AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0115270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115270 MtrunA17_Chr1g0212511 97.727 264 6 0 48 311 1 264 0.0 543
Msa0115270 MtrunA17_Chr3g0144021 69.375 160 44 4 61 215 8 167 5.22e-73 224
Msa0115270 MtrunA17_Chr7g0222981 60.753 186 51 5 52 236 1 165 2.35e-66 206
Msa0115270 MtrunA17_Chr4g0043891 44.706 85 38 1 132 216 8 83 1.80e-16 77.4
Msa0115270 MtrunA17_Chr2g0283141 43.939 66 37 0 129 194 52 117 2.96e-15 75.9
Msa0115270 MtrunA17_Chr7g0223471 42.857 77 40 1 119 191 30 106 2.72e-14 72.8
Msa0115270 MtrunA17_Chr8g0392991 39.506 81 48 1 132 212 96 175 8.89e-13 68.2
Msa0115270 MtrunA17_Chr7g0238431 46.774 62 33 0 132 193 8 69 1.87e-12 65.5
Msa0115270 MtrunA17_Chr4g0031341 46.667 60 32 0 132 191 25 84 1.08e-11 63.9
Msa0115270 MtrunA17_Chr5g0436661 43.333 60 34 0 132 191 33 92 2.32e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115270 AT4G35550.1 53.383 266 73 6 67 311 33 268 4.30e-85 257
Msa0115270 AT1G20700.3 52.761 163 69 5 57 215 19 177 1.55e-52 171
Msa0115270 AT1G20700.1 52.761 163 69 5 57 215 19 177 1.99e-52 171
Msa0115270 AT1G20700.2 63.415 82 30 0 122 203 23 104 6.13e-34 122
Msa0115270 AT1G20710.1 52.857 140 61 4 70 205 13 151 1.24e-33 122
Msa0115270 AT5G45980.1 44.615 65 36 0 129 193 52 116 5.14e-15 74.7
Msa0115270 AT2G33880.2 44.615 65 36 0 129 193 52 116 5.18e-15 75.5
Msa0115270 AT2G33880.1 44.615 65 36 0 129 193 52 116 6.12e-15 75.1
Msa0115270 AT3G18010.1 46.667 60 32 0 132 191 76 135 4.60e-13 69.3
Msa0115270 AT3G11260.1 46.774 62 33 0 132 193 24 85 3.67e-12 64.3
Msa0115270 AT5G05770.1 37.662 77 48 0 132 208 29 105 7.61e-12 62.0
Msa0115270 AT2G28610.1 43.548 62 35 0 132 193 8 69 1.29e-11 63.9
Msa0115270 AT2G01500.1 45.455 55 30 0 132 186 61 115 8.11e-11 62.0

Find 70 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACATTCGTTTCAGAAATT+TGG 0.112745 1_3:-34104179 None:intergenic
TCGATCTAGCACGCCTATTT+TGG 0.121950 1_3:-34104212 None:intergenic
TTTATAATTGGTTCCAAAAT+AGG 0.153266 1_3:+34104199 Msa0115270:CDS
AATTTGGCAGGTTGATATTT+TGG 0.169604 1_3:+34105103 Msa0115270:exon
CTGAAACGAATGTTTATAAT+TGG 0.212926 1_3:+34104187 Msa0115270:CDS
TTTCCAGTAACTATCTTAAA+AGG 0.243645 1_3:-34105233 None:intergenic
AGACATGCCACTCAAATTTC+TGG 0.262992 1_3:-34104469 None:intergenic
AATGTTATTACATCATATTT+TGG 0.286215 1_3:+34105278 Msa0115270:three_prime_UTR
CGAATATACGCTCAAGAATC+TGG 0.304326 1_3:-34104089 None:intergenic
CTGGAAATATTTCCAGTGAT+TGG 0.320216 1_3:+34105249 Msa0115270:three_prime_UTR
CCTTTCATCAGGGGTTAGGC+TGG 0.345313 1_3:+34103984 Msa0115270:intron
AATTGTAGTCCTCTGCTTGC+TGG 0.362368 1_3:-34105084 None:intergenic
TTACATAATTCCTTCTGAAC+TGG 0.378684 1_3:-34105387 None:intergenic
TGTGAGTAAGAGAGAGAAAA+TGG 0.379296 1_3:+34102420 Msa0115270:CDS
CTTCTTAAAAGTTAACCATT+TGG 0.380757 1_3:-34105462 None:intergenic
GGCGGTGTCACCGCATAATT+CGG 0.381609 1_3:+34102263 Msa0115270:five_prime_UTR
CGTATATTCGATCAGGGAAA+TGG 0.392284 1_3:+34104102 Msa0115270:CDS
GCAAGCAGAGGACTACAATT+TGG 0.393799 1_3:+34105087 Msa0115270:CDS
