intergenic | 30.0% | |
| !! | TGAAGTTGTTGTTATTTGAG+AGG | - | chr3_2:61161678-61161697 | Msa0415130:intron | 30.0% |
| !! | GAAGTTGTTGTTATTTGAGA+GGG | - | chr3_2:61161679-61161698 | Msa0415130:intron | 30.0% |
| ! | TTGAGAGGGTATATTAAGAA+TGG | - | chr3_2:61161693-61161712 | Msa0415130:intron | 30.0% |
| AGTTTGAACTTTGAACTGTT+AGG | - | chr3_2:61161722-61161741 | Msa0415130:intron | 30.0% | |
| TTTGTCCAACTTATCTGAAT+TGG | - | chr3_2:61161800-61161819 | Msa0415130:intron | 30.0% | |
| TCGTTATACAAAGGAATTAC+CGG | + | chr3_2:61162000-61162019 | None:intergenic | 30.0% | |
| TAAAGGATGCAAAAAAAGCA+TGG | + | chr3_2:61162105-61162124 | None:intergenic | 30.0% | |
| CAAGAGGTAAAATGAAGTAA+AGG | + | chr3_2:61162122-61162141 | None:intergenic | 30.0% | |
| ATAGATCTGATAAGATCAAG+AGG | + | chr3_2:61162138-61162157 | None:intergenic | 30.0% | |
| ! | CATGATAAGTTTTCCATCAA+TGG | - | chr3_2:61162449-61162468 | Msa0415130:intron | 30.0% |
| TTGTATATCTCTTCCATTGA+TGG | + | chr3_2:61162465-61162484 | None:intergenic | 30.0% | |
| AATACACTACTAGCATATGA+TGG | + | chr3_2:61162512-61162531 | None:intergenic | 30.0% | |
| GATATCAAACAAGAAGAAAC+AGG | + | chr3_2:61162568-61162587 | None:intergenic | 30.0% | |
| GGAAAGAACGATTATATAGT+TGG | - | chr3_2:61162632-61162651 | Msa0415130:intron | 30.0% | |
| !! | AGGTTATTTTCTAACAGATC+TGG | - | chr3_2:61162699-61162718 | Msa0415130:intron | 30.0% |
| !! | TATTTGGAATTTTCCAGCTT+TGG | - | chr3_2:61162729-61162748 | Msa0415130:intron | 30.0% |
| !! | ATTTGGAATTTTCCAGCTTT+GGG | - | chr3_2:61162730-61162749 | Msa0415130:intron | 30.0% |
| AAAGCAGGTAAATGAAAACA+AGG | + | chr3_2:61162859-61162878 | None:intergenic | 30.0% | |
| ! | TTAGACAAAACTTTGAAAGC+AGG | + | chr3_2:61162874-61162893 | None:intergenic | 30.0% |
| !! | CCTTGATTTCATTTTGTTTC+CGG | + | chr3_2:61163038-61163057 | None:intergenic | 30.0% |
| GAAACAAAATGAAATCAAGG+TGG | - | chr3_2:61163038-61163057 | Msa0415130:intron | 30.0% | |
| AAACAACTTAATGACCAGTT+TGG | + | chr3_2:61163118-61163137 | None:intergenic | 30.0% | |
| TAGTTAGCATAACTAAGATG+TGG | + | chr3_2:61163195-61163214 | None:intergenic | 30.0% | |
| ATTATCCAATCTTTGCTAAG+TGG | - | chr3_2:61163261-61163280 | Msa0415130:intron | 30.0% | |
| ! | CTCCTTTTGTTAATCTAAGA+TGG | - | chr3_2:61163331-61163350 | Msa0415130:intron | 30.0% |
| TAATCACATATACAGGTACT+TGG | - | chr3_2:61163417-61163436 | Msa0415130:intron | 30.0% | |
