Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460020 | XP_024633571.1 | 81.648 | 267 | 21 | 2 | 1 | 242 | 1 | 264 | 1.00e-140 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460020 | sp|Q6PGS5|TLC4B_XENLA | 28.980 | 245 | 134 | 7 | 21 | 235 | 11 | 245 | 7.71e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460020 | I3SF47 | 81.648 | 267 | 21 | 2 | 1 | 242 | 1 | 264 | 4.80e-141 | 405 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0115390 | Msa0460020 | 0.813629 | 2.323091e-51 | -8.615850e-47 |
| Msa0229130 | Msa0460020 | 0.874601 | 5.947730e-68 | -8.615850e-47 |
| Msa0367470 | Msa0460020 | 0.849178 | 3.819295e-60 | -8.615850e-47 |
| Msa0415130 | Msa0460020 | 0.896633 | 3.058244e-76 | -8.615850e-47 |
| Msa0421780 | Msa0460020 | -0.801144 | 1.034057e-48 | -8.615850e-47 |
| Msa0460020 | Msa0586520 | -0.802561 | 5.291337e-49 | -8.615850e-47 |
| Msa0460020 | Msa0616240 | 0.821098 | 4.836330e-53 | -8.615850e-47 |
| Msa0460020 | Msa0699570 | 0.821292 | 4.363208e-53 | -8.615850e-47 |
| Msa0460020 | Msa1061720 | 0.813469 | 2.519418e-51 | -8.615850e-47 |
| Msa0460020 | Msa1150500 | 0.827663 | 1.381290e-54 | -8.615850e-47 |
| Msa0460020 | Msa1208890 | -0.831889 | 1.292141e-55 | -8.615850e-47 |
| Msa0460020 | Msa1245940 | -0.823651 | 1.234963e-53 | -8.615850e-47 |
| Msa0460020 | Msa1259070 | -0.824748 | 6.822696e-54 | -8.615850e-47 |
| Msa0460020 | Msa1400610 | -0.832241 | 1.057935e-55 | -8.615850e-47 |
| Msa0242680 | Msa0460020 | 0.803925 | 2.761886e-49 | -8.615850e-47 |
| Msa0347680 | Msa0460020 | 0.817426 | 3.317432e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460020 | MtrunA17_Chr3g0108871 | 81.648 | 267 | 21 | 2 | 1 | 242 | 1 | 264 | 9.24e-145 | 405 |
| Msa0460020 | MtrunA17_Chr5g0442461 | 40.244 | 246 | 113 | 3 | 22 | 239 | 35 | 274 | 2.27e-44 | 150 |
| Msa0460020 | MtrunA17_Chr3g0095631 | 41.837 | 98 | 49 | 1 | 109 | 198 | 42 | 139 | 1.00e-20 | 85.1 |
| Msa0460020 | MtrunA17_Chr3g0095641 | 37.500 | 88 | 55 | 0 | 22 | 109 | 35 | 122 | 3.25e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460020 | AT4G10360.1 | 47.876 | 259 | 105 | 3 | 8 | 241 | 8 | 261 | 5.42e-72 | 221 |
| Msa0460020 | AT4G10360.3 | 47.876 | 259 | 105 | 3 | 8 | 241 | 8 | 261 | 5.42e-72 | 221 |
| Msa0460020 | AT4G10360.2 | 47.876 | 259 | 105 | 3 | 8 | 241 | 8 | 261 | 5.42e-72 | 221 |
| Msa0460020 | AT4G19645.2 | 43.443 | 244 | 109 | 3 | 22 | 239 | 28 | 268 | 2.59e-49 | 163 |
| Msa0460020 | AT4G19645.1 | 43.443 | 244 | 109 | 3 | 22 | 239 | 28 | 268 | 2.59e-49 | 163 |
| Msa0460020 | AT4G19645.3 | 43.443 | 244 | 109 | 3 | 22 | 239 | 28 | 268 | 2.59e-49 | 163 |
| Msa0460020 | AT4G19645.5 | 43.443 | 244 | 109 | 3 | 22 | 239 | 28 | 268 | 2.59e-49 | 163 |
| Msa0460020 | AT4G19645.4 | 43.443 | 244 | 109 | 3 | 22 | 239 | 28 | 268 | 2.59e-49 | 163 |
| Msa0460020 | AT1G31300.3 | 38.934 | 244 | 115 | 3 | 22 | 237 | 37 | 274 | 1.08e-42 | 146 |
| Msa0460020 | AT1G31300.1 | 38.934 | 244 | 115 | 3 | 22 | 237 | 37 | 274 | 1.08e-42 | 146 |
| Msa0460020 | AT1G31300.2 | 38.934 | 244 | 115 | 3 | 22 | 237 | 37 | 274 | 1.08e-42 | 146 |
Find 54 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAGTAGAATTGTATATT+TGG | 0.201744 | 3_3:+57019353 | Msa0460020:three_prime_UTR |
| TATCAGTGATGAATTTATTT+TGG | 0.229458 | 3_3:+57019156 | Msa0460020:CDS |
| GCCAAGAAACCAAAAGAAAA+AGG | 0.303856 | 3_3:-57014665 | None:intergenic |
| AGAGGAAAAGAGTGTGTTAA+TGG | 0.309691 | 3_3:-57014126 | None:intergenic |
| AGCACATATCTACATATTAA+TGG | 0.324767 | 3_3:+57018047 | Msa0460020:CDS |
| TGAAGAAGTTGCTTATCTTA+TGG | 0.336391 | 3_3:+57018315 | Msa0460020:CDS |
| AATGGTGTTGCATTGTTCTT+CGG | 0.349885 | 3_3:+57018238 | Msa0460020:CDS |
| ACAGACCTGAGCAGAAAATA+AGG | 0.351463 | 3_3:-57014160 | None:intergenic |
| ATGGTGTTGCATTGTTCTTC+GGG | 0.356765 | 3_3:+57018239 | Msa0460020:CDS |
| TTTCAACAAGTGGGGTTGAA+TGG | 0.371082 | 3_3:+57014637 | Msa0460020:exon |
| CTTGACCACTTAGCAAAGAT+TGG | 0.384356 | 3_3:-57018026 | None:intergenic |
| TTTCTCAAATTCAGTATTGT+CGG | 0.391339 | 3_3:+57017001 | Msa0460020:CDS |
| AATGGGTTTCTACAGCTTGT+TGG | 0.403889 | 3_3:+57019118 | Msa0460020:CDS |
| AGAGCTCAAAACTTTACATC+TGG | 0.413236 | 3_3:+57018215 | Msa0460020:CDS |
| TCCCCTACTTCAGGTGAAGC+AGG | 0.423119 | 3_3:+57019088 | Msa0460020:intron |
