Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0367470 | XP_024633571.1 | 77.778 | 234 | 7 | 2 | 4 | 192 | 31 | 264 | 1.53e-115 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0367470 | sp|Q8CGF5|TLCD4_MOUSE | 27.803 | 223 | 118 | 7 | 13 | 192 | 43 | 265 | 5.21e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0367470 | I3SF47 | 77.778 | 234 | 7 | 2 | 4 | 192 | 31 | 264 | 7.30e-116 | 339 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030280 | Msa0367470 | 0.802945 | 4.408258e-49 | -8.615850e-47 |
| Msa0077880 | Msa0367470 | 0.810587 | 1.070196e-50 | -8.615850e-47 |
| Msa0097850 | Msa0367470 | 0.812871 | 3.408655e-51 | -8.615850e-47 |
| Msa0099190 | Msa0367470 | 0.817762 | 2.786464e-52 | -8.615850e-47 |
| Msa0197520 | Msa0367470 | 0.806609 | 7.569599e-50 | -8.615850e-47 |
| Msa0222920 | Msa0367470 | 0.813534 | 2.437652e-51 | -8.615850e-47 |
| Msa0229130 | Msa0367470 | 0.822493 | 2.300171e-53 | -8.615850e-47 |
| Msa0367470 | Msa0415130 | 0.828880 | 7.029323e-55 | -8.615850e-47 |
| Msa0367470 | Msa0460020 | 0.849178 | 3.819295e-60 | -8.615850e-47 |
| Msa0367470 | Msa0616240 | 0.835709 | 1.432710e-56 | -8.615850e-47 |
| Msa0367470 | Msa0619470 | 0.801319 | 9.521793e-49 | -8.615850e-47 |
| Msa0367470 | Msa0619510 | 0.806471 | 8.094413e-50 | -8.615850e-47 |
| Msa0367470 | Msa0699570 | 0.835996 | 1.211628e-56 | -8.615850e-47 |
| Msa0367470 | Msa1022970 | 0.824700 | 7.004179e-54 | -8.615850e-47 |
| Msa0367470 | Msa1073490 | 0.800586 | 1.344366e-48 | -8.615850e-47 |
| Msa0367470 | Msa1150500 | 0.823403 | 1.411734e-53 | -8.615850e-47 |
| Msa0367470 | Msa1208890 | -0.821676 | 3.558105e-53 | -8.615850e-47 |
| Msa0367470 | Msa1245940 | -0.810520 | 1.106678e-50 | -8.615850e-47 |
| Msa0367470 | Msa1253810 | 0.800095 | 1.692571e-48 | -8.615850e-47 |
| Msa0367470 | Msa1259070 | -0.823773 | 1.156551e-53 | -8.615850e-47 |
| Msa0367470 | Msa1400610 | -0.822733 | 2.022762e-53 | -8.615850e-47 |
| Msa0367470 | Msa1465680 | 0.801636 | 8.200542e-49 | -8.615850e-47 |
| Msa0302380 | Msa0367470 | 0.801145 | 1.033951e-48 | -8.615850e-47 |
| Msa0347680 | Msa0367470 | 0.805072 | 1.592776e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0367470 | MtrunA17_Chr3g0108871 | 77.778 | 234 | 7 | 2 | 4 | 192 | 31 | 264 | 1.40e-119 | 339 |
| Msa0367470 | MtrunA17_Chr5g0442461 | 38.865 | 229 | 95 | 2 | 6 | 189 | 46 | 274 | 8.45e-42 | 141 |
| Msa0367470 | MtrunA17_Chr3g0095631 | 50.000 | 70 | 35 | 0 | 82 | 151 | 42 | 111 | 3.53e-20 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0367470 | AT4G10360.1 | 48.485 | 231 | 74 | 2 | 6 | 191 | 31 | 261 | 2.81e-67 | 207 |
| Msa0367470 | AT4G10360.3 | 48.485 | 231 | 74 | 2 | 6 | 191 | 31 | 261 | 2.81e-67 | 207 |
| Msa0367470 | AT4G10360.2 | 48.485 | 231 | 74 | 2 | 6 | 191 | 31 | 261 | 2.81e-67 | 207 |
| Msa0367470 | AT4G19645.2 | 43.478 | 230 | 84 | 4 | 6 | 189 | 39 | 268 | 1.36e-46 | 154 |