| TCAAAACTTTACATCTGGAA+TGG | - | chr3_2:61163460-61163479 | Msa0415130:intron | 30.0% | |
| ATAAGATAAGCAACTTCTTC+AGG | + | chr3_2:61163556-61163575 | None:intergenic | 30.0% | |
| TGAAGAAGTTGCTTATCTTA+TGG | - | chr3_2:61163555-61163574 | Msa0415130:intron | 30.0% | |
| !!! | CTTCATTTAGTTTTCTCTTC+TGG | - | chr3_2:61163601-61163620 | Msa0415130:intron | 30.0% |
| ! | GTTATGAATGAGCTATGTTT+TGG | - | chr3_2:61163623-61163642 | Msa0415130:intron | 30.0% |
| TACAAAACATAGAACATGAC+TGG | + | chr3_2:61163838-61163857 | None:intergenic | 30.0% | |
| ! | GTCATGTTCTATGTTTTGTA+TGG | - | chr3_2:61163838-61163857 | Msa0415130:intron | 30.0% |
| ATATCAAATACGATGCCATT+TGG | - | chr3_2:61164038-61164057 | Msa0415130:CDS | 30.0% | |
| AAATTCATCACTGATAACAC+AGG | + | chr3_2:61164392-61164411 | None:intergenic | 30.0% | |
| ! | AGAGGAAAAGAGTGTGTTAA+TGG | + | chr3_2:61159489-61159508 | None:intergenic | 35.0% |
| ! | ATGGCTGCATTTACTTCTTT+TGG | - | chr3_2:61159632-61159651 | Msa0415130:CDS | 35.0% |
| ! | TGGCTGCATTTACTTCTTTT+GGG | - | chr3_2:61159633-61159652 | Msa0415130:CDS | 35.0% |
| GCAGAAGAAGATGAAAATAG+AGG | + | chr3_2:61159661-61159680 | None:intergenic | 35.0% | |
| GAATAATTGAGGGTGGAAAT+AGG | + | chr3_2:61159885-61159904 | None:intergenic | 35.0% | |
| AAGCATAGAATAATTGAGGG+TGG | + | chr3_2:61159892-61159911 | None:intergenic | 35.0% | |
| !!! | TTTTCAACAAGTGGGTTGAA+TGG | - | chr3_2:61159994-61160013 | Msa0415130:intron | 35.0% |
| TTCAGAAATAGGAAGATGAG+AGG | - | chr3_2:61160331-61160350 | Msa0415130:intron | 35.0% | |
| ATGAGAGGTAAATCAAATGG+AGG | - | chr3_2:61160346-61160365 | Msa0415130:intron | 35.0% | |
| TGAGAGGTAAATCAAATGGA+GGG | - | chr3_2:61160347-61160366 | Msa0415130:intron | 35.0% | |
| TTACTGGTAAAGACTGTGTA+CGG | - | chr3_2:61160649-61160668 | Msa0415130:intron | 35.0% | |
| !! | TCTTTTGCTGACTAGTAAAG+TGG | + | chr3_2:61160884-61160903 | None:intergenic | 35.0% |
| !! | TATTTGACAACACTGACTCA+GGG | + | chr3_2:61161105-61161124 | None:intergenic | 35.0% |
| !!! | GCTATCCTAGTTTTGCTATT+AGG | - | chr3_2:61161188-61161207 | Msa0415130:intron | 35.0% |
| AACACAGCTTTCATACTGAA+AGG | + | chr3_2:61161410-61161429 | None:intergenic | 35.0% | |
| TGAAATAGCAAATAGCGTTG+CGG | + | chr3_2:61161524-61161543 | None:intergenic | 35.0% | |
| ATCAGCCAATTCAGATAAGT+TGG | + | chr3_2:61161808-61161827 | None:intergenic | 35.0% | |
| ! | TTTAGTTCACGGTTGTTCAT+CGG | - | chr3_2:61161932-61161951 | Msa0415130:CDS | 35.0% |