| TACAGAAAATTGAGCAGTGC+TGG | 0.425806 | 3_3:+57016753 | Msa0460020:CDS |
| ATAAGATAAGCAACTTCTTC+AGG | 0.449556 | 3_3:-57018313 | None:intergenic |
| TAATCACATATACAGGTACT+TGG | 0.468412 | 3_3:+57018177 | Msa0460020:intron |
| GGAAAGTTGAATGGAATAAC+CGG | 0.468796 | 3_3:+57016775 | Msa0460020:CDS |
| TACCATCTTAGATTAACAAA+AGG | 0.476978 | 3_3:-57018093 | None:intergenic |
| ATTATCCAATCTTTGCTAAG+TGG | 0.477430 | 3_3:+57018021 | Msa0460020:CDS |
| TGCATTGTTCTTCGGGTGGT+TGG | 0.478507 | 3_3:+57018246 | Msa0460020:CDS |
| CAAGAGGTAAAATGAAGTAA+AGG | 0.496123 | 3_3:-57016916 | None:intergenic |
| CTCAAAGCAAAGAAATTCAA+TGG | 0.501598 | 3_3:+57014690 | Msa0460020:CDS |
| GTGAAGCAGGTCTTCCCAAT+GGG | 0.505190 | 3_3:+57019101 | Msa0460020:CDS |
| CTGGAAGATTGCCAAGGGTA+TGG | 0.506373 | 3_3:+57019181 | Msa0460020:CDS |
| TTTAGTTCACGGTTGTTCAT+CGG | 0.516483 | 3_3:+57016729 | Msa0460020:CDS |
| TTGATCGATCATCAAGTAGC+AGG | 0.528304 | 3_3:-57019255 | None:intergenic |
| CATTTAAGGTTCTACACCAC+GGG | 0.531024 | 3_3:+57017983 | Msa0460020:intron |
| AACAAGCTGTAGAAACCCAT+TGG | 0.539360 | 3_3:-57019116 | None:intergenic |
| GGGTTTCTACAGCTTGTTGG+TGG | 0.540026 | 3_3:+57019121 | Msa0460020:CDS |
| CTACTTGATGATCGATCAAA+CGG | 0.542954 | 3_3:+57019259 | Msa0460020:three_prime_UTR |
| TCAAAACTTTACATCTGGAA+TGG | 0.555641 | 3_3:+57018220 | Msa0460020:CDS |
| GGTGAAGCAGGTCTTCCCAA+TGG | 0.558925 | 3_3:+57019100 | Msa0460020:intron |
| AACAAAAGGAGTTGTGCCCT+CGG | 0.560818 | 3_3:-57018079 | None:intergenic |
| ACAAGCTGTAGAAACCCATT+GGG | 0.561929 | 3_3:-57019115 | None:intergenic |
| ACAGAAAATTGAGCAGTGCT+GGG | 0.571297 | 3_3:+57016754 | Msa0460020:CDS |
| TACAGGTACTTGGACACCGC+CGG | 0.578821 | 3_3:+57018187 | Msa0460020:intron |
| GATCAATCATTCATTATACA+TGG | 0.589723 | 3_3:+57014049 | Msa0460020:five_prime_UTR |
| TTGGTTCTGGAAGATTGCCA+AGG | 0.591420 | 3_3:+57019175 | Msa0460020:CDS |
| GCAGTGCTGGGAAAGTTGAA+TGG | 0.591925 | 3_3:+57016766 | Msa0460020:CDS |
| ATAGATCTGATAAGATCAAG+AGG | 0.592544 | 3_3:-57016932 | None:intergenic |
| TGGTTCTGGAAGATTGCCAA+GGG | 0.598928 | 3_3:+57019176 | Msa0460020:CDS |
| TTGGTACTGTCTATCATACT+CGG | 0.609435 | 3_3:+57018265 | Msa0460020:CDS |
| AATAAGGCGAAAGAGACAAG+AGG | 0.629325 | 3_3:-57014144 | None:intergenic |
| TCAAGTAGCAGGAAATGTGG+TGG | 0.634332 | 3_3:-57019244 | None:intergenic |
| TCATTTAAGGTTCTACACCA+CGG | 0.635801 | 3_3:+57017982 | Msa0460020:intron |
| TCATCAAGTAGCAGGAAATG+TGG | 0.645335 | 3_3:-57019247 | None:intergenic |
| GTGTTGCATTGTTCTTCGGG+TGG | 0.657137 | 3_3:+57018242 | Msa0460020:CDS |
| TTCATCACTGATAACACAGG+AGG | 0.672119 | 3_3:-57019146 | None:intergenic |
| TTGAAAACAACGATAGCCCG+TGG | 0.685510 | 3_3:-57017999 | None:intergenic |
| AAATTCATCACTGATAACAC+AGG | 0.689682 | 3_3:-57019149 | None:intergenic |
| AACTTCTTCAGGTACTACAA+TGG | 0.695859 | 3_3:-57018302 | None:intergenic |
| TGTTGATTGCAACTGTACTG+AGG | 0.708807 | 3_3:-57019293 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAAGACTTTTTTTTTT+TGG | + | chr3_3:57014550-57014569 | Msa0460020:intron | 10.0% |
| !!! | TTAAAAGACTTTTTTTTTTT+GGG | + | chr3_3:57014551-57014570 | Msa0460020:intron | 10.0% |
| !!! | TATCAAATTATTAGTTTTTA+TGG | + | chr3_3:57014918-57014937 | Msa0460020:intron | 10.0% |
| !!! | TATTTATGAAAAACTTTTTT+GGG | - | chr3_3:57015619-57015638 | None:intergenic | 10.0% |
| !!! | ATATTTATGAAAAACTTTTT+TGG | - | chr3_3:57015620-57015639 | None:intergenic | 10.0% |
| !!! | AGTTTTTCTATATTTATAAT+AGG | - | chr3_3:57016141-57016160 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTGGGTATTTTTA+TGG | + | chr3_3:57014562-57014581 | Msa0460020:intron | 15.0% |
| !! | ATAATGATGATATCTATAAT+AGG | + | chr3_3:57015166-57015185 | Msa0460020:intron | 15.0% |
| !! | AGACAATTATATAGAAAATT+AGG | - | chr3_3:57016266-57016285 | None:intergenic | 15.0% |
| !!! | AACATTTTTACAAAGTAAAT+AGG | - | chr3_3:57017551-57017570 | None:intergenic | 15.0% |
| !! | TCATAATTAAAAGTGAAAAT+AGG | - | chr3_3:57017588-57017607 | None:intergenic | 15.0% |
| !!! | TTGTTTTTAATGATTTGTAT+AGG | + | chr3_3:57017702-57017721 | Msa0460020:intron | 15.0% |
| !! | ATTAAAAAAGGATTATCAAA+AGG | + | chr3_3:57018437-57018456 | Msa0460020:intron | 15.0% |
| !! | TTAAAAAAGGATTATCAAAA+GGG | + | chr3_3:57018438-57018457 | Msa0460020:intron | 15.0% |
| !! | AAAAATTATTCAATTCAGTA+AGG | - | chr3_3:57019379-57019398 | None:intergenic | 15.0% |