| Msa0367470 | AT4G19645.1 | 43.478 | 230 | 84 | 4 | 6 | 189 | 39 | 268 | 1.36e-46 | 154 |
| Msa0367470 | AT4G19645.3 | 43.478 | 230 | 84 | 4 | 6 | 189 | 39 | 268 | 1.36e-46 | 154 |
| Msa0367470 | AT4G19645.5 | 43.478 | 230 | 84 | 4 | 6 | 189 | 39 | 268 | 1.36e-46 | 154 |
| Msa0367470 | AT4G19645.4 | 43.478 | 230 | 84 | 4 | 6 | 189 | 39 | 268 | 1.36e-46 | 154 |
| Msa0367470 | AT1G31300.3 | 39.207 | 227 | 93 | 3 | 6 | 187 | 48 | 274 | 1.26e-39 | 136 |
| Msa0367470 | AT1G31300.1 | 39.207 | 227 | 93 | 3 | 6 | 187 | 48 | 274 | 1.26e-39 | 136 |
| Msa0367470 | AT1G31300.2 | 39.207 | 227 | 93 | 3 | 6 | 187 | 48 | 274 | 1.26e-39 | 136 |
Find 48 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAGTAGAATTGTATATT+TGG | 0.201744 | 3_1:-63132136 | Msa0367470:three_prime_UTR |
| TATCAGTGATGAATTTATTT+TGG | 0.229458 | 3_1:-63132335 | Msa0367470:CDS |
| TTTCTCAGATTCAGTATTAT+CGG | 0.278111 | 3_1:-63134522 | Msa0367470:intron |
| AGCACATATCTACATATTAA+TGG | 0.324767 | 3_1:-63133410 | Msa0367470:CDS |
| AATGGTGTTGCATTGTTCTT+CGG | 0.349885 | 3_1:-63133219 | Msa0367470:CDS |
| AATGGGTTTCTACAGCTTGC+TGG | 0.354123 | 3_1:-63132373 | Msa0367470:CDS |
| ATGGTGTTGCATTGTTCTTC+GGG | 0.356765 | 3_1:-63133218 | Msa0367470:CDS |
| TGATAATGCTAAAAGAATTC+TGG | 0.359201 | 3_1:-63134902 | Msa0367470:five_prime_UTR |
| AGAGCTCAAAACTTTACATC+TGG | 0.413236 | 3_1:-63133242 | Msa0367470:CDS |
| TCCCTTACTTCAGGTGAAGC+AGG | 0.413748 | 3_1:-63132403 | Msa0367470:intron |
| CTTGACCACTTAGCAAAGAT+TGG | 0.422808 | 3_1:+63133431 | None:intergenic |
| TACAGAAAATTGAGCAGTGC+TGG | 0.425806 | 3_1:-63134770 | Msa0367470:CDS |
| ATCAACTAATTCAGATAAGT+TGG | 0.431092 | 3_1:+63134921 | None:intergenic |
| GATCTTATCAGATCTATTCA+AGG | 0.436308 | 3_1:-63134585 | Msa0367470:CDS |
| TAACAAGAACAAACTAGAAA+AGG | 0.466552 | 3_1:+63134953 | None:intergenic |
| TAATCACATATACAGGTACT+TGG | 0.468412 | 3_1:-63133280 | Msa0367470:intron |
| GGAAAGTTGAATGGAATAAC+CGG | 0.468796 | 3_1:-63134748 | Msa0367470:intron |
| TGCATTGTTCTTCGGGTGGT+TGG | 0.478507 | 3_1:-63133211 | Msa0367470:intron |
| TACCATCTTAGATTTACAAA+AGG | 0.482453 | 3_1:+63133364 | None:intergenic |
| CAAGAGGTAAAATGAAGTAA+AGG | 0.496123 | 3_1:+63134607 | None:intergenic |
| ATCATCCAATCTTTGCTAAG+TGG | 0.498367 | 3_1:-63133436 | Msa0367470:CDS |
| GTGAAGCAGGTCTTCCCAAT+GGG | 0.505190 | 3_1:-63132390 | Msa0367470:CDS |
| CTGGAAGATTGCCAAGGGTA+TGG | 0.506373 | 3_1:-63132310 | Msa0367470:CDS |
| GATCGAGATCATCAAGTAGC+AGG | 0.520182 | 3_1:+63132236 | None:intergenic |
| TTTAGTTCACGGTTGTTCAC+CGG | 0.524499 | 3_1:-63134794 | Msa0367470:CDS |
| CATTTAAGATTCTACACCAC+GGG | 0.532310 | 3_1:-63133474 | Msa0367470:intron |
| AGCAAGCTGTAGAAACCCAT+TGG | 0.536058 | 3_1:+63132375 | None:intergenic |
| TACAAAAGGAGTTGTGCCCT+CGG | 0.541149 | 3_1:+63133378 | None:intergenic |