| GGAAAGTTGAATGGAATAAC+CGG | - | chr3_2:61161978-61161997 | Msa0415130:CDS | 35.0% | |
| ATAAACTATGCAGGCCTAAA+AGG | - | chr3_2:61162334-61162353 | Msa0415130:intron | 35.0% | |
| GAGAACTGTTCAAAGAATGA+TGG | + | chr3_2:61162676-61162695 | None:intergenic | 35.0% | |
| TTCTTTGAACAGTTCTCTAC+AGG | - | chr3_2:61162679-61162698 | Msa0415130:intron | 35.0% | |
| !!! | CAGATCTGGCTTTTGTTATT+TGG | - | chr3_2:61162713-61162732 | Msa0415130:intron | 35.0% |
| !! | CATTTTGTTTCCGGTGTTTT+TGG | + | chr3_2:61163029-61163048 | None:intergenic | 35.0% |
| CCGGAAACAAAATGAAATCA+AGG | - | chr3_2:61163035-61163054 | Msa0415130:intron | 35.0% | |
| ! | TCATTTAAGGTTCTACACCA+CGG | - | chr3_2:61163222-61163241 | Msa0415130:intron | 35.0% |
| ! | ATTAATGGTTCTTTTCACCG+AGG | - | chr3_2:61163302-61163321 | Msa0415130:intron | 35.0% |
| ! | TTAATGGTTCTTTTCACCGA+GGG | - | chr3_2:61163303-61163322 | Msa0415130:intron | 35.0% |
| !!! | AAGTTTTGAGCTCTTAAGAC+CGG | + | chr3_2:61163449-61163468 | None:intergenic | 35.0% |
| AGAGCTCAAAACTTTACATC+TGG | - | chr3_2:61163455-61163474 | Msa0415130:intron | 35.0% | |
| !! | AATGGTGTTGCATTGTTCTT+CGG | - | chr3_2:61163478-61163497 | Msa0415130:intron | 35.0% |
| TTGGTACTGTCTATCATACT+CGG | - | chr3_2:61163505-61163524 | Msa0415130:intron | 35.0% | |
| AACTTCTTCAGGTACTACAA+TGG | + | chr3_2:61163545-61163564 | None:intergenic | 35.0% | |
| TAAGAAACATAAGCAGCGTT+TGG | - | chr3_2:61163781-61163800 | Msa0415130:intron | 35.0% | |
| GGAGTTAAAGTACAAAATGC+TGG | - | chr3_2:61163876-61163895 | Msa0415130:intron | 35.0% | |
| GTGTAAACAAGAACATGAAC+AGG | + | chr3_2:61164202-61164221 | None:intergenic | 35.0% | |
| ! | TGTTCTTGTTTACACACATG+TGG | - | chr3_2:61164207-61164226 | Msa0415130:intron | 35.0% |
| TGTAAAGTATATATGCGACG+AGG | + | chr3_2:61164269-61164288 | None:intergenic | 35.0% | |
| ! | CTACTTGATGATCGATCAAA+CGG | - | chr3_2:61164499-61164518 | Msa0415130:intron | 35.0% |
| AATAAGGCGAAAGAGACAAG+AGG | + | chr3_2:61159507-61159526 | None:intergenic | 40.0% | |
| !!! | TTTCGCCTTATTTTCTGCTC+AGG | - | chr3_2:61159515-61159534 | Msa0415130:three_prime_UTR | 40.0% |
| ACTGACCTGAGCAGAAAATA+AGG | + | chr3_2:61159523-61159542 | None:intergenic | 40.0% | |
| TTGACTCTGATCACATGTGT+CGG | + | chr3_2:61160250-61160269 | None:intergenic | 40.0% | |
| GAGAGGTAAATCAAATGGAG+GGG | - | chr3_2:61160348-61160367 | Msa0415130:intron | 40.0% | |