| !!! | AAGTTTGAAACTTGATTATA+TGG | - | chr3_3:57014246-57014265 | None:intergenic | 20.0% |
| !!! | AAAAAAAGTCTTTTAAAGCA+TGG | - | chr3_3:57014547-57014566 | None:intergenic | 20.0% |
| !! | ACTGAATTATATGTTGTAAA+TGG | + | chr3_3:57014786-57014805 | Msa0460020:intron | 20.0% |
| !! | AGAAATTAATGAACCAAATT+AGG | + | chr3_3:57014822-57014841 | Msa0460020:intron | 20.0% |
| !! | AAGACATAAAAATCCTAATT+TGG | - | chr3_3:57014838-57014857 | None:intergenic | 20.0% |
| !!! | ATTTTTATGTCTTTTATCGA+TGG | + | chr3_3:57014845-57014864 | Msa0460020:intron | 20.0% |
| !!! | CAAATTATTAGTTTTTATGG+TGG | + | chr3_3:57014921-57014940 | Msa0460020:intron | 20.0% |
| !!! | TGATTTTTTTCACATACTTT+AGG | - | chr3_3:57015015-57015034 | None:intergenic | 20.0% |
| !! | TATCAATCATTTATGTAAGT+AGG | + | chr3_3:57015040-57015059 | Msa0460020:intron | 20.0% |
| !! | ATTATAATTGTGTAAGAGAA+TGG | + | chr3_3:57015352-57015371 | Msa0460020:intron | 20.0% |
| !!! | TTTGTTCAAATTACTTTTGA+AGG | - | chr3_3:57015653-57015672 | None:intergenic | 20.0% |
| !! | GTCAATTTAACAATTAAAGA+TGG | + | chr3_3:57015721-57015740 | Msa0460020:intron | 20.0% |
| !! | TAACAATTAAAGATGGTATT+TGG | + | chr3_3:57015728-57015747 | Msa0460020:intron | 20.0% |
| !! | GCATAGAAAAAAAAAATATG+TGG | - | chr3_3:57015782-57015801 | None:intergenic | 20.0% |
| !!! | ATTTTTAATGATCTTCTTGA+AGG | + | chr3_3:57016686-57016705 | Msa0460020:intron | 20.0% |
| !! | GTCAAATTAAAAGTCAATTA+TGG | - | chr3_3:57016842-57016861 | None:intergenic | 20.0% |
| !!! | TTTATTTCATTTTTCAATGC+AGG | + | chr3_3:57016862-57016881 | Msa0460020:intron | 20.0% |
| !!! | TTATTTCATTTTTCAATGCA+GGG | + | chr3_3:57016863-57016882 | Msa0460020:intron | 20.0% |
| !! | AGATTTAAATCTAACAGAAA+CGG | - | chr3_3:57017304-57017323 | None:intergenic | 20.0% |
| !! | TCTTTAGTAACATTATTCTT+AGG | + | chr3_3:57017363-57017382 | Msa0460020:intron | 20.0% |
| !! | ATGTAAGTCAAAAAGATATT+AGG | + | chr3_3:57017524-57017543 | Msa0460020:intron | 20.0% |
| !! | TGTAAGTCAAAAAGATATTA+GGG | + | chr3_3:57017525-57017544 | Msa0460020:intron | 20.0% |
| !! | ACAAGATATAAATGAAAACA+AGG | - | chr3_3:57017686-57017705 | None:intergenic | 20.0% |
| !! | TAACTAACTTCATTCATTTA+AGG | + | chr3_3:57017969-57017988 | Msa0460020:intron | 20.0% |
| !! | ATTACTTTAATCACATATAC+AGG | + | chr3_3:57018170-57018189 | Msa0460020:intron | 20.0% |
| !! | TAGTGACAGATAATTAAAAA+AGG | + | chr3_3:57018425-57018444 | Msa0460020:intron | 20.0% |
| !! | TTCACTAGATTAAAATCATA+GGG | - | chr3_3:57019056-57019075 | None:intergenic | 20.0% |
| !! | ATTCACTAGATTAAAATCAT+AGG | - | chr3_3:57019057-57019076 | None:intergenic | 20.0% |
| !!! | TATCAGTGATGAATTTATTT+TGG | + | chr3_3:57019156-57019175 | Msa0460020:CDS | 20.0% |
| !! | ATTCAGTAGAATTGTATATT+TGG | + | chr3_3:57019353-57019372 | Msa0460020:three_prime_UTR | 20.0% |
| ! | GATCAATCATTCATTATACA+TGG | + | chr3_3:57014049-57014068 | Msa0460020:five_prime_UTR | 25.0% |
| ! | TTGATTATATGGTAGAAAGT+TGG | - | chr3_3:57014235-57014254 | None:intergenic | 25.0% |
| ! | AGTTTCAAACTTTAACTCAA+TGG | + | chr3_3:57014254-57014273 | Msa0460020:intron | 25.0% |
| ! | TGGTGACTCATTATAATATT+TGG | - | chr3_3:57014416-57014435 | None:intergenic | 25.0% |
| ! | TTAAAGCATGGAATAATTGA+GGG | - | chr3_3:57014535-57014554 | None:intergenic | 25.0% |
| !! | TTTAAAGCATGGAATAATTG+AGG | - | chr3_3:57014536-57014555 | None:intergenic | 25.0% |
| ! | GCTCTTATGTTATAAGTTTA+TGG | + | chr3_3:57014584-57014603 | Msa0460020:intron | 25.0% |
| !! | ATTTTGTGATTTTCAACAAG+TGG | + | chr3_3:57014627-57014646 | Msa0460020:five_prime_UTR | 25.0% |
| !! | TTTTGTGATTTTCAACAAGT+GGG | + | chr3_3:57014628-57014647 | Msa0460020:five_prime_UTR | 25.0% |
| !! | ATGGAAATTCCTTTTTCTTT+TGG | + | chr3_3:57014656-57014675 | Msa0460020:CDS | 25.0% |
| ! | TATGTTGTAAATGGTTCTTA+AGG | + | chr3_3:57014795-57014814 | Msa0460020:intron | 25.0% |
| !!! | ATTATTAGTTTTTATGGTGG+AGG | + | chr3_3:57014924-57014943 | Msa0460020:intron | 25.0% |
| ! | CTGAATATCATTTCAGAAAT+TGG | + | chr3_3:57014957-57014976 | Msa0460020:intron | 25.0% |
| ! | ATCATTTATGTAAGTAGGAT+CGG | + | chr3_3:57015045-57015064 | Msa0460020:intron | 25.0% |
| !!! | TCCTTGTTTTGAATGTAATT+TGG | + | chr3_3:57015127-57015146 | Msa0460020:intron | 25.0% |
| ! | TCCAAATTACATTCAAAACA+AGG | - | chr3_3:57015131-57015150 | None:intergenic | 25.0% |