| TCTATTCAAGGATGATTCAC+AGG | 0.545257 | 3_1:-63134573 | Msa0367470:CDS |
| ACTTGATGATCTCGATCAAA+CGG | 0.551520 | 3_1:-63132230 | Msa0367470:three_prime_UTR |
| TCAAAACTTTACATCTGGAA+TGG | 0.555641 | 3_1:-63133237 | Msa0367470:CDS |
| GCAAGCTGTAGAAACCCATT+GGG | 0.556330 | 3_1:+63132376 | None:intergenic |
| GGTGAAGCAGGTCTTCCCAA+TGG | 0.558925 | 3_1:-63132391 | Msa0367470:CDS |
| ACAGAAAATTGAGCAGTGCT+GGG | 0.571297 | 3_1:-63134769 | Msa0367470:CDS |
| TACAGGTACTTGGACACCGC+CGG | 0.578821 | 3_1:-63133270 | Msa0367470:intron |
| TTGGTTCTGGAAGATTGCCA+AGG | 0.591420 | 3_1:-63132316 | Msa0367470:CDS |
| GCAGTGCTGGGAAAGTTGAA+TGG | 0.591925 | 3_1:-63134757 | Msa0367470:CDS |
| TGGTTCTGGAAGATTGCCAA+GGG | 0.598928 | 3_1:-63132315 | Msa0367470:CDS |
| GGGTTTCTACAGCTTGCTGG+TGG | 0.612901 | 3_1:-63132370 | Msa0367470:CDS |
| ATAGATCTGATAAGATCAAG+AGG | 0.617315 | 3_1:+63134591 | None:intergenic |
| TCATCAAGTAGCAGGAAATG+TGG | 0.633556 | 3_1:+63132244 | None:intergenic |
| TCAAGTAGCAGGAAATGTGG+TGG | 0.634332 | 3_1:+63132247 | None:intergenic |
| GTGTTGCATTGTTCTTCGGG+TGG | 0.657137 | 3_1:-63133215 | Msa0367470:CDS |
| TCATTTAAGATTCTACACCA+CGG | 0.669399 | 3_1:-63133475 | Msa0367470:intron |
| TTCATCACTGATAACACAGG+AGG | 0.672119 | 3_1:+63132345 | None:intergenic |
| AAATTCATCACTGATAACAC+AGG | 0.689682 | 3_1:+63132342 | None:intergenic |
| TTGAAAACAACGATAGCCCG+TGG | 0.708343 | 3_1:+63133458 | None:intergenic |
| TGTTGATTGCAACTGTACTG+AGG | 0.708807 | 3_1:+63132196 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAATATAAAAGTCAATTA+TGG | + | chr3_1:63132350-63132369 | None:intergenic | 15.0% |
| !! | TTTACATGTTAAATAGATTT+AGG | - | chr3_1:63132582-63132601 | Msa0367470:intron | 15.0% |
| !!! | AACATTTTTACAAAGTAAAT+AGG | + | chr3_1:63133095-63133114 | None:intergenic | 15.0% |
| !! | TCATAATTAAAAGTGAAAAT+AGG | + | chr3_1:63133132-63133151 | None:intergenic | 15.0% |
| !!! | TTGTTTTTAATGATTTGTAT+AGG | - | chr3_1:63133246-63133265 | Msa0367470:CDS | 15.0% |
| !! | GTGAAAAAGATAATTAAAAA+AGG | - | chr3_1:63133999-63134018 | Msa0367470:intron | 15.0% |
| !! | ATTAAAAAAGGATTATCAAA+AGG | - | chr3_1:63134011-63134030 | Msa0367470:intron | 15.0% |
| !! | TTAAAAAAGGATTATCAAAA+GGG | - | chr3_1:63134012-63134031 | Msa0367470:intron | 15.0% |
| !! | AAAAATTATTCAATTCAGTA+AGG | + | chr3_1:63134921-63134940 | None:intergenic | 15.0% |
| !!! | ATTTTTAATGATCTTCTTGA+AGG | - | chr3_1:63132194-63132213 | Msa0367470:three_prime_UTR | 20.0% |
| !!! | TTTATTTCATTTTTCAATGC+AGG | - | chr3_1:63132370-63132389 | Msa0367470:CDS | 20.0% |
| !!! | TTATTTCATTTTTCAATGCA+GGG | - | chr3_1:63132371-63132390 | Msa0367470:CDS | 20.0% |
| !! | TAAATAGATTTAGGCTAAAA+CGG | - | chr3_1:63132591-63132610 | Msa0367470:intron | 20.0% |
| !! | TCTTTAGTAACATTATTCTT+AGG | - | chr3_1:63132907-63132926 | Msa0367470:intron | 20.0% |