| ! | AGGGTCAATTGGGTAGTTTT+GGG | - | chr3_2:61160675-61160694 | Msa0415130:intron | 40.0% |
| !! | CTATTTGACAACACTGACTC+AGG | + | chr3_2:61161106-61161125 | None:intergenic | 40.0% |
| GAGTCAGTGTTGTCAAATAG+CGG | - | chr3_2:61161106-61161125 | Msa0415130:intron | 40.0% | |
| CGCAATGCTATAGTGCTTTA+GGG | + | chr3_2:61161132-61161151 | None:intergenic | 40.0% | |
| TCGCAATGCTATAGTGCTTT+AGG | + | chr3_2:61161133-61161152 | None:intergenic | 40.0% | |
| ATAGCGGCAATAGCAGAAAA+AGG | - | chr3_2:61161248-61161267 | Msa0415130:intron | 40.0% | |
| ! | GTCTTATTCCAACTGCTATG+CGG | - | chr3_2:61161484-61161503 | Msa0415130:intron | 40.0% |
| GAAATAGCAAATAGCGTTGC+GGG | + | chr3_2:61161523-61161542 | None:intergenic | 40.0% | |
| !! | ACGCTATTTGCTATTTCACC+TGG | - | chr3_2:61161526-61161545 | Msa0415130:intron | 40.0% |
| !! | CTATTTGCTATTTCACCTGG+CGG | - | chr3_2:61161529-61161548 | Msa0415130:intron | 40.0% |
| !!! | TATTTCACCTGGCGGATTTT+GGG | - | chr3_2:61161537-61161556 | Msa0415130:intron | 40.0% |
| !! | GTGTTATCAATAGCGGATTG+TGG | + | chr3_2:61161575-61161594 | None:intergenic | 40.0% |
| CAGAGCAGTGTTATCAATAG+CGG | + | chr3_2:61161582-61161601 | None:intergenic | 40.0% | |
| GGTTAAGTCTTGGTATAGGT+AGG | - | chr3_2:61161617-61161636 | Msa0415130:intron | 40.0% | |
| !!! | TGACTGCTGCTTTTAGTTCA+CGG | - | chr3_2:61161921-61161940 | Msa0415130:CDS | 40.0% |
| TACAGAAAATTGAGCAGTGC+TGG | - | chr3_2:61161956-61161975 | Msa0415130:CDS | 40.0% | |
| ACAGAAAATTGAGCAGTGCT+GGG | - | chr3_2:61161957-61161976 | Msa0415130:CDS | 40.0% | |
| CAAAAACGGTACTCATGAGA+GGG | - | chr3_2:61162306-61162325 | Msa0415130:intron | 40.0% | |
| AAAAACGGTACTCATGAGAG+GGG | - | chr3_2:61162307-61162326 | Msa0415130:intron | 40.0% | |
| CTATGCTTCACCAAAAACAC+CGG | - | chr3_2:61163016-61163035 | Msa0415130:intron | 40.0% | |
| AACGCTTTCTCAAACCAAAC+TGG | - | chr3_2:61163101-61163120 | Msa0415130:intron | 40.0% | |
| ! | CATTTAAGGTTCTACACCAC+GGG | - | chr3_2:61163223-61163242 | Msa0415130:intron | 40.0% |
| CTTGACCACTTAGCAAAGAT+TGG | + | chr3_2:61163269-61163288 | None:intergenic | 40.0% | |
| !! | ATGGTGTTGCATTGTTCTTC+GGG | - | chr3_2:61163479-61163498 | Msa0415130:intron | 40.0% |
| ATAAGCAGCGTTTGGTAGAA+AGG | - | chr3_2:61163789-61163808 | Msa0415130:intron | 40.0% | |
| GTATGGCGCAAGTTAATATC+AGG | - | chr3_2:61163855-61163874 | Msa0415130:intron | 40.0% | |
| GAGATAGAGATAAACGCACA+CGG | - | chr3_2:61164111-61164130 | Msa0415130:intron | 40.0% | |