| ! | ATGATATCTATAATAGGACT+CGG | + | chr3_3:57015172-57015191 | Msa0460020:intron | 25.0% |
| ! | AAGAAGAAAAAATAATCCGT+TGG | + | chr3_3:57015226-57015245 | Msa0460020:intron | 25.0% |
| ! | AGAAGAAAAAATAATCCGTT+GGG | + | chr3_3:57015227-57015246 | Msa0460020:intron | 25.0% |
| !! | TGCATTTTTAACGAAATTAC+TGG | + | chr3_3:57015270-57015289 | Msa0460020:intron | 25.0% |
| ! | TTTAACGAAATTACTGGTAA+AGG | + | chr3_3:57015276-57015295 | Msa0460020:intron | 25.0% |
| ! | TTCTTCAGTTCATAGAAATA+TGG | + | chr3_3:57015564-57015583 | Msa0460020:intron | 25.0% |
| !!! | TCAAATTACTTTTGAAGGAA+TGG | - | chr3_3:57015648-57015667 | None:intergenic | 25.0% |
| ! | CTATATCAGCTTGTAAAAAT+TGG | - | chr3_3:57016029-57016048 | None:intergenic | 25.0% |
| !! | ATTTTTACAAGCTGATATAG+CGG | + | chr3_3:57016029-57016048 | Msa0460020:intron | 25.0% |
| ! | TATTTATAATAGGTCACGTT+TGG | - | chr3_3:57016131-57016150 | None:intergenic | 25.0% |
| ! | TTACGTATTACGATGAATAT+AGG | - | chr3_3:57016184-57016203 | None:intergenic | 25.0% |
| ! | ATAAATAAATACGGGAATGA+TGG | - | chr3_3:57016233-57016252 | None:intergenic | 25.0% |
| ! | TTCCCGTATTTATTTATATG+CGG | + | chr3_3:57016236-57016255 | Msa0460020:intron | 25.0% |
| ! | AGACCGCATATAAATAAATA+CGG | - | chr3_3:57016242-57016261 | None:intergenic | 25.0% |
| !!! | AGTTTTTATTGGTTAAGTCT+TGG | + | chr3_3:57016405-57016424 | Msa0460020:intron | 25.0% |
| ! | AAACAGAAATCGTTATACAA+AGG | - | chr3_3:57016806-57016825 | None:intergenic | 25.0% |
| !!! | TATTTCATTTTTCAATGCAG+GGG | + | chr3_3:57016864-57016883 | Msa0460020:intron | 25.0% |
| ! | TTTCTCAAATTCAGTATTGT+CGG | + | chr3_3:57017001-57017020 | Msa0460020:CDS | 25.0% |
| !!! | ATTTTTTAGTACTCATGAGA+GGG | + | chr3_3:57017066-57017085 | Msa0460020:intron | 25.0% |
| ! | GATTTAAATCTAACAGAAAC+GGG | - | chr3_3:57017303-57017322 | None:intergenic | 25.0% |
| ! | AACATTATTCTTAGGCATTA+TGG | + | chr3_3:57017371-57017390 | Msa0460020:intron | 25.0% |
| ! | GGAAAGAATGATTATATAGT+TGG | + | chr3_3:57017392-57017411 | Msa0460020:intron | 25.0% |
| ! | AGCACATATCTACATATTAA+TGG | + | chr3_3:57018047-57018066 | Msa0460020:CDS | 25.0% |
| ! | TACCATCTTAGATTAACAAA+AGG | - | chr3_3:57018096-57018115 | None:intergenic | 25.0% |
| !!! | TATTTGCTTGCTTTTACTTT+TGG | + | chr3_3:57018135-57018154 | Msa0460020:intron | 25.0% |
| !!! | TTATGGTCATGCTTTTATTT+TGG | + | chr3_3:57018332-57018351 | Msa0460020:intron | 25.0% |
| ! | AATTTGAGTCATTTGATGTA+TGG | + | chr3_3:57018718-57018737 | Msa0460020:intron | 25.0% |
| ! | GTTCTCAATGAAAAACATAA+AGG | - | chr3_3:57018755-57018774 | None:intergenic | 25.0% |
| !! | TTATGTTTTTCATTGAGAAC+TGG | + | chr3_3:57018755-57018774 | Msa0460020:intron | 25.0% |
| ! | AAATACACACAAAAACCAAA+TGG | - | chr3_3:57018816-57018835 | None:intergenic | 25.0% |
| !!! | TGATGAATTTATTTTGGTTC+TGG | + | chr3_3:57019162-57019181 | Msa0460020:CDS | 25.0% |
| TTATATGGTAGAAAGTTGGA+AGG | - | chr3_3:57014231-57014250 | None:intergenic | 30.0% | |
| TTTCATGTGTGCATATGATT+TGG | + | chr3_3:57014355-57014374 | Msa0460020:intron | 30.0% | |
| AAAACGTGTCTACTAAACAA+TGG | - | chr3_3:57014436-57014455 | None:intergenic | 30.0% | |
| ! | TTTGTGATTTTCAACAAGTG+GGG | + | chr3_3:57014629-57014648 | Msa0460020:five_prime_UTR | 30.0% |
| !!! | TCCTTTTTCTTTTGGTTTCT+TGG | + | chr3_3:57014664-57014683 | Msa0460020:CDS | 30.0% |
| CTCAAAGCAAAGAAATTCAA+TGG | + | chr3_3:57014690-57014709 | Msa0460020:CDS | 30.0% | |
| AAGATGAGTGGTAAATCAAA+TGG | + | chr3_3:57014980-57014999 | Msa0460020:intron | 30.0% | |
| TTACTCTACAGCATAATTAC+AGG | + | chr3_3:57015446-57015465 | Msa0460020:intron | 30.0% | |
| !!! | GTATTTGTTTAGTTTTCTGC+TGG | + | chr3_3:57015540-57015559 | Msa0460020:intron | 30.0% |
| AGTTAGTGAATATTCCTGTA+TGG | + | chr3_3:57015832-57015851 | Msa0460020:intron | 30.0% | |
| ATCTGATATAAAAGCCATAC+AGG | - | chr3_3:57015849-57015868 | None:intergenic | 30.0% | |
| ! | GTATGGCTTTTATATCAGAT+TGG | + | chr3_3:57015849-57015868 | Msa0460020:intron | 30.0% |
| ! | GCTTTTATATCAGATTGGAT+TGG | + | chr3_3:57015854-57015873 | Msa0460020:intron | 30.0% |
| !!! | CTATCCTAGTTTTGCTATTA+GGG | + | chr3_3:57015986-57016005 | Msa0460020:intron | 30.0% |
| ATTTCCCTAATAGCAAAACT+AGG | - | chr3_3:57015993-57016012 | None:intergenic | 30.0% | |