TCTTGAGCGTATATTCGATC+AGG 0.413169 1_3:+34104095 Msa0115270:CDS
TCAAGAATCTGGAGCTGAAC+CGG 0.421307 1_3:-34104078 None:intergenic
TGTAGGAGTCCACCTCTGTC+TGG 0.437314 1_3:-34104055 None:intergenic
TTTCAGAAATTTGGCCATGC+TGG 0.447497 1_3:-34104170 None:intergenic
GGTGATGACTGATGAACAAT+TGG 0.449180 1_3:+34102507 Msa0115270:CDS
CTACTGTCGACTTTGGTCAT+TGG 0.459200 1_3:+34102242 None:intergenic
ATAACTTTGAGTGTGTTGCC+TGG 0.462919 1_3:+34105157 Msa0115270:three_prime_UTR
TCTCAACAAAATGCTGCTCT+AGG 0.464326 1_3:+34104333 Msa0115270:CDS
AACATTTATATGCCAATCAC+TGG 0.465123 1_3:-34105261 None:intergenic
GTTGTCATCTTATAACCAAA+TGG 0.469475 1_3:+34105447 Msa0115270:three_prime_UTR
TCTGCTCAACAAGATCTTGC+TGG 0.471131 1_3:+34102601 Msa0115270:CDS
TGTTGAGAATGAAATTCCTC+TGG 0.474708 1_3:-34104318 None:intergenic
CTCAACAAGCTGTTCACAAA+TGG 0.485586 1_3:-34102563 None:intergenic
TCAGGGAATGACTATCTAGC+TGG 0.485659 1_3:+34105028 Msa0115270:intron
ACAGAGGTGGACTCCTACAC+CGG 0.495315 1_3:+34104059 Msa0115270:CDS
AACTGGAAGTAAAATATTCG+TGG 0.496148 1_3:-34105370 None:intergenic
ATCTAATCTACTGTCGACTT+TGG 0.497279 1_3:+34102235 None:intergenic
CTCAACAAAATGCTGCTCTA+GGG 0.501777 1_3:+34104334 Msa0115270:CDS
TGTCGAAGCGATGTATGTTA+AGG 0.503782 1_3:+34102486 Msa0115270:CDS
TAACTTTGAGTGTGTTGCCT+GGG 0.506964 1_3:+34105158 Msa0115270:three_prime_UTR
CTGTCGACTTTGGTCATTGG+CGG 0.507229 1_3:+34102245 None:intergenic
AGAAACAACAAGTACAGAAT+GGG 0.518129 1_3:+34102461 Msa0115270:CDS
AGAGAAAATGGTGAACATGA+TGG 0.521726 1_3:+34102432 Msa0115270:CDS
GCAGAGGACTACAATTTGGC+AGG 0.523975 1_3:+34105091 Msa0115270:CDS
TGCGACTCATTGATGACAGC+TGG 0.529717 1_3:+34104018 Msa0115270:CDS
CAGAAACAACAAGTACAGAA+TGG 0.532343 1_3:+34102460 Msa0115270:CDS
TCCGGCAAGAAAATATATTG+AGG 0.537944 1_3:+34105337 Msa0115270:three_prime_UTR
AACATATTCCGTGTTTCCAT+CGG 0.539020 1_3:+34104428 Msa0115270:CDS
CTTTCATCAGGGGTTAGGCT+GGG 0.541687 1_3:+34103985 Msa0115270:intron
ACCGCCATCCGATGGAAACA+CGG 0.553887 1_3:-34104436 None:intergenic
AGAGACTGAGGTTGATTCCA+AGG 0.556104 1_3:+34104281 Msa0115270:CDS
GATCTTATACCGCCATCCGA+TGG 0.574800 1_3:-34104444 None:intergenic
CTTGAGCGTATATTCGATCA+GGG 0.579984 1_3:+34104096 Msa0115270:CDS
ATCTGGAGCTGAACCGGTGT+AGG 0.590506 1_3:-34104072 None:intergenic
TCCGTGTTTCCATCGGATGG+CGG 0.595864 1_3:+34104435 Msa0115270:CDS
TATTCCGTGTTTCCATCGGA+TGG 0.597599 1_3:+34104432 Msa0115270:CDS
GCTACTGAACTCAGCCAGCA+TGG 0.597739 1_3:+34104156 Msa0115270:CDS
TCAACAAAATGCTGCTCTAG+GGG 0.599937 1_3:+34104335 Msa0115270:CDS
AACTAGTAACACTGAATCAG+AGG 0.600354 1_3:+34104257 Msa0115270:CDS
CCAGTAACTATCTTAAAAGG+TGG 0.602093 1_3:-34105230 None:intergenic
CATGCCACTCAAATTTCTGG+TGG 0.605707 1_3:-34104466 None:intergenic
ACTGGAAGTAAAATATTCGT+GGG 0.611912 1_3:-34105369 None:intergenic
AAATGGTGAACATGATGGAA+TGG 0.621193 1_3:+34102437 Msa0115270:CDS
TACATTTCGTCCGAATTATG+CGG 0.630503 1_3:-34102273 None:intergenic
TTTCACACGAACATAAGCCC+AGG 0.644552 1_3:-34105175 None:intergenic
AAATCACATCCAGACAGAGG+TGG 0.644627 1_3:+34104046 Msa0115270:CDS
ATGAACAATTGGAAACTCTG+AGG 0.682721 1_3:+34102518 Msa0115270:CDS