| !! | ATGTAAGTCAAAAAGATATT+AGG | - | chr3_1:63133068-63133087 | Msa0367470:intron | 20.0% |
| !! | TGTAAGTCAAAAAGATATTA+GGG | - | chr3_1:63133069-63133088 | Msa0367470:intron | 20.0% |
| !! | ACAAGATATAAATGAAAACA+AGG | + | chr3_1:63133230-63133249 | None:intergenic | 20.0% |
| !! | ATTACTTTAATCACATATAC+AGG | - | chr3_1:63133744-63133763 | Msa0367470:intron | 20.0% |
| !!! | AAATTGAATCTTTTGATGTA+TGG | - | chr3_1:63134293-63134312 | Msa0367470:intron | 20.0% |
| !!! | ATTTTTTAATATGATGCACA+CGG | - | chr3_1:63134408-63134427 | Msa0367470:intron | 20.0% |
| !!! | TATCAGTGATGAATTTATTT+TGG | - | chr3_1:63134696-63134715 | Msa0367470:intron | 20.0% |
| !! | ATTCAGTAGAATTGTATATT+TGG | - | chr3_1:63134895-63134914 | Msa0367470:five_prime_UTR | 20.0% |
| ! | TAACAAGAACAAACTAGAAA+AGG | + | chr3_1:63132081-63132100 | None:intergenic | 25.0% |
| ! | ATCAACTAATTCAGATAAGT+TGG | + | chr3_1:63132113-63132132 | None:intergenic | 25.0% |
| !! | TGATAATGCTAAAAGAATTC+TGG | - | chr3_1:63132129-63132148 | Msa0367470:three_prime_UTR | 25.0% |
| ! | AAACAGAAATCGTTATACAA+AGG | + | chr3_1:63132314-63132333 | None:intergenic | 25.0% |
| !!! | TATTTCATTTTTCAATGCAG+GGG | - | chr3_1:63132372-63132391 | Msa0367470:CDS | 25.0% |
| ! | TTTCTCAGATTCAGTATTAT+CGG | - | chr3_1:63132509-63132528 | Msa0367470:intron | 25.0% |
| !! | CTATAATACAATCACCTTTT+AGG | + | chr3_1:63132650-63132669 | None:intergenic | 25.0% |
| ! | AGATTGAAATCTAACAGAAA+CGG | + | chr3_1:63132846-63132865 | None:intergenic | 25.0% |
| ! | AACATTATTCTTAGGCATTA+TGG | - | chr3_1:63132915-63132934 | Msa0367470:intron | 25.0% |
| ! | GGAAAGAATGATTATATAGT+TGG | - | chr3_1:63132936-63132955 | Msa0367470:intron | 25.0% |
| !!! | CCTTGATTTCATTTTATTTC+CGG | + | chr3_1:63133342-63133361 | None:intergenic | 25.0% |
| ! | GAAATAAAATGAAATCAAGG+TGG | - | chr3_1:63133342-63133361 | Msa0367470:intron | 25.0% |
| ! | ACATGAACAAAAGTAGAAAA+CGG | - | chr3_1:63133387-63133406 | Msa0367470:CDS | 25.0% |
| ! | AAAAAACTTAATGACCAGTT+TGG | + | chr3_1:63133422-63133441 | None:intergenic | 25.0% |
| ! | AGCACATATCTACATATTAA+TGG | - | chr3_1:63133621-63133640 | Msa0367470:intron | 25.0% |
| ! | TACCATCTTAGATTTACAAA+AGG | + | chr3_1:63133670-63133689 | None:intergenic | 25.0% |
| !!! | TTATGGTCATGCTTTTATTT+TGG | - | chr3_1:63133908-63133927 | Msa0367470:intron | 25.0% |
| ! | GTTCTCAATGAAAAACATAA+AGG | + | chr3_1:63134330-63134349 | None:intergenic | 25.0% |
| !! | TTATGTTTTTCATTGAGAAC+TGG | - | chr3_1:63134330-63134349 | Msa0367470:intron | 25.0% |
| ! | TTCACTAGATTACAATCATA+GGG | + | chr3_1:63134591-63134610 | None:intergenic | 25.0% |
| ! | ATTCACTAGATTACAATCAT+AGG | + | chr3_1:63134592-63134611 | None:intergenic | 25.0% |
| !!! | TGATGAATTTATTTTGGTTC+TGG | - | chr3_1:63134702-63134721 | Msa0367470:intron | 25.0% |
| TAAAGGATGCAAAAAAAGCA+TGG | + | chr3_1:63132410-63132429 | None:intergenic | 30.0% | |