| GACCGCATATAAATAAATAC+GGG | - | chr3_3:57016241-57016260 | None:intergenic | 30.0% | |
| !!! | GCTCTGAGTTTAGTTTTTAT+TGG | + | chr3_3:57016394-57016413 | Msa0460020:intron | 30.0% |
| ! | TATTGGTTAAGTCTTGGTAT+AGG | + | chr3_3:57016411-57016430 | Msa0460020:intron | 30.0% |
| TCTCAAATAACAACAACTTC+AGG | - | chr3_3:57016477-57016496 | None:intergenic | 30.0% | |
| !! | TGAAGTTGTTGTTATTTGAG+AGG | + | chr3_3:57016476-57016495 | Msa0460020:intron | 30.0% |
| !! | GAAGTTGTTGTTATTTGAGA+GGG | + | chr3_3:57016477-57016496 | Msa0460020:intron | 30.0% |
| ! | TTGAGAGGGTATATTAAGAA+TGG | + | chr3_3:57016491-57016510 | Msa0460020:intron | 30.0% |
| TTTGTCCAACTTATCTGAAT+TGG | + | chr3_3:57016597-57016616 | Msa0460020:intron | 30.0% | |
| TCGTTATACAAAGGAATTAC+CGG | - | chr3_3:57016797-57016816 | None:intergenic | 30.0% | |
| TAAAGGATGCAAAAAAAGCA+TGG | - | chr3_3:57016902-57016921 | None:intergenic | 30.0% | |
| CAAGAGGTAAAATGAAGTAA+AGG | - | chr3_3:57016919-57016938 | None:intergenic | 30.0% | |
| ATAGATCTGATAAGATCAAG+AGG | - | chr3_3:57016935-57016954 | None:intergenic | 30.0% | |
| !!! | GATTTTTTAGTACTCATGAG+AGG | + | chr3_3:57017065-57017084 | Msa0460020:intron | 30.0% |
| !!! | TTTTTTAGTACTCATGAGAG+GGG | + | chr3_3:57017067-57017086 | Msa0460020:intron | 30.0% |
| ! | CTAAAACATGATCACCTTTT+AGG | - | chr3_3:57017111-57017130 | None:intergenic | 30.0% |
| ! | CATGATAAGTTTTCCATCAA+TGG | + | chr3_3:57017209-57017228 | Msa0460020:intron | 30.0% |
| TTGTATATCTCTTCCATTGA+TGG | - | chr3_3:57017225-57017244 | None:intergenic | 30.0% | |
| AATACACTACTAGCATATGA+TGG | - | chr3_3:57017272-57017291 | None:intergenic | 30.0% | |
| GATATCAAACAAGAAGAAAC+AGG | - | chr3_3:57017328-57017347 | None:intergenic | 30.0% | |
| !! | AGGTTATTTTCTAACAGATC+TGG | + | chr3_3:57017459-57017478 | Msa0460020:intron | 30.0% |
| !! | TATTTGGAATTTTCCAGCTT+TGG | + | chr3_3:57017489-57017508 | Msa0460020:intron | 30.0% |
| !! | ATTTGGAATTTTCCAGCTTT+GGG | + | chr3_3:57017490-57017509 | Msa0460020:intron | 30.0% |
| AAAGCAGGTAAATGAAAACA+AGG | - | chr3_3:57017619-57017638 | None:intergenic | 30.0% | |
| ! | TTAGACAAAACTTTGAAAGC+AGG | - | chr3_3:57017634-57017653 | None:intergenic | 30.0% |
| !! | CCTTGATTTCATTTTGTTTC+CGG | - | chr3_3:57017798-57017817 | None:intergenic | 30.0% |
| GAAACAAAATGAAATCAAGG+TGG | + | chr3_3:57017798-57017817 | Msa0460020:intron | 30.0% | |
| AAACAACTTAATGACCAGTT+TGG | - | chr3_3:57017878-57017897 | None:intergenic | 30.0% | |
| ATTATCCAATCTTTGCTAAG+TGG | + | chr3_3:57018021-57018040 | Msa0460020:CDS | 30.0% | |
| ! | CTCCTTTTGTTAATCTAAGA+TGG | + | chr3_3:57018091-57018110 | Msa0460020:CDS | 30.0% |
| TAATCACATATACAGGTACT+TGG | + | chr3_3:57018177-57018196 | Msa0460020:intron | 30.0% | |
| TCAAAACTTTACATCTGGAA+TGG | + | chr3_3:57018220-57018239 | Msa0460020:CDS | 30.0% | |
| ATAAGATAAGCAACTTCTTC+AGG | - | chr3_3:57018316-57018335 | None:intergenic | 30.0% | |
| TGAAGAAGTTGCTTATCTTA+TGG | + | chr3_3:57018315-57018334 | Msa0460020:CDS | 30.0% | |
| !!! | CTTCATTTAGTTTTCTCTTC+TGG | + | chr3_3:57018361-57018380 | Msa0460020:intron | 30.0% |
| ! | GTTATGAATGAGCTATGTTT+TGG | + | chr3_3:57018383-57018402 | Msa0460020:intron | 30.0% |
| TACAAAACATAGAACATGAC+TGG | - | chr3_3:57018598-57018617 | None:intergenic | 30.0% | |
| ! | GTCATGTTCTATGTTTTGTA+TGG | + | chr3_3:57018598-57018617 | Msa0460020:intron | 30.0% |
| ATATCAAATACGATGCCATT+TGG | + | chr3_3:57018798-57018817 | Msa0460020:intron | 30.0% | |
| AAATTCATCACTGATAACAC+AGG | - | chr3_3:57019152-57019171 | None:intergenic | 30.0% | |
| ! | AGAGGAAAAGAGTGTGTTAA+TGG | - | chr3_3:57014129-57014148 | None:intergenic | 35.0% |
| ! | ATGGCTGCATTTACTTCTTT+TGG | + | chr3_3:57014273-57014292 | Msa0460020:intron | 35.0% |
| ! | TGGCTGCATTTACTTCTTTT+GGG | + | chr3_3:57014274-57014293 | Msa0460020:intron | 35.0% |
| GCAGAAGAAGATGAAAATAG+AGG | - | chr3_3:57014302-57014321 | None:intergenic | 35.0% | |
| GCCAAGAAACCAAAAGAAAA+AGG | - | chr3_3:57014668-57014687 | None:intergenic | 35.0% | |
| TTCAGAAATTGGAAGATGAG+TGG | + | chr3_3:57014968-57014987 | Msa0460020:intron | 35.0% | |
| AGAAAAAATAATCCGTTGGG+TGG | + | chr3_3:57015230-57015249 | Msa0460020:intron | 35.0% | |
| CTATCAAATTGTGCTTAGTC+TGG | + | chr3_3:57015506-57015525 | Msa0460020:intron | 35.0% | |
| AATTGTGCTTAGTCTGGTAT+AGG | + | chr3_3:57015512-57015531 | Msa0460020:intron | 35.0% | |