TGAATCAGAGGTAGAGACTG+AGG 0.683491 1_3:+34104269 Msa0115270:CDS
AGATCCACCAGAAATTTGAG+TGG 0.687166 1_3:+34104462 Msa0115270:CDS
GGATAAGAAGACAAAACCAG+AGG 0.688078 1_3:+34104302 Msa0115270:CDS
CAATATATACCAGCAAGCAG+AGG 0.697674 1_3:+34105075 Msa0115270:CDS
ACAAAATCACATCCAGACAG+AGG 0.711170 1_3:+34104043 Msa0115270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATATAAAAATTAAA+GGG - chr1_3:34102671-34102690 None:intergenic 0.0%
!!! TTTTTAAAAAAAAAAAATTT+GGG - chr1_3:34103676-34103695 None:intergenic 0.0%
!!! TTTTTATATTATTTTGCTTT+TGG + chr1_3:34102676-34102695 Msa0115270:intron 10.0%
!! TTACTAAAATTAAAATTGAA+GGG - chr1_3:34102784-34102803 None:intergenic 10.0%
!! ATTACTAAAATTAAAATTGA+AGG - chr1_3:34102785-34102804 None:intergenic 10.0%
!! TTTAAAAAAAAAAAATTTGG+GGG - chr1_3:34103674-34103693 None:intergenic 10.0%
!!! GATTAAATAACAAACATTTT+TGG + chr1_3:34103785-34103804 Msa0115270:intron 15.0%
!!! AATGTTATTACATCATATTT+TGG + chr1_3:34105278-34105297 Msa0115270:three_prime_UTR 15.0%
!!! ATATTTTTACTATTTTCTTC+CGG + chr1_3:34105319-34105338 Msa0115270:three_prime_UTR 15.0%
!!! TACATTTTTAGTTGCAAATA+AGG + chr1_3:34102861-34102880 Msa0115270:intron 20.0%
!!! TAAGGTACATAACTTTTTTT+AGG + chr1_3:34102879-34102898 Msa0115270:intron 20.0%
!!! AAGGTACATAACTTTTTTTA+GGG + chr1_3:34102880-34102899 Msa0115270:intron 20.0%
!!! ACTGTATTTTAGTGTATATT+TGG - chr1_3:34103056-34103075 None:intergenic 20.0%
!!! TACTAAATATTTGGAATCTT+TGG - chr1_3:34103093-34103112 None:intergenic 20.0%
!! ACAAAGAACTACTAAATATT+TGG - chr1_3:34103102-34103121 None:intergenic 20.0%
!! ATGAATAAATGGGAATTTAT+AGG - chr1_3:34103140-34103159 None:intergenic 20.0%
!! ACAGATATGAATGAATAAAT+GGG - chr1_3:34103150-34103169 None:intergenic 20.0%
!! AACAGATATGAATGAATAAA+TGG - chr1_3:34103151-34103170 None:intergenic 20.0%
!!! TTTTTGTTTTTGCATTTAAG+AGG + chr1_3:34103700-34103719 Msa0115270:intron 20.0%
!! ATTGAATAAACATACATTTG+TGG + chr1_3:34103736-34103755 Msa0115270:intron 20.0%
!!! TTTATAATTGGTTCCAAAAT+AGG + chr1_3:34104199-34104218 Msa0115270:CDS 20.0%
!! TAAGATCATACGAAAAATAT+AGG - chr1_3:34104568-34104587 None:intergenic 20.0%
!! TCTTGATATTATATGACAAA+TGG + chr1_3:34104691-34104710 Msa0115270:intron 20.0%
!! ACTAATTTGAAGATTTGATT+AGG + chr1_3:34104730-34104749 Msa0115270:intron 20.0%
!!! TGTGTTTAACATTTTAGTAA+AGG + chr1_3:34104865-34104884 Msa0115270:intron 20.0%
!!! ATGCTAGTAAAACATTTTTT+TGG - chr1_3:34104920-34104939 None:intergenic 20.0%
!! AAAATATCAGGAAAAGAATA+TGG - chr1_3:34105008-34105027 None:intergenic 20.0%
! TTAAAGGGAATTTATGATCA+GGG - chr1_3:34102656-34102675 None:intergenic 25.0%
! ATTAAAGGGAATTTATGATC+AGG - chr1_3:34102657-34102676 None:intergenic 25.0%
!!! TTTGGATTGCTTTTCAAAAT+TGG + chr1_3:34102694-34102713 Msa0115270:intron 25.0%
!!! TTGGATTGCTTTTCAAAATT+GGG + chr1_3:34102695-34102714 Msa0115270:intron 25.0%
! TGGTATCATAGTAAATTTAC+CGG + chr1_3:34102950-34102969 Msa0115270:intron 25.0%
! TTAGTGTATATTTGGTATCA+CGG - chr1_3:34103048-34103067 None:intergenic 25.0%
! GTGTAAAGTTAAATGTTAAG+TGG + chr1_3:34103207-34103226 Msa0115270:intron 25.0%