| CAAGAGGTAAAATGAAGTAA+AGG | + | chr3_1:63132427-63132446 | None:intergenic | 30.0% | |
| ATAGATCTGATAAGATCAAG+AGG | + | chr3_1:63132443-63132462 | None:intergenic | 30.0% | |
| GATCTTATCAGATCTATTCA+AGG | - | chr3_1:63132446-63132465 | Msa0367470:intron | 30.0% | |
| ATAAACTATGCATGCCTAAA+AGG | - | chr3_1:63132633-63132652 | Msa0367470:intron | 30.0% | |
| CATGATAAGTTTACCATCAA+TGG | - | chr3_1:63132748-63132767 | Msa0367470:intron | 30.0% | |
| TATATCTCTTCTTCCATTGA+TGG | + | chr3_1:63132764-63132783 | None:intergenic | 30.0% | |
| GATTGAAATCTAACAGAAAC+GGG | + | chr3_1:63132845-63132864 | None:intergenic | 30.0% | |
| GATATCAAACAAGAAGAAAC+AGG | + | chr3_1:63132870-63132889 | None:intergenic | 30.0% | |
| !! | AGGTTATTTTCTAACAGATC+TGG | - | chr3_1:63133003-63133022 | Msa0367470:intron | 30.0% |
| !! | TATTTGGAATTTTCCAGCTT+TGG | - | chr3_1:63133033-63133052 | Msa0367470:intron | 30.0% |
| !! | ATTTGGAATTTTCCAGCTTT+GGG | - | chr3_1:63133034-63133053 | Msa0367470:intron | 30.0% |
| AAAGCAGGTAAATGAAAACA+AGG | + | chr3_1:63133163-63133182 | None:intergenic | 30.0% | |
| ! | TTAGACAAAACTTTGAAAGC+AGG | + | chr3_1:63133178-63133197 | None:intergenic | 30.0% |
| !! | CATTTTATTTCCGGTGTTTT+TGG | + | chr3_1:63133333-63133352 | None:intergenic | 30.0% |
| CCGGAAATAAAATGAAATCA+AGG | - | chr3_1:63133339-63133358 | Msa0367470:intron | 30.0% | |
| TAGTTAGCATAACTAAGATG+TGG | + | chr3_1:63133529-63133548 | None:intergenic | 30.0% | |
| ! | TCATTTAAGATTCTACACCA+CGG | - | chr3_1:63133556-63133575 | Msa0367470:intron | 30.0% |
| ! | CTCCTTTTGTAAATCTAAGA+TGG | - | chr3_1:63133665-63133684 | Msa0367470:intron | 30.0% |
| !! | AATTTGCTTGCTTGTACTTT+TGG | - | chr3_1:63133709-63133728 | Msa0367470:intron | 30.0% |
| TAATCACATATACAGGTACT+TGG | - | chr3_1:63133751-63133770 | Msa0367470:intron | 30.0% | |
| TCAAAACTTTACATCTGGAA+TGG | - | chr3_1:63133794-63133813 | Msa0367470:intron | 30.0% | |
| ATAACATAAGCAACTTCTTC+AGG | + | chr3_1:63133892-63133911 | None:intergenic | 30.0% | |
| TGAAGAAGTTGCTTATGTTA+TGG | - | chr3_1:63133891-63133910 | Msa0367470:intron | 30.0% | |
| !!! | CTTCATTTAGTTTTCTCTTC+TGG | - | chr3_1:63133937-63133956 | Msa0367470:intron | 30.0% |
| ! | TCTGGTTATGAATGATGTTT+TGG | - | chr3_1:63133955-63133974 | Msa0367470:intron | 30.0% |
| TCTCATCTAGTAAGAAACAT+AGG | - | chr3_1:63134105-63134124 | Msa0367470:intron | 30.0% | |
| ! | GAGTTAAAAGTACAAAATGC+TGG | - | chr3_1:63134211-63134230 | Msa0367470:intron | 30.0% |
| !!! | TTTCATTGAGAACTGGTTTT+TGG | - | chr3_1:63134337-63134356 | Msa0367470:intron | 30.0% |
| ATATCAAATACGATGCCATT+TGG | - | chr3_1:63134374-63134393 | Msa0367470:intron | 30.0% | |
| AAATACACACAAAGACCAAA+TGG | + | chr3_1:63134392-63134411 | None:intergenic | 30.0% | |
| TCTTAAATCTATATGTGACG+AGG | + | chr3_1:63134564-63134583 | None:intergenic | 30.0% | |