| TGCAATGCTATAGTGCTTTA+GGG | - | chr3_3:57015929-57015948 | None:intergenic | 35.0% | |
| TTGCAATGCTATAGTGCTTT+AGG | - | chr3_3:57015930-57015949 | None:intergenic | 35.0% | |
| !!! | GCTATCCTAGTTTTGCTATT+AGG | + | chr3_3:57015985-57016004 | Msa0460020:intron | 35.0% |
| TGAAATAGCAAATAGCGTTG+CGG | - | chr3_3:57016322-57016341 | None:intergenic | 35.0% | |
| ! | GAGTTTGACTTTGAACTGTT+AGG | + | chr3_3:57016519-57016538 | Msa0460020:intron | 35.0% |
| ATCAGCCAATTCAGATAAGT+TGG | - | chr3_3:57016605-57016624 | None:intergenic | 35.0% | |
| ! | TTTAGTTCACGGTTGTTCAT+CGG | + | chr3_3:57016729-57016748 | Msa0460020:CDS | 35.0% |
| GGAAAGTTGAATGGAATAAC+CGG | + | chr3_3:57016775-57016794 | Msa0460020:CDS | 35.0% | |
| ATAAACTATGCAGGCCTAAA+AGG | + | chr3_3:57017094-57017113 | Msa0460020:intron | 35.0% | |
| GAGAACTGTTCAAAGAATGA+TGG | - | chr3_3:57017436-57017455 | None:intergenic | 35.0% | |
| TTCTTTGAACAGTTCTCTAC+AGG | + | chr3_3:57017439-57017458 | Msa0460020:intron | 35.0% | |
| !!! | CAGATCTGGCTTTTGTTATT+TGG | + | chr3_3:57017473-57017492 | Msa0460020:intron | 35.0% |
| !! | CATTTTGTTTCCGGTGTTTT+TGG | - | chr3_3:57017789-57017808 | None:intergenic | 35.0% |
| CCGGAAACAAAATGAAATCA+AGG | + | chr3_3:57017795-57017814 | Msa0460020:intron | 35.0% | |
| TAGTTAGCATAGCTAAGATG+AGG | - | chr3_3:57017955-57017974 | None:intergenic | 35.0% | |
| ! | TCATTTAAGGTTCTACACCA+CGG | + | chr3_3:57017982-57018001 | Msa0460020:intron | 35.0% |
| ! | ATTAATGGTTCTTTTCACCG+AGG | + | chr3_3:57018062-57018081 | Msa0460020:CDS | 35.0% |
| ! | TTAATGGTTCTTTTCACCGA+GGG | + | chr3_3:57018063-57018082 | Msa0460020:CDS | 35.0% |
| !!! | AAGTTTTGAGCTCTTAAGAC+CGG | - | chr3_3:57018209-57018228 | None:intergenic | 35.0% |
| AGAGCTCAAAACTTTACATC+TGG | + | chr3_3:57018215-57018234 | Msa0460020:CDS | 35.0% | |
| !! | AATGGTGTTGCATTGTTCTT+CGG | + | chr3_3:57018238-57018257 | Msa0460020:CDS | 35.0% |
| TTGGTACTGTCTATCATACT+CGG | + | chr3_3:57018265-57018284 | Msa0460020:CDS | 35.0% | |
| AACTTCTTCAGGTACTACAA+TGG | - | chr3_3:57018305-57018324 | None:intergenic | 35.0% | |
| TAAGAAACATAAGCAGCGTT+TGG | + | chr3_3:57018541-57018560 | Msa0460020:intron | 35.0% | |
| GGAGTTAAAGTACAAAATGC+TGG | + | chr3_3:57018636-57018655 | Msa0460020:intron | 35.0% | |
| GTGTAAACAAGAACATGAAC+AGG | - | chr3_3:57018962-57018981 | None:intergenic | 35.0% | |
| ! | TGTTCTTGTTTACACACATG+TGG | + | chr3_3:57018967-57018986 | Msa0460020:intron | 35.0% |
| TGTAAAGTATATATGCGACG+AGG | - | chr3_3:57019029-57019048 | None:intergenic | 35.0% | |
| ! | CTACTTGATGATCGATCAAA+CGG | + | chr3_3:57019259-57019278 | Msa0460020:three_prime_UTR | 35.0% |
| AATAAGGCGAAAGAGACAAG+AGG | - | chr3_3:57014147-57014166 | None:intergenic | 40.0% | |
| !!! | TTTCGCCTTATTTTCTGCTC+AGG | + | chr3_3:57014155-57014174 | Msa0460020:five_prime_UTR | 40.0% |
| ACAGACCTGAGCAGAAAATA+AGG | - | chr3_3:57014163-57014182 | None:intergenic | 40.0% | |
| AGGTTGGAAGTGAAGAGATA+AGG | - | chr3_3:57014211-57014230 | None:intergenic | 40.0% | |
| ATGGTAGAAAGTTGGAAGGT+TGG | - | chr3_3:57014227-57014246 | None:intergenic | 40.0% | |
| GGAATAATTGAGGGTGGAAT+AGG | - | chr3_3:57014526-57014545 | None:intergenic | 40.0% | |
| AAGCATGGAATAATTGAGGG+TGG | - | chr3_3:57014532-57014551 | None:intergenic | 40.0% | |
| TTTCAACAAGTGGGGTTGAA+TGG | + | chr3_3:57014637-57014656 | Msa0460020:exon | 40.0% | |
| TTGACTCTGATCACATGTGT+CGG | - | chr3_3:57014887-57014906 | None:intergenic | 40.0% | |
| GAGTGGTAAATCAAATGGAG+AGG | + | chr3_3:57014985-57015004 | Msa0460020:intron | 40.0% | |
| ! | TAATAGGACTCGGTATCATG+TGG | + | chr3_3:57015182-57015201 | Msa0460020:intron | 40.0% |
| ACTCGGTATCATGTGGTTTA+TGG | + | chr3_3:57015189-57015208 | Msa0460020:intron | 40.0% | |
| ! | AGGGTCAATTGGGTAGTTTT+GGG | + | chr3_3:57015314-57015333 | Msa0460020:intron | 40.0% |
| !! | CTATTTGACAACACTGACTC+AGG | - | chr3_3:57015903-57015922 | None:intergenic | 40.0% |
| GAGTCAGTGTTGTCAAATAG+CGG | + | chr3_3:57015903-57015922 | Msa0460020:intron | 40.0% | |
| ATAGCGGCAATAGCAGAAAA+AGG | + | chr3_3:57016045-57016064 | Msa0460020:intron | 40.0% | |
| AACGCAGCTTTCATACTGAA+AGG | - | chr3_3:57016208-57016227 | None:intergenic | 40.0% | |
| GAAATAGCAAATAGCGTTGC+GGG | - | chr3_3:57016321-57016340 | None:intergenic | 40.0% | |