! ACAGAAAACAAAACCATTTA+GGG + chr1_3:34103231-34103250 Msa0115270:intron 25.0%
!!! ATTGTCATTTTCTACAAATC+AGG - chr1_3:34103369-34103388 None:intergenic 25.0%
!!! GGTTTGATTTTTCTATGTAA+GGG - chr1_3:34103426-34103445 None:intergenic 25.0%
!!! AGGTTTGATTTTTCTATGTA+AGG - chr1_3:34103427-34103446 None:intergenic 25.0%
! TTACATAGAAAAATCAAACC+TGG + chr1_3:34103426-34103445 Msa0115270:intron 25.0%
! TACAAGATAAAAAATCAACC+AGG - chr1_3:34103447-34103466 None:intergenic 25.0%
! TAAACTAAGTTAACATCTTG+TGG - chr1_3:34103569-34103588 None:intergenic 25.0%
! GTTAACTTAGTTTAAACTTG+AGG + chr1_3:34103575-34103594 Msa0115270:intron 25.0%
! TATTAATTACAGTGACAATG+TGG - chr1_3:34103638-34103657 None:intergenic 25.0%
!! AATTTGTATCTTTTGGCAAT+TGG + chr1_3:34103893-34103912 Msa0115270:intron 25.0%
!!! TGTTATTTTTTCCTTTCATC+AGG + chr1_3:34103973-34103992 Msa0115270:intron 25.0%
!!! GTTATTTTTTCCTTTCATCA+GGG + chr1_3:34103974-34103993 Msa0115270:intron 25.0%
!!! TTATTTTTTCCTTTCATCAG+GGG + chr1_3:34103975-34103994 Msa0115270:intron 25.0%
! AAACATTCGTTTCAGAAATT+TGG - chr1_3:34104182-34104201 None:intergenic 25.0%
! CTGAAACGAATGTTTATAAT+TGG + chr1_3:34104187-34104206 Msa0115270:CDS 25.0%
! TCGAAAAGAAAAATGCAAAA+TGG + chr1_3:34104231-34104250 Msa0115270:CDS 25.0%
! CGAAAAGAAAAATGCAAAAT+GGG + chr1_3:34104232-34104251 Msa0115270:CDS 25.0%
! GAAAAGAAAAATGCAAAATG+GGG + chr1_3:34104233-34104252 Msa0115270:CDS 25.0%
! AAAAGAAAAATGCAAAATGG+GGG + chr1_3:34104234-34104253 Msa0115270:CDS 25.0%
! TTTCAACTAGATTCTTTCTA+AGG - chr1_3:34104608-34104627 None:intergenic 25.0%
! GAAAGAATCTAGTTGAAATT+CGG + chr1_3:34104610-34104629 Msa0115270:intron 25.0%
!! ACAAATTTAGGGGTTTATTT+TGG + chr1_3:34104665-34104684 Msa0115270:intron 25.0%
! ATCTTCAAATTAGTATTCCA+AGG - chr1_3:34104724-34104743 None:intergenic 25.0%
!! TTCTTTTCCTGATATTTTTC+AGG + chr1_3:34105010-34105029 Msa0115270:intron 25.0%
!! TCTTTTCCTGATATTTTTCA+GGG + chr1_3:34105011-34105030 Msa0115270:intron 25.0%
! TTTCCAGTAACTATCTTAAA+AGG - chr1_3:34105236-34105255 None:intergenic 25.0%
AGAAACAACAAGTACAGAAT+GGG + chr1_3:34102461-34102480 Msa0115270:CDS 30.0%
TTGTTGTAGATGTGTATGTT+TGG + chr1_3:34102930-34102949 Msa0115270:intron 30.0%
CACAGAAAACAAAACCATTT+AGG + chr1_3:34103230-34103249 Msa0115270:intron 30.0%
AAAACAAAACCATTTAGGGA+AGG + chr1_3:34103235-34103254 Msa0115270:intron 30.0%
AAACAAAACCATTTAGGGAA+GGG + chr1_3:34103236-34103255 Msa0115270:intron 30.0%
TGATTATCACTAGAACATGA+TGG - chr1_3:34103321-34103340 None:intergenic 30.0%
AAAAAAAAATTTGGGGGACA+AGG - chr1_3:34103668-34103687 None:intergenic 30.0%
CATTTGTGGATAAACGATTA+TGG + chr1_3:34103750-34103769 Msa0115270:intron 30.0%
!!! ATTCCTGCCATTTTTTTTGT+GGG - chr1_3:34103876-34103895 None:intergenic 30.0%
!!! AATTCCTGCCATTTTTTTTG+TGG - chr1_3:34103877-34103896 None:intergenic 30.0%
TCCAAGCAAAGAAAAAATCA+AGG + chr1_3:34104128-34104147 Msa0115270:CDS 30.0%
!!! TCCTTGATTTTTTCTTTGCT+TGG - chr1_3:34104132-34104151 None:intergenic 30.0%
! ACCAAGAAGTGTACAAATTT+AGG + chr1_3:34104653-34104672 Msa0115270:intron 30.0%