| AAATTCATCACTGATAACAC+AGG | + | chr3_1:63134692-63134711 | None:intergenic | 30.0% | |
| ! | ACTGCTCAATTTTCTGTATC+CGG | + | chr3_1:63132259-63132278 | None:intergenic | 35.0% |
| GGAAAGTTGAATGGAATAAC+CGG | - | chr3_1:63132283-63132302 | Msa0367470:CDS | 35.0% | |
| !! | TCGTTATACAAAGGCATTAC+CGG | + | chr3_1:63132305-63132324 | None:intergenic | 35.0% |
| TCTATTCAAGGATGATTCAC+AGG | - | chr3_1:63132458-63132477 | Msa0367470:intron | 35.0% | |
| ATACACCACTAGCATATGAT+GGG | + | chr3_1:63132813-63132832 | None:intergenic | 35.0% | |
| AATACACCACTAGCATATGA+TGG | + | chr3_1:63132814-63132833 | None:intergenic | 35.0% | |
| GAGAACTGTTCAAAGAATGA+TGG | + | chr3_1:63132980-63132999 | None:intergenic | 35.0% | |
| TTCTTTGAACAGTTCTCTAC+AGG | - | chr3_1:63132983-63133002 | Msa0367470:intron | 35.0% | |
| !!! | CAGATCTGGCTTTTGTTATT+TGG | - | chr3_1:63133017-63133036 | Msa0367470:intron | 35.0% |
| ! | CATTTAAGATTCTACACCAC+GGG | - | chr3_1:63133557-63133576 | Msa0367470:intron | 35.0% |
| ATCATCCAATCTTTGCTAAG+TGG | - | chr3_1:63133595-63133614 | Msa0367470:intron | 35.0% | |
| ! | ATTAATGGTTCTTTTCACCG+AGG | - | chr3_1:63133636-63133655 | Msa0367470:intron | 35.0% |
| ! | TTAATGGTTCTTTTCACCGA+GGG | - | chr3_1:63133637-63133656 | Msa0367470:intron | 35.0% |
| !!! | AAGTTTTGAGCTCTTAAGAC+CGG | + | chr3_1:63133783-63133802 | None:intergenic | 35.0% |
| AGAGCTCAAAACTTTACATC+TGG | - | chr3_1:63133789-63133808 | Msa0367470:intron | 35.0% | |
| !! | AATGGTGTTGCATTGTTCTT+CGG | - | chr3_1:63133812-63133831 | Msa0367470:intron | 35.0% |
| GGTACTGTCTATTATACTCT+TGG | - | chr3_1:63133841-63133860 | Msa0367470:intron | 35.0% | |
| AACTTCTTCAGGTACTACAA+TGG | + | chr3_1:63133881-63133900 | None:intergenic | 35.0% | |
| TACATAACATAGAACCTGAC+TGG | + | chr3_1:63134172-63134191 | None:intergenic | 35.0% | |
| GTCAGGTTCTATGTTATGTA+TGG | - | chr3_1:63134172-63134191 | Msa0367470:intron | 35.0% | |
| !! | AAGTACAAAATGCTGGTTCT+CGG | - | chr3_1:63134218-63134237 | Msa0367470:intron | 35.0% |
| ! | ACTGTTTTCATTTATCCTGC+AGG | - | chr3_1:63134458-63134477 | Msa0367470:intron | 35.0% |
| ! | TGTTCTTGTTTACACACATG+TGG | - | chr3_1:63134502-63134521 | Msa0367470:intron | 35.0% |
| !! | AACTTTTTCTCCCTTACTTC+AGG | - | chr3_1:63134619-63134638 | Msa0367470:CDS | 35.0% |
| ! | ACTTGATGATCTCGATCAAA+CGG | - | chr3_1:63134801-63134820 | Msa0367470:CDS | 35.0% |
| !!! | TGACTGCTGCTTTTAGTTCA+CGG | - | chr3_1:63132226-63132245 | Msa0367470:three_prime_UTR | 40.0% |
| ! | TTTAGTTCACGGTTGTTCAC+CGG | - | chr3_1:63132237-63132256 | Msa0367470:three_prime_UTR | 40.0% |
| TACAGAAAATTGAGCAGTGC+TGG | - | chr3_1:63132261-63132280 | Msa0367470:exon | 40.0% | |
| ACAGAAAATTGAGCAGTGCT+GGG | - | chr3_1:63132262-63132281 | Msa0367470:exon | 40.0% | |
| ATAGACCCATCATATGCTAG+TGG | - | chr3_1:63132805-63132824 | Msa0367470:intron | 40.0% | |