| !! | ACGCTATTTGCTATTTCACC+TGG | + | chr3_3:57016324-57016343 | Msa0460020:intron | 40.0% |
| !! | CTATTTGCTATTTCACCTGG+CGG | + | chr3_3:57016327-57016346 | Msa0460020:intron | 40.0% |
| !!! | TATTTCACCTGGCGGATTTT+GGG | + | chr3_3:57016335-57016354 | Msa0460020:intron | 40.0% |
| !! | GTGTTATCAATAGCGGATTG+TGG | - | chr3_3:57016373-57016392 | None:intergenic | 40.0% |
| CAGAGCAGTGTTATCAATAG+CGG | - | chr3_3:57016380-57016399 | None:intergenic | 40.0% | |
| GGTTAAGTCTTGGTATAGGT+AGG | + | chr3_3:57016415-57016434 | Msa0460020:intron | 40.0% | |
| !!! | TGACTGCTGCTTTTAGTTCA+CGG | + | chr3_3:57016718-57016737 | Msa0460020:CDS | 40.0% |
| TACAGAAAATTGAGCAGTGC+TGG | + | chr3_3:57016753-57016772 | Msa0460020:CDS | 40.0% | |
| ACAGAAAATTGAGCAGTGCT+GGG | + | chr3_3:57016754-57016773 | Msa0460020:CDS | 40.0% | |
| CTATGCTTCACCAAAAACAC+CGG | + | chr3_3:57017776-57017795 | Msa0460020:intron | 40.0% | |
| AACGCTTTCTCAAACCAAAC+TGG | + | chr3_3:57017861-57017880 | Msa0460020:intron | 40.0% | |
| ! | CATTTAAGGTTCTACACCAC+GGG | + | chr3_3:57017983-57018002 | Msa0460020:intron | 40.0% |
| CTTGACCACTTAGCAAAGAT+TGG | - | chr3_3:57018029-57018048 | None:intergenic | 40.0% | |
| !! | ATGGTGTTGCATTGTTCTTC+GGG | + | chr3_3:57018239-57018258 | Msa0460020:CDS | 40.0% |
| ATAAGCAGCGTTTGGTAGAA+AGG | + | chr3_3:57018549-57018568 | Msa0460020:intron | 40.0% | |
| GTATGGCGCAAGTTAATATC+AGG | + | chr3_3:57018615-57018634 | Msa0460020:intron | 40.0% | |
| GAGATAGAGATAAACGCACA+CGG | + | chr3_3:57018871-57018890 | Msa0460020:intron | 40.0% | |
| !! | CTGTGTTTCATTTTTCCTGC+AGG | + | chr3_3:57018923-57018942 | Msa0460020:intron | 40.0% |
| CATGCAGACCTCATCAAAAT+GGG | - | chr3_3:57018994-57019013 | None:intergenic | 40.0% | |
| ACAAGCTGTAGAAACCCATT+GGG | - | chr3_3:57019118-57019137 | None:intergenic | 40.0% | |
| AACAAGCTGTAGAAACCCAT+TGG | - | chr3_3:57019119-57019138 | None:intergenic | 40.0% | |
| ! | AATGGGTTTCTACAGCTTGT+TGG | + | chr3_3:57019118-57019137 | Msa0460020:CDS | 40.0% |
| TTCATCACTGATAACACAGG+AGG | - | chr3_3:57019149-57019168 | None:intergenic | 40.0% | |
| !! | AAGAGTTTTGACCATACCCT+TGG | - | chr3_3:57019195-57019214 | None:intergenic | 40.0% |
| TCATCAAGTAGCAGGAAATG+TGG | - | chr3_3:57019250-57019269 | None:intergenic | 40.0% | |
| TTGATCGATCATCAAGTAGC+AGG | - | chr3_3:57019258-57019277 | None:intergenic | 40.0% | |
| ! | TGTTGATTGCAACTGTACTG+AGG | - | chr3_3:57019296-57019315 | None:intergenic | 40.0% |
| ! | ACTGGTAAAGGCTTTGTGTG+CGG | + | chr3_3:57015288-57015307 | Msa0460020:intron | 45.0% |
| ! | GAGGGTCAATTGGGTAGTTT+TGG | + | chr3_3:57015313-57015332 | Msa0460020:intron | 45.0% |
| GTTGACCAAACGCTACACTA+GGG | - | chr3_3:57015419-57015438 | None:intergenic | 45.0% | |
| AGTTGACCAAACGCTACACT+AGG | - | chr3_3:57015420-57015439 | None:intergenic | 45.0% | |
| AACTAGGATAGCAACGTTCG+TGG | - | chr3_3:57015977-57015996 | None:intergenic | 45.0% | |
| AACTGAACAATCTGCACGTG+TGG | + | chr3_3:57016098-57016117 | Msa0460020:intron | 45.0% | |
| !!! | CTATTTCACCTGGCGGATTT+TGG | + | chr3_3:57016334-57016353 | Msa0460020:intron | 45.0% |
| AGGGGAGTGATAAACTATGC+AGG | + | chr3_3:57017085-57017104 | Msa0460020:intron | 45.0% | |
| !!! | TGGAATTTTCCAGCTTTGGG+AGG | + | chr3_3:57017493-57017512 | Msa0460020:intron | 45.0% |
| !!! | TTTTCCAGCTTTGGGAGGTT+TGG | + | chr3_3:57017498-57017517 | Msa0460020:intron | 45.0% |
| TATTCCAAACCTCCCAAAGC+TGG | - | chr3_3:57017505-57017524 | None:intergenic | 45.0% | |
| !!! | CGGTGTTTTTGGTGAAGCAT+AGG | - | chr3_3:57017778-57017797 | None:intergenic | 45.0% |
| TTGAAAACAACGATAGCCCG+TGG | - | chr3_3:57018002-57018021 | None:intergenic | 45.0% | |
| AACAAAAGGAGTTGTGCCCT+CGG | - | chr3_3:57018082-57018101 | None:intergenic | 45.0% | |
| ! | TTTTGAGCTCTTAAGACCGG+CGG | - | chr3_3:57018206-57018225 | None:intergenic | 45.0% |
| ! | CATTTTTCCTGCAGGTAGCA+AGG | + | chr3_3:57018931-57018950 | Msa0460020:intron | 45.0% |
| !! | CATGTGGACCCATTTTGATG+AGG | + | chr3_3:57018983-57019002 | Msa0460020:intron | 45.0% |
| GCATGCAGACCTCATCAAAA+TGG | - | chr3_3:57018995-57019014 | None:intergenic | 45.0% | |
| ! | GTCTTTTTCTCCCCTACTTC+AGG | + | chr3_3:57019079-57019098 | Msa0460020:intron | 45.0% |
| !! | TTGGTTCTGGAAGATTGCCA+AGG | + | chr3_3:57019175-57019194 | Msa0460020:CDS | 45.0% |