! CCAAGAAGTGTACAAATTTA+GGG + chr1_3:34104654-34104673 Msa0115270:intron 30.0%
! CAAGAAGTGTACAAATTTAG+GGG + chr1_3:34104655-34104674 Msa0115270:intron 30.0%
!!! AATTTGGCAGGTTGATATTT+TGG + chr1_3:34105103-34105122 Msa0115270:exon 30.0%
AACATTTATATGCCAATCAC+TGG - chr1_3:34105264-34105283 None:intergenic 30.0%
!!! ATATTTTGGAGCTTGTTTCT+TGG + chr1_3:34105292-34105311 Msa0115270:three_prime_UTR 30.0%
! TCCTCAATATATTTTCTTGC+CGG - chr1_3:34105341-34105360 None:intergenic 30.0%
ACTGGAAGTAAAATATTCGT+GGG - chr1_3:34105372-34105391 None:intergenic 30.0%
AACTGGAAGTAAAATATTCG+TGG - chr1_3:34105373-34105392 None:intergenic 30.0%
! TATTTTACTTCCAGTTCAGA+AGG + chr1_3:34105377-34105396 Msa0115270:three_prime_UTR 30.0%
TTACATAATTCCTTCTGAAC+TGG - chr1_3:34105390-34105409 None:intergenic 30.0%
GTTGTCATCTTATAACCAAA+TGG + chr1_3:34105447-34105466 Msa0115270:three_prime_UTR 30.0%
TACATTTCGTCCGAATTATG+CGG - chr1_3:34102276-34102295 None:intergenic 35.0%
TGTGAGTAAGAGAGAGAAAA+TGG + chr1_3:34102420-34102439 Msa0115270:CDS 35.0%
AGAGAAAATGGTGAACATGA+TGG + chr1_3:34102432-34102451 Msa0115270:CDS 35.0%
! AAATGGTGAACATGATGGAA+TGG + chr1_3:34102437-34102456 Msa0115270:CDS 35.0%
CAGAAACAACAAGTACAGAA+TGG + chr1_3:34102460-34102479 Msa0115270:CDS 35.0%
ATGAACAATTGGAAACTCTG+AGG + chr1_3:34102518-34102537 Msa0115270:CDS 35.0%
ACAAAACCACCTTCATCTTT+GGG + chr1_3:34102744-34102763 Msa0115270:intron 35.0%
! TTTGAGTCATCGTGATTTTG+AGG - chr1_3:34103011-34103030 None:intergenic 35.0%
ATATCTGTTCTTGTGTCAGT+TGG + chr1_3:34103162-34103181 Msa0115270:intron 35.0%
! AAAGCATTCCCTATTACCTA+AGG + chr1_3:34103340-34103359 Msa0115270:intron 35.0%
AGCATAACCATAAGTACATG+AGG + chr1_3:34103492-34103511 Msa0115270:intron 35.0%
! ACTTGACAAGTTGAAAGCTT+TGG - chr1_3:34103530-34103549 None:intergenic 35.0%
TTTAAACTTGAGGTTCCTCA+AGG + chr1_3:34103585-34103604 Msa0115270:intron 35.0%
TTAAACTTGAGGTTCCTCAA+GGG + chr1_3:34103586-34103605 Msa0115270:intron 35.0%
!! TCAAGAGTACTTCTGATTCT+AGG - chr1_3:34103815-34103834 None:intergenic 35.0%
!!! TTCCTGCCATTTTTTTTGTG+GGG - chr1_3:34103875-34103894 None:intergenic 35.0%
! TGGCAGGAATTTGTATCTTT+TGG + chr1_3:34103886-34103905 Msa0115270:intron 35.0%
! AGCATTTCTTTAGAGAATGC+TGG - chr1_3:34103950-34103969 None:intergenic 35.0%
AACTAGTAACACTGAATCAG+AGG + chr1_3:34104257-34104276 Msa0115270:CDS 35.0%
!!! TGGTTTTGTCTTCTTATCCT+TGG - chr1_3:34104301-34104320 None:intergenic 35.0%
TGTTGAGAATGAAATTCCTC+TGG - chr1_3:34104321-34104340 None:intergenic 35.0%
!! GCAATTCAGAGCATTTTTCT+TGG - chr1_3:34104383-34104402 None:intergenic 35.0%
AACATATTCCGTGTTTCCAT+CGG + chr1_3:34104428-34104447 Msa0115270:CDS 35.0%
GGCAATGAAAAGACAAATGA+AGG - chr1_3:34104547-34104566 None:intergenic 35.0%
CCCTAAATTTGTACACTTCT+TGG - chr1_3:34104657-34104676 None:intergenic 35.0%
TGACAAATGGACATTAACCT+TGG + chr1_3:34104704-34104723 Msa0115270:intron 35.0%
GTCATTCCCTGAAAAATATC+AGG - chr1_3:34105020-34105039 None:intergenic 35.0%
TGACTATCTAGCTGGAAAAA+TGG + chr1_3:34105036-34105055 Msa0115270:CDS 35.0%
!! CTGGAAAAATGGAAGTATCT+GGG + chr1_3:34105047-34105066 Msa0115270:CDS 35.0%