| !! | CTGTGTTTCATTTTTCCTGC+AGG | - | chr3_2:61164163-61164182 | Msa0415130:intron | 40.0% |
| CATGCAGACCTCATCAAAAT+GGG | + | chr3_2:61164234-61164253 | None:intergenic | 40.0% | |
| ACAAGCTGTAGAAACCCATT+GGG | + | chr3_2:61164358-61164377 | None:intergenic | 40.0% | |
| AACAAGCTGTAGAAACCCAT+TGG | + | chr3_2:61164359-61164378 | None:intergenic | 40.0% | |
| ! | AATGGGTTTCTACAGCTTGT+TGG | - | chr3_2:61164358-61164377 | Msa0415130:intron | 40.0% |
| TTCATCACTGATAACACAGG+AGG | + | chr3_2:61164389-61164408 | None:intergenic | 40.0% | |
| !! | AAGAGTTTTGACCATACCCT+TGG | + | chr3_2:61164435-61164454 | None:intergenic | 40.0% |
| TCATCAAGTAGCAGGAAATG+TGG | + | chr3_2:61164490-61164509 | None:intergenic | 40.0% | |
| TTGATCGATCATCAAGTAGC+AGG | + | chr3_2:61164498-61164517 | None:intergenic | 40.0% | |
| ! | TGTTGATTGCAACTGTACTG+AGG | + | chr3_2:61164536-61164555 | None:intergenic | 40.0% |
| TAAAGACTGTGTACGGTGGA+GGG | - | chr3_2:61160656-61160675 | Msa0415130:intron | 45.0% | |
| ! | GAGGGTCAATTGGGTAGTTT+TGG | - | chr3_2:61160674-61160693 | Msa0415130:intron | 45.0% |
| GTATATGTGCAGTGTTCTGC+TGG | - | chr3_2:61160746-61160765 | Msa0415130:CDS | 45.0% | |
| TCTGCTACGAAAACCACGAA+CGG | - | chr3_2:61161164-61161183 | Msa0415130:intron | 45.0% | |
| AACTGAACAATCTGCACGTG+TGG | - | chr3_2:61161300-61161319 | Msa0415130:intron | 45.0% | |
| !!! | CTATTTCACCTGGCGGATTT+TGG | - | chr3_2:61161536-61161555 | Msa0415130:intron | 45.0% |
| GCAAAAACGGTACTCATGAG+AGG | - | chr3_2:61162305-61162324 | Msa0415130:intron | 45.0% | |
| AGGGGAGTGATAAACTATGC+AGG | - | chr3_2:61162325-61162344 | Msa0415130:intron | 45.0% | |
| !!! | TGGAATTTTCCAGCTTTGGG+AGG | - | chr3_2:61162733-61162752 | Msa0415130:intron | 45.0% |
| !!! | TTTTCCAGCTTTGGGAGGTT+TGG | - | chr3_2:61162738-61162757 | Msa0415130:intron | 45.0% |
| TATTCCAAACCTCCCAAAGC+TGG | + | chr3_2:61162745-61162764 | None:intergenic | 45.0% | |
| !!! | CGGTGTTTTTGGTGAAGCAT+AGG | + | chr3_2:61163018-61163037 | None:intergenic | 45.0% |
| TTGAAAACAACGATAGCCCG+TGG | + | chr3_2:61163242-61163261 | None:intergenic | 45.0% | |
| AACAAAAGGAGTTGTGCCCT+CGG | + | chr3_2:61163322-61163341 | None:intergenic | 45.0% | |
| ! | TTTTGAGCTCTTAAGACCGG+CGG | + | chr3_2:61163446-61163465 | None:intergenic | 45.0% |
| ! | CATTTTTCCTGCAGGTAGCA+AGG | - | chr3_2:61164171-61164190 | Msa0415130:intron | 45.0% |