| !! | TGGTTCTGGAAGATTGCCAA+GGG | + | chr3_3:57019176-57019195 | Msa0460020:CDS | 45.0% |
| TCAAGTAGCAGGAAATGTGG+TGG | - | chr3_3:57019247-57019266 | None:intergenic | 45.0% | |
| ! | TGGCTGCTGTCTGTGTTTTC+TGG | + | chr3_3:57014710-57014729 | Msa0460020:CDS | 50.0% |
| ATGCAAGCTCTTCCACCCAA+CGG | - | chr3_3:57015245-57015264 | None:intergenic | 50.0% | |
| TACAGCCCTAGTGTAGCGTT+TGG | + | chr3_3:57015411-57015430 | Msa0460020:intron | 50.0% | |
| AGAAACACCCAAAATCCGCC+AGG | - | chr3_3:57016345-57016364 | None:intergenic | 50.0% | |
| ! | GCAGTGCTGGGAAAGTTGAA+TGG | + | chr3_3:57016766-57016785 | Msa0460020:CDS | 50.0% |
| GTGTTGCATTGTTCTTCGGG+TGG | + | chr3_3:57018242-57018261 | Msa0460020:CDS | 50.0% | |
| TGCATTGTTCTTCGGGTGGT+TGG | + | chr3_3:57018246-57018265 | Msa0460020:CDS | 50.0% | |
| GGAAAATCCTTGCTACCTGC+AGG | - | chr3_3:57018941-57018960 | None:intergenic | 50.0% | |
| ACCTGCTTCACCTGAAGTAG+GGG | - | chr3_3:57019092-57019111 | None:intergenic | 50.0% | |
| GACCTGCTTCACCTGAAGTA+GGG | - | chr3_3:57019093-57019112 | None:intergenic | 50.0% | |
| AGACCTGCTTCACCTGAAGT+AGG | - | chr3_3:57019094-57019113 | None:intergenic | 50.0% | |
| GTGAAGCAGGTCTTCCCAAT+GGG | + | chr3_3:57019101-57019120 | Msa0460020:CDS | 50.0% | |
| !! | GGGTTTCTACAGCTTGTTGG+TGG | + | chr3_3:57019121-57019140 | Msa0460020:CDS | 50.0% |
| CTGGAAGATTGCCAAGGGTA+TGG | + | chr3_3:57019181-57019200 | Msa0460020:CDS | 50.0% | |
| ! | GGTAAAGGCTTTGTGTGCGG+TGG | + | chr3_3:57015291-57015310 | Msa0460020:intron | 55.0% |
| ! | AAAGGCTTTGTGTGCGGTGG+AGG | + | chr3_3:57015294-57015313 | Msa0460020:intron | 55.0% |
| ! | AAGGCTTTGTGTGCGGTGGA+GGG | + | chr3_3:57015295-57015314 | Msa0460020:intron | 55.0% |
| TGTGCGGTGGAGGGTCAATT+GGG | + | chr3_3:57015304-57015323 | Msa0460020:intron | 55.0% | |
| !! | CACTGACTCAGGCACAGTAC+AGG | - | chr3_3:57015892-57015911 | None:intergenic | 55.0% |
| TACAGGTACTTGGACACCGC+CGG | + | chr3_3:57018187-57018206 | Msa0460020:intron | 55.0% | |
| TCCCCTACTTCAGGTGAAGC+AGG | + | chr3_3:57019088-57019107 | Msa0460020:intron | 55.0% | |
| GGTGAAGCAGGTCTTCCCAA+TGG | + | chr3_3:57019100-57019119 | Msa0460020:intron | 55.0% | |
| GTGTGCGGTGGAGGGTCAAT+TGG | + | chr3_3:57015303-57015322 | Msa0460020:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 57014049 | 57019440 | 57014049 | ID=Msa0460020;Name=Msa0460020 |
| chr3_3 | mRNA | 57014049 | 57019440 | 57014049 | ID=Msa0460020-mRNA-1;Parent=Msa0460020;Name=Msa0460020-mRNA-1;_AED=0.18;_eAED=0.18;_QI=166|0.66|0.85|1|0.83|0.71|7|202|242 |
| chr3_3 | exon | 57014049 | 57014176 | 57014049 | ID=Msa0460020-mRNA-1:exon:11520;Parent=Msa0460020-mRNA-1 |
| chr3_3 | exon | 57014618 | 57014751 | 57014618 | ID=Msa0460020-mRNA-1:exon:11521;Parent=Msa0460020-mRNA-1 |
| chr3_3 | exon | 57016708 | 57016796 | 57016708 | ID=Msa0460020-mRNA-1:exon:11522;Parent=Msa0460020-mRNA-1 |
| chr3_3 | exon | 57016884 | 57017022 | 57016884 | ID=Msa0460020-mRNA-1:exon:11523;Parent=Msa0460020-mRNA-1 |
| chr3_3 | exon | 57017991 | 57018112 | 57017991 | ID=Msa0460020-mRNA-1:exon:11524;Parent=Msa0460020-mRNA-1 |
| chr3_3 | exon | 57018192 | 57018336 | 57018192 | ID=Msa0460020-mRNA-1:exon:11525;Parent=Msa0460020-mRNA-1 |
| chr3_3 | exon | 57019101 | 57019440 | 57019101 | ID=Msa0460020-mRNA-1:exon:11526;Parent=Msa0460020-mRNA-1 |
| chr3_3 | five_prime_UTR | 57014049 | 57014176 | 57014049 | ID=Msa0460020-mRNA-1:five_prime_utr;Parent=Msa0460020-mRNA-1 |
| chr3_3 | five_prime_UTR | 57014618 | 57014655 | 57014618 | ID=Msa0460020-mRNA-1:five_prime_utr;Parent=Msa0460020-mRNA-1 |
| chr3_3 | CDS | 57014656 | 57014751 | 57014656 | ID=Msa0460020-mRNA-1:cds;Parent=Msa0460020-mRNA-1 |
| chr3_3 | CDS | 57016708 | 57016796 | 57016708 | ID=Msa0460020-mRNA-1:cds;Parent=Msa0460020-mRNA-1 |
| chr3_3 | CDS | 57016884 | 57017022 | 57016884 | ID=Msa0460020-mRNA-1:cds;Parent=Msa0460020-mRNA-1 |
| chr3_3 | CDS | 57017991 | 57018112 | 57017991 | ID=Msa0460020-mRNA-1:cds;Parent=Msa0460020-mRNA-1 |
| chr3_3 | CDS | 57018192 | 57018336 | 57018192 | ID=Msa0460020-mRNA-1:cds;Parent=Msa0460020-mRNA-1 |
| chr3_3 | CDS | 57019101 | 57019238 | 57019101 | ID=Msa0460020-mRNA-1:cds;Parent=Msa0460020-mRNA-1 |
| chr3_3 | three_prime_UTR | 57019239 | 57019440 | 57019239 | ID=Msa0460020-mRNA-1:three_prime_utr;Parent=Msa0460020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