CCAGTAACTATCTTAAAAGG+TGG - chr1_3:34105233-34105252 None:intergenic 35.0%
!!! CCACCTTTTAAGATAGTTAC+TGG + chr1_3:34105230-34105249 Msa0115270:three_prime_UTR 35.0%
CTGGAAATATTTCCAGTGAT+TGG + chr1_3:34105249-34105268 Msa0115270:three_prime_UTR 35.0%
TCCGGCAAGAAAATATATTG+AGG + chr1_3:34105337-34105356 Msa0115270:three_prime_UTR 35.0%
TGTCGAAGCGATGTATGTTA+AGG + chr1_3:34102486-34102505 Msa0115270:CDS 40.0%
GGTGATGACTGATGAACAAT+TGG + chr1_3:34102507-34102526 Msa0115270:CDS 40.0%
CTCAACAAGCTGTTCACAAA+TGG - chr1_3:34102566-34102585 None:intergenic 40.0%
CACAAAACCACCTTCATCTT+TGG + chr1_3:34102743-34102762 Msa0115270:intron 40.0%
AAGTCAAAGCCCAAAGATGA+AGG - chr1_3:34102756-34102775 None:intergenic 40.0%
!! ATCTTTGGGCTTTGACTTGT+TGG + chr1_3:34102758-34102777 Msa0115270:intron 40.0%
TAAATTTACCGGTATCACCG+TGG + chr1_3:34102961-34102980 Msa0115270:intron 40.0%
GCATCTCTACAAAATCACCA+CGG - chr1_3:34102981-34103000 None:intergenic 40.0%
TGGAATCTTTGGCGAAATGA+AGG - chr1_3:34103082-34103101 None:intergenic 40.0%
CCAATTTACCCTTCCCTAAA+TGG - chr1_3:34103247-34103266 None:intergenic 40.0%
CCATTTAGGGAAGGGTAAAT+TGG + chr1_3:34103244-34103263 Msa0115270:intron 40.0%
AAATTGGTACAAACACCAGC+AGG + chr1_3:34103260-34103279 Msa0115270:intron 40.0%
CACACATTCATTCCCTCTTT+AGG - chr1_3:34103293-34103312 None:intergenic 40.0%
CTAAAGAGGGAATGAATGTG+TGG + chr1_3:34103291-34103310 Msa0115270:intron 40.0%
TCAGGATGCCTTAGGTAATA+GGG - chr1_3:34103351-34103370 None:intergenic 40.0%
ATCAGGATGCCTTAGGTAAT+AGG - chr1_3:34103352-34103371 None:intergenic 40.0%
TCTACAAATCAGGATGCCTT+AGG - chr1_3:34103359-34103378 None:intergenic 40.0%
GCTAACACCTCATGTACTTA+TGG - chr1_3:34103502-34103521 None:intergenic 40.0%
TGACAATGTGGTCATTTCGA+GGG - chr1_3:34103626-34103645 None:intergenic 40.0%
TGGGGGGTAAGAGAAATATA+AGG - chr1_3:34103857-34103876 None:intergenic 40.0%
CTTACCCCCCACAAAAAAAA+TGG + chr1_3:34103866-34103885 Msa0115270:intron 40.0%
!!! TCCTGCCATTTTTTTTGTGG+GGG - chr1_3:34103874-34103893 None:intergenic 40.0%
! TTTTCCTTTCATCAGGGGTT+AGG + chr1_3:34103980-34103999 Msa0115270:intron 40.0%
ACAAAATCACATCCAGACAG+AGG + chr1_3:34104043-34104062 Msa0115270:CDS 40.0%
CGAATATACGCTCAAGAATC+TGG - chr1_3:34104092-34104111 None:intergenic 40.0%
TCTTGAGCGTATATTCGATC+AGG + chr1_3:34104095-34104114 Msa0115270:CDS 40.0%
CTTGAGCGTATATTCGATCA+GGG + chr1_3:34104096-34104115 Msa0115270:CDS 40.0%
CGTATATTCGATCAGGGAAA+TGG + chr1_3:34104102-34104121 Msa0115270:CDS 40.0%
TTTCAGAAATTTGGCCATGC+TGG - chr1_3:34104173-34104192 None:intergenic 40.0%
GGATAAGAAGACAAAACCAG+AGG + chr1_3:34104302-34104321 Msa0115270:CDS 40.0%
TCTCAACAAAATGCTGCTCT+AGG + chr1_3:34104333-34104352 Msa0115270:CDS 40.0%
CTCAACAAAATGCTGCTCTA+GGG + chr1_3:34104334-34104353 Msa0115270:CDS 40.0%
TCAACAAAATGCTGCTCTAG+GGG + chr1_3:34104335-34104354 Msa0115270:CDS 40.0%
!! CAGAGCATTTTTCTTGGTTC+TGG - chr1_3:34104377-34104396 None:intergenic 40.0%
AGATCCACCAGAAATTTGAG+TGG + chr1_3:34104462-34104481 Msa0115270:CDS 40.0%
AGACATGCCACTCAAATTTC+TGG - chr1_3:34104472-34104491 None:intergenic 40.0%