| CTATGCTTCACCAAAAACAC+CGG | - | chr3_1:63133320-63133339 | Msa0367470:intron | 40.0% | |
| AACGGTTTCTCAAACCAAAC+TGG | - | chr3_1:63133405-63133424 | Msa0367470:CDS | 40.0% | |
| CTTGACCACTTAGCAAAGAT+TGG | + | chr3_1:63133603-63133622 | None:intergenic | 40.0% | |
| !! | ATGGTGTTGCATTGTTCTTC+GGG | - | chr3_1:63133813-63133832 | Msa0367470:intron | 40.0% |
| TAAGAAACATAGGCAGCGTT+TGG | - | chr3_1:63134115-63134134 | Msa0367470:intron | 40.0% | |
| GTATGGCGCAAGTTAAAATC+AGG | - | chr3_1:63134189-63134208 | Msa0367470:intron | 40.0% | |
| CGTGCAAACCTCTTCAAAAT+GGG | + | chr3_1:63134529-63134548 | None:intergenic | 40.0% | |
| TTCATCACTGATAACACAGG+AGG | + | chr3_1:63134689-63134708 | None:intergenic | 40.0% | |
| !! | AAGAGTTTTGACCATACCCT+TGG | + | chr3_1:63134735-63134754 | None:intergenic | 40.0% |
| TCATCAAGTAGCAGGAAATG+TGG | + | chr3_1:63134790-63134809 | None:intergenic | 40.0% | |
| ! | TGTTGATTGCAACTGTACTG+AGG | + | chr3_1:63134838-63134857 | None:intergenic | 40.0% |
| CTAAAACGGTACGCATGAGA+GGG | - | chr3_1:63132605-63132624 | Msa0367470:intron | 45.0% | |
| TAAAACGGTACGCATGAGAG+GGG | - | chr3_1:63132606-63132625 | Msa0367470:intron | 45.0% | |
| !!! | TGGAATTTTCCAGCTTTGGG+AGG | - | chr3_1:63133037-63133056 | Msa0367470:intron | 45.0% |
| !!! | TTTTCCAGCTTTGGGAGGTT+TGG | - | chr3_1:63133042-63133061 | Msa0367470:intron | 45.0% |
| TATTCCAAACCTCCCAAAGC+TGG | + | chr3_1:63133049-63133068 | None:intergenic | 45.0% | |
| !!! | CGGTGTTTTTGGTGAAGCAT+AGG | + | chr3_1:63133322-63133341 | None:intergenic | 45.0% |
| TTGAAAACAACGATAGCCCG+TGG | + | chr3_1:63133576-63133595 | None:intergenic | 45.0% | |
| TACAAAAGGAGTTGTGCCCT+CGG | + | chr3_1:63133656-63133675 | None:intergenic | 45.0% | |
| ! | TTTTGAGCTCTTAAGACCGG+CGG | + | chr3_1:63133780-63133799 | None:intergenic | 45.0% |
| ATAGGCAGCGTTTGGTAGAA+AGG | - | chr3_1:63134123-63134142 | Msa0367470:intron | 45.0% | |
| GAGAAAACAGATCACCAGTC+AGG | - | chr3_1:63134155-63134174 | Msa0367470:intron | 45.0% | |
| CATTTATCCTGCAGGTAGCA+AGG | - | chr3_1:63134466-63134485 | Msa0367470:intron | 45.0% | |
| AGAAAATCCTTGCTACCTGC+AGG | + | chr3_1:63134476-63134495 | None:intergenic | 45.0% | |
| !! | CATGTGGACCCATTTTGAAG+AGG | - | chr3_1:63134518-63134537 | Msa0367470:intron | 45.0% |
| GCGTGCAAACCTCTTCAAAA+TGG | + | chr3_1:63134530-63134549 | None:intergenic | 45.0% | |
| ACCTGCTTCACCTGAAGTAA+GGG | + | chr3_1:63134632-63134651 | None:intergenic | 45.0% | |
| GCAAGCTGTAGAAACCCATT+GGG | + | chr3_1:63134658-63134677 | None:intergenic | 45.0% | |
| AGCAAGCTGTAGAAACCCAT+TGG | + | chr3_1:63134659-63134678 | None:intergenic | 45.0% | |
| ! | AATGGGTTTCTACAGCTTGC+TGG | - | chr3_1:63134658-63134677 | Msa0367470:intron | 45.0% |
| !! | TTGGTTCTGGAAGATTGCCA+AGG | - | chr3_1:63134715-63134734 | Msa0367470:intron | 45.0% |
| !! | TGGTTCTGGAAGATTGCCAA+GGG | - | chr3_1:63134716-63134735 | Msa0367470:intron | 45.0% |