| !! | CATGTGGACCCATTTTGATG+AGG | - | chr3_2:61164223-61164242 | Msa0415130:intron | 45.0% |
| GCATGCAGACCTCATCAAAA+TGG | + | chr3_2:61164235-61164254 | None:intergenic | 45.0% | |
| ! | GTCTTTTTCTCCCCTACTTC+AGG | - | chr3_2:61164319-61164338 | Msa0415130:intron | 45.0% |
| !! | TTGGTTCTGGAAGATTGCCA+AGG | - | chr3_2:61164415-61164434 | Msa0415130:intron | 45.0% |
| !! | TGGTTCTGGAAGATTGCCAA+GGG | - | chr3_2:61164416-61164435 | Msa0415130:intron | 45.0% |
| TCAAGTAGCAGGAAATGTGG+TGG | + | chr3_2:61164487-61164506 | None:intergenic | 45.0% | |
| ! | TGGCTGCTCTCTGTGTTTTC+TGG | - | chr3_2:61160067-61160086 | Msa0415130:intron | 50.0% |
| ACTCGGTATCATGTGGCTCA+TGG | - | chr3_2:61160551-61160570 | Msa0415130:CDS | 50.0% | |
| ACGCAAGCTCTTCTACCCAA+CGG | + | chr3_2:61160608-61160627 | None:intergenic | 50.0% | |
| CTGGTAAAGACTGTGTACGG+TGG | - | chr3_2:61160652-61160671 | Msa0415130:intron | 50.0% | |
| GTAAAGACTGTGTACGGTGG+AGG | - | chr3_2:61160655-61160674 | Msa0415130:intron | 50.0% | |
| TGTACGGTGGAGGGTCAATT+GGG | - | chr3_2:61160665-61160684 | Msa0415130:intron | 50.0% | |
| !! | CACTGACTCAGGGACATTAC+AGG | + | chr3_2:61161095-61161114 | None:intergenic | 50.0% |
| AACTAGGATAGCACCGTTCG+TGG | + | chr3_2:61161180-61161199 | None:intergenic | 50.0% | |
| AGAAACACCCAAAATCCGCC+AGG | + | chr3_2:61161547-61161566 | None:intergenic | 50.0% | |
| ! | GCAGTGCTGGGAAAGTTGAA+TGG | - | chr3_2:61161969-61161988 | Msa0415130:CDS | 50.0% |
| GTGTTGCATTGTTCTTCGGG+TGG | - | chr3_2:61163482-61163501 | Msa0415130:intron | 50.0% | |
| TGCATTGTTCTTCGGGTGGT+TGG | - | chr3_2:61163486-61163505 | Msa0415130:intron | 50.0% | |
| GGAAAATCCTTGCTACCTGC+AGG | + | chr3_2:61164181-61164200 | None:intergenic | 50.0% | |
| ACCTGCTTCACCTGAAGTAG+GGG | + | chr3_2:61164332-61164351 | None:intergenic | 50.0% | |
| GACCTGCTTCACCTGAAGTA+GGG | + | chr3_2:61164333-61164352 | None:intergenic | 50.0% | |
| AGACCTGCTTCACCTGAAGT+AGG | + | chr3_2:61164334-61164353 | None:intergenic | 50.0% | |
| GTGAAGCAGGTCTTCCCAAT+GGG | - | chr3_2:61164341-61164360 | Msa0415130:intron | 50.0% | |
| !! | GGGTTTCTACAGCTTGTTGG+TGG | - | chr3_2:61164361-61164380 | Msa0415130:intron | 50.0% |
| CTGGAAGATTGCCAAGGGTA+TGG | - | chr3_2:61164421-61164440 | Msa0415130:intron | 50.0% | |
| GTGTACGGTGGAGGGTCAAT+TGG | - | chr3_2:61160664-61160683 | Msa0415130:intron | 55.0% | |
| TGCGAAAGCCGCATAGCAGT+TGG | + | chr3_2:61161495-61161514 | None:intergenic | 55.0% | |