! CTCTCACCATTGTAGCTTTT+GGG + chr1_3:34104960-34104979 Msa0115270:intron 40.0%
!! GCTGGAAAAATGGAAGTATC+TGG + chr1_3:34105046-34105065 Msa0115270:CDS 40.0%
CAATATATACCAGCAAGCAG+AGG + chr1_3:34105075-34105094 Msa0115270:CDS 40.0%
ATAACTTTGAGTGTGTTGCC+TGG + chr1_3:34105157-34105176 Msa0115270:three_prime_UTR 40.0%
TAACTTTGAGTGTGTTGCCT+GGG + chr1_3:34105158-34105177 Msa0115270:three_prime_UTR 40.0%
TCTGCTCAACAAGATCTTGC+TGG + chr1_3:34102601-34102620 Msa0115270:CDS 45.0%
TCAAAGCCCAAAGATGAAGG+TGG - chr1_3:34102753-34102772 None:intergenic 45.0%
CAAAATCACCACGGTGATAC+CGG - chr1_3:34102972-34102991 None:intergenic 45.0%
!! GAGTCATCGTGATTTTGAGG+AGG - chr1_3:34103008-34103027 None:intergenic 45.0%
! TCTTTAGGAAGTAGTCCTGC+TGG - chr1_3:34103278-34103297 None:intergenic 45.0%
AGCAGGACTACTTCCTAAAG+AGG + chr1_3:34103277-34103296 Msa0115270:intron 45.0%
GCAGGACTACTTCCTAAAGA+GGG + chr1_3:34103278-34103297 Msa0115270:intron 45.0%
GACAATGTGGTCATTTCGAG+GGG - chr1_3:34103625-34103644 None:intergenic 45.0%
GTGACAATGTGGTCATTTCG+AGG - chr1_3:34103627-34103646 None:intergenic 45.0%
!!! CCTGCCATTTTTTTTGTGGG+GGG - chr1_3:34103873-34103892 None:intergenic 45.0%
AAATCACATCCAGACAGAGG+TGG + chr1_3:34104046-34104065 Msa0115270:CDS 45.0%
! TCAAGAATCTGGAGCTGAAC+CGG - chr1_3:34104081-34104100 None:intergenic 45.0%
! TCGATCTAGCACGCCTATTT+TGG - chr1_3:34104215-34104234 None:intergenic 45.0%
TGAATCAGAGGTAGAGACTG+AGG + chr1_3:34104269-34104288 Msa0115270:CDS 45.0%
! AGAGACTGAGGTTGATTCCA+AGG + chr1_3:34104281-34104300 Msa0115270:CDS 45.0%
TATTCCGTGTTTCCATCGGA+TGG + chr1_3:34104432-34104451 Msa0115270:CDS 45.0%
! CATGCCACTCAAATTTCTGG+TGG - chr1_3:34104469-34104488 None:intergenic 45.0%
CCAAAAGCTACAATGGTGAG+AGG - chr1_3:34104962-34104981 None:intergenic 45.0%
! CCTCTCACCATTGTAGCTTT+TGG + chr1_3:34104959-34104978 Msa0115270:intron 45.0%
TGTCAGCCCAAAAGCTACAA+TGG - chr1_3:34104969-34104988 None:intergenic 45.0%
TTTGGGCTGACAATCAAGAC+TGG + chr1_3:34104977-34104996 Msa0115270:intron 45.0%
TCAGGGAATGACTATCTAGC+TGG + chr1_3:34105028-34105047 Msa0115270:intron 45.0%
AATTGTAGTCCTCTGCTTGC+TGG - chr1_3:34105087-34105106 None:intergenic 45.0%
GCAAGCAGAGGACTACAATT+TGG + chr1_3:34105087-34105106 Msa0115270:CDS 45.0%
TTTCACACGAACATAAGCCC+AGG - chr1_3:34105178-34105197 None:intergenic 45.0%
!! CAAAATAATATAAAAATTAA+AGG - chr1_3:34102672-34102691 None:intergenic 5.0%
!!! TTTTAAAAAAAAAAAATTTG+GGG - chr1_3:34103675-34103694 None:intergenic 5.0%
!!! CTTTTTAAAAAAAAAAAATT+TGG - chr1_3:34103677-34103696 None:intergenic 5.0%
ACTTGAGGTTCCTCAAGGGA+CGG + chr1_3:34103590-34103609 Msa0115270:intron 50.0%
GATTTCAACTCCGTCCCTTG+AGG - chr1_3:34103603-34103622 None:intergenic 50.0%
CCCCCCACAAAAAAAATGGC+AGG + chr1_3:34103870-34103889 Msa0115270:intron 50.0%
CTTTCATCAGGGGTTAGGCT+GGG + chr1_3:34103985-34104004 Msa0115270:intron 50.0%
! TGCGACTCATTGATGACAGC+TGG + chr1_3:34104018-34104037 Msa0115270:CDS 50.0%
GATCTTATACCGCCATCCGA+TGG - chr1_3:34104447-34104466 None:intergenic 50.0%
GCAGAGGACTACAATTTGGC+AGG + chr1_3:34105091-34105110 Msa0115270:CDS 50.0%