| TCAAGTAGCAGGAAATGTGG+TGG | + | chr3_1:63134787-63134806 | None:intergenic | 45.0% | |
| GATCGAGATCATCAAGTAGC+AGG | + | chr3_1:63134798-63134817 | None:intergenic | 45.0% | |
| ! | GCAGTGCTGGGAAAGTTGAA+TGG | - | chr3_1:63132274-63132293 | Msa0367470:exon | 50.0% |
| GCTAAAACGGTACGCATGAG+AGG | - | chr3_1:63132604-63132623 | Msa0367470:intron | 50.0% | |
| GTGTTGCATTGTTCTTCGGG+TGG | - | chr3_1:63133816-63133835 | Msa0367470:intron | 50.0% | |
| TGCATTGTTCTTCGGGTGGT+TGG | - | chr3_1:63133820-63133839 | Msa0367470:intron | 50.0% | |
| TCCCTTACTTCAGGTGAAGC+AGG | - | chr3_1:63134628-63134647 | Msa0367470:CDS | 50.0% | |
| GACCTGCTTCACCTGAAGTA+AGG | + | chr3_1:63134633-63134652 | None:intergenic | 50.0% | |
| GTGAAGCAGGTCTTCCCAAT+GGG | - | chr3_1:63134641-63134660 | Msa0367470:CDS | 50.0% | |
| CTGGAAGATTGCCAAGGGTA+TGG | - | chr3_1:63134721-63134740 | Msa0367470:intron | 50.0% | |
| TACAGGTACTTGGACACCGC+CGG | - | chr3_1:63133761-63133780 | Msa0367470:intron | 55.0% | |
| GGTGAAGCAGGTCTTCCCAA+TGG | - | chr3_1:63134640-63134659 | Msa0367470:CDS | 55.0% | |
| !! | GGGTTTCTACAGCTTGCTGG+TGG | - | chr3_1:63134661-63134680 | Msa0367470:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 63132071 | 63134982 | 63132071 | ID=Msa0367470;Name=Msa0367470 |
| chr3_1 | mRNA | 63132071 | 63134982 | 63132071 | ID=Msa0367470-mRNA-1;Parent=Msa0367470;Name=Msa0367470-mRNA-1;_AED=0.13;_eAED=0.13;_QI=130|0.5|1|1|0.75|1|5|204|192 |
| chr3_1 | exon | 63132071 | 63132412 | 63132071 | ID=Msa0367470-mRNA-1:exon:12412;Parent=Msa0367470-mRNA-1 |
| chr3_1 | exon | 63133212 | 63133287 | 63133212 | ID=Msa0367470-mRNA-1:exon:12411;Parent=Msa0367470-mRNA-1 |
| chr3_1 | exon | 63133367 | 63133488 | 63133367 | ID=Msa0367470-mRNA-1:exon:12410;Parent=Msa0367470-mRNA-1 |
| chr3_1 | exon | 63134523 | 63134661 | 63134523 | ID=Msa0367470-mRNA-1:exon:12409;Parent=Msa0367470-mRNA-1 |
| chr3_1 | exon | 63134749 | 63134982 | 63134749 | ID=Msa0367470-mRNA-1:exon:12408;Parent=Msa0367470-mRNA-1 |
| chr3_1 | five_prime_UTR | 63134853 | 63134982 | 63134853 | ID=Msa0367470-mRNA-1:five_prime_utr;Parent=Msa0367470-mRNA-1 |
| chr3_1 | CDS | 63134749 | 63134852 | 63134749 | ID=Msa0367470-mRNA-1:cds;Parent=Msa0367470-mRNA-1 |
| chr3_1 | CDS | 63134523 | 63134661 | 63134523 | ID=Msa0367470-mRNA-1:cds;Parent=Msa0367470-mRNA-1 |
| chr3_1 | CDS | 63133367 | 63133488 | 63133367 | ID=Msa0367470-mRNA-1:cds;Parent=Msa0367470-mRNA-1 |
| chr3_1 | CDS | 63133212 | 63133287 | 63133212 | ID=Msa0367470-mRNA-1:cds;Parent=Msa0367470-mRNA-1 |
| chr3_1 | CDS | 63132275 | 63132412 | 63132275 | ID=Msa0367470-mRNA-1:cds;Parent=Msa0367470-mRNA-1 |
| chr3_1 | three_prime_UTR | 63132071 | 63132274 | 63132071 | ID=Msa0367470-mRNA-1:three_prime_utr;Parent=Msa0367470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