| TACAGGTACTTGGACACCGC+CGG | - | chr3_2:61163427-61163446 | Msa0415130:intron | 55.0% | |
| TCCCCTACTTCAGGTGAAGC+AGG | - | chr3_2:61164328-61164347 | Msa0415130:intron | 55.0% | |
| GGTGAAGCAGGTCTTCCCAA+TGG | - | chr3_2:61164340-61164359 | Msa0415130:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 61159409 | 61164680 | 61159409 | ID=Msa0415130;Name=Msa0415130 |
| chr3_2 | mRNA | 61159409 | 61164680 | 61159409 | ID=Msa0415130-mRNA-1;Parent=Msa0415130;Name=Msa0415130-mRNA-1;_AED=0.18;_eAED=0.18;_QI=165|0.66|0.85|1|0.83|0.71|7|202|242 |
| chr3_2 | exon | 61159409 | 61159748 | 61159409 | ID=Msa0415130-mRNA-1:exon:12906;Parent=Msa0415130-mRNA-1 |
| chr3_2 | exon | 61160513 | 61160657 | 61160513 | ID=Msa0415130-mRNA-1:exon:12905;Parent=Msa0415130-mRNA-1 |
| chr3_2 | exon | 61160737 | 61160858 | 61160737 | ID=Msa0415130-mRNA-1:exon:12904;Parent=Msa0415130-mRNA-1 |
| chr3_2 | exon | 61161864 | 61162002 | 61161864 | ID=Msa0415130-mRNA-1:exon:12903;Parent=Msa0415130-mRNA-1 |
| chr3_2 | exon | 61162090 | 61162178 | 61162090 | ID=Msa0415130-mRNA-1:exon:12902;Parent=Msa0415130-mRNA-1 |
| chr3_2 | exon | 61163981 | 61164113 | 61163981 | ID=Msa0415130-mRNA-1:exon:12901;Parent=Msa0415130-mRNA-1 |
| chr3_2 | exon | 61164553 | 61164680 | 61164553 | ID=Msa0415130-mRNA-1:exon:12900;Parent=Msa0415130-mRNA-1 |
| chr3_2 | five_prime_UTR | 61164553 | 61164680 | 61164553 | ID=Msa0415130-mRNA-1:five_prime_utr;Parent=Msa0415130-mRNA-1 |
| chr3_2 | five_prime_UTR | 61164077 | 61164113 | 61164077 | ID=Msa0415130-mRNA-1:five_prime_utr;Parent=Msa0415130-mRNA-1 |
| chr3_2 | CDS | 61163981 | 61164076 | 61163981 | ID=Msa0415130-mRNA-1:cds;Parent=Msa0415130-mRNA-1 |
| chr3_2 | CDS | 61162090 | 61162178 | 61162090 | ID=Msa0415130-mRNA-1:cds;Parent=Msa0415130-mRNA-1 |
| chr3_2 | CDS | 61161864 | 61162002 | 61161864 | ID=Msa0415130-mRNA-1:cds;Parent=Msa0415130-mRNA-1 |
| chr3_2 | CDS | 61160737 | 61160858 | 61160737 | ID=Msa0415130-mRNA-1:cds;Parent=Msa0415130-mRNA-1 |
| chr3_2 | CDS | 61160513 | 61160657 | 61160513 | ID=Msa0415130-mRNA-1:cds;Parent=Msa0415130-mRNA-1 |
| chr3_2 | CDS | 61159611 | 61159748 | 61159611 | ID=Msa0415130-mRNA-1:cds;Parent=Msa0415130-mRNA-1 |
| chr3_2 | three_prime_UTR | 61159409 | 61159610 | 61159409 | ID=Msa0415130-mRNA-1:three_prime_utr;Parent=Msa0415130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