!! GGCGGTGTCACCGCATAATT+CGG + chr1_3:34102263-34102282 Msa0115270:five_prime_UTR 55.0%
CCAGCCTAACCCCTGATGAA+AGG - chr1_3:34103987-34104006 None:intergenic 55.0%
CCTTTCATCAGGGGTTAGGC+TGG + chr1_3:34103984-34104003 Msa0115270:intron 55.0%
TGTAGGAGTCCACCTCTGTC+TGG - chr1_3:34104058-34104077 None:intergenic 55.0%
! ACAGAGGTGGACTCCTACAC+CGG + chr1_3:34104059-34104078 Msa0115270:CDS 55.0%
! ATCTGGAGCTGAACCGGTGT+AGG - chr1_3:34104075-34104094 None:intergenic 55.0%
GCTACTGAACTCAGCCAGCA+TGG + chr1_3:34104156-34104175 Msa0115270:CDS 55.0%
TCCGTGTTTCCATCGGATGG+CGG + chr1_3:34104435-34104454 Msa0115270:CDS 55.0%
ACCGCCATCCGATGGAAACA+CGG - chr1_3:34104439-34104458 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 34102247 34105480 34102247 ID=Msa0115270;Name=Msa0115270
chr1_3 mRNA 34102247 34105480 34102247 ID=Msa0115270-mRNA-1;Parent=Msa0115270;Name=Msa0115270-mRNA-1;_AED=0.03;_eAED=0.03;_QI=51|1|1|1|1|1|3|363|311
chr1_3 exon 34102247 34102622 34102247 ID=Msa0115270-mRNA-1:exon:10727;Parent=Msa0115270-mRNA-1
chr1_3 exon 34103995 34104519 34103995 ID=Msa0115270-mRNA-1:exon:10728;Parent=Msa0115270-mRNA-1
chr1_3 exon 34105032 34105480 34105032 ID=Msa0115270-mRNA-1:exon:10729;Parent=Msa0115270-mRNA-1
chr1_3 five_prime_UTR 34102247 34102297 34102247 ID=Msa0115270-mRNA-1:five_prime_utr;Parent=Msa0115270-mRNA-1
chr1_3 CDS 34102298 34102622 34102298 ID=Msa0115270-mRNA-1:cds;Parent=Msa0115270-mRNA-1
chr1_3 CDS 34103995 34104519 34103995 ID=Msa0115270-mRNA-1:cds;Parent=Msa0115270-mRNA-1
chr1_3 CDS 34105032 34105117 34105032 ID=Msa0115270-mRNA-1:cds;Parent=Msa0115270-mRNA-1
chr1_3 three_prime_UTR 34105118 34105480 34105118 ID=Msa0115270-mRNA-1:three_prime_utr;Parent=Msa0115270-mRNA-1
Gene Sequence

>Msa0115270

ATGTTTGTGTCTTTTGTCTCTTTCTTACTTTGTTTTTTTGCTGACTTTTGCGTTGCAGACACTCTCTTTCTCTTTCTCTTTCTCTTTCTCTCTCTCTCTGATAAAAATCATTTGTGTCTGTCTGTGAGTAAGAGAGAGAAAATGGTGAACATGATGGAATGGCAGAAACAACAAGTACAGAATGGGAATGTCGAAGCGATGTATGTTAAGGTGATGACTGATGAACAATTGGAAACTCTGAGGAAACAAATTGCTGTTTATGCTACCATTTGTGAACAGCTTGTTGAGATGCATAAAACTCTCTCTGCTCAACAAGATCTTGCTGGGGTTAGGCTGGGAAATTTATACTGCGACTCATTGATGACAGCTGGTCACAAAATCACATCCAGACAGAGGTGGACTCCTACACCGGTTCAGCTCCAGATTCTTGAGCGTATATTCGATCAGGGAAATGGAACTCCAAGCAAAGAAAAAATCAAGGAGATTGCTACTGAACTCAGCCAGCATGGCCAAATTTCTGAAACGAATGTTTATAATTGGTTCCAAAATAGGCGTGCTAGATCGAAAAGAAAAATGCAAAATGGGGGAACTAGTAACACTGAATCAGAGGTAGAGACTGAGGTTGATTCCAAGGATAAGAAGACAAAACCAGAGGAATTTCATTCTCAACAAAATGCTGCTCTAGGGGATGAAAATTTGTGCTACCAGAACCAAGAAAAATGCTCTGAATTGCAGTACTTGAATCATGATTCTAACAAAACATATTCCGTGTTTCCATCGGATGGCGGTATAAGATCCACCAGAAATTTGAGTGGCATGTCTCTTTATGATGAAGTGCTATCAAACTCAAGGAATGACTATCTAGCTGGAAAAATGGAAGTATCTGGGAGTTACAATATATACCAGCAAGCAGAGGACTACAATTTGGCAGGTTGA

Protein sequence

>Msa0115270

MFVSFVSFLLCFFADFCVADTLFLFLFLFLSLSDKNHLCLSVSKREKMVNMMEWQKQQVQNGNVEAMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLSAQQDLAGVRLGNLYCDSLMTAGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSKRKMQNGGTSNTESEVETEVDSKDKKTKPEEFHSQQNAALGDENLCYQNQEKCSELQYLNHDSNKTYSVFPSDGGIRSTRNLSGMSLYDEVLSNSRNDYLAGKMEVSGSYNIYQQAEDYNLAG*